:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-egsea'
.. highlight: bash

bioconductor-egsea
==================

.. conda:recipe:: bioconductor-egsea
   :replaces_section_title:
   :noindex:

   Ensemble of Gene Set Enrichment Analyses

   :homepage: https://bioconductor.org/packages/3.20/bioc/html/EGSEA.html
   :license: GPL-3
   :recipe: /`bioconductor-egsea <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-egsea>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-egsea/meta.yaml>`_
   :links: biotools: :biotools:`egsea`, usegalaxy-eu: :usegalaxy-eu:`egsea`

   This package implements the Ensemble of Gene Set Enrichment Analyses \(EGSEA\) method for gene set testing. EGSEA algorithm utilizes the analysis results of twelve prominent GSE algorithms in the literature to calculate collective significance scores for each gene set.


.. conda:package:: bioconductor-egsea

   |downloads_bioconductor-egsea| |docker_bioconductor-egsea|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.34.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.22.0-0</code>,  <code>1.20.0-0</code>,  <code>1.18.1-0</code>,  <code>1.18.0-0</code>,  <code>1.16.0-0</code>,  <code>1.14.0-1</code>,  </span></summary>
      

      ``1.34.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.1-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.12.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.68.0,<1.69.0``
   :depends bioconductor-biobase: ``>=2.66.0,<2.67.0``
   :depends bioconductor-edger: ``>=4.4.0,<4.5.0``
   :depends bioconductor-egseadata: ``>=1.34.0,<1.35.0``
   :depends bioconductor-gage: ``>=2.56.0,<2.57.0``
   :depends bioconductor-globaltest: ``>=5.60.0,<5.61.0``
   :depends bioconductor-gsva: ``>=2.0.0,<2.1.0``
   :depends bioconductor-limma: ``>=3.62.0,<3.63.0``
   :depends bioconductor-org.hs.eg.db: ``>=3.20.0,<3.21.0``
   :depends bioconductor-org.mm.eg.db: ``>=3.20.0,<3.21.0``
   :depends bioconductor-org.rn.eg.db: ``>=3.20.0,<3.21.0``
   :depends bioconductor-padog: ``>=1.48.0,<1.49.0``
   :depends bioconductor-pathview: ``>=1.46.0,<1.47.0``
   :depends bioconductor-safe: ``>=3.46.0,<3.47.0``
   :depends bioconductor-topgo: ``>=2.58.0,<2.59.0``
   :depends r-base: ``>=4.4,<4.5.0a0``
   :depends r-dt: 
   :depends r-ggplot2: ``>=1.0.0``
   :depends r-gplots: ``>=2.14.2``
   :depends r-htmlutils: ``>=0.1.5``
   :depends r-htmlwidgets: 
   :depends r-hwriter: ``>=1.2.2``
   :depends r-metap: 
   :depends r-plotly: 
   :depends r-rcolorbrewer: 
   :depends r-stringi: ``>=0.5.0``
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-egsea

   and update with::

      mamba update bioconductor-egsea

  To create a new environment, run::

      mamba create --name myenvname bioconductor-egsea

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-egsea:<tag>

   (see `bioconductor-egsea/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-egsea| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-egsea.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-egsea
   :alt:   (downloads)
.. |docker_bioconductor-egsea| image:: https://quay.io/repository/biocontainers/bioconductor-egsea/status
   :target: https://quay.io/repository/biocontainers/bioconductor-egsea
.. _`bioconductor-egsea/tags`: https://quay.io/repository/biocontainers/bioconductor-egsea?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-egsea";
        var versions = ["1.34.0","1.28.0","1.26.0","1.22.0","1.20.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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