:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-epitxdb'
.. highlight: bash

bioconductor-epitxdb
====================

.. conda:recipe:: bioconductor-epitxdb
   :replaces_section_title:
   :noindex:

   Storing and accessing epitranscriptomic information using the AnnotationDbi interface

   :homepage: https://bioconductor.org/packages/3.20/bioc/html/EpiTxDb.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-epitxdb <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-epitxdb>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-epitxdb/meta.yaml>`_

   EpiTxDb facilitates the storage of epitranscriptomic information. More specifically\, it can keep track of modification identity\, position\, the enzyme for introducing it on the RNA\, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.


.. conda:package:: bioconductor-epitxdb

   |downloads_bioconductor-epitxdb| |docker_bioconductor-epitxdb|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.22.0-0</code>,  <code>1.18.0-0</code>,  <code>1.14.0-0</code>,  <code>1.12.0-0</code>,  <code>1.10.0-0</code>,  <code>1.6.0-0</code>,  <code>1.4.0-0</code>,  <code>1.2.1-0</code>,  <code>1.2.0-0</code>,  </span></summary>
      

      ``1.22.0-0``,  ``1.18.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.1-0``,  ``1.2.0-0``,  ``1.0.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.72.0,<1.73.0``
   :depends bioconductor-biocfilecache: ``>=3.0.0,<3.1.0``
   :depends bioconductor-biocgenerics: ``>=0.56.0,<0.57.0``
   :depends bioconductor-biostrings: ``>=2.78.0,<2.79.0``
   :depends bioconductor-genomicfeatures: ``>=1.62.0,<1.63.0``
   :depends bioconductor-genomicranges: ``>=1.62.0,<1.63.0``
   :depends bioconductor-iranges: ``>=2.44.0,<2.45.0``
   :depends bioconductor-modstrings: ``>=1.26.0,<1.27.0``
   :depends bioconductor-s4vectors: ``>=0.48.0,<0.49.0``
   :depends bioconductor-seqinfo: ``>=1.0.0,<1.1.0``
   :depends bioconductor-trnadbimport: ``>=1.28.0,<1.29.0``
   :depends bioconductor-txdbmaker: ``>=1.6.0,<1.7.0``
   :depends r-base: ``>=4.5,<4.6.0a0``
   :depends r-curl: 
   :depends r-dbi: 
   :depends r-httr: 
   :depends r-rex: 
   :depends r-rsqlite: 
   :depends r-xml2: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-epitxdb

   and update with::

      mamba update bioconductor-epitxdb

  To create a new environment, run::

      mamba create --name myenvname bioconductor-epitxdb

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-epitxdb:<tag>

   (see `bioconductor-epitxdb/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-epitxdb| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-epitxdb.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-epitxdb
   :alt:   (downloads)
.. |docker_bioconductor-epitxdb| image:: https://quay.io/repository/biocontainers/bioconductor-epitxdb/status
   :target: https://quay.io/repository/biocontainers/bioconductor-epitxdb
.. _`bioconductor-epitxdb/tags`: https://quay.io/repository/biocontainers/bioconductor-epitxdb?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-epitxdb";
        var versions = ["1.22.0","1.18.0","1.14.0","1.12.0","1.10.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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