:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-raer'
.. highlight: bash

bioconductor-raer
=================

.. conda:recipe:: bioconductor-raer
   :replaces_section_title:
   :noindex:

   RNA editing tools in R

   :homepage: https://bioconductor.org/packages/3.20/bioc/html/raer.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-raer <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-raer>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-raer/meta.yaml>`_

   Toolkit for identification and statistical testing of RNA editing signals from within R. Provides support for identifying sites from bulk\-RNA and single cell RNA\-seq datasets\, and general methods for extraction of allelic read counts from alignment files. Facilitates annotation and exploratory analysis of editing signals using Bioconductor packages and resources.


.. conda:package:: bioconductor-raer

   |downloads_bioconductor-raer| |docker_bioconductor-raer|

   :versions:
      
      

      ``1.8.0-2``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.4.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocgenerics: ``>=0.56.0,<0.57.0``
   :depends bioconductor-biocgenerics: ``>=0.56.0,<0.57.0a0``
   :depends bioconductor-biocparallel: ``>=1.44.0,<1.45.0``
   :depends bioconductor-biocparallel: ``>=1.44.0,<1.45.0a0``
   :depends bioconductor-biostrings: ``>=2.78.0,<2.79.0``
   :depends bioconductor-biostrings: ``>=2.78.0,<2.79.0a0``
   :depends bioconductor-bsgenome: ``>=1.78.0,<1.79.0``
   :depends bioconductor-bsgenome: ``>=1.78.0,<1.79.0a0``
   :depends bioconductor-genomeinfodb: ``>=1.46.0,<1.47.0``
   :depends bioconductor-genomeinfodb: ``>=1.46.2,<1.47.0a0``
   :depends bioconductor-genomicalignments: ``>=1.46.0,<1.47.0``
   :depends bioconductor-genomicalignments: ``>=1.46.0,<1.47.0a0``
   :depends bioconductor-genomicfeatures: ``>=1.62.0,<1.63.0``
   :depends bioconductor-genomicfeatures: ``>=1.62.0,<1.63.0a0``
   :depends bioconductor-genomicranges: ``>=1.62.0,<1.63.0``
   :depends bioconductor-genomicranges: ``>=1.62.1,<1.63.0a0``
   :depends bioconductor-iranges: ``>=2.44.0,<2.45.0``
   :depends bioconductor-iranges: ``>=2.44.0,<2.45.0a0``
   :depends bioconductor-rhtslib: ``>=3.6.0,<3.7.0``
   :depends bioconductor-rhtslib: ``>=3.6.0,<3.7.0a0``
   :depends bioconductor-rsamtools: ``>=2.26.0,<2.27.0``
   :depends bioconductor-rsamtools: ``>=2.26.0,<2.27.0a0``
   :depends bioconductor-rtracklayer: ``>=1.70.0,<1.71.0``
   :depends bioconductor-rtracklayer: ``>=1.70.1,<1.71.0a0``
   :depends bioconductor-s4vectors: ``>=0.48.0,<0.49.0``
   :depends bioconductor-s4vectors: ``>=0.48.0,<0.49.0a0``
   :depends bioconductor-seqinfo: ``>=1.0.0,<1.1.0``
   :depends bioconductor-seqinfo: ``>=1.0.0,<1.1.0a0``
   :depends bioconductor-singlecellexperiment: ``>=1.32.0,<1.33.0``
   :depends bioconductor-singlecellexperiment: ``>=1.32.0,<1.33.0a0``
   :depends bioconductor-summarizedexperiment: ``>=1.40.0,<1.41.0``
   :depends bioconductor-summarizedexperiment: ``>=1.40.0,<1.41.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc: ``>=14``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends liblzma: ``>=5.8.2,<6.0a0``
   :depends libzlib: ``>=1.3.1,<2.0a0``
   :depends r-base: ``>=4.5,<4.6.0a0``
   :depends r-cli: 
   :depends r-matrix: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-raer

   and update with::

      mamba update bioconductor-raer

  To create a new environment, run::

      mamba create --name myenvname bioconductor-raer

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-raer:<tag>

   (see `bioconductor-raer/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-raer| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-raer.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-raer
   :alt:   (downloads)
.. |docker_bioconductor-raer| image:: https://quay.io/repository/biocontainers/bioconductor-raer/status
   :target: https://quay.io/repository/biocontainers/bioconductor-raer
.. _`bioconductor-raer/tags`: https://quay.io/repository/biocontainers/bioconductor-raer?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-raer";
        var versions = ["1.8.0","1.8.0","1.8.0","1.4.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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