:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-rrdp'
.. highlight: bash

bioconductor-rrdp
=================

.. conda:recipe:: bioconductor-rrdp
   :replaces_section_title:
   :noindex:

   Interface to the RDP Classifier

   :homepage: https://bioconductor.org/packages/3.20/bioc/html/rRDP.html
   :license: GPL-2 + file LICENSE
   :recipe: /`bioconductor-rrdp <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rrdp>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rrdp/meta.yaml>`_
   :links: biotools: :biotools:`rrdp`, doi: :doi:`10.1038/nmeth.3252`

   This package installs and interfaces the naive Bayesian classifier for 16S rRNA sequences developed by the Ribosomal Database Project \(RDP\). With this package the classifier trained with the standard training set can be used or a custom classifier can be trained.


.. conda:package:: bioconductor-rrdp

   |downloads_bioconductor-rrdp| |docker_bioconductor-rrdp|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.40.0-0</code>,  <code>1.36.0-0</code>,  <code>1.34.0-0</code>,  <code>1.32.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.24.0-1</code>,  <code>1.24.0-0</code>,  <code>1.22.0-0</code>,  </span></summary>
      

      ``1.40.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biostrings: ``>=2.74.0,<2.75.0``
   :depends r-base: ``>=4.4,<4.5.0a0``
   :depends r-rjava: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-rrdp

   and update with::

      mamba update bioconductor-rrdp

  To create a new environment, run::

      mamba create --name myenvname bioconductor-rrdp

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-rrdp:<tag>

   (see `bioconductor-rrdp/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-rrdp| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rrdp.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-rrdp
   :alt:   (downloads)
.. |docker_bioconductor-rrdp| image:: https://quay.io/repository/biocontainers/bioconductor-rrdp/status
   :target: https://quay.io/repository/biocontainers/bioconductor-rrdp
.. _`bioconductor-rrdp/tags`: https://quay.io/repository/biocontainers/bioconductor-rrdp?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-rrdp";
        var versions = ["1.40.0","1.36.0","1.34.0","1.32.0","1.28.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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