:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-rrdpdata'
.. highlight: bash

bioconductor-rrdpdata
=====================

.. conda:recipe:: bioconductor-rrdpdata
   :replaces_section_title:
   :noindex:

   Databases for the Default RDP Classifier

   :homepage: https://bioconductor.org/packages/3.20/data/experiment/html/rRDPData.html
   :license: GPL-2
   :recipe: /`bioconductor-rrdpdata <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rrdpdata>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rrdpdata/meta.yaml>`_

   The package provides the data for the RDP Classifier 2.14 released in August 2023. It contains the latest bacterial and archaeal taxonomy training set No. 19 as described in Wang Q\, Cole JR. 2024. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc 0\:e01063\-23. \<doi.org\/10.1128\/mra.01063\-23\>


.. conda:package:: bioconductor-rrdpdata

   |downloads_bioconductor-rrdpdata| |docker_bioconductor-rrdpdata|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.26.0-0</code>,  <code>1.22.0-0</code>,  <code>1.20.0-0</code>,  <code>1.18.0-0</code>,  <code>1.14.0-1</code>,  <code>1.14.0-0</code>,  <code>1.12.0-0</code>,  <code>1.10.0-1</code>,  <code>1.10.0-0</code>,  </span></summary>
      

      ``1.26.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.2.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-data-packages: ``>=20241103``
   :depends bioconductor-rrdp: ``>=1.40.0,<1.41.0``
   :depends curl: 
   :depends r-base: ``>=4.4,<4.5.0a0``
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-rrdpdata

   and update with::

      mamba update bioconductor-rrdpdata

  To create a new environment, run::

      mamba create --name myenvname bioconductor-rrdpdata

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-rrdpdata:<tag>

   (see `bioconductor-rrdpdata/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-rrdpdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rrdpdata.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-rrdpdata
   :alt:   (downloads)
.. |docker_bioconductor-rrdpdata| image:: https://quay.io/repository/biocontainers/bioconductor-rrdpdata/status
   :target: https://quay.io/repository/biocontainers/bioconductor-rrdpdata
.. _`bioconductor-rrdpdata/tags`: https://quay.io/repository/biocontainers/bioconductor-rrdpdata?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-rrdpdata";
        var versions = ["1.26.0","1.22.0","1.20.0","1.18.0","1.14.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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