:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-scarray'
.. highlight: bash

bioconductor-scarray
====================

.. conda:recipe:: bioconductor-scarray
   :replaces_section_title:
   :noindex:

   Large\-scale single\-cell omics data manipulation with GDS files

   :homepage: https://bioconductor.org/packages/3.20/bioc/html/SCArray.html
   :license: GPL-3
   :recipe: /`bioconductor-scarray <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-scarray>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-scarray/meta.yaml>`_

   Provides large\-scale single\-cell omics data manipulation using Genomic Data Structure \(GDS\) files. It combines dense and sparse matrices stored in GDS files and the Bioconductor infrastructure framework \(SingleCellExperiment and DelayedArray\) to provide out\-of\-memory data storage and large\-scale manipulation using the R programming language.


.. conda:package:: bioconductor-scarray

   |downloads_bioconductor-scarray| |docker_bioconductor-scarray|

   :versions:
      
      

      ``1.14.0-0``,  ``1.10.0-0``,  ``1.8.2-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.2.1-1``,  ``1.2.1-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.40.0,<1.41.0``
   :depends bioconductor-biocparallel: ``>=1.40.0,<1.41.0a0``
   :depends bioconductor-biocsingular: ``>=1.22.0,<1.23.0``
   :depends bioconductor-biocsingular: ``>=1.22.0,<1.23.0a0``
   :depends bioconductor-delayedarray: ``>=0.32.0,<0.33.0``
   :depends bioconductor-delayedarray: ``>=0.32.0,<0.33.0a0``
   :depends bioconductor-delayedmatrixstats: ``>=1.28.0,<1.29.0``
   :depends bioconductor-delayedmatrixstats: ``>=1.28.0,<1.29.0a0``
   :depends bioconductor-gdsfmt: ``>=1.42.0,<1.43.0``
   :depends bioconductor-gdsfmt: ``>=1.42.0,<1.43.0a0``
   :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0``
   :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0a0``
   :depends bioconductor-singlecellexperiment: ``>=1.28.0,<1.29.0``
   :depends bioconductor-singlecellexperiment: ``>=1.28.0,<1.29.0a0``
   :depends bioconductor-sparsearray: ``>=1.6.0,<1.7.0``
   :depends bioconductor-sparsearray: ``>=1.6.0,<1.7.0a0``
   :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0``
   :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc: ``>=13``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends libstdcxx: ``>=13``
   :depends r-base: ``>=4.4,<4.5.0a0``
   :depends r-matrix: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-scarray

   and update with::

      mamba update bioconductor-scarray

  To create a new environment, run::

      mamba create --name myenvname bioconductor-scarray

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-scarray:<tag>

   (see `bioconductor-scarray/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-scarray| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-scarray.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-scarray
   :alt:   (downloads)
.. |docker_bioconductor-scarray| image:: https://quay.io/repository/biocontainers/bioconductor-scarray/status
   :target: https://quay.io/repository/biocontainers/bioconductor-scarray
.. _`bioconductor-scarray/tags`: https://quay.io/repository/biocontainers/bioconductor-scarray?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-scarray";
        var versions = ["1.14.0","1.10.0","1.8.2","1.6.0","1.6.0"];
    </script>






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.. raw:: html
    :file: ../../templates/package_dashboard.html

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