:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'mimick'
.. highlight: bash

mimick
======

.. conda:recipe:: mimick
   :replaces_section_title:
   :noindex:

   Simulate linked\-read data

   :homepage: https://github.com/pdimens/mimick
   :documentation: https://pdimens.github.io/mimick
   
   :license: GPL3 / GPL-3.0-or-later
   :recipe: /`mimick <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/mimick>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/mimick/meta.yaml>`_

   Mimick\, formerly known as XENIA from the VISOR project\, can simulate all manner of available
   linked\-read chemistries \(10x\, haplotagging\, stlfr\, tellseq\). It allows you to simulate an
   arbitrary number of haplotypes\, set overall coverage\, molecule coverage\, molecules per barcode\,
   whether DNA is circular\, etc.



.. conda:package:: mimick

   |downloads_mimick| |docker_mimick|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>3.0.1-0</code>,  <code>3.0-1</code>,  <code>3.0-0</code>,  <code>2.3-0</code>,  <code>2.2.2-0</code>,  <code>2.2.1-0</code>,  <code>2.2-0</code>,  <code>2.1-0</code>,  <code>2.0.1-0</code>,  </span></summary>
      

      ``3.0.1-0``,  ``3.0-1``,  ``3.0-0``,  ``2.3-0``,  ``2.2.2-0``,  ``2.2.1-0``,  ``2.2-0``,  ``2.1-0``,  ``2.0.1-0``,  ``2.0-0``,  ``1.3-0``,  ``1.2.1-0``,  ``1.2-0``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.2-0``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends click: ``>=8.2``
   :depends julia: ``>=1.10``
   :depends pyjuliacall: ``>=0.9.26``
   :depends python: ``>=3.10``
   :depends rich-click: ``>=1.9.3``
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install mimick

   and update with::

      mamba update mimick

  To create a new environment, run::

      mamba create --name myenvname mimick

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/mimick:<tag>

   (see `mimick/tags`_ for valid values for ``<tag>``)


.. |downloads_mimick| image:: https://img.shields.io/conda/dn/bioconda/mimick.svg?style=flat
   :target: https://anaconda.org/bioconda/mimick
   :alt:   (downloads)
.. |docker_mimick| image:: https://quay.io/repository/biocontainers/mimick/status
   :target: https://quay.io/repository/biocontainers/mimick
.. _`mimick/tags`: https://quay.io/repository/biocontainers/mimick?tab=tags


.. raw:: html

    <script>
        var package = "mimick";
        var versions = ["3.0.1","3.0","3.0","2.3","2.2.2"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mimick/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/mimick/README.html