:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'nanomotif'
.. highlight: bash

nanomotif
=========

.. conda:recipe:: nanomotif
   :replaces_section_title:
   :noindex:

   Identifying methlyation motifs in nanopore data.

   :homepage: https://github.com/MicrobialDarkMatter/nanomotif
   :documentation: https://nanomotif.readthedocs.io/en/latest
   
   :license: MIT / MIT
   :recipe: /`nanomotif <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/nanomotif>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/nanomotif/meta.yaml>`_

   


.. conda:package:: nanomotif

   |downloads_nanomotif| |docker_nanomotif|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.0.2-0</code>,  <code>1.0.0-0</code>,  <code>0.8.0-0</code>,  <code>0.7.1-0</code>,  <code>0.7.0-0</code>,  <code>0.6.2-0</code>,  <code>0.6.1-0</code>,  <code>0.6.0-0</code>,  <code>0.5.8-0</code>,  </span></summary>
      

      ``1.0.2-0``,  ``1.0.0-0``,  ``0.8.0-0``,  ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.8-0``,  ``0.5.6-0``,  ``0.5.5-0``,  ``0.5.4-0``,  ``0.5.3-0``,  ``0.5.2-1``,  ``0.5.2-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.17-0``,  ``0.4.16-0``,  ``0.4.15-0``,  ``0.4.14-0``,  ``0.4.13-0``,  ``0.4.12-0``,  ``0.4.11-0``,  ``0.4.10-0``,  ``0.4.9-0``,  ``0.4.8-0``,  ``0.4.7-0``,  ``0.4.6-0``,  ``0.4.5-0``,  ``0.4.4-0``,  ``0.4.3-0``,  ``0.1.20-0``,  ``0.1.19-0``,  ``0.1.18-0``,  ``0.1.17-0``,  ``0.1.15-0``,  ``0.1.14-0``,  ``0.1.13-0``,  ``0.1.7-0``

      
      .. raw:: html

         </details>
      

   
   :depends bio: ``>=1.6.2``
   :depends epimetheus-py: ``0.7.4``
   :depends hdbscan: 
   :depends networkx: ``>=3.1``
   :depends numpy: ``>=1.24.4,<=2.0.0``
   :depends pandas: ``>=2.0.2``
   :depends polars: ``>=1.31``
   :depends progressbar2: ``>=3.53.1``
   :depends pyarrow: ``>=15.0.2``
   :depends pyfastx: ``>=0.2.10``
   :depends pysam: ``>=0.22.0``
   :depends python: ``>=3``
   :depends requests: 
   :depends scikit-learn: ``>=1.5.2``
   :depends scipy: ``>=1.10.1``
   :depends snakemake-minimal: ``>=7.32.4``
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install nanomotif

   and update with::

      mamba update nanomotif

  To create a new environment, run::

      mamba create --name myenvname nanomotif

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/nanomotif:<tag>

   (see `nanomotif/tags`_ for valid values for ``<tag>``)


.. |downloads_nanomotif| image:: https://img.shields.io/conda/dn/bioconda/nanomotif.svg?style=flat
   :target: https://anaconda.org/bioconda/nanomotif
   :alt:   (downloads)
.. |docker_nanomotif| image:: https://quay.io/repository/biocontainers/nanomotif/status
   :target: https://quay.io/repository/biocontainers/nanomotif
.. _`nanomotif/tags`: https://quay.io/repository/biocontainers/nanomotif?tab=tags


.. raw:: html

    <script>
        var package = "nanomotif";
        var versions = ["1.0.2","1.0.0","0.8.0","0.7.1","0.7.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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