:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'openms-meta'
.. highlight: bash

openms-meta
===========

.. conda:recipe:: openms-meta
   :replaces_section_title:
   :noindex:

   OpenMS is an open\-source software C\+\+ library for LC\-MS data management and analyses. The openms\-meta package should not be installed. Please use one of its outputs libopenms\, openms \(\=tools\) or openms\-thirdparty.

   :homepage: https://github.com/OpenMS/OpenMS
   :documentation: https://openms.readthedocs.io/en/latest/index.html
   
   :license: BSD / BSD-3-Clause
   :recipe: /`openms-meta <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/openms-meta>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/openms-meta/meta.yaml>`_
   :links: biotools: :biotools:`openms`, usegalaxy-eu: :usegalaxy-eu:`openms_fileconverter`, doi: :doi:`10.1038/s41592-024-02197-7`

   


.. conda:package:: libopenms

   |downloads_libopenms| |docker_libopenms|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>3.5.0-0</code>,  <code>3.4.1-1</code>,  <code>3.4.1-0</code>,  <code>3.4.0-1</code>,  <code>3.4.0-0</code>,  <code>3.3.0-8</code>,  <code>3.3.0-6</code>,  <code>3.3.0-5</code>,  <code>3.2.0-5</code>,  </span></summary>
      

      ``3.5.0-0``,  ``3.4.1-1``,  ``3.4.1-0``,  ``3.4.0-1``,  ``3.4.0-0``,  ``3.3.0-8``,  ``3.3.0-6``,  ``3.3.0-5``,  ``3.2.0-5``,  ``3.2.0-4``,  ``3.1.0-4``,  ``3.1.0-3``,  ``3.1.0-2``,  ``3.1.0-1``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.9.1-4``,  ``2.9.1-1``,  ``2.9.1-0``,  ``2.9.0-0``,  ``2.8.0-4``,  ``2.8.0-3``,  ``2.8.0-2``,  ``2.8.0-1``,  ``2.8.0-0``,  ``2.7.0-1``,  ``2.6.0-0``,  ``2.5.0-6``,  ``2.5.0-5``,  ``2.5.0-4``,  ``2.5.0-3``,  ``2.5.0-2``,  ``2.5.0-1``,  ``2.5.0-0``,  ``2.4.0-3``

      
      .. raw:: html

         </details>
      

   
   :depends __glibc: ``>=2.17,<3.0.a0``
   :depends _openmp_mutex: ``>=4.5``
   :depends bzip2: ``>=1.0.8,<2.0a0``
   :depends coin-or-cbc: ``>=2.10.12,<2.11.0a0``
   :depends coin-or-cgl: ``>=0.60,<0.61.0a0``
   :depends coin-or-clp: ``>=1.17,<1.18.0a0``
   :depends coin-or-utils: ``>=2.11,<2.12.0a0``
   :depends libgcc: ``>=13``
   :depends libstdcxx: ``>=13``
   :depends libsvm: ``>=335,<400``
   :depends libzlib: ``>=1.3.1,<2.0a0``
   :depends qt6-main: ``>=6.7.3,<6.8.0a0``
   :depends xerces-c: ``>=3.2.5,<3.3.0a0``
   :depends yaml-cpp: ``>=0.8.0,<0.9.0a0``
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>linux-aarch64</code>,  <code>osx-arm64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install libopenms

   and update with::

      mamba update libopenms

  To create a new environment, run::

      mamba create --name myenvname libopenms

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/libopenms:<tag>

   (see `libopenms/tags`_ for valid values for ``<tag>``)


.. |downloads_libopenms| image:: https://img.shields.io/conda/dn/bioconda/libopenms.svg?style=flat
   :target: https://anaconda.org/bioconda/libopenms
   :alt:   (downloads)
.. |docker_libopenms| image:: https://quay.io/repository/biocontainers/openms-meta/status
   :target: https://quay.io/repository/biocontainers/openms-meta
.. _`libopenms/tags`: https://quay.io/repository/biocontainers/libopenms?tab=tags


.. raw:: html

    <script>
        var package = "openms-meta";
        var versions = ["3.5.0","3.4.1","3.4.1","3.4.0","3.4.0"];
    </script>


.. conda:package:: openms

   |downloads_openms| |docker_openms|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>3.5.0-0</code>,  <code>3.4.1-1</code>,  <code>3.4.1-0</code>,  <code>3.4.0-1</code>,  <code>3.4.0-0</code>,  <code>3.3.0-8</code>,  <code>3.3.0-6</code>,  <code>3.3.0-5</code>,  <code>3.2.0-5</code>,  </span></summary>
      

      ``3.5.0-0``,  ``3.4.1-1``,  ``3.4.1-0``,  ``3.4.0-1``,  ``3.4.0-0``,  ``3.3.0-8``,  ``3.3.0-6``,  ``3.3.0-5``,  ``3.2.0-5``,  ``3.2.0-4``,  ``3.1.0-4``,  ``3.1.0-3``,  ``3.1.0-2``,  ``3.1.0-1``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.9.1-4``,  ``2.9.1-1``,  ``2.9.1-0``,  ``2.9.0-0``,  ``2.8.0-4``,  ``2.8.0-3``,  ``2.8.0-2``,  ``2.8.0-1``,  ``2.8.0-0``,  ``2.7.0-1``,  ``2.6.0-0``,  ``2.5.0-6``,  ``2.5.0-5``,  ``2.5.0-4``,  ``2.5.0-3``,  ``2.5.0-2``,  ``2.5.0-1``,  ``2.5.0-0``,  ``2.4.0-1``,  ``2.4.0-0``,  ``2.3.0-3``,  ``2.3.0-2``,  ``2.3.0-1``,  ``2.3.0-0``,  ``2.2.0-2``,  ``2.2.0-1``,  ``2.2.0-0``,  ``2.1.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends eigen: ``>=3.4.0,<3.5.0a0``
   :depends libarrow: ``>=21.0.0,<21.1.0a0``
   :depends libgcc: ``>=13``
   :depends libopenms: ``3.5.0 hdd6e20e_0``
   :depends libparquet: ``>=21.0.0,<21.1.0a0``
   :depends libstdcxx: ``>=13``
   :depends libsvm: ``>=335,<400``
   :depends qt6-main: ``>=6.7.3,<6.8.0a0``
   :depends xerces-c: ``>=3.2.5,<3.3.0a0``
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>linux-aarch64</code>,  <code>osx-arm64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install openms

   and update with::

      mamba update openms

  To create a new environment, run::

      mamba create --name myenvname openms

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/openms:<tag>

   (see `openms/tags`_ for valid values for ``<tag>``)


.. |downloads_openms| image:: https://img.shields.io/conda/dn/bioconda/openms.svg?style=flat
   :target: https://anaconda.org/bioconda/openms
   :alt:   (downloads)
.. |docker_openms| image:: https://quay.io/repository/biocontainers/openms-meta/status
   :target: https://quay.io/repository/biocontainers/openms-meta
.. _`openms/tags`: https://quay.io/repository/biocontainers/openms?tab=tags


.. raw:: html

    <script>
        var package = "openms-meta";
        var versions = ["3.5.0","3.4.1","3.4.1","3.4.0","3.4.0"];
    </script>


.. conda:package:: openms-meta

   |downloads_openms-meta| |docker_openms-meta|

   :versions:
      
      

      

      

   
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>linux-aarch64</code>,  <code>osx-arm64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install openms-meta

   and update with::

      mamba update openms-meta

  To create a new environment, run::

      mamba create --name myenvname openms-meta

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/openms-meta:<tag>

   (see `openms-meta/tags`_ for valid values for ``<tag>``)


.. |downloads_openms-meta| image:: https://img.shields.io/conda/dn/bioconda/openms-meta.svg?style=flat
   :target: https://anaconda.org/bioconda/openms-meta
   :alt:   (downloads)
.. |docker_openms-meta| image:: https://quay.io/repository/biocontainers/openms-meta/status
   :target: https://quay.io/repository/biocontainers/openms-meta
.. _`openms-meta/tags`: https://quay.io/repository/biocontainers/openms-meta?tab=tags


.. raw:: html

    <script>
        var package = "openms-meta";
        var versions = [];
    </script>


.. conda:package:: openms-thirdparty

   |downloads_openms-thirdparty| |docker_openms-thirdparty|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>3.5.0-0</code>,  <code>3.4.1-1</code>,  <code>3.4.1-0</code>,  <code>3.4.0-1</code>,  <code>3.4.0-0</code>,  <code>3.3.0-8</code>,  <code>3.3.0-6</code>,  <code>3.3.0-5</code>,  <code>3.2.0-5</code>,  </span></summary>
      

      ``3.5.0-0``,  ``3.4.1-1``,  ``3.4.1-0``,  ``3.4.0-1``,  ``3.4.0-0``,  ``3.3.0-8``,  ``3.3.0-6``,  ``3.3.0-5``,  ``3.2.0-5``,  ``3.2.0-4``,  ``3.1.0-4``,  ``3.1.0-3``,  ``3.1.0-2``,  ``3.1.0-1``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.9.1-4``,  ``2.9.1-1``,  ``2.9.1-0``,  ``2.9.0-0``,  ``2.8.0-4``,  ``2.8.0-3``,  ``2.8.0-2``,  ``2.8.0-1``,  ``2.8.0-0``,  ``2.7.0-1``,  ``2.6.0-0``,  ``2.5.0-6``,  ``2.5.0-5``,  ``2.5.0-4``,  ``2.5.0-3``,  ``2.5.0-2``,  ``2.5.0-1``,  ``2.5.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends comet-ms: ``2024011``
   :depends gnuplot: 
   :depends luciphor2: ``2020_04_03``
   :depends msgf_plus: ``2024.03.26``
   :depends openms: ``3.5.0 h78fb946_0``
   :depends percolator: ``3.7.1``
   :depends r-gplots: 
   :depends sage-proteomics: ``0.14.7``
   :depends sirius-ms: ``>=6.1.0``
   :depends thermorawfileparser: ``1.4.3``
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>linux-aarch64</code>,  <code>osx-arm64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install openms-thirdparty

   and update with::

      mamba update openms-thirdparty

  To create a new environment, run::

      mamba create --name myenvname openms-thirdparty

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/openms-thirdparty:<tag>

   (see `openms-thirdparty/tags`_ for valid values for ``<tag>``)


.. |downloads_openms-thirdparty| image:: https://img.shields.io/conda/dn/bioconda/openms-thirdparty.svg?style=flat
   :target: https://anaconda.org/bioconda/openms-thirdparty
   :alt:   (downloads)
.. |docker_openms-thirdparty| image:: https://quay.io/repository/biocontainers/openms-meta/status
   :target: https://quay.io/repository/biocontainers/openms-meta
.. _`openms-thirdparty/tags`: https://quay.io/repository/biocontainers/openms-thirdparty?tab=tags


.. raw:: html

    <script>
        var package = "openms-meta";
        var versions = ["3.5.0","3.4.1","3.4.1","3.4.0","3.4.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/openms-meta/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/openms-meta/README.html