:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'proteinortho'
.. highlight: bash

proteinortho
============

.. conda:recipe:: proteinortho
   :replaces_section_title:
   :noindex:

   Proteinortho is a tool to detect orthologous genes within different species.

   :homepage: https://gitlab.com/paulklemm_PHD/proteinortho
   :documentation: https://gitlab.com/paulklemm_PHD/proteinortho/-/blob/master/README.md
   
   :license: GPL / GPL-3.0-only
   :recipe: /`proteinortho <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/proteinortho>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/proteinortho/meta.yaml>`_
   :links: biotools: :biotools:`proteinortho`, doi: :doi:`10.3389/fbinf.2023.1322477`, usegalaxy-eu: :usegalaxy-eu:`proteinortho`, usegalaxy-eu: :usegalaxy-eu:`proteinortho_summary`, usegalaxy-eu: :usegalaxy-eu:`proteinortho_grab_proteins`

   


.. conda:package:: proteinortho

   |downloads_proteinortho| |docker_proteinortho|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>6.3.6-0</code>,  <code>6.3.5-1</code>,  <code>6.3.5-0</code>,  <code>6.3.4-1</code>,  <code>6.3.4-0</code>,  <code>6.3.3-1</code>,  <code>6.3.3-0</code>,  <code>6.3.2-0</code>,  <code>6.3.1-0</code>,  </span></summary>
      

      ``6.3.6-0``,  ``6.3.5-1``,  ``6.3.5-0``,  ``6.3.4-1``,  ``6.3.4-0``,  ``6.3.3-1``,  ``6.3.3-0``,  ``6.3.2-0``,  ``6.3.1-0``,  ``6.3.0-0``,  ``6.2.3-1``,  ``6.2.3-0``,  ``6.2.2-0``,  ``6.2.1-0``,  ``6.2.0-0``,  ``6.1.7-0``,  ``6.1.6-0``,  ``6.1.5-0``,  ``6.1.4-0``,  ``6.1.3-0``,  ``6.1.2-0``,  ``6.1.1-1``,  ``6.1.1-0``,  ``6.1.0-2``,  ``6.1.0-1``,  ``6.1.0-0``,  ``6.0.35-0``,  ``6.0.34-0``,  ``6.0.33-1``,  ``6.0.33-0``,  ``6.0.32-0``,  ``6.0.31-0``,  ``6.0.30-0``,  ``6.0.29-1``,  ``6.0.29-0``,  ``6.0.28-1``,  ``6.0.28-0``,  ``6.0.27-0``,  ``6.0.26-0``,  ``6.0.25-0``,  ``6.0.24-0``,  ``6.0.23-0``,  ``6.0.22-0``,  ``6.0.21-0``,  ``6.0.20-0``,  ``6.0.19-0``,  ``6.0.18-1``,  ``6.0.18-0``,  ``6.0.17-0``,  ``6.0.16-1``,  ``6.0.16-0``,  ``6.0.15-0``,  ``6.0.14-0``,  ``6.0.13-0``,  ``6.0.12-0``,  ``6.0.11-0``,  ``6.0.10-0``,  ``6.0.9-0``,  ``6.0.8-0``,  ``6.0.7-0``,  ``6.0.6-0``,  ``6.0.5-0``,  ``6.0.4-0``,  ``6.0.3-0``,  ``6.0.2c-0``,  ``6.0.1-0``,  ``6.0-0``,  ``6.0b-0``

      
      .. raw:: html

         </details>
      

   
   :depends _openmp_mutex: ``>=4.5``
   :depends diamond: ``>=0.9.29``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc: ``>=13``
   :depends libgfortran: 
   :depends libgfortran5: ``>=13.3.0``
   :depends libgomp: 
   :depends liblapacke: ``>=3.9.0,<4.0a0``
   :depends libstdcxx: ``>=13``
   :depends perl: 
   :depends python: 
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>osx-arm64</code>,  <code>linux-aarch64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install proteinortho

   and update with::

      mamba update proteinortho

  To create a new environment, run::

      mamba create --name myenvname proteinortho

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/proteinortho:<tag>

   (see `proteinortho/tags`_ for valid values for ``<tag>``)


.. |downloads_proteinortho| image:: https://img.shields.io/conda/dn/bioconda/proteinortho.svg?style=flat
   :target: https://anaconda.org/bioconda/proteinortho
   :alt:   (downloads)
.. |docker_proteinortho| image:: https://quay.io/repository/biocontainers/proteinortho/status
   :target: https://quay.io/repository/biocontainers/proteinortho
.. _`proteinortho/tags`: https://quay.io/repository/biocontainers/proteinortho?tab=tags


.. raw:: html

    <script>
        var package = "proteinortho";
        var versions = ["6.3.6","6.3.5","6.3.5","6.3.4","6.3.4"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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