:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'scatac-fragment-tools'
.. highlight: bash

scatac-fragment-tools
=====================

.. conda:recipe:: scatac-fragment-tools
   :replaces_section_title:
   :noindex:

   Tools for working with scATAC\-seq fragment files.

   :homepage: https://github.com/aertslab/scatac_fragment_tools/
   :documentation: https://aertslab.github.io/scatac_fragment_tools/
   
   :license: MIT
   :recipe: /`scatac-fragment-tools <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/scatac-fragment-tools>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/scatac-fragment-tools/meta.yaml>`_

   


.. conda:package:: scatac-fragment-tools

   |downloads_scatac-fragment-tools| |docker_scatac-fragment-tools|

   :versions:
      
      

      ``0.1.4-0``

      

   
   :depends joblib: 
   :depends libgcc: ``>=13``
   :depends numba: 
   :depends numpy: ``<2``
   :depends polars: ``>=1.0.0``
   :depends pyarrow: 
   :depends pybigtools: ``>=0.2.0``
   :depends pybigwig: 
   :depends python: ``>=3.10,<3.11.0a0``
   :depends python_abi: ``3.10.* *_cp310``
   :depends rich-argparse: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install scatac-fragment-tools

   and update with::

      mamba update scatac-fragment-tools

  To create a new environment, run::

      mamba create --name myenvname scatac-fragment-tools

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/scatac-fragment-tools:<tag>

   (see `scatac-fragment-tools/tags`_ for valid values for ``<tag>``)


.. |downloads_scatac-fragment-tools| image:: https://img.shields.io/conda/dn/bioconda/scatac-fragment-tools.svg?style=flat
   :target: https://anaconda.org/bioconda/scatac-fragment-tools
   :alt:   (downloads)
.. |docker_scatac-fragment-tools| image:: https://quay.io/repository/biocontainers/scatac-fragment-tools/status
   :target: https://quay.io/repository/biocontainers/scatac-fragment-tools
.. _`scatac-fragment-tools/tags`: https://quay.io/repository/biocontainers/scatac-fragment-tools?tab=tags


.. raw:: html

    <script>
        var package = "scatac-fragment-tools";
        var versions = ["0.1.4"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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