:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'trf'
.. highlight: bash

trf
===

.. conda:recipe:: trf
   :replaces_section_title:
   :noindex:

   Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences.

   :homepage: https://tandem.bu.edu/trf/trf.html
   :developer docs: https://github.com/Benson-Genomics-Lab/TRF
   :license: AGPL / AGPL-3.0-or-later
   :recipe: /`trf <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/trf>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/trf/meta.yaml>`_
   :links: biotools: :biotools:`trf`

   Tandem Repeats Finder \(TRF\) is a bioinformatics tool used to identify and locate tandem repeats in DNA sequences. 
   These repeats are consecutive copies of short sequence patterns found in many genomes and are of interest in genetic studies. 



.. conda:package:: trf

   |downloads_trf| |docker_trf|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>4.10.0rc2-0</code>,  <code>4.09.1-7</code>,  <code>4.09.1-6</code>,  <code>4.09.1-5</code>,  <code>4.09.1-4</code>,  <code>4.09.1-3</code>,  <code>4.09.1-2</code>,  <code>4.09.1-1</code>,  <code>4.09.1-0</code>,  </span></summary>
      

      ``4.10.0rc2-0``,  ``4.09.1-7``,  ``4.09.1-6``,  ``4.09.1-5``,  ``4.09.1-4``,  ``4.09.1-3``,  ``4.09.1-2``,  ``4.09.1-1``,  ``4.09.1-0``,  ``4.09-2``,  ``4.09-1``,  ``4.09-0``,  ``4.07b-0``

      
      .. raw:: html

         </details>
      

   
   :depends libgcc: ``>=13``
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>linux-aarch64</code>,  <code>osx-arm64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install trf

   and update with::

      mamba update trf

  To create a new environment, run::

      mamba create --name myenvname trf

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/trf:<tag>

   (see `trf/tags`_ for valid values for ``<tag>``)


.. |downloads_trf| image:: https://img.shields.io/conda/dn/bioconda/trf.svg?style=flat
   :target: https://anaconda.org/bioconda/trf
   :alt:   (downloads)
.. |docker_trf| image:: https://quay.io/repository/biocontainers/trf/status
   :target: https://quay.io/repository/biocontainers/trf
.. _`trf/tags`: https://quay.io/repository/biocontainers/trf?tab=tags


.. raw:: html

    <script>
        var package = "trf";
        var versions = ["4.10.0rc2","4.09.1","4.09.1","4.09.1","4.09.1"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trf/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/trf/README.html