recipe alpharaw

An open-source Python package to unify raw MS data access and storage

Homepage:

https://github.com/MannLabs/alpharaw

License:

APACHE / Apache-2.0

Recipe:

/alpharaw/meta.yaml

AlphaRaw provides unified access to raw mass spectrometry data from various instrument vendors, converting them to a standardized HDF5 format for downstream analysis in the AlphaPept ecosystem.

package alpharaw

versions:

0.5.0-0

depends alphabase:

>=1.5.0

depends alphatims:

depends h5py:

depends lxml:

depends numba:

depends numpy:

depends owlready2:

depends pandas:

depends pyteomics:

depends python:

>=3.8

depends pythonnet:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install alpharaw

and update with::

   mamba update alpharaw

To create a new environment, run:

mamba create --name myenvname alpharaw

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/alpharaw:<tag>

(see `alpharaw/tags`_ for valid values for ``<tag>``)

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