recipe multitax

A Python package for obtaining, parsing and exploring biological taxonomies.

Homepage:

https://github.com/pirovc/multitax

License:

MIT / MIT

Recipe:

/multitax/meta.yaml

MultiTax is a Python package that provides a standardised set of functions for downloading, parsing, filtering, exploring, translating, converting and writing multiple taxonomies, including GTDB, NCBI, Silva, Greengenes and Open Tree Taxonomy, as well as custom-formatted taxonomies.

package multitax

versions:

1.4.0-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.0-0

depends python:

>=3.10

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install multitax

and update with::

   mamba update multitax

To create a new environment, run:

mamba create --name myenvname multitax

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/multitax:<tag>

(see `multitax/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/multitax/README.html)