recipe pretextannotate

A package to annotate a pretext snapshot with size and chromosome information

Homepage:

https://github.com/sanger-tol/pretextannotate

License:

MIT

Recipe:

/pretextannotate/meta.yaml

This package uses API calls to NCBI to retrieve chromosome length data (this can instead be given on the CLI). This data is then used to annotate a pretext snapshot with chromosome names and sizes.

package pretextannotate

versions:

1.1.2-0,  1.1.0-0

depends pillow:

>=12.1.0

depends python:

>=3.12

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pretextannotate

and update with::

   mamba update pretextannotate

To create a new environment, run:

mamba create --name myenvname pretextannotate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pretextannotate:<tag>

(see `pretextannotate/tags`_ for valid values for ``<tag>``)

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