recipe realignpro

ReAlignPro: FASTA-to-MAF, MAF-to-BED, and TSV-to-figures utilities for comparative genomics.

Homepage:

https://github.com/chulbioinfo/ReAlignPro

License:

GPL-3.0-only

Recipe:

/realignpro/meta.yaml

package realignpro

versions:

0.1.1-0

depends lastz:

depends matplotlib-base:

>=3.5

depends muscle:

>=3.8.1551

depends python:

depends samtools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install realignpro

and update with::

   mamba update realignpro

To create a new environment, run:

mamba create --name myenvname realignpro

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/realignpro:<tag>

(see `realignpro/tags`_ for valid values for ``<tag>``)

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