recipe scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

Homepage:

https://github.com/aertslab/scenicplus

License:

OTHER

Recipe:

/scenicplus/meta.yaml

package scenicplus

versions:

1.0a2-0

depends numpy:

depends pandas:

depends pycistarget:

depends python:

>=3.8,<3.11.9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install scenicplus

and update with::

   mamba update scenicplus

To create a new environment, run:

mamba create --name myenvname scenicplus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/scenicplus:<tag>

(see `scenicplus/tags`_ for valid values for ``<tag>``)

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