recipe seqan

SeqAn is a C++ template library for the analysis of biological sequences.

Homepage:

https://www.seqan.de

Documentation:

https://seqan.readthedocs.io/en/seqan-v2.5.2

Developer docs:

https://github.com/seqan/seqan

License:

BSD / BSD-3-Clause

Recipe:

/seqan/meta.yaml

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.

package seqan

versions:

2.5.2-0,  2.4.0-2,  2.4.0-1,  2.4.0-0,  2.1.1-2,  2.1.1-1,  2.1.1-0

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seqan

and update with::

   mamba update seqan

To create a new environment, run:

mamba create --name myenvname seqan

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seqan:<tag>

(see `seqan/tags`_ for valid values for ``<tag>``)

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