- recipe simphyni
SimPhyni: a tool for phylogenetic trait simulation and inference.
- Homepage:
- License:
MIT
- Recipe:
- package simphyni¶
- versions:
1.0.0-0- depends annotated-types:
>=0.7.0- depends biopython:
>=1.85- depends certifi:
>=2025.1.31- depends charset-normalizer:
>=3.4.1- depends ete3:
>=3.1.3- depends idna:
>=3.10- depends itolapi:
>=4.1.5- depends jinja2:
>=3.1.6- depends joblib:
>=1.4.2- depends markupsafe:
>=3.0.2- depends matplotlib-base:
>=3.10.1- depends numba:
>=0.62.0- depends numpy:
>=2.2.3- depends pandas:
>=2.2.3- depends pastml:
>=1.9.50- depends pydantic:
>=2.10.6- depends pydantic-core:
>=2.27.2- depends python:
>=3.11,<3.13- depends requests:
>=2.32.3- depends scikit-learn:
>=1.6.1- depends scipy:
1.14.0.*- depends seaborn:
>=0.13.0,<0.14- depends snakemake:
>=9.10- depends statsmodels:
>=0.14.4- depends urllib3:
>=2.4.0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install simphyni and update with:: mamba update simphyni
To create a new environment, run:
mamba create --name myenvname simphyni
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/simphyni:<tag> (see `simphyni/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/simphyni/README.html)
