recipe zna

High-performance binary format for compressed nucleic acid sequences

Homepage:

https://github.com/mkiyer/zna

Documentation:

https://github.com/mkiyer/zna/blob/main/README.md

License:

GPL / GPL-3.0-only

Recipe:

/zna/meta.yaml

ZNA (Compressed Z-Nucleic N-Acid A) is a specialized binary format for storing DNA/RNA sequences with exceptional compression and I/O speed.

Features: - 135 MB/s roundtrip throughput (9.5x faster than Python baseline) - 2.8+ GB/s encoding/decoding for long reads - 3.7-4.0x compression ratio with Zstd - C++ acceleration with pure Python fallback - Block-based architecture for memory efficiency - Supports single-end, paired-end, and interleaved reads - Supports strand-specific protocols

package zna

(downloads) docker_zna

versions:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install zna

and update with::

   mamba update zna

To create a new environment, run:

mamba create --name myenvname zna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/zna:<tag>

(see `zna/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/zna/README.html)