name: bioconvert

channels:
- bioconda
- conda-forge
- defaults
- r

dependencies:
- python=3.7
- easydev
- biosniff
- colorlog
- deeptools
- gffread
- pandas
- biopython>=1.70
- mappy
- matplotlib-base
- networkx
- picard-slim
- pyyaml
- pysam
- pyexcel
- pyexcel-ods3
- pyexcel-xls
- pyexcel-xlsx
- pyBigWig
- xlrd
- py2bit
- statsmodels
- tqdm
- bamtools
- bcftools
- bedtools
- bedops
- dsrc
- go==1.10.3
- mosdepth
- pbzip2
- pigz
- plink
- sambamba
- samtools>=1.9
- seqtk
- seqkit
- squizz
- sra-tools
- ucsc-wigtobigwig
- ucsc-twobittofa
- ucsc-fatotwobit
- ucsc-bedgraphtobigwig
- ucsc-bigwigtobedgraph
- wiggletools
- sed
- mawk
- graphviz   # provides dot for RTD