Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error 
AGL	178	genome.wustl.edu	36	1	100122272	100122272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	100122272	100122272	G	A	SNP	AGL	NM_000028	human	genbank	54_36p	1	validated	missense	c.2317	p.E773K	1	NULL	"superfamily_(Trans)glycosidases,HMMPfam_GDE_C,superfamily_Six-hairpin glycosidases"	-	no_errors
SASS6	163786	genome.wustl.edu	36	1	100345785	100345785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	100345785	100345785	G	A	SNP	SASS6	NM_194292	human	genbank	54_36p	-1	validated	missense	c.1133	p.A378V	1	NULL	NULL	-	no_errors
LRRC39	127495	genome.wustl.edu	36	1	100390656	100390656	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	100390656	100390656	G	A	SNP	LRRC39	NM_144620	human	genbank	54_36p	-1	provisional	silent	c.825	p.F275	1	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
UBE4B	10277	genome.wustl.edu	36	1	10161345	10161345	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	10161345	10161345	G	C	SNP	UBE4B	NM_001105562	human	genbank	54_36p	1	reviewed	silent	c.3582	p.G1194	0.97	HMMPfam_Ufd2P_core	"HMMPfam_Ufd2P_core,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504"	-	no_errors
OLFM3	118427	genome.wustl.edu	36	1	102042416	102042416	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	102042416	102042416	A	C	SNP	OLFM3	NM_058170	human	genbank	54_36p	-1	validated	missense	c.1343	p.L448R	1	"HMMPfam_OLF,HMMSmart_SM00284"	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
OLFM3	118427	genome.wustl.edu	36	1	102063368	102063368	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	102063368	102063368	C	G	SNP	OLFM3	NM_058170	human	genbank	54_36p	-1	validated	missense	c.394	p.E132Q	1	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
COL11A1	1301	genome.wustl.edu	36	1	103119897	103119897	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	103119897	103119897	A	T	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.5020	p.S1674T	1	"HMMSmart_COLFI,HMMPfam_COLFI"	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI"	-	no_errors
COL11A1	1301	genome.wustl.edu	36	1	103264008	103264008	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	103264008	103264008	T	A	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.869	p.E290V	1	NULL	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
KIF1B	23095	genome.wustl.edu	36	1	10347892	10347892	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	10347892	10347892	T	C	SNP	KIF1B	NM_015074	human	genbank	54_36p	1	reviewed	splice_site	c.4374+2	e39+2	1	-	-	-	no_errors
AMY2A	279	genome.wustl.edu	36	1	103968324	103968324	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	103968324	103968324	G	T	SNP	AMY2A	NM_000699	human	genbank	54_36p	1	reviewed	missense	c.1304	p.G435V	1	"superfamily_SSF51011,HMMSmart_Aamy_C,HMMPfam_Alpha-amylase_C"	"superfamily_Glyco_hydro_cat,HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_SSF51011,HMMSmart_Aamy_C,HMMPfam_Alpha-amylase_C"	-	no_errors
LOC100129138	100129138	genome.wustl.edu	36	1	104417150	104417150	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	104417150	104417150	C	T	SNP	LOC100129138	XR_036957	human	genbank	54_36p	1	model	rna	NULL	NULL	0.92	-	-	-	no_errors
LOC126987	126987	genome.wustl.edu	36	1	106424948	106424948	+	RNA	SNP	A	T	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	106424948	106424948	A	T	SNP	LOC126987	XR_016153	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.25	-	-	-	no_errors
NTNG1	22854	genome.wustl.edu	36	1	107669038	107669038	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	107669038	107669038	C	G	SNP	NTNG1	NM_014917	human	genbank	54_36p	1	provisional	nonsense	c.858	p.Y286*	1	"HMMPfam_Laminin_N,HMMSmart_LamNT"	"HMMPfam_Laminin_N,HMMSmart_LamNT,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,HMMSmart_EGF,HMMPfam_EGF_2"	-	no_errors
VAV3	10451	genome.wustl.edu	36	1	108114816	108114816	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	108114816	108114816	C	A	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	nonsense	c.613	p.E205*	1	"superfamily_Calponin-homology domain CH-domain,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC25A24	29957	genome.wustl.edu	36	1	108499178	108499178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	108499178	108499178	C	T	SNP	SLC25A24	NM_013386	human	genbank	54_36p	-1	validated	missense	c.772	p.V258I	1	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	-	no_errors
C1orf59	113802	genome.wustl.edu	36	1	108998946	108998946	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	108998946	108998946	T	G	SNP	C1orf59	NM_001102592	human	genbank	54_36p	-1	validated	missense	c.313	p.N105H	0	superfamily_SSF53335	superfamily_SSF53335	-	no_errors
C1orf59	113802	genome.wustl.edu	36	1	109001645	109001645	+	Missense_Mutation	SNP	T	T	A	rs11540221	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109001645	109001645	T	A	SNP	C1orf59	NM_001102592	human	genbank	54_36p	-1	validated	missense	c.101	p.Q34L	1	superfamily_SSF53335	superfamily_SSF53335	-	no_errors
STXBP3	6814	genome.wustl.edu	36	1	109116808	109116808	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109116808	109116808	A	T	SNP	STXBP3	NM_007269	human	genbank	54_36p	1	validated	splice_site	c.439-2	e7-2	1	-	-	-	no_errors
STXBP3	6814	genome.wustl.edu	36	1	109123502	109123502	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109123502	109123502	G	C	SNP	STXBP3	NM_007269	human	genbank	54_36p	1	validated	silent	c.756	p.L252	1	"superfamily_Sec1-like,HMMPfam_Sec1"	"superfamily_Sec1-like,HMMPfam_Sec1"	-	no_errors
AKNAD1	254268	genome.wustl.edu	36	1	109193134	109193136	+	In_Frame_Del	DEL	AAG	AAG	-	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109193134	109193136	AAG	-	DEL	C1orf62	NM_152763	human	genbank	54_36p	-1	validated	in_frame_del	c.1105_1103	p.S368in_frame_del	0.633:0.633:0.697	NULL	NULL	"(deletion:cds_exon[109193057,109193205])"	no_errors
AKNAD1	254268	genome.wustl.edu	36	1	109196288	109196288	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109196288	109196288	C	T	SNP	C1orf62	NM_152763	human	genbank	54_36p	-1	validated	silent	c.522	p.P174	0	NULL	NULL	-	no_errors
C1orf127	148345	genome.wustl.edu	36	1	10940267	10940267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	10940267	10940267	C	G	SNP	C1orf127	NM_173507	human	genbank	54_36p	-1	predicted	missense	c.239	p.R80T	0.1	NULL	NULL	-	no_errors
C1orf194	127003	genome.wustl.edu	36	1	109457783	109457783	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109457783	109457783	C	A	SNP	C1orf194	ENST00000369949	human	ensembl	54_36p	-1	known	missense	c.40	p.A14S	0.02	NULL	NULL	-	no_errors
KIAA1324	57535	genome.wustl.edu	36	1	109547330	109547330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109547330	109547330	T	C	SNP	KIAA1324	ENST00000369939	human	ensembl	54_36p	1	known	missense	c.2773	p.C925R	0.97	NULL	"superfamily_Grow_fac_recept,superfamily_Man6php_recept"	-	no_stop_codon
MYBPHL	343263	genome.wustl.edu	36	1	109641076	109641076	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109641076	109641076	C	T	SNP	MYBPHL	NM_001010985	human	genbank	54_36p	-1	validated	silent	c.582	p.T194	0.14	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ATXN7L2	127002	genome.wustl.edu	36	1	109835204	109835204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109835204	109835204	C	T	SNP	ATXN7L2	NM_153340	human	genbank	54_36p	1	validated	missense	c.1496	p.P499L	0.53	NULL	HMMPfam_SCA7	-	no_errors
TARDBP	23435	genome.wustl.edu	36	1	11001432	11001432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11001432	11001432	C	T	SNP	TARDBP	NM_007375	human	genbank	54_36p	1	reviewed	missense	c.458	p.T153M	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
TARDBP	23435	genome.wustl.edu	36	1	11005039	11005039	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11005039	11005039	C	T	SNP	TARDBP	NM_007375	human	genbank	54_36p	1	reviewed	missense	c.986	p.A329V	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
FAM40A	85369	genome.wustl.edu	36	1	110389166	110389166	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110389166	110389166	G	A	SNP	FAM40A	NM_033088	human	genbank	54_36p	1	validated	silent	c.1359	p.T453	0.79	NULL	HMMPfam_N1221	-	no_errors
FAM40A	85369	genome.wustl.edu	36	1	110390856	110390856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110390856	110390856	C	T	SNP	FAM40A	NM_033088	human	genbank	54_36p	1	validated	missense	c.1448	p.A483V	0.95	NULL	HMMPfam_N1221	-	no_errors
UBL4B	164153	genome.wustl.edu	36	1	110456870	110456870	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110456870	110456870	A	G	SNP	UBL4B	NM_203412	human	genbank	54_36p	1	validated	missense	c.191	p.N64S	0.96	"HMMSmart_UBQ,superfamily_SSF54236,HMMPfam_ubiquitin"	"PatternScan_UBIQUITIN_1,HMMSmart_UBQ,superfamily_SSF54236,HMMPfam_ubiquitin"	-	no_errors
SLC6A17	388662	genome.wustl.edu	36	1	110539769	110539780	+	In_Frame_Del	DEL	TTCGTCCAGCGC	TTCGTCCAGCGC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TTCGTCCAGCGC	TTCGTCCAGCGC	TTCGTCCAGCGC	-	TTCGTCCAGCGC	TTCGTCCAGCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110539769	110539780	TTCGTCCAGCGC	-	DEL	SLC6A17	NM_001010898	human	genbank	54_36p	1	validated	in_frame_del	c.1531_1542	p.FVQR511in_frame_del	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.996	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	"(deletion:cds_exon[110539731,110539890])"	no_errors
RBM15	64783	genome.wustl.edu	36	1	110689748	110689748	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110689748	110689748	G	A	SNP	RBM15	NM_022768	human	genbank	54_36p	1	validated	silent	c.2928	p.L976	0	NULL	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,superfamily_SPOC domain-like,HMMPfam_SPOC"	-	no_errors
SLC16A4	9122	genome.wustl.edu	36	1	110725182	110725182	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110725182	110725182	C	T	SNP	SLC16A4	NM_004696	human	genbank	54_36p	-1	provisional	silent	c.471	p.L157	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC16A4	9122	genome.wustl.edu	36	1	110725868	110725868	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110725868	110725868	G	A	SNP	SLC16A4	NM_004696	human	genbank	54_36p	-1	provisional	missense	c.293	p.T98I	0.98	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
KCNA10	3744	genome.wustl.edu	36	1	110862267	110862267	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110862267	110862267	C	G	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	silent	c.666	p.S222	0.16	superfamily_SSF81324	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA10	3744	genome.wustl.edu	36	1	110862818	110862818	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110862818	110862818	C	G	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	missense	c.115	p.G39R	0.22	NULL	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KCNA2	3737	genome.wustl.edu	36	1	110948093	110948093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110948093	110948093	C	G	SNP	KCNA2	NM_004974	human	genbank	54_36p	-1	reviewed	missense	c.835	p.E279Q	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111017553	111017553	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111017553	111017553	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.1402	p.G468S	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111018078	111018078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111018078	111018078	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.877	p.D293N	1	superfamily_SSF81324	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111018156	111018156	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111018156	111018156	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.799	p.A267T	0.05	superfamily_SSF81324	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
C1orf103	55791	genome.wustl.edu	36	1	111292268	111292268	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111292268	111292268	G	C	SNP	C1orf103	NM_018372	human	genbank	54_36p	-1	validated	missense	c.2146	p.Q716E	0.69	NULL	NULL	-	no_errors
C1orf103	55791	genome.wustl.edu	36	1	111295733	111295733	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111295733	111295733	G	C	SNP	C1orf103	NM_018372	human	genbank	54_36p	-1	validated	silent	c.1296	p.T432	0	NULL	NULL	-	no_errors
DENND2D	79961	genome.wustl.edu	36	1	111543793	111543793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111543793	111543793	G	T	SNP	DENND2D	NM_024901	human	genbank	54_36p	-1	provisional	missense	c.218	p.P73H	1	"HMMPfam_uDENN,HMMSmart_SM00800"	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801"	-	no_errors
CHIA	27159	genome.wustl.edu	36	1	111662823	111662823	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111662823	111662823	G	A	SNP	CHIA	NM_201653	human	genbank	54_36p	1	validated	silent	c.915	p.E305	1	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,PatternScan_CHITINASE_18,superfamily_Chitinase insertion domain,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins,HMMPfam_CBM_14"	-	no_errors
OVGP1	5016	genome.wustl.edu	36	1	111759162	111759162	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111759162	111759162	G	A	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.1484	p.T495I	0	NULL	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	-	no_errors
OVGP1	5016	genome.wustl.edu	36	1	111770772	111770772	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111770772	111770772	G	C	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.70	p.L24V	1	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	-	no_errors
C1orf162	128346	genome.wustl.edu	36	1	111822162	111822162	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111822162	111822162	C	T	SNP	C1orf162	NM_174896	human	genbank	54_36p	1	predicted	missense	c.362	p.A121V	0.01	NULL	NULL	-	no_errors
ADORA3	140	genome.wustl.edu	36	1	111844530	111844530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111844530	111844530	C	A	SNP	ADORA3	NM_000677	human	genbank	54_36p	-1	reviewed	missense	c.522	p.M174I	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ADORA3	140	genome.wustl.edu	36	1	111847261	111847261	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111847261	111847261	A	T	SNP	ADORA3	NM_020683	human	genbank	54_36p	-1	reviewed	missense	c.239	p.F80Y	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF48726"	-	no_errors
C1orf183	55924	genome.wustl.edu	36	1	112071729	112071729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	112071729	112071729	G	C	SNP	C1orf183	NM_019099	human	genbank	54_36p	-1	validated	missense	c.278	p.P93R	0.05	NULL	NULL	-	no_errors
KCND3	3752	genome.wustl.edu	36	1	112131149	112131149	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	112131149	112131149	A	G	SNP	KCND3	NM_004980	human	genbank	54_36p	-1	reviewed	silent	c.1209	p.V403	0.98	superfamily_Voltage-gated potassium channels	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
MOV10	4343	genome.wustl.edu	36	1	113034079	113034079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113034079	113034079	G	A	SNP	MOV10	NM_020963	human	genbank	54_36p	1	validated	silent	c.672	p.S224	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ER_TARGET"	-	no_errors
MOV10	4343	genome.wustl.edu	36	1	113040590	113040590	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113040590	113040590	C	T	SNP	MOV10	NM_020963	human	genbank	54_36p	1	validated	missense	c.1892	p.S631L	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"PatternScan_ER_TARGET,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AKR7A2P1	246182	genome.wustl.edu	36	1	113268153	113268153	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113268153	113268153	G	C	SNP	AFARP1	NR_002796	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.81	-	-	-	pseudogene
LRIG2	9860	genome.wustl.edu	36	1	113442849	113442849	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113442849	113442849	G	A	SNP	LRIG2	NM_014813	human	genbank	54_36p	1	provisional	splice_site	c.1092-1	e9-1	1	-	-	-	no_errors
LRIG2	9860	genome.wustl.edu	36	1	113458810	113458810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113458810	113458810	G	A	SNP	LRIG2	NM_014813	human	genbank	54_36p	1	provisional	silent	c.2319	p.G773	0.98	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF52047,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
PHTF1	10745	genome.wustl.edu	36	1	114050766	114050766	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114050766	114050766	C	A	SNP	PHTF1	NM_006608	human	genbank	54_36p	-1	validated	missense	c.1371	p.L457F	1	NULL	NULL	-	no_errors
BCL2L15	440603	genome.wustl.edu	36	1	114230738	114230738	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114230738	114230738	T	G	SNP	BCL2L15	NM_001010922	human	genbank	54_36p	-1	validated	missense	c.193	p.N65H	0.96	NULL	NULL	-	no_errors
AP4B1	10717	genome.wustl.edu	36	1	114244294	114244294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114244294	114244294	C	T	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	missense	c.869	p.R290H	0.98	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N"	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N,HMMPfam_B2-adapt-app_C"	-	no_errors
AP4B1	10717	genome.wustl.edu	36	1	114245902	114245902	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114245902	114245902	A	C	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	missense	c.467	p.V156G	1	"HMMPfam_Adaptin_N,superfamily_ARM-type_fold"	"HMMPfam_Adaptin_N,HMMPfam_B2-adapt-app_C,superfamily_ARM-type_fold"	-	no_errors
HIPK1	204851	genome.wustl.edu	36	1	114284738	114284738	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114284738	114284738	C	G	SNP	HIPK1	NM_198268	human	genbank	54_36p	1	reviewed	nonsense	c.210	p.Y70*	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
HIPK1	204851	genome.wustl.edu	36	1	114285144	114285144	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114285144	114285144	A	G	SNP	HIPK1	NM_198268	human	genbank	54_36p	1	reviewed	missense	c.616	p.K206E	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
SYT6	148281	genome.wustl.edu	36	1	114441903	114441903	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114441903	114441903	G	C	SNP	SYT6	NM_205848	human	genbank	54_36p	-1	validated	missense	c.1229	p.S410C	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYT6	148281	genome.wustl.edu	36	1	114443407	114443407	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114443407	114443407	G	C	SNP	SYT6	NM_205848	human	genbank	54_36p	-1	validated	missense	c.941	p.P314R	1	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
AMPD1	270	genome.wustl.edu	36	1	115019836	115019836	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	115019836	115019836	A	G	SNP	AMPD1	NM_000036	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.I506T	1	"superfamily_SSF51556,HMMPfam_A_deaminase"	"superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE"	-	no_errors
AMPD1	270	genome.wustl.edu	36	1	115033075	115033075	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	115033075	115033075	T	C	SNP	AMPD1	ENST00000393268	human	ensembl	54_36p	-1	known	missense	c.4	p.I2V	0.05	NULL	"HMMPfam_A_deaminase,PatternScan_A_DEAMINASE,superfamily_Metallo-dependent hydrolases"	-	no_start_codon
CSDE1	7812	genome.wustl.edu	36	1	115083932	115083932	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	115083932	115083932	T	G	SNP	CSDE1	NM_001007553	human	genbank	54_36p	-1	validated	missense	c.103	p.T35P	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357"	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK,PatternScan_PEROXIDASE_2"	-	no_errors
PTCHD2	57540	genome.wustl.edu	36	1	11518272	11518272	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11518272	11518272	C	T	SNP	PTCHD2	NM_020780	human	genbank	54_36p	1	validated	missense	c.3800	p.P1267L	1	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
SLC22A15	55356	genome.wustl.edu	36	1	116363787	116363787	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116363787	116363787	G	C	SNP	SLC22A15	NM_018420	human	genbank	54_36p	1	validated	missense	c.326	p.G109A	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	-	no_errors
ATP1A1	476	genome.wustl.edu	36	1	116734487	116734487	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116734487	116734487	C	T	SNP	ATP1A1	NM_000701	human	genbank	54_36p	1	reviewed	missense	c.1153	p.R385W	1	"superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	###############################################################################################################################################################################################################################################################	-	no_errors
IGSF3	3321	genome.wustl.edu	36	1	116933217	116933217	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116933217	116933217	T	C	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.2122	p.T708A	1	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig"	-	no_errors
IGSF3	3321	genome.wustl.edu	36	1	116960585	116960585	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116960585	116960585	G	A	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.61	p.R21W	1	"HMMPfam_V-set,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
GDAP2	54834	genome.wustl.edu	36	1	118222153	118222153	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	118222153	118222153	C	T	SNP	GDAP2	NM_017686	human	genbank	54_36p	-1	validated	splice_site	c.1446+1	e12+1	1	-	-	-	no_errors
SPAG17	200162	genome.wustl.edu	36	1	118307999	118307999	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	118307999	118307999	T	C	SNP	SPAG17	NM_206996	human	genbank	54_36p	-1	validated	silent	c.6618	p.T2206	0.17	NULL	NULL	-	no_errors
NPPB	4879	genome.wustl.edu	36	1	11841068	11841068	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11841068	11841068	C	A	SNP	NPPB	NM_002521	human	genbank	54_36p	-1	reviewed	nonsense	c.178	p.E60*	0	HMMPfam_ANP	"HMMPfam_ANP,HMMSmart_NAT_PEP,PatternScan_NATRIURETIC_PEPTIDE"	-	no_errors
PLOD1	5351	genome.wustl.edu	36	1	11939569	11939569	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11939569	11939569	G	A	SNP	PLOD1	NM_000302	human	genbank	54_36p	1	reviewed	missense	c.652	p.V218M	0.99	NULL	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE"	-	no_errors
PLOD1	5351	genome.wustl.edu	36	1	11946867	11946867	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	11946867	11946867	C	T	SNP	PLOD1	NM_000302	human	genbank	54_36p	1	reviewed	silent	c.1251	p.N417	1	NULL	"PatternScan_LYS_HYDROXYLASE,HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc"	-	no_errors
LOC343495	343495	genome.wustl.edu	36	1	119563486	119563486	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119563486	119563486	C	T	SNP	LOC343495	XR_016540	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HSD3B2	3284	genome.wustl.edu	36	1	119766708	119766708	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119766708	119766708	A	T	SNP	HSD3B2	NM_000198	human	genbank	54_36p	1	validated	missense	c.1061	p.E354V	0.8	superfamily_NAD(P)-binding Rossmann-fold domains	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD"	-	no_errors
LOC391073	391073	genome.wustl.edu	36	1	119778664	119778664	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119778664	119778664	G	T	SNP	LOC391073	XR_016552	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC391075	391075	genome.wustl.edu	36	1	119806459	119806459	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119806459	119806459	A	T	SNP	LOC391075	XR_016557	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HSD3B1	3283	genome.wustl.edu	36	1	119858714	119858714	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119858714	119858714	G	T	SNP	HSD3B1	NM_000862	human	genbank	54_36p	1	validated	missense	c.1045	p.A349S	1	superfamily_NAD(P)-bd	"superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD"	-	no_errors
MFN2	9927	genome.wustl.edu	36	1	11988549	11988549	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11988549	11988549	C	T	SNP	MFN2	NM_014874	human	genbank	54_36p	1	reviewed	missense	c.1690	p.R564W	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin"	-	no_errors
LOC391081	391081	genome.wustl.edu	36	1	119953103	119953103	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119953103	119953103	T	A	SNP	LOC391081	XR_017445	human	genbank	54_36p	1	model	rna	NULL	NULL	0.07	-	-	-	pseudogene
ZNF697	90874	genome.wustl.edu	36	1	119970088	119970088	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119970088	119970088	C	T	SNP	ZNF697	NM_001080470	human	genbank	54_36p	-1	provisional	silent	c.159	p.P53	0	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
HMGCS2	3158	genome.wustl.edu	36	1	120097460	120097460	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	120097460	120097460	G	A	SNP	HMGCS2	NM_005518	human	genbank	54_36p	-1	validated	silent	c.1260	p.F420	0.96	"HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like"	"HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like,PatternScan_HMG_COA_SYNTHASE,HMMPfam_HMG_CoA_synt_C"	-	no_errors
MIIP	60672	genome.wustl.edu	36	1	12012533	12012533	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	12012533	12012533	C	T	SNP	IIP45	NM_021933	human	genbank	54_36p	1	validated	silent	c.840	p.H280	0.32	NULL	NULL	-	no_errors
REG4	83998	genome.wustl.edu	36	1	120138772	120138772	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	120138772	120138772	G	A	SNP	REG4	NM_032044	human	genbank	54_36p	-1	validated	nonsense	c.469	p.R157*	0.02	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
NOTCH2	4853	genome.wustl.edu	36	1	120292618	120292618	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	120292618	120292618	T	C	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	silent	c.2694	p.E898	0.71	"superfamily_SSF57196,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
PRAMEF12	390999	genome.wustl.edu	36	1	12757692	12757692	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	12757692	12757692	C	G	SNP	PRAMEF12	NM_001080830	human	genbank	54_36p	1	provisional	missense	c.95	p.P32R	0.18	NULL	superfamily_SSF52047	-	no_errors
PRAMEF12	390999	genome.wustl.edu	36	1	12759868	12759868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	12759868	12759868	C	A	SNP	PRAMEF12	NM_001080830	human	genbank	54_36p	1	provisional	missense	c.991	p.L331M	0.03	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF4	400735	genome.wustl.edu	36	1	12864794	12864794	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	12864794	12864794	A	G	SNP	PRAMEF4	NM_001009611	human	genbank	54_36p	-1	validated	missense	c.343	p.W115R	0.09	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF20	645425	genome.wustl.edu	36	1	13615538	13615538	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	13615538	13615538	G	C	SNP	PRAMEF20	NM_001099852	human	genbank	54_36p	1	provisional	missense	c.140	p.R47T	0	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PPIAL4G	644591	genome.wustl.edu	36	1	142558964	142558964	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	142558964	142558964	C	T	SNP	PPIAL4G	ENST00000369380	human	ensembl	54_36p	-1	known	silent	c.408	p.V136	1	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase"	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
NOTCH2NL	388677	genome.wustl.edu	36	1	143984619	143984619	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	143984619	143984619	C	A	SNP	NOTCH2NL	NM_203458	human	genbank	54_36p	1	validated	missense	c.116	p.T39N	1	"HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF"	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL"	-	no_errors
TXNIP	10628	genome.wustl.edu	36	1	144151420	144151420	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144151420	144151420	A	G	SNP	TXNIP	NM_006472	human	genbank	54_36p	1	validated	missense	c.497	p.K166R	1	superfamily_Ig_E-set	"superfamily_Ig_E-set,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C"	-	no_errors
TXNIP	10628	genome.wustl.edu	36	1	144151427	144151427	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144151427	144151427	T	A	SNP	TXNIP	NM_006472	human	genbank	54_36p	1	validated	silent	c.504	p.V168	1	superfamily_Ig_E-set	"HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_Ig_E-set"	-	no_errors
LIX1L	128077	genome.wustl.edu	36	1	144209961	144209961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	144209961	144209961	G	C	SNP	LIX1L	NM_153713	human	genbank	54_36p	1	provisional	missense	c.840	p.W280C	1	NULL	NULL	-	no_errors
ITGA10	8515	genome.wustl.edu	36	1	144247129	144247129	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144247129	144247129	G	C	SNP	ITGA10	NM_003637	human	genbank	54_36p	1	reviewed	missense	c.1960	p.V654L	0	"HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144272487	144272487	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144272487	144272487	C	G	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.818	p.P273R	0.45	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144273633	144273633	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144273633	144273633	A	T	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.1964	p.E655V	0.51	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
POLR3C	10623	genome.wustl.edu	36	1	144319562	144319562	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144319562	144319562	A	G	SNP	POLR3C	NM_006468	human	genbank	54_36p	-1	provisional	silent	c.492	p.P164	0.09	HMMPfam_RNA_pol_Rpc82	"HMMPfam_RNA_pol_Rpc82,HMMPfam_HTH_9"	-	no_errors
FMO5	2330	genome.wustl.edu	36	1	145163196	145163196	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	T	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	145163196	145163196	G	T	SNP	FMO5	NM_001461	human	genbank	54_36p	-1	reviewed	missense	c.50	p.S17Y	0.01	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
CHD1L	9557	genome.wustl.edu	36	1	145233735	145233735	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145233735	145233735	G	A	SNP	CHD1L	NM_004284	human	genbank	54_36p	1	validated	splice_site	c.2616-1	e23-1	1	-	-	-	no_errors
BCL9	607	genome.wustl.edu	36	1	145558344	145558344	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	G	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA		dbGAP	Illumina GAIIx	1	145558344	145558344	C	G	SNP	BCL9	NM_004326	human	genbank	54_36p	1	reviewed	missense	c.1759	p.L587V	1	NULL	NULL	-	no_errors
BCL9	607	genome.wustl.edu	36	1	145559255	145559255	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145559255	145559255	G	T	SNP	BCL9	NM_004326	human	genbank	54_36p	1	reviewed	silent	c.2670	p.S890	0.97	NULL	NULL	-	no_errors
ACP6	51205	genome.wustl.edu	36	1	145593003	145593004	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	145593003	145593004	-	A	INS	ACP6	NM_016361	human	genbank	54_36p	-1	validated	frame_shift_ins	c.710_709	p.D237fs	0.040:0.058	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A"	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1"	-	no_errors
ACP6	51205	genome.wustl.edu	36	1	145593008	145593008	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145593008	145593008	C	A	SNP	ACP6	NM_016361	human	genbank	54_36p	-1	validated	silent	c.705	p.V235	0.78	"HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like"	"HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_Phosphoglycerate mutase-like"	-	no_errors
ACP6	51205	genome.wustl.edu	36	1	145598404	145598404	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145598404	145598404	G	A	SNP	ACP6	NM_016361	human	genbank	54_36p	-1	validated	silent	c.330	p.Y110	0.36	"HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like"	"HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_Phosphoglycerate mutase-like"	-	no_errors
GJA8	2703	genome.wustl.edu	36	1	145847875	145847875	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145847875	145847875	A	G	SNP	GJA8	NM_005267	human	genbank	54_36p	1	validated	missense	c.1169	p.K390R	0.44	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin50"	-	no_errors
HIST2H3PS2	440686	genome.wustl.edu	36	1	147667142	147667142	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	147667142	147667142	G	A	SNP	HIST2H3PS2	ENST00000369176	human	ensembl	54_36p	-1	known	missense	c.25	p.R9C	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_H3,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
FCGR1A	2209	genome.wustl.edu	36	1	148028407	148028407	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148028407	148028407	T	C	SNP	FCGR1A	NM_000566	human	genbank	54_36p	1	reviewed	missense	c.733	p.Y245H	0.58	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
HIST2H2BE	8349	genome.wustl.edu	36	1	148124586	148124586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148124586	148124586	C	G	SNP	HIST2H2BE	NM_003528	human	genbank	54_36p	-1	reviewed	missense	c.229	p.E77Q	1	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone"	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST2H2AB	317772	genome.wustl.edu	36	1	148125788	148125788	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148125788	148125788	G	T	SNP	HIST2H2AB	NM_175065	human	genbank	54_36p	-1	reviewed	silent	c.303	p.V101	1	"superfamily_Histone-fold,HMMSmart_H2A"	"superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
BOLA1	51027	genome.wustl.edu	36	1	148138293	148138293	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148138293	148138293	G	C	SNP	BOLA1	NM_016074	human	genbank	54_36p	1	validated	missense	c.57	p.L19F	0.05	superfamily_BolA-like	"superfamily_BolA-like,HMMPfam_BolA"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147385	148147385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148147385	148147385	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	missense	c.1362	p.W454C	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147730	148147730	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148147730	148147730	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.1197	p.T399	0.01	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147977	148147977	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148147977	148147977	T	G	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.1179	p.S393	0.99	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148149002	148149002	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148149002	148149002	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	missense	c.955	p.G319W	1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148151531	148151531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148151531	148151531	G	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.486	p.G162	1	superfamily_MFS general substrate transporter	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
MTMR11	10903	genome.wustl.edu	36	1	148174218	148174218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148174218	148174218	C	G	SNP	MTMR11	ENST00000361405	human	ensembl	54_36p	-1	known	missense	c.84	p.E28D	1	superfamily_PH domain-like	superfamily_PH domain-like	-	no_start_codon
CA14	23632	genome.wustl.edu	36	1	148501180	148501180	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148501180	148501180	G	A	SNP	CA14	NM_012113	human	genbank	54_36p	1	reviewed	splice_site	c.257-1	e4-1	1	-	-	-	no_errors
APH1A	51107	genome.wustl.edu	36	1	148507029	148507029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148507029	148507029	G	C	SNP	APH1A	NM_001077628	human	genbank	54_36p	-1	validated	missense	c.236	p.S79C	1	HMMPfam_Aph-1	HMMPfam_Aph-1	-	no_errors
PRPF3	9129	genome.wustl.edu	36	1	148574237	148574237	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148574237	148574237	C	A	SNP	PRPF3	NM_004698	human	genbank	54_36p	1	reviewed	missense	c.936	p.D312E	1	HMMPfam_PRP3	"superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI,HMMPfam_PRP3"	-	no_errors
ADAMTSL4	54507	genome.wustl.edu	36	1	148794658	148794658	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148794658	148794658	G	A	SNP	ADAMTSL4	NM_019032	human	genbank	54_36p	1	reviewed	missense	c.1364	p.R455H	0.94	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
GOLPH3L	55204	genome.wustl.edu	36	1	148900984	148900984	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148900984	148900984	A	T	SNP	GOLPH3L	NM_018178	human	genbank	54_36p	-1	reviewed	missense	c.360	p.D120E	1	HMMPfam_GPP34	HMMPfam_GPP34	-	no_errors
HORMAD1	84072	genome.wustl.edu	36	1	148945692	148945692	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148945692	148945692	C	G	SNP	HORMAD1	NM_032132	human	genbank	54_36p	-1	provisional	missense	c.765	p.R255S	0.94	NULL	"superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA"	-	no_errors
HORMAD1	84072	genome.wustl.edu	36	1	148947432	148947432	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148947432	148947432	A	T	SNP	HORMAD1	NM_032132	human	genbank	54_36p	-1	provisional	silent	c.471	p.I157	1	"HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2"	"HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2"	-	no_errors
SETDB1	9869	genome.wustl.edu	36	1	149188556	149188556	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149188556	149188556	C	G	SNP	SETDB1	NM_012432	human	genbank	54_36p	1	reviewed	missense	c.1511	p.S504C	1	NULL	"HMMSmart_TUDOR,HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
SCNM1	79005	genome.wustl.edu	36	1	149407395	149407395	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149407395	149407395	C	A	SNP	SCNM1	NM_024041	human	genbank	54_36p	1	validated	missense	c.550	p.P184T	0.97	NULL	NULL	-	no_errors
TMOD4	29765	genome.wustl.edu	36	1	149410549	149410549	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149410549	149410549	C	A	SNP	TMOD4	NM_013353	human	genbank	54_36p	-1	validated	missense	c.710	p.G237V	1	"HMMPfam_Tropomodulin,superfamily_RNI-like"	"HMMPfam_Tropomodulin,superfamily_RNI-like"	-	no_errors
PIP5K1A	8394	genome.wustl.edu	36	1	149471789	149471789	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149471789	149471789	C	G	SNP	PIP5K1A	NM_003557	human	genbank	54_36p	1	validated	missense	c.586	p.P196A	1	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors
ZNF687	57592	genome.wustl.edu	36	1	149525896	149525896	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149525896	149525896	G	A	SNP	ZNF687	NM_020832	human	genbank	54_36p	1	provisional	missense	c.505	p.E169K	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
PI4KB	5298	genome.wustl.edu	36	1	149555082	149555082	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149555082	149555082	A	C	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.536	p.F179C	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
RFX5	5993	genome.wustl.edu	36	1	149581309	149581309	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149581309	149581309	C	T	SNP	RFX5	NM_000449	human	genbank	54_36p	-1	reviewed	missense	c.1828	p.D610N	1	NULL	"HMMPfam_RFX_DNA_binding,superfamily_SSF46785"	-	no_errors
PSMB4	5692	genome.wustl.edu	36	1	149639206	149639206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149639206	149639206	G	T	SNP	PSMB4	NM_002796	human	genbank	54_36p	1	reviewed	missense	c.266	p.R89L	0.96	"superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	"superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
POGZ	23126	genome.wustl.edu	36	1	149644636	149644636	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149644636	149644636	C	A	SNP	POGZ	NM_015100	human	genbank	54_36p	-1	reviewed	missense	c.3499	p.G1167C	1	HMMPfam_DDE	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMPfam_CenpB-DNA-bind,superfamily_Homeodomain-like,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
POGZ	23126	genome.wustl.edu	36	1	149667379	149667379	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149667379	149667379	G	C	SNP	POGZ	NM_015100	human	genbank	54_36p	-1	reviewed	missense	c.703	p.L235V	1	NULL	"HMMPfam_DDE,HMMSmart_SM00674,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149774954	149774954	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149774954	149774954	G	A	SNP	CGN	NM_020770	human	genbank	54_36p	1	validated	silent	c.3153	p.E1051	0.97	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_tail_1	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149775932	149775932	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149775932	149775932	G	A	SNP	CGN	NM_020770	human	genbank	54_36p	1	validated	missense	c.3409	p.E1137K	1	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_tail_1	-	no_errors
THEM5	284486	genome.wustl.edu	36	1	150090247	150090247	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150090247	150090247	C	A	SNP	THEM5	NM_182578	human	genbank	54_36p	-1	validated	nonsense	c.370	p.G124*	0.97	superfamily_SSF54637	"superfamily_SSF54637,HMMPfam_4HBT"	-	no_errors
TCHHL1	126637	genome.wustl.edu	36	1	150326132	150326132	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150326132	150326132	T	A	SNP	TCHHL1	NM_001008536	human	genbank	54_36p	-1	provisional	missense	c.650	p.K217M	0	NULL	"PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100"	-	no_errors
TCHH	7062	genome.wustl.edu	36	1	150346934	150346934	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150346934	150346934	T	C	SNP	TCHH	NM_007113	human	genbank	54_36p	-1	provisional	missense	c.5383	p.R1795G	0.03	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1"	-	no_errors
TCHH	7062	genome.wustl.edu	36	1	150348232	150348232	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150348232	150348232	A	T	SNP	TCHH	NM_007113	human	genbank	54_36p	-1	provisional	missense	c.4085	p.F1362Y	0	NULL	"PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
HRNR	388697	genome.wustl.edu	36	1	150453461	150453461	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	150453461	150453461	C	T	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.7268	p.R2423Q	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150542311	150542311	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150542311	150542311	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.11675	p.R3892Q	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150543537	150543537	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150543537	150543537	T	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.10449	p.R3483S	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150544733	150544733	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150544733	150544733	C	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.9253	p.G3085R	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545961	150545961	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	150545961	150545961	A	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.8025	p.A2675	0	HMMPfam_Filaggrin	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150547933	150547933	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150547933	150547933	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.6053	p.R2018K	0	HMMPfam_Filaggrin	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150553539	150553539	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150553539	150553539	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.447	p.G149	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150591310	150591310	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150591310	150591310	T	G	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.5576	p.Q1859P	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150592525	150592525	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150592525	150592525	T	C	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.4361	p.H1454R	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150593530	150593530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150593530	150593530	C	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.3356	p.G1119V	0.03	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150594500	150594500	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150594500	150594500	G	T	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.2386	p.Q796K	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150595558	150595558	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150595558	150595558	T	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.1328	p.E443V	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
CRNN	49860	genome.wustl.edu	36	1	150650016	150650016	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150650016	150650016	C	T	SNP	CRNN	NM_016190	human	genbank	54_36p	-1	reviewed	missense	c.166	p.E56K	0.98	"superfamily_SSF47473,HMMPfam_efhand"	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
LCE3E	353145	genome.wustl.edu	36	1	150805082	150805082	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150805082	150805082	C	T	SNP	LCE3E	NM_178435	human	genbank	54_36p	-1	validated	missense	c.227	p.G76D	0.43	NULL	NULL	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	150998716	150998716	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150998716	150998716	C	T	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	missense	c.28	p.R10C	0.01	NULL	NULL	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	151000349	151000349	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151000349	151000349	G	A	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	missense	c.1661	p.R554Q	0.01	NULL	NULL	-	no_errors
LCE1A	353131	genome.wustl.edu	36	1	151066620	151066620	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151066620	151066620	C	T	SNP	LCE1A	NM_178348	human	genbank	54_36p	1	validated	silent	c.48	p.C16	0.86	NULL	NULL	-	no_errors
IVL	3713	genome.wustl.edu	36	1	151149202	151149202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151149202	151149202	A	C	SNP	IVL	NM_005547	human	genbank	54_36p	1	reviewed	missense	c.305	p.E102A	0	NULL	"PatternScan_INVOLUCRIN,HMMPfam_Involucrin_N,HMMPfam_Involucrin"	-	no_errors
LELP1	149018	genome.wustl.edu	36	1	151444086	151444086	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151444086	151444086	C	T	SNP	LELP1	NM_001010857	human	genbank	54_36p	1	provisional	silent	c.279	p.P93	0.95	NULL	NULL	-	no_errors
PGLYRP3	114771	genome.wustl.edu	36	1	151549717	151549717	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151549717	151549717	C	T	SNP	PGLYRP3	NM_052891	human	genbank	54_36p	-1	provisional	missense	c.49	p.A17T	0.02	NULL	"superfamily_Amidase_2,HMMSmart_PGRP,HMMPfam_Amidase_2,HMMSmart_Ami_2"	-	no_errors
PGLYRP4	57115	genome.wustl.edu	36	1	151584401	151584401	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151584401	151584401	G	A	SNP	PGLYRP4	NM_020393	human	genbank	54_36p	-1	validated	missense	c.221	p.T74M	0	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	-	no_errors
NPR1	4881	genome.wustl.edu	36	1	151926302	151926302	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151926302	151926302	C	A	SNP	NPR1	NM_000906	human	genbank	54_36p	1	validated	silent	c.1938	p.G646	0.76	"HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
INTS3	65123	genome.wustl.edu	36	1	152009314	152009314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152009314	152009314	G	C	SNP	INTS3	NM_023015	human	genbank	54_36p	1	validated	missense	c.2406	p.W802C	1	NULL	HMMPfam_DUF2356	-	no_errors
SLC27A3	11000	genome.wustl.edu	36	1	152017344	152017344	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152017344	152017344	C	A	SNP	SLC27A3	NM_024330	human	genbank	54_36p	1	provisional	silent	c.1386	p.R462	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
DENND4B	9909	genome.wustl.edu	36	1	152169831	152169831	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152169831	152169831	T	A	SNP	DENND4B	NM_014856	human	genbank	54_36p	-1	validated	missense	c.4241	p.E1414V	1	NULL	"HMMSmart_uDENN,HMMPfam_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_PPR"	-	no_errors
DENND4B	9909	genome.wustl.edu	36	1	152170166	152170167	+	Splice_Site	INS	-	-	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152170166	152170167	-	G	INS	DENND4B	NM_014856	human	genbank	54_36p	-1	validated	splice_site_ins	c.3997-3_3997-2	e24-2	0.995:0.981	-	-	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152262372	152262372	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152262372	152262372	A	T	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.4148	p.V1383E	0.99	NULL	"superfamily_Invasin_intimin,HMMSmart_BID_2,HMMPfam_Big_2"	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152285218	152285218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152285218	152285218	C	A	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.3647	p.W1216L	1	NULL	"HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin"	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152299686	152299686	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152299686	152299686	T	G	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.2804	p.Q935P	0.11	NULL	"HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin"	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152365549	152365549	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152365549	152365549	T	C	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	silent	c.1200	p.T400	0	NULL	"HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin"	-	no_errors
UBAP2L	9898	genome.wustl.edu	36	1	152490376	152490376	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152490376	152490376	G	C	SNP	UBAP2L	NM_014847	human	genbank	54_36p	1	validated	missense	c.1449	p.Q483H	1	NULL	"HMMPfam_UBA,HMMSmart_SM00165"	-	no_errors
KIAA1026	23254	genome.wustl.edu	36	1	15264712	15264712	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15264712	15264712	G	T	SNP	KIAA1026	NM_201628	human	genbank	54_36p	1	validated	splice_site	c.1099-1	e8-1	1	-	-	-	no_errors
IL6R	3570	genome.wustl.edu	36	1	152673740	152673740	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152673740	152673740	G	A	SNP	IL6R	NM_000565	human	genbank	54_36p	1	reviewed	missense	c.580	p.V194I	0.05	"superfamily_Fibronectin type III,HMMPfam_IL6Ra-bind"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMPfam_IL6Ra-bind,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
SHC1	6464	genome.wustl.edu	36	1	153209367	153209367	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153209367	153209367	G	A	SNP	SHC1	NM_183001	human	genbank	54_36p	-1	validated	missense	c.260	p.A87V	0.1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
FLAD1	80308	genome.wustl.edu	36	1	153227424	153227424	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153227424	153227424	G	C	SNP	FLAD1	NM_025207	human	genbank	54_36p	1	reviewed	missense	c.592	p.E198Q	0.31	"superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_MoCF_biosynth"	"PatternScan_CARBAMOYLTRANSFERASE,superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_MoCF_biosynth,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_PAPS_reduct"	-	no_errors
DCST2	127579	genome.wustl.edu	36	1	153269192	153269192	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153269192	153269192	A	C	SNP	DCST2	NM_144622	human	genbank	54_36p	-1	validated	missense	c.1169	p.I390S	1	HMMPfam_DC_STAMP	HMMPfam_DC_STAMP	-	no_errors
ADAM15	8751	genome.wustl.edu	36	1	153296343	153296343	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153296343	153296343	C	T	SNP	ADAM15	NM_207197	human	genbank	54_36p	1	reviewed	missense	c.1204	p.L402F	0.99	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
RAG1AP1	55974	genome.wustl.edu	36	1	153377158	153377158	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153377158	153377158	G	A	SNP	RAG1AP1	NM_018845	human	genbank	54_36p	1	validated	nonsense	c.524	p.W175*	1	HMMPfam_MtN3_slv	HMMPfam_MtN3_slv	-	no_errors
TRIM46	80128	genome.wustl.edu	36	1	153421128	153421128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153421128	153421128	C	G	SNP	TRIM46	NM_025058	human	genbank	54_36p	1	validated	missense	c.1765	p.Q589E	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
SCAMP3	10067	genome.wustl.edu	36	1	153492747	153492747	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	153492747	153492747	G	A	SNP	SCAMP3	NM_005698	human	genbank	54_36p	-1	reviewed	nonsense	c.985	p.R329*	1	NULL	HMMPfam_SCAMP	-	no_errors
HCN3	57657	genome.wustl.edu	36	1	153520961	153520961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153520961	153520961	C	T	SNP	HCN3	NM_020897	human	genbank	54_36p	1	validated	missense	c.878	p.S293L	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	-	no_errors
ASH1L	55870	genome.wustl.edu	36	1	153614790	153614792	+	In_Frame_Del	DEL	TCA	TCA	-	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	TCA	TCA	TCA	-	TCA	TCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153614790	153614792	TCA	-	DEL	ASH1L	NM_018489	human	genbank	54_36p	-1	reviewed	in_frame_del	c.6238_6236	p.D2079in_frame_del	1.000:1.000:1.000	superfamily_SET domain	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[153614696,153614804])"	no_errors
YY1AP1	55249	genome.wustl.edu	36	1	153905118	153905118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153905118	153905118	G	C	SNP	YY1AP1	NM_139118	human	genbank	54_36p	-1	reviewed	missense	c.941	p.T314S	0.12	NULL	NULL	-	no_errors
GON4L	54856	genome.wustl.edu	36	1	153993466	153993466	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153993466	153993466	C	T	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	silent	c.5424	p.L1808	1	NULL	"superfamily_PAH2 domain,HMMPfam_PAH,superfamily_Homeodomain-like"	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154363312	154363312	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154363312	154363312	C	T	SNP	LMNA	ENST00000368297	human	ensembl	54_36p	1	known	missense	c.95	p.A32V	0.1	NULL	"HMMPfam_Filament,PatternScan_IF,superfamily_SSF74853,HMMPfam_IF_tail"	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154370932	154370932	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154370932	154370932	A	G	SNP	LMNA	NM_170707	human	genbank	54_36p	1	reviewed	missense	c.628	p.I210V	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154371347	154371347	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154371347	154371347	T	G	SNP	LMNA	NM_170707	human	genbank	54_36p	1	reviewed	missense	c.767	p.V256G	1	HMMPfam_Filament	"HMMPfam_IF_tail,HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain"	-	no_errors
SMG5	23381	genome.wustl.edu	36	1	154499939	154499939	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154499939	154499939	G	A	SNP	SMG5	NM_015327	human	genbank	54_36p	-1	validated	silent	c.1902	p.R634	0.46	NULL	"HMMPfam_EST1,HMMSmart_PINc"	-	no_errors
VHLL	391104	genome.wustl.edu	36	1	154535367	154535367	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154535367	154535367	A	C	SNP	VHLL	NM_001004319	human	genbank	54_36p	-1	provisional	missense	c.238	p.Y80D	0.53	"HMMPfam_VHL,superfamily_SSF49468"	"HMMPfam_VHL,superfamily_SSF49468"	-	no_errors
MEF2D	4209	genome.wustl.edu	36	1	154718872	154718872	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154718872	154718872	G	C	SNP	MEF2D	NM_005920	human	genbank	54_36p	-1	provisional	missense	c.239	p.T80S	1	superfamily_SRF-like	"HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF"	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154788499	154788499	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154788499	154788499	G	C	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.1461	p.A487	0.95	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C"	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154799639	154799639	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154799639	154799639	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.709	p.L237	1	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540"	-	no_errors
NES	10763	genome.wustl.edu	36	1	154906180	154906180	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154906180	154906180	C	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.4424	p.G1475D	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
NES	10763	genome.wustl.edu	36	1	154907174	154907174	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154907174	154907174	G	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.3430	p.L1144I	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
INSRR	3645	genome.wustl.edu	36	1	155090326	155090326	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155090326	155090326	G	C	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.479	p.P160R	0.58	superfamily_SSF52058	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	genome.wustl.edu	36	1	155104547	155104547	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155104547	155104547	T	C	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	silent	c.456	p.C152	1	"superfamily_L domain-like,HMMSmart_SM00082"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	genome.wustl.edu	36	1	155115634	155115634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155115634	155115634	C	T	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	silent	c.1902	p.V634	0.99	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf92	149499	genome.wustl.edu	36	1	155164045	155164045	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155164045	155164045	G	A	SNP	C1orf92	NM_144702	human	genbank	54_36p	1	validated	missense	c.151	p.D51N	1	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
ARHGEF11	9826	genome.wustl.edu	36	1	155176012	155176012	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155176012	155176012	C	T	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	missense	c.4048	p.D1350N	0.14	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
ARHGEF11	9826	genome.wustl.edu	36	1	155192962	155192962	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155192962	155192962	G	A	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	silent	c.1545	p.A515	1	"HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam"	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729"	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155764297	155764297	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155764297	155764297	C	T	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	missense	c.1694	p.R565H	0.75	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155779292	155779292	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155779292	155779292	A	C	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	silent	c.1104	p.A368	0	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FCRL4	83417	genome.wustl.edu	36	1	155824329	155824329	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155824329	155824329	C	A	SNP	FCRL4	NM_031282	human	genbank	54_36p	-1	provisional	missense	c.512	p.G171V	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL3	115352	genome.wustl.edu	36	1	155915181	155915181	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155915181	155915181	T	C	SNP	FCRL3	NM_052939	human	genbank	54_36p	-1	reviewed	silent	c.2148	p.E716	0.04	NULL	"superfamily_Immunoglobulin,PatternScan_N6_MTASE,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL3	115352	genome.wustl.edu	36	1	155933778	155933778	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155933778	155933778	A	T	SNP	FCRL3	NM_052939	human	genbank	54_36p	-1	reviewed	missense	c.620	p.M207K	0.91	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FCRL1	115350	genome.wustl.edu	36	1	156038510	156038510	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156038510	156038510	A	G	SNP	FCRL1	NM_052938	human	genbank	54_36p	-1	provisional	silent	c.705	p.S235	0.52	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL1	115350	genome.wustl.edu	36	1	156040398	156040398	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156040398	156040398	G	A	SNP	FCRL1	NM_052938	human	genbank	54_36p	-1	provisional	silent	c.180	p.A60	0	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
KIRREL	55243	genome.wustl.edu	36	1	156327870	156327870	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156327870	156327870	C	T	SNP	KIRREL	NM_018240	human	genbank	54_36p	1	validated	silent	c.879	p.T293	1	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG"	-	no_errors
CD1C	911	genome.wustl.edu	36	1	156529153	156529153	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156529153	156529153	G	T	SNP	CD1C	NM_001765	human	genbank	54_36p	1	reviewed	missense	c.754	p.G252C	0	"superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	"superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	-	no_errors
CD1B	910	genome.wustl.edu	36	1	156565786	156565786	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156565786	156565786	C	A	SNP	CD1B	NM_001764	human	genbank	54_36p	-1	reviewed	missense	c.884	p.W295L	0.99	superfamily_Immunoglobulin	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	-	no_errors
CELA2A	63036	genome.wustl.edu	36	1	15665172	15665172	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15665172	15665172	C	T	SNP	ELA2A	NM_033440	human	genbank	54_36p	1	reviewed	silent	c.585	p.S195	0.07	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
OR10K1	391109	genome.wustl.edu	36	1	156702418	156702418	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156702418	156702418	C	A	SNP	OR10K1	NM_001004473	human	genbank	54_36p	1	provisional	missense	c.443	p.A148D	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
CELA2B	51032	genome.wustl.edu	36	1	15680218	15680218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15680218	15680218	C	G	SNP	ELA2B	NM_015849	human	genbank	54_36p	1	reviewed	missense	c.168	p.H56Q	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
OR10X1	128367	genome.wustl.edu	36	1	156816153	156816153	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156816153	156816153	G	T	SNP	OR10X1	NM_001004477	human	genbank	54_36p	-1	provisional	missense	c.161	p.T54N	0.02	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156850149	156850149	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156850149	156850149	A	C	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	silent	c.6975	p.A2325	0.79	superfamily_EF-hand	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen"	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156873163	156873163	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156873163	156873163	T	C	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.5202	p.I1734M	0.32	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156904273	156904273	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156904273	156904273	T	G	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.2037	p.K679N	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
OR6K3	391114	genome.wustl.edu	36	1	156954197	156954197	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156954197	156954197	C	G	SNP	OR6K3	NM_001005327	human	genbank	54_36p	-1	provisional	missense	c.381	p.E127D	0	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6N1	128372	genome.wustl.edu	36	1	157002280	157002280	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157002280	157002280	C	A	SNP	OR6N1	NM_001005185	human	genbank	54_36p	-1	provisional	missense	c.817	p.A273S	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MNDA	4332	genome.wustl.edu	36	1	157078761	157078761	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157078761	157078761	T	G	SNP	MNDA	NM_002432	human	genbank	54_36p	1	reviewed	missense	c.194	p.L65R	0	HMMPfam_PAAD_DAPIN	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
MNDA	4332	genome.wustl.edu	36	1	157085639	157085639	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157085639	157085639	G	A	SNP	MNDA	NM_002432	human	genbank	54_36p	1	reviewed	missense	c.1212	p.M404I	0	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157175519	157175519	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157175519	157175519	A	G	SNP	PYHIN1	NM_152501	human	genbank	54_36p	1	validated	missense	c.437	p.E146G	0	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157180391	157180391	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157180391	157180391	A	T	SNP	PYHIN1	NM_152501	human	genbank	54_36p	1	validated	missense	c.1190	p.Q397L	0.11	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157181450	157181450	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157181450	157181450	C	G	SNP	PYHIN1	NM_152501	human	genbank	54_36p	1	validated	missense	c.1353	p.F451L	0.01	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
IFI16	3428	genome.wustl.edu	36	1	157290096	157290096	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157290096	157290096	G	A	SNP	IFI16	NM_005531	human	genbank	54_36p	1	reviewed	silent	c.2067	p.G689	0	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
DARC	2532	genome.wustl.edu	36	1	157442218	157442231	+	Frame_Shift_Del	DEL	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	GCACTCGCAGCTCT	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	GCACTCGCAGCTCT	GCACTCGCAGCTCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157442218	157442231	GCACTCGCAGCTCT	-	DEL	DARC	NM_002036	human	genbank	54_36p	1	reviewed	frame_shift_del	c.365_378	p.T123fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	"(deletion:cds_exon[157441875,157442864])"	no_errors
OR10J3	441911	genome.wustl.edu	36	1	157550271	157550271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157550271	157550271	G	A	SNP	OR10J3	NM_001004467	human	genbank	54_36p	-1	provisional	missense	c.803	p.S268F	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10J1	26476	genome.wustl.edu	36	1	157602839	157602839	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157602839	157602839	A	G	SNP	OR10J1	ENST00000328408	human	ensembl	54_36p	1	known	missense	c.265	p.S89G	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_stop_codon
FCRL6	343413	genome.wustl.edu	36	1	158051862	158051862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158051862	158051862	G	C	SNP	FCRL6	NM_001004310	human	genbank	54_36p	1	validated	missense	c.1168	p.V390L	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
IGSF9	57549	genome.wustl.edu	36	1	158166686	158166686	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158166686	158166686	G	A	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.1933	p.R645W	0.8	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
IGSF9	57549	genome.wustl.edu	36	1	158179380	158179380	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158179380	158179380	C	T	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.244	p.V82M	0.99	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
SLAMF9	89886	genome.wustl.edu	36	1	158188870	158188870	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158188870	158188870	G	T	SNP	SLAMF9	NM_033438	human	genbank	54_36p	-1	provisional	missense	c.470	p.S157Y	0.02	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
PIGM	93183	genome.wustl.edu	36	1	158267377	158267377	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158267377	158267377	A	G	SNP	PIGM	NM_145167	human	genbank	54_36p	-1	reviewed	silent	c.777	p.F259	0.99	HMMPfam_Mannosyl_trans	HMMPfam_Mannosyl_trans	-	no_errors
KCNJ10	3766	genome.wustl.edu	36	1	158277963	158277963	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158277963	158277963	G	T	SNP	KCNJ10	NM_002241	human	genbank	54_36p	-1	reviewed	missense	c.984	p.S328R	1	"HMMPfam_IRK,superfamily_E set domains"	"superfamily_Voltage-gated potassium channels,HMMPfam_IRK,superfamily_E set domains"	-	no_errors
LOC388707	388707	genome.wustl.edu	36	1	158503240	158503240	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	158503240	158503240	G	C	SNP	LOC388707	XR_017679	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RSC1A1	6248	genome.wustl.edu	36	1	15859164	15859164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15859164	15859164	C	G	SNP	RSC1A1	NM_006511	human	genbank	54_36p	1	provisional	missense	c.214	p.L72V	0.1	NULL	HMMSmart_UBA	-	no_errors
ITLN1	55600	genome.wustl.edu	36	1	159117595	159117595	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159117595	159117595	C	A	SNP	ITLN1	NM_017625	human	genbank	54_36p	-1	validated	silent	c.537	p.L179	0.07	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ITLN1	55600	genome.wustl.edu	36	1	159118580	159118580	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159118580	159118580	A	T	SNP	ITLN1	NM_017625	human	genbank	54_36p	-1	validated	missense	c.196	p.Y66N	1	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
LOC646347	646347	genome.wustl.edu	36	1	159132183	159132183	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159132183	159132183	C	A	SNP	LOC646347	XR_017680	human	genbank	54_36p	1	model	rna	NULL	NULL	0.94	-	-	-	pseudogene
ITLN2	142683	genome.wustl.edu	36	1	159187017	159187017	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159187017	159187017	T	C	SNP	ITLN2	NM_080878	human	genbank	54_36p	-1	validated	missense	c.550	p.N184D	0	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ARHGAP30	257106	genome.wustl.edu	36	1	159285106	159285106	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159285106	159285106	G	C	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	missense	c.2329	p.Q777E	0.01	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP30	257106	genome.wustl.edu	36	1	159288936	159288936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159288936	159288936	G	A	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	silent	c.858	p.V286	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP"	-	no_errors
PVRL4	81607	genome.wustl.edu	36	1	159309176	159309176	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159309176	159309176	T	C	SNP	PVRL4	NM_030916	human	genbank	54_36p	-1	validated	missense	c.1432	p.I478V	0.99	NULL	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
USP21	27005	genome.wustl.edu	36	1	159397428	159397428	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159397428	159397428	C	T	SNP	USP21	NM_001014443	human	genbank	54_36p	1	reviewed	missense	c.374	p.A125V	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP21	27005	genome.wustl.edu	36	1	159398689	159398689	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159398689	159398689	C	T	SNP	USP21	ENST00000401988	human	ensembl	54_36p	1	known	missense	c.658	p.P220S	1	NULL	"HMMPfam_UCH,superfamily_Cysteine proteinases"	-	no_errors
MPZ	4359	genome.wustl.edu	36	1	159542580	159542580	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159542580	159542580	G	C	SNP	MPZ	NM_000530	human	genbank	54_36p	-1	reviewed	missense	c.617	p.A206G	1	HMMPfam_Myelin-PO_N	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_Myelin-PO_N,PatternScan_MYELIN_P0"	-	no_errors
LOC148430	148430	genome.wustl.edu	36	1	159643193	159643193	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159643193	159643193	C	G	SNP	LOC148430	XR_017209	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ATF6	22926	genome.wustl.edu	36	1	160002790	160002790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160002790	160002790	G	A	SNP	ATF6	NM_007348	human	genbank	54_36p	1	validated	missense	c.16	p.G6R	0	NULL	"HMMSmart_BRLZ,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC"	-	no_errors
ATF6	22926	genome.wustl.edu	36	1	160088228	160088228	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	160088228	160088228	T	C	SNP	ATF6	NM_007348	human	genbank	54_36p	1	validated	missense	c.1412	p.I471T	0.18	NULL	"HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16073415	16073415	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16073415	16073415	T	C	SNP	SPEN	ENST00000375753	human	ensembl	54_36p	1	known	silent	c.219	p.Y73	1	NULL	"superfamily_SSF54928,HMMSmart_RRM"	-	no_stop_codon
SPEN	23013	genome.wustl.edu	36	1	16075631	16075631	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16075631	16075631	G	C	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.752	p.R251T	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC"	-	no_errors
UAP1	6675	genome.wustl.edu	36	1	160835707	160835707	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160835707	160835707	A	G	SNP	UAP1	NM_003115	human	genbank	54_36p	1	validated	missense	c.1448	p.D483G	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP"	-	no_errors
DDR2	4921	genome.wustl.edu	36	1	160989543	160989543	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160989543	160989543	C	T	SNP	DDR2	NM_001014796	human	genbank	54_36p	1	reviewed	silent	c.117	p.G39	1	"HMMSmart_FA58C,superfamily_Gal_bind_like"	"HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16129028	16129028	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16129028	16129028	G	C	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.3706	p.D1236H	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928"	-	no_errors
RGS4	5999	genome.wustl.edu	36	1	161309978	161309978	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	161309978	161309978	T	A	SNP	RGS4	NM_001102445	human	genbank	54_36p	1	reviewed	missense	c.611	p.L204Q	0.97	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
NUF2	83540	genome.wustl.edu	36	1	161564699	161564699	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	161564699	161564699	A	C	SNP	NUF2	NM_031423	human	genbank	54_36p	1	reviewed	missense	c.256	p.S86R	1	HMMPfam_Nuf2	HMMPfam_Nuf2	-	no_errors
NUF2	83540	genome.wustl.edu	36	1	161585425	161585425	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	161585425	161585425	A	T	SNP	NUF2	NM_031423	human	genbank	54_36p	1	reviewed	missense	c.1191	p.E397D	0.67	NULL	HMMPfam_Nuf2	-	no_errors
CLCNKA	1187	genome.wustl.edu	36	1	16223895	16223895	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	16223895	16223895	C	T	SNP	CLCNKA	NM_004070	human	genbank	54_36p	1	reviewed	missense	c.280	p.L94F	1	superfamily_Cl-channel_core	"HMMPfam_CBS,HMMSmart_CBS,HMMPfam_Voltage_CLC,superfamily_Cl-channel_core,superfamily_SSF54631"	-	no_errors
EPHA2	1969	genome.wustl.edu	36	1	16328605	16328605	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16328605	16328605	C	G	SNP	EPHA2	NM_004431	human	genbank	54_36p	-1	reviewed	missense	c.2736	p.W912C	1	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGEF19	128272	genome.wustl.edu	36	1	16397715	16397715	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16397715	16397715	T	G	SNP	ARHGEF19	NM_153213	human	genbank	54_36p	-1	provisional	missense	c.2363	p.K788T	1	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	-	no_errors
UCK2	7371	genome.wustl.edu	36	1	164139129	164139129	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	164139129	164139129	T	C	SNP	UCK2	NM_012474	human	genbank	54_36p	1	reviewed	missense	c.586	p.F196L	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK"	-	no_errors
LOC284685	284685	genome.wustl.edu	36	1	164512962	164512962	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	164512962	164512962	C	T	SNP	LOC284685	XR_017685	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
POGK	57645	genome.wustl.edu	36	1	165086065	165086065	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165086065	165086065	C	T	SNP	POGK	NM_017542	human	genbank	54_36p	1	reviewed	missense	c.1625	p.P542L	0.29	HMMPfam_DDE	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_BrkDBD,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
TADA1	117143	genome.wustl.edu	36	1	165098153	165098153	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165098153	165098153	G	C	SNP	TADA1L	NM_053053	human	genbank	54_36p	-1	validated	missense	c.451	p.L151V	1	NULL	NULL	-	no_errors
ILDR2	387597	genome.wustl.edu	36	1	165172558	165172558	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165172558	165172558	G	A	SNP	ILDR2	NM_199351	human	genbank	54_36p	-1	provisional	silent	c.597	p.L199	1	HMMPfam_LSR	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_LSR"	-	no_errors
DUSP27	92235	genome.wustl.edu	36	1	165362623	165362623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165362623	165362623	T	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	missense	c.1631	p.L544Q	1	NULL	"PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	-	no_errors
DUSP27	92235	genome.wustl.edu	36	1	165363883	165363883	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165363883	165363883	G	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	missense	c.2891	p.R964K	0.61	NULL	"HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799"	-	no_errors
C1orf144	26099	genome.wustl.edu	36	1	16592355	16592356	+	Frame_Shift_Ins	INS	-	-	ATTGT	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	16592355	16592356	-	ATTGT	INS	C1orf144	NM_015609	human	genbank	54_36p	1	provisional	frame_shift_ins	c.90_91	p.D30fs	1.000:1.000	NULL	NULL	-	no_errors
RCSD1	92241	genome.wustl.edu	36	1	165925967	165925967	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165925967	165925967	A	T	SNP	RCSD1	NM_052862	human	genbank	54_36p	1	validated	missense	c.256	p.I86F	1	NULL	HMMPfam_RCSD	-	no_errors
SPATA21	374955	genome.wustl.edu	36	1	16598576	16598576	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16598576	16598576	T	C	SNP	SPATA21	NM_198546	human	genbank	54_36p	-1	provisional	missense	c.1202	p.Q401R	0.99	NULL	"superfamily_SSF47473,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
MPZL1	9019	genome.wustl.edu	36	1	166001554	166001554	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	166001554	166001554	G	A	SNP	MPZL1	NM_003953	human	genbank	54_36p	1	validated	missense	c.202	p.G68R	0.16	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
MPZL1	9019	genome.wustl.edu	36	1	166009187	166009187	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	166009187	166009187	C	G	SNP	MPZL1	NM_003953	human	genbank	54_36p	1	validated	missense	c.563	p.A188G	0.94	NULL	"HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
ADCY10	55811	genome.wustl.edu	36	1	166119382	166119382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	166119382	166119382	C	T	SNP	ADCY10	NM_018417	human	genbank	54_36p	-1	validated	missense	c.937	p.A313T	0.77	superfamily_Adenylyl and guanylyl cyclase catalytic domain	"superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,superfamily_TPR-like"	-	no_errors
SPATA21	374955	genome.wustl.edu	36	1	16621066	16621066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16621066	16621066	C	T	SNP	SPATA21	ENST00000375584	human	ensembl	54_36p	-1	known	missense	c.700	p.V234I	0	NULL	NULL	-	no_errors
F5	2153	genome.wustl.edu	36	1	167750264	167750264	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	167750264	167750264	T	A	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.6586	p.I2196F	1	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C"	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_LSPR,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
F5	2153	genome.wustl.edu	36	1	167751388	167751388	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	167751388	167751388	T	C	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.6446	p.Y2149C	1	"HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like"	"HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_LSPR,HMMPfam_Cu-oxidase_3"	-	no_errors
SELE	6401	genome.wustl.edu	36	1	167963921	167963921	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	167963921	167963921	C	A	SNP	SELE	NM_000450	human	genbank	54_36p	-1	reviewed	missense	c.1181	p.C394F	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	###############################################################################################################################################################################################################################################################	-	no_errors
BAT2L2	23215	genome.wustl.edu	36	1	169802148	169802148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	169802148	169802148	G	C	SNP	BAT2D1	ENST00000392080	human	ensembl	54_36p	1	known	missense	c.6264	p.Q2088H	1	NULL	HMMPfam_BAT2_N	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17168359	17168359	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17168359	17168359	G	A	SNP	CROCC	NM_014675	human	genbank	54_36p	1	validated	silent	c.5238	p.R1746	1	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
SLC9A11	284525	genome.wustl.edu	36	1	171771678	171771678	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	171771678	171771678	C	G	SNP	SLC9A11	NM_178527	human	genbank	54_36p	-1	validated	missense	c.1689	p.M563I	0.05	NULL	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Na_H_Exchanger,HMMPfam_Ion_trans,HMMSmart_cNMP,superfamily_cNMP_binding,HMMPfam_cNMP_binding"	-	no_errors
SLC9A11	284525	genome.wustl.edu	36	1	171812446	171812446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	171812446	171812446	C	T	SNP	SLC9A11	NM_178527	human	genbank	54_36p	-1	validated	silent	c.879	p.P293	0.02	HMMPfam_Na_H_Exchanger	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding"	-	no_errors
ATP13A2	23400	genome.wustl.edu	36	1	17203855	17203855	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17203855	17203855	C	A	SNP	ATP13A2	NM_022089	human	genbank	54_36p	-1	reviewed	silent	c.396	p.A132	0.07	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SERPINC1	462	genome.wustl.edu	36	1	172139768	172139768	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	172139768	172139768	G	A	SNP	SERPINC1	NM_000488	human	genbank	54_36p	-1	validated	missense	c.1277	p.S426L	1	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
RC3H1	149041	genome.wustl.edu	36	1	172220294	172220294	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	172220294	172220294	T	C	SNP	RC3H1	NM_172071	human	genbank	54_36p	-1	validated	silent	c.318	p.L106	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH"	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17269215	17269215	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17269215	17269215	G	T	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.1719	p.F573L	1	"HMMPfam_PAD,superfamily_SSF55909"	"HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909"	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17274006	17274006	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17274006	17274006	G	A	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.1481	p.T494I	1	"HMMPfam_PAD,superfamily_SSF55909"	"superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909"	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17291556	17291556	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17291556	17291556	C	T	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.589	p.G197R	0.98	"HMMPfam_PAD_M,superfamily_PAD_central"	"superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909"	-	no_errors
TNR	7143	genome.wustl.edu	36	1	173560251	173560251	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	173560251	173560251	C	A	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.3821	p.R1274L	1	"HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	-	no_errors
PADI3	51702	genome.wustl.edu	36	1	17472520	17472520	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	17472520	17472520	A	T	SNP	PADI3	NM_016233	human	genbank	54_36p	1	reviewed	missense	c.1146	p.K382N	0.31	"HMMPfam_PAD,superfamily_SSF55909"	"HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909"	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174931581	174931581	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	174931581	174931581	T	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.2709	p.C903W	1	HMMPfam_Peptidase_M43	###############################################################################################################################################################################################################################################################	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174935170	174935170	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	174935170	174935170	G	T	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.3058	p.V1020L	0.95	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174935189	174935189	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	174935189	174935189	A	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.3077	p.D1026G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175104728	175104728	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175104728	175104728	C	T	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	silent	c.3522	p.Q1174	1	NULL	"HMMSmart_EGF,HMMSmart_MACPF,superfamily_FN_III-like,HMMSmart_FN3"	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175181690	175181705	+	Frame_Shift_Del	DEL	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	-	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175181690	175181705	TGTTCCTTTCAGCACC	-	DEL	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	frame_shift_del	c.2244_2229	p.Q743fs	0.969:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like"	"(deletion:cds_exon[175181685,175181879])"	no_errors
ASTN1	460	genome.wustl.edu	36	1	175259324	175259324	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175259324	175259324	C	A	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	missense	c.1277	p.R426L	1	NULL	"HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like"	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175268522	175268522	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175268522	175268522	G	C	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	silent	c.558	p.V186	0.63	NULL	"HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like"	-	no_errors
PADI4	23569	genome.wustl.edu	36	1	17547048	17547048	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17547048	17547048	A	T	SNP	PADI4	NM_012387	human	genbank	54_36p	1	reviewed	missense	c.1073	p.Q358L	1	"HMMPfam_PAD,superfamily_Pentein"	"HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein"	-	no_errors
FAM5B	57795	genome.wustl.edu	36	1	175517201	175517201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175517201	175517201	G	A	SNP	FAM5B	NM_021165	human	genbank	54_36p	1	provisional	missense	c.2266	p.V756M	1	NULL	HMMSmart_SM00457	-	no_errors
PADI4	23569	genome.wustl.edu	36	1	17558442	17558442	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	17558442	17558442	C	T	SNP	PADI4	NM_012387	human	genbank	54_36p	1	reviewed	silent	c.1710	p.L570	1	"HMMPfam_PAD,superfamily_Pentein"	"superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein"	-	no_errors
RASAL2	9462	genome.wustl.edu	36	1	176687333	176687333	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	176687333	176687333	G	C	SNP	RASAL2	NM_170692	human	genbank	54_36p	1	reviewed	missense	c.1578	p.E526D	1	"HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP"	"HMMSmart_PH,superfamily_SSF50729,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	-	no_errors
FAM20B	9917	genome.wustl.edu	36	1	177279865	177279865	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	177279865	177279865	T	G	SNP	FAM20B	NM_014864	human	genbank	54_36p	1	validated	missense	c.260	p.V87G	1	NULL	HMMPfam_DUF1193	-	no_errors
FAM20B	9917	genome.wustl.edu	36	1	177300122	177300122	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	177300122	177300122	G	T	SNP	FAM20B	NM_014864	human	genbank	54_36p	1	validated	missense	c.806	p.G269V	1	HMMPfam_DUF1193	HMMPfam_DUF1193	-	no_errors
ARHGEF10L	55160	genome.wustl.edu	36	1	17823526	17823526	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17823526	17823526	G	A	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	1	validated	missense	c.1258	p.A420T	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_WD40 repeat-like"	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178290216	178290216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178290216	178290216	C	T	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.5215	p.R1739W	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178290231	178290231	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178290231	178290231	G	T	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.5230	p.G1744C	1	NULL	"HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain"	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178328483	178328483	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178328483	178328483	C	G	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.6617	p.P2206R	0.97	NULL	"HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain"	-	no_errors
QSOX1	5768	genome.wustl.edu	36	1	178432226	178432226	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178432226	178432226	G	A	SNP	QSOX1	NM_002826	human	genbank	54_36p	1	reviewed	missense	c.1675	p.A559T	0.01	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,superfamily_FAD-dependent thiol oxidase,HMMPfam_Evr1_Alr"	-	no_errors
KIAA1614	57710	genome.wustl.edu	36	1	179171458	179171458	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	179171458	179171458	C	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.1790	p.T597I	0.98	NULL	NULL	-	no_errors
STX6	10228	genome.wustl.edu	36	1	179225768	179225768	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	179225768	179225768	A	G	SNP	STX6	NM_005819	human	genbank	54_36p	-1	validated	missense	c.464	p.I155T	1	NULL	"superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	179974914	179974914	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	179974914	179974914	C	T	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	silent	c.3621	p.D1207	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	180034140	180034140	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180034140	180034140	G	T	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	silent	c.6360	p.P2120	0.32	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025359	18025359	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18025359	18025359	C	A	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	missense	c.859	p.L287M	0	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN"	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025484	18025484	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18025484	18025484	G	C	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	missense	c.984	p.W328C	0	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025595	18025595	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18025595	18025595	G	A	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	silent	c.1095	p.R365	0	"HMMPfam_Actin,HMMSmart_ACTIN"	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	-	no_errors
TEDDM1	127670	genome.wustl.edu	36	1	180635534	180635534	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180635534	180635534	T	C	SNP	TEDDM1	NM_172000	human	genbank	54_36p	-1	validated	missense	c.710	p.K237R	0	NULL	HMMPfam_DUF716	-	no_errors
TEDDM1	127670	genome.wustl.edu	36	1	180635977	180635977	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180635977	180635977	C	G	SNP	TEDDM1	NM_172000	human	genbank	54_36p	-1	validated	missense	c.267	p.K89N	0.06	NULL	HMMPfam_DUF716	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180811317	180811317	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180811317	180811317	C	T	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.2059	p.D687N	0.23	"HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180812026	180812026	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180812026	180812026	T	C	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.2027	p.E676G	0	"HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00220,HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like)"	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180821901	180821901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180821901	180821901	T	A	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.664	p.T222S	0	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00220,HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like)"	-	no_errors
RGS8	85397	genome.wustl.edu	36	1	180883954	180883954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180883954	180883954	G	C	SNP	RGS8	NM_033345	human	genbank	54_36p	-1	reviewed	missense	c.355	p.L119V	1	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
DHX9	1660	genome.wustl.edu	36	1	181112227	181112227	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181112227	181112227	A	G	SNP	DHX9	NM_001357	human	genbank	54_36p	1	reviewed	silent	c.2052	p.L684	0.98	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181346371	181346371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181346371	181346371	C	G	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.980	p.P327R	1	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_LAM_1"	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMSmart_LamB,HMMPfam_Laminin_B,PatternScan_EGF_2"	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181360492	181360492	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181360492	181360492	T	A	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.2505	p.D835E	1	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196"	"HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF57196"	-	no_errors
LAMC2	3918	genome.wustl.edu	36	1	181479120	181479120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181479120	181479120	C	G	SNP	LAMC2	NM_005562	human	genbank	54_36p	1	reviewed	missense	c.3544	p.P1182A	0.98	NULL	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_1,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181796000	181796001	+	Missense_Mutation	DNP	TC	TC	GT	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	TC	TC	TC	GT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181796000	181796001	TC	GT	DNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.1322_1321	p.E441T	0.006:0.005	superfamily_SH3	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF54277,HMMPfam_PB1,HMMSmart_PB1"	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181810245	181810245	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181810245	181810245	C	G	SNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.501	p.W167C	1	superfamily_SSF48452	"HMMPfam_PB1,HMMSmart_PB1,HMMPfam_TPR_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_TPR,superfamily_SSF48452,superfamily_SSF54277"	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181810298	181810298	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181810298	181810298	T	C	SNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.448	p.M150V	0.81	"HMMSmart_TPR,superfamily_SSF48452"	"HMMPfam_PB1,HMMSmart_PB1,HMMPfam_TPR_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_TPR,superfamily_SSF48452,superfamily_SSF54277"	-	no_errors
RGL1	23179	genome.wustl.edu	36	1	182083355	182083355	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	182083355	182083355	A	G	SNP	RGL1	NM_015149	human	genbank	54_36p	1	validated	silent	c.276	p.T92	0.98	superfamily_Ras GEF	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314"	-	no_errors
RGL1	23179	genome.wustl.edu	36	1	182147925	182147925	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	182147925	182147925	G	C	SNP	RGL1	NM_015149	human	genbank	54_36p	1	validated	missense	c.1754	p.S585T	1	NULL	"HMMPfam_RA,HMMSmart_SM00314,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_Ubiquitin-like"	-	no_errors
FAM129A	116496	genome.wustl.edu	36	1	183031338	183031338	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183031338	183031338	G	C	SNP	FAM129A	NM_052966	human	genbank	54_36p	-1	validated	missense	c.2183	p.P728R	0	NULL	NULL	-	no_errors
FAM129A	116496	genome.wustl.edu	36	1	183031339	183031339	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183031339	183031339	G	T	SNP	FAM129A	NM_052966	human	genbank	54_36p	-1	validated	missense	c.2182	p.P728T	0	NULL	NULL	-	no_errors
C1orf26	54823	genome.wustl.edu	36	1	183410550	183410550	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183410550	183410550	C	T	SNP	C1orf26	NM_001105518	human	genbank	54_36p	1	validated	silent	c.648	p.N216	0	NULL	"superfamily_SSF88723,HMMSmart_PINc"	-	no_errors
IVNS1ABP	10625	genome.wustl.edu	36	1	183533919	183533919	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183533919	183533919	C	G	SNP	IVNS1ABP	NM_006469	human	genbank	54_36p	-1	validated	silent	c.1800	p.G600	0.99	"superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
IVNS1ABP	10625	genome.wustl.edu	36	1	183545153	183545153	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183545153	183545153	A	T	SNP	IVNS1ABP	NM_006469	human	genbank	54_36p	-1	validated	nonsense	c.96	p.C32*	1	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184159201	184159201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184159201	184159201	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.1078	p.D360N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184258889	184258889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184258889	184258889	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.5730	p.H1910	1	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184358857	184358857	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184358857	184358857	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.12381	p.V4127	0.96	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184402616	184402616	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184402616	184402616	G	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.15493	p.D5165Y	1	"HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184418038	184418038	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184418038	184418038	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.16410	p.C5470	1	"HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
TPR	7175	genome.wustl.edu	36	1	184595581	184595581	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184595581	184595581	T	C	SNP	TPR	NM_003292	human	genbank	54_36p	-1	reviewed	silent	c.1362	p.L454	0.99	NULL	"superfamily_Prefoldin,HMMPfam_TPR_MLP1_2"	-	no_errors
PTGS2	5743	genome.wustl.edu	36	1	184912345	184912345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184912345	184912345	C	T	SNP	PTGS2	NM_000963	human	genbank	54_36p	-1	reviewed	missense	c.847	p.G283S	0.99	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	"superfamily_EGF/Laminin,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	-	no_errors
PLA2G4A	5321	genome.wustl.edu	36	1	185186473	185186473	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	185186473	185186473	C	G	SNP	PLA2G4A	NM_024420	human	genbank	54_36p	1	reviewed	missense	c.1326	p.H442Q	0.96	"HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B,PatternScan_PPASE,PatternScan_SUBTILASE_ASP"	-	no_errors
IGSF21	84966	genome.wustl.edu	36	1	18577378	18577378	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18577378	18577378	G	A	SNP	IGSF21	NM_032880	human	genbank	54_36p	1	provisional	missense	c.1375	p.A459T	1	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	-	no_errors
KLHDC7A	127707	genome.wustl.edu	36	1	18680136	18680136	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18680136	18680136	C	G	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	1	validated	missense	c.74	p.A25G	0.82	NULL	"superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KLHDC7A	127707	genome.wustl.edu	36	1	18680771	18680771	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18680771	18680771	G	A	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	1	validated	missense	c.709	p.G237R	0.01	NULL	"HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central"	-	no_errors
PAX7	5081	genome.wustl.edu	36	1	18833476	18833476	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18833476	18833476	G	C	SNP	PAX7	NM_002584	human	genbank	54_36p	1	reviewed	missense	c.178	p.V60L	1	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like"	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188470230	188470230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	188470230	188470230	C	T	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.619	p.V207I	1	HMMSmart_SM00457	"HMMPfam_MACPF,HMMSmart_SM00457"	-	no_errors
TAS1R2	80834	genome.wustl.edu	36	1	19039080	19039080	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19039080	19039080	C	T	SNP	TAS1R2	NM_152232	human	genbank	54_36p	-1	validated	missense	c.2120	p.R707H	0	HMMPfam_7tm_3	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3"	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190395038	190395038	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190395038	190395038	G	A	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	missense	c.185	p.R62H	0	NULL	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190395051	190395051	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190395051	190395051	T	G	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	silent	c.198	p.S66	0.29	NULL	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190417080	190417080	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190417080	190417080	G	C	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	missense	c.319	p.E107Q	1	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
RGS21	431704	genome.wustl.edu	36	1	190583138	190583138	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190583138	190583138	C	A	SNP	RGS21	NM_001039152	human	genbank	54_36p	1	provisional	missense	c.84	p.N28K	0.96	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19314710	19314710	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	19314710	19314710	C	A	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.10832	p.R3611L	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19316463	19316463	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19316463	19316463	C	T	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	silent	c.10662	p.T3554	0.97	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19316494	19316494	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19316494	19316494	T	A	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.10631	p.Y3544F	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19352973	19352973	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19352973	19352973	T	G	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.6506	p.E2169A	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19366167	19366167	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19366167	19366167	G	C	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.4045	p.R1349G	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
KIAA0090	23065	genome.wustl.edu	36	1	19438993	19438993	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19438993	19438993	G	A	SNP	KIAA0090	NM_015047	human	genbank	54_36p	-1	predicted	missense	c.860	p.S287F	0.88	superfamily_Quinoprotein alcohol dehydrogenase-like	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_DUF1620"	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194562493	194562493	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	194562493	194562493	G	A	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	silent	c.2253	p.P751	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a"	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194634315	194634315	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	194634315	194634315	C	T	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	splice_site	c.1294+1	e13+1	1	-	-	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194665328	194665328	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	194665328	194665328	A	T	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	splice_site	c.819+2	e9+2	1	-	-	-	no_errors
CFHR4	10877	genome.wustl.edu	36	1	195138355	195138355	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195138355	195138355	G	A	SNP	CFHR4	NM_006684	human	genbank	54_36p	1	validated	silent	c.243	p.T81	0	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
ASPM	259266	genome.wustl.edu	36	1	195337279	195337279	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195337279	195337279	C	T	SNP	ASPM	NM_018136	human	genbank	54_36p	-1	validated	silent	c.7725	p.K2575	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
ASPM	259266	genome.wustl.edu	36	1	195338672	195338672	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195338672	195338672	C	T	SNP	ASPM	NM_018136	human	genbank	54_36p	-1	validated	missense	c.6332	p.R2111K	0.47	"HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195564406	195564406	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195564406	195564406	G	C	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.302	p.G101A	0.85	"HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195592610	195592610	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	195592610	195592610	G	A	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.1015	p.D339N	0.96	"HMMSmart_SM00179,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195657676	195657676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195657676	195657676	C	T	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.2095	p.H699Y	1	"HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
LHX9	56956	genome.wustl.edu	36	1	196153694	196153694	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	196153694	196153694	A	G	SNP	LHX9	NM_020204	human	genbank	54_36p	1	reviewed	missense	c.118	p.R40G	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PTPRC	5788	genome.wustl.edu	36	1	196938184	196938184	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	196938184	196938184	C	A	SNP	PTPRC	NM_002838	human	genbank	54_36p	1	reviewed	missense	c.479	p.P160Q	0	NULL	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
ENSG00000209589	0	genome.wustl.edu	36	1	19731278	19731278	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	19731278	19731278	T	A	SNP	ENSG00000209589	ENST00000386854	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
NR5A2	2494	genome.wustl.edu	36	1	198356604	198356604	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	198356604	198356604	A	C	SNP	NR5A2	NM_205860	human	genbank	54_36p	1	validated	missense	c.1276	p.N426H	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
NBL1	4681	genome.wustl.edu	36	1	19854446	19854446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	19854446	19854446	C	T	SNP	NBL1	NM_182744	human	genbank	54_36p	1	reviewed	silent	c.318	p.T106	1	"HMMPfam_DAN,HMMSmart_CT"	"HMMPfam_DAN,HMMSmart_CT"	-	no_errors
KIF21B	23046	genome.wustl.edu	36	1	199225768	199225768	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	199225768	199225768	G	C	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	silent	c.3057	p.S1019	0.43	"superfamily_WD40_like,superfamily_Prefoldin"	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CACNA1S	779	genome.wustl.edu	36	1	199327481	199327481	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	199327481	199327481	G	A	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	silent	c.604	p.L202	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
IPO9	55705	genome.wustl.edu	36	1	200087914	200087914	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200087914	200087914	G	A	SNP	IPO9	NM_018085	human	genbank	54_36p	1	validated	missense	c.574	p.E192K	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N"	-	no_errors
LMOD1	25802	genome.wustl.edu	36	1	200135833	200135833	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200135833	200135833	C	T	SNP	LMOD1	ENST00000367288	human	ensembl	54_36p	-1	known	missense	c.931	p.E311K	1	HMMPfam_Tropomodulin	"HMMPfam_Tropomodulin,superfamily_SSF52047,HMMPfam_WH2"	-	no_errors
ARL8A	127829	genome.wustl.edu	36	1	200371488	200371488	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200371488	200371488	T	C	SNP	ARL8A	NM_138795	human	genbank	54_36p	-1	validated	silent	c.342	p.L114	0.86	"HMMSmart_SM00177,HMMPfam_Arf,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	"HMMSmart_SM00177,HMMPfam_Arf,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	-	no_errors
PPP1R12B	4660	genome.wustl.edu	36	1	200673582	200673582	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	200673582	200673582	G	T	SNP	PPP1R12B	NM_032105	human	genbank	54_36p	1	reviewed	missense	c.1265	p.G422V	0.99	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
SYT2	127833	genome.wustl.edu	36	1	200835041	200835041	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200835041	200835041	G	T	SNP	SYT2	NM_177402	human	genbank	54_36p	-1	validated	silent	c.981	p.T327	0.91	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201281644	201281644	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201281644	201281644	G	C	SNP	PPFIA4	ENST00000367238	human	ensembl	54_36p	1	known	missense	c.911	p.R304P	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201299692	201299692	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201299692	201299692	G	A	SNP	PPFIA4	NM_015053	human	genbank	54_36p	1	validated	missense	c.1470	p.M490I	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201304215	201304215	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201304215	201304215	T	A	SNP	PPFIA4	NM_015053	human	genbank	54_36p	1	validated	missense	c.1642	p.W548R	1	"HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	"HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	-	no_errors
FMOD	2331	genome.wustl.edu	36	1	201583696	201583696	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201583696	201583696	T	C	SNP	FMOD	NM_002023	human	genbank	54_36p	-1	reviewed	missense	c.326	p.Y109C	1	"superfamily_SSF52058,HMMSmart_LRRNT"	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
ATP2B4	493	genome.wustl.edu	36	1	201939470	201939470	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201939470	201939470	G	C	SNP	ATP2B4	NM_001684	human	genbank	54_36p	1	reviewed	missense	c.1005	p.E335D	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase"	###############################################################################################################################################################################################################################################################	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202382475	202382475	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	202382475	202382475	C	T	SNP	ETNK2	NM_018208	human	genbank	54_36p	-1	reviewed	missense	c.559	p.A187T	1	"superfamily_Kinase_like,HMMPfam_Choline_kinase"	"superfamily_Kinase_like,HMMPfam_Choline_kinase"	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202383259	202383259	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	202383259	202383259	G	T	SNP	ETNK2	ENST00000367198	human	ensembl	54_36p	-1	known	missense	c.68	p.T23K	0	HMMPfam_Choline_kinase	"HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)"	-	no_start_codon
PPP1R15B	84919	genome.wustl.edu	36	1	202646965	202646965	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	202646965	202646965	C	A	SNP	PPP1R15B	NM_032833	human	genbank	54_36p	-1	validated	silent	c.198	p.L66	0.75	HMMPfam_CReP_N	"HMMPfam_CReP_N,HMMPfam_PP1c_bdg"	-	no_errors
NFASC	23114	genome.wustl.edu	36	1	203236956	203236956	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203236956	203236956	C	T	SNP	NFASC	ENST00000367172	human	ensembl	54_36p	1	known	missense	c.3376	p.L1126F	0.51	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
NUAK2	81788	genome.wustl.edu	36	1	203539936	203539936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203539936	203539936	G	A	SNP	NUAK2	NM_030952	human	genbank	54_36p	-1	provisional	silent	c.1152	p.A384	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
UBXN10	127733	genome.wustl.edu	36	1	20389680	20389680	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	20389680	20389680	G	A	SNP	UBXN10	NM_152376	human	genbank	54_36p	1	provisional	silent	c.39	p.E13	0	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00166,HMMPfam_UBX"	-	no_errors
SLC45A3	85414	genome.wustl.edu	36	1	203898616	203898616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203898616	203898616	G	A	SNP	SLC45A3	NM_033102	human	genbank	54_36p	-1	validated	missense	c.926	p.P309L	1	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC45A3	85414	genome.wustl.edu	36	1	203898728	203898728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203898728	203898728	G	C	SNP	SLC45A3	NM_033102	human	genbank	54_36p	-1	validated	missense	c.814	p.R272G	1	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
RAB7L1	8934	genome.wustl.edu	36	1	204007251	204007251	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204007251	204007251	G	A	SNP	RAB7L1	NM_003929	human	genbank	54_36p	-1	validated	missense	c.350	p.P117L	0.88	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
AVPR1B	553	genome.wustl.edu	36	1	204391626	204391626	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204391626	204391626	C	A	SNP	AVPR1B	NM_000707	human	genbank	54_36p	1	reviewed	missense	c.563	p.A188E	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
AVPR1B	553	genome.wustl.edu	36	1	204391958	204391958	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204391958	204391958	A	-	DEL	AVPR1B	NM_000707	human	genbank	54_36p	1	reviewed	frame_shift_del	c.895	p.S299fs	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	"(deletion:cds_exon[204391064,204392003])"	no_errors
SRGAP2	23380	genome.wustl.edu	36	1	204633631	204633631	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204633631	204633631	A	G	SNP	SRGAP2	ENST00000295713	human	ensembl	54_36p	1	known	missense	c.551	p.H184R	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_start_codon
SRGAP2	23380	genome.wustl.edu	36	1	204698858	204698858	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204698858	204698858	C	A	SNP	SRGAP2	ENST00000367123	human	ensembl	54_36p	1	known	missense	c.728	p.A243E	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_stop_codon
IKBKE	9641	genome.wustl.edu	36	1	204719028	204719028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204719028	204719028	C	T	SNP	IKBKE	NM_014002	human	genbank	54_36p	1	validated	missense	c.1112	p.A371V	1	NULL	"PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
IKBKE	9641	genome.wustl.edu	36	1	204719852	204719852	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204719852	204719852	C	T	SNP	IKBKE	NM_014002	human	genbank	54_36p	1	validated	silent	c.1200	p.P400	1	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
FCAMR	83953	genome.wustl.edu	36	1	205207598	205207598	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205207598	205207598	C	G	SNP	FCAMR	ENST00000400962	human	ensembl	54_36p	-1	known	missense	c.61	p.E21Q	0	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
C4BPB	725	genome.wustl.edu	36	1	205336565	205336565	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205336565	205336565	G	T	SNP	C4BPB	NM_000716	human	genbank	54_36p	1	reviewed	missense	c.485	p.S162I	0.06	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205807862	205807862	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205807862	205807862	C	A	SNP	CR1	NM_000651	human	genbank	54_36p	1	reviewed	silent	c.4023	p.P1341	0.05	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205851743	205851743	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205851743	205851743	A	T	SNP	CR1	NM_000651	human	genbank	54_36p	1	reviewed	missense	c.6394	p.S2132C	0	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	-	no_errors
CD34	947	genome.wustl.edu	36	1	206128671	206128671	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	206128671	206128671	C	G	SNP	CD34	NM_001025109	human	genbank	54_36p	-1	validated	missense	c.951	p.W317C	1	HMMPfam_CD34_antigen	HMMPfam_CD34_antigen	-	no_errors
PLXNA2	5362	genome.wustl.edu	36	1	206457025	206457025	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	206457025	206457025	T	A	SNP	PLXNA2	NM_025179	human	genbank	54_36p	-1	reviewed	missense	c.866	p.K289M	1	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
LAMB3	3914	genome.wustl.edu	36	1	207857413	207857413	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	207857413	207857413	C	A	SNP	LAMB3	NM_000228	human	genbank	54_36p	-1	reviewed	nonsense	c.3193	p.E1065*	0	NULL	"HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
TRAF3IP3	80342	genome.wustl.edu	36	1	208015458	208015458	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208015458	208015458	G	T	SNP	TRAF3IP3	NM_025228	human	genbank	54_36p	1	provisional	splice_site	c.855+1	e8+1	1	-	-	-	no_errors
C1orf107	27042	genome.wustl.edu	36	1	208070891	208070893	+	In_Frame_Del	DEL	GAG	GAG	-	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208070891	208070893	GAG	-	DEL	C1orf107	NM_014388	human	genbank	54_36p	1	validated	in_frame_del	c.268_270	p.E93in_frame_del	0.861:0.831:0.735	NULL	HMMPfam_DUF1253	"(deletion:cds_exon[208070771,208071011])"	no_errors
C1orf107	27042	genome.wustl.edu	36	1	208082350	208082351	+	Missense_Mutation	DNP	GG	GG	CT	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	GG	GG	GG	CT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208082350	208082351	GG	CT	DNP	C1orf107	NM_014388	human	genbank	54_36p	1	validated	missense	c.1603_1604	p.G535L	1.000:1.000	HMMPfam_DUF1253	HMMPfam_DUF1253	-	no_errors
KIF17	57576	genome.wustl.edu	36	1	20865316	20865316	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	20865316	20865316	G	T	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	missense	c.2889	p.S963R	1	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HHAT	55733	genome.wustl.edu	36	1	208658139	208658139	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208658139	208658139	G	A	SNP	HHAT	NM_018194	human	genbank	54_36p	1	validated	missense	c.703	p.D235N	0	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
HHAT	55733	genome.wustl.edu	36	1	208753155	208753155	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208753155	208753155	G	A	SNP	HHAT	NM_018194	human	genbank	54_36p	1	validated	missense	c.1043	p.R348K	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
KIF17	57576	genome.wustl.edu	36	1	20889296	20889296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	20889296	20889296	C	T	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	silent	c.1353	p.T451	0.94	NULL	"HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	208923393	208923393	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208923393	208923393	G	A	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	silent	c.2823	p.N941	0.16	NULL	"superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	208924017	208924017	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208924017	208924017	C	T	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	silent	c.2199	p.P733	0.67	NULL	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209044047	209044047	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209044047	209044047	A	G	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1547	p.L516P	1	superfamily_cAMP-binding domain-like	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209258748	209258748	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209258748	209258748	C	A	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1032	p.Q344H	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
RD3	343035	genome.wustl.edu	36	1	209721351	209721351	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209721351	209721351	G	A	SNP	RD3	NM_183059	human	genbank	54_36p	-1	validated	silent	c.30	p.N10	0.98	NULL	NULL	-	no_errors
SLC30A1	7779	genome.wustl.edu	36	1	209815995	209815995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209815995	209815995	A	C	SNP	SLC30A1	NM_021194	human	genbank	54_36p	-1	validated	missense	c.882	p.F294L	0.97	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212862097	212862097	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212862097	212862097	A	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	silent	c.918	p.K306	1	NULL	"HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F"	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212882145	212882145	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212882145	212882145	A	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	missense	c.3841	p.T1281A	0.01	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212882202	212882202	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212882202	212882202	C	T	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	silent	c.3898	p.L1300	0.01	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212887123	212887123	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212887123	212887123	T	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	missense	c.7587	p.N2529K	0	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
KCTD3	51133	genome.wustl.edu	36	1	213813754	213813754	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	213813754	213813754	T	G	SNP	KCTD3	NM_016121	human	genbank	54_36p	1	validated	missense	c.86	p.F29C	1	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1"	-	no_errors
ESRRG	2104	genome.wustl.edu	36	1	214917271	214917271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214917271	214917271	G	A	SNP	ESRRG	NM_001438	human	genbank	54_36p	-1	validated	missense	c.242	p.S81L	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
NBPF3	84224	genome.wustl.edu	36	1	21670841	21670841	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21670841	21670841	C	G	SNP	NBPF3	NM_032264	human	genbank	54_36p	1	validated	missense	c.639	p.H213Q	0	NULL	HMMPfam_DUF1220	-	no_errors
ALPL	249	genome.wustl.edu	36	1	21760242	21760242	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21760242	21760242	G	A	SNP	ALPL	NM_000478	human	genbank	54_36p	1	reviewed	missense	c.247	p.E83K	1	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE"	-	no_errors
ZC3H11B	643136	genome.wustl.edu	36	1	217850050	217850050	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	217850050	217850050	C	A	SNP	ZC3H11B	XR_041768	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.11	-	-	-	pseudogene
EPRS	2058	genome.wustl.edu	36	1	218228735	218228735	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	218228735	218228735	T	C	SNP	EPRS	NM_004446	human	genbank	54_36p	-1	reviewed	silent	c.2595	p.K865	1	"superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS"	###############################################################################################################################################################################################################################################################	-	no_errors
IARS2	55699	genome.wustl.edu	36	1	218378008	218378008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	218378008	218378008	G	C	SNP	IARS2	NM_018060	human	genbank	54_36p	1	validated	missense	c.2175	p.K725N	1	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	###############################################################################################################################################################################################################################################################	-	no_errors
RAP1GAP	5909	genome.wustl.edu	36	1	21850624	21850624	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21850624	21850624	C	T	SNP	RAP1GAP	ENST00000374757	human	ensembl	54_36p	-1	known	silent	c.126	p.V42	0	NULL	"HMMPfam_GoLoco,HMMSmart_GoLoco,superfamily_SSF111347"	-	no_errors
USP48	84196	genome.wustl.edu	36	1	21894209	21894209	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21894209	21894209	T	A	SNP	USP48	NM_032236	human	genbank	54_36p	-1	reviewed	missense	c.2820	p.K940N	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Ubiquitin-like"	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22074827	22074827	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22074827	22074827	G	T	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.3184	p.Q1062K	0.99	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281,HMMPfam_Laminin_B"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22078135	22078135	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22078135	22078135	T	C	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.2410	p.M804V	0.93	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
TLR5	7100	genome.wustl.edu	36	1	221352673	221352673	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	221352673	221352673	G	T	SNP	TLR5	NM_003268	human	genbank	54_36p	-1	validated	nonsense	c.324	p.Y108*	0.01	"superfamily_SSF52058,HMMSmart_LRR_TYP"	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
TP53BP2	7159	genome.wustl.edu	36	1	222046844	222046844	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	222046844	222046844	C	G	SNP	TP53BP2	NM_001031685	human	genbank	54_36p	-1	reviewed	missense	c.2866	p.D956H	0.99	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
WNT4	54361	genome.wustl.edu	36	1	22320651	22320651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22320651	22320651	G	A	SNP	WNT4	NM_030761	human	genbank	54_36p	-1	reviewed	missense	c.319	p.R107W	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
WNT4	54361	genome.wustl.edu	36	1	22326371	22326371	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22326371	22326371	G	A	SNP	WNT4	ENST00000374655	human	ensembl	54_36p	-1	known	silent	c.504	p.T168	0	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097"	-	no_errors
ENAH	55740	genome.wustl.edu	36	1	223768935	223768935	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	223768935	223768935	T	G	SNP	ENAH	NM_001008493	human	genbank	54_36p	-1	validated	silent	c.1204	p.R402	0.99	NULL	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_VASP_tetra"	-	no_errors
TMEM63A	9725	genome.wustl.edu	36	1	224101408	224101408	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	224101408	224101408	G	A	SNP	TMEM63A	NM_014698	human	genbank	54_36p	-1	provisional	nonsense	c.2380	p.Q794*	0.02	NULL	"superfamily_SSF54928,HMMPfam_DUF221"	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224896358	224896358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	224896358	224896358	C	T	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.2338	p.A780T	1	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224990219	224990219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	224990219	224990219	G	A	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.1564	p.R522C	0	NULL	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	-	no_errors
SNAP47	116841	genome.wustl.edu	36	1	226013795	226013795	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226013795	226013795	C	G	SNP	SNAP47	NM_053052	human	genbank	54_36p	1	validated	nonsense	c.1109	p.S370*	0.01	NULL	NULL	-	no_errors
WNT9A	7483	genome.wustl.edu	36	1	226178521	226178521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	226178521	226178521	G	A	SNP	WNT9A	NM_003395	human	genbank	54_36p	-1	validated	missense	c.556	p.R186W	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
WNT3A	89780	genome.wustl.edu	36	1	226277096	226277096	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226277096	226277096	C	T	SNP	WNT3A	NM_033131	human	genbank	54_36p	1	reviewed	silent	c.177	p.Y59	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226499829	226499829	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226499829	226499829	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.3574	p.Q1192E	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	###############################################################################################################################################################################################################################################################	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226511219	226511219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226511219	226511219	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.4554	p.S1518R	0.92	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM17	51127	genome.wustl.edu	36	1	226662587	226662587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226662587	226662587	G	T	SNP	TRIM17	NM_001024940	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.L458M	0.97	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
RAB4A	5867	genome.wustl.edu	36	1	227505312	227505312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	227505312	227505312	G	A	SNP	RAB4A	NM_004578	human	genbank	54_36p	1	provisional	missense	c.622	p.A208T	0.94	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00176"	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
GALNT2	2590	genome.wustl.edu	36	1	228452888	228452888	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	228452888	228452888	A	T	SNP	GALNT2	NM_004481	human	genbank	54_36p	1	reviewed	missense	c.968	p.K323M	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
CAPN9	10753	genome.wustl.edu	36	1	228995244	228995244	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	228995244	228995244	A	T	SNP	CAPN9	NM_006615	human	genbank	54_36p	1	reviewed	missense	c.1817	p.D606V	1	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM67	440730	genome.wustl.edu	36	1	229409060	229409060	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229409060	229409060	G	A	SNP	TRIM67	NM_001004342	human	genbank	54_36p	1	validated	missense	c.1720	p.G574S	1	"HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM67	440730	genome.wustl.edu	36	1	229411375	229411375	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229411375	229411375	A	G	SNP	TRIM67	NM_001004342	human	genbank	54_36p	1	validated	missense	c.1879	p.N627D	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229465158	229465159	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229465158	229465159	CT	-	DEL	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	frame_shift_del	c.505_506	p.L169fs	1.000:1.000	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	"(deletion:cds_exon[229465092,229465221])"	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229474686	229474686	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229474686	229474686	G	T	SNP	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	missense	c.1528	p.V510F	1	NULL	"HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593"	-	no_errors
EPHB2	2048	genome.wustl.edu	36	1	23064266	23064266	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23064266	23064266	C	G	SNP	EPHB2	NM_004442	human	genbank	54_36p	1	reviewed	missense	c.1277	p.S426C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA1383	54627	genome.wustl.edu	36	1	231008926	231008926	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	231008926	231008926	C	G	SNP	KIAA1383	NM_019090	human	genbank	54_36p	1	validated	missense	c.1534	p.P512A	0.01	NULL	NULL	-	no_errors
EPHB2	2048	genome.wustl.edu	36	1	23112740	23112740	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23112740	23112740	C	A	SNP	EPHB2	ENST00000374630	human	ensembl	54_36p	1	known	silent	c.2958	p.G986	0.66	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf57	84284	genome.wustl.edu	36	1	231180580	231180580	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	231180580	231180580	G	A	SNP	C1orf57	NM_032324	human	genbank	54_36p	1	predicted	missense	c.553	p.V185M	0.66	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF265"	"HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF265"	-	no_errors
LOC728973	728973	genome.wustl.edu	36	1	231491760	231491760	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	231491760	231491760	G	T	SNP	LOC728973	XR_015809	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KDM1A	23028	genome.wustl.edu	36	1	23229651	23229651	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23229651	23229651	C	A	SNP	AOF2	NM_015013	human	genbank	54_36p	1	reviewed	missense	c.454	p.P152T	1	NULL	"HMMPfam_SWIRM,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
SLC35F3	148641	genome.wustl.edu	36	1	232433917	232433917	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	232433917	232433917	G	A	SNP	SLC35F3	NM_173508	human	genbank	54_36p	1	provisional	missense	c.415	p.V139M	0.96	NULL	"superfamily_SSF103481,HMMPfam_DUF6"	-	no_errors
TARBP1	6894	genome.wustl.edu	36	1	232620564	232620564	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	232620564	232620564	A	G	SNP	TARBP1	NM_005646	human	genbank	54_36p	-1	reviewed	silent	c.3594	p.A1198	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_SSF75217,HMMPfam_SpoU_methylase"	-	no_errors
RBM34	23029	genome.wustl.edu	36	1	233390906	233390906	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	233390906	233390906	A	G	SNP	RBM34	NM_015014	human	genbank	54_36p	-1	provisional	silent	c.138	p.G46	0	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ARID4B	51742	genome.wustl.edu	36	1	233411552	233411552	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	233411552	233411552	T	C	SNP	ARID4B	NM_016374	human	genbank	54_36p	-1	reviewed	missense	c.3305	p.N1102S	1	NULL	"HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
LYST	1130	genome.wustl.edu	36	1	233964493	233964493	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	233964493	233964493	C	T	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	silent	c.8448	p.L2816	0.05	NULL	"PatternScan_COPPER_BLUE,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LYST	1130	genome.wustl.edu	36	1	234032919	234032919	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234032919	234032919	C	A	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.3624	p.Q1208H	1	NULL	"HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
LYST	1130	genome.wustl.edu	36	1	234036550	234036550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234036550	234036550	G	A	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.2509	p.P837S	0.52	NULL	"HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
LGALS8	3964	genome.wustl.edu	36	1	234767484	234767484	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234767484	234767484	G	A	SNP	LGALS8	NM_006499	human	genbank	54_36p	1	reviewed	missense	c.110	p.G37E	1	"superfamily_ConA_like_lec_gl,HMMSmart_GLECT,HMMPfam_Gal-bind_lectin"	"superfamily_ConA_like_lec_gl,HMMSmart_GLECT,HMMPfam_Gal-bind_lectin"	-	no_errors
ACTN2	88	genome.wustl.edu	36	1	234972931	234972931	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234972931	234972931	G	T	SNP	ACTN2	NM_001103	human	genbank	54_36p	1	reviewed	missense	c.1220	p.R407M	0.78	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235722886	235722886	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235722886	235722886	G	A	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.1837	p.V613I	0.98	HMMPfam_RYDR_ITPR	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235844061	235844061	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235844061	235844061	C	G	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.5010	p.H1670Q	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235844285	235844285	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235844285	235844285	A	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.5234	p.K1745T	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235904746	235904746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235904746	235904746	C	G	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.8807	p.A2936G	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235930157	235930157	+	Missense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	235930157	235930157	T	A	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.9134	p.V3045E	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235930267	235930267	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235930267	235930267	C	A	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.9244	p.H3082N	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235947258	235947258	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235947258	235947258	G	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.10461	p.E3487D	0.99	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236003483	236003483	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	236003483	236003483	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.11687	p.D3896V	1	HMMPfam_RIH_assoc	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236031821	236031821	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	236031821	236031821	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	silent	c.14133	p.G4711	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236060514	236060514	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	236060514	236060514	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.14717	p.E4906V	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
CHRM3	1131	genome.wustl.edu	36	1	238138533	238138533	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	C	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	238138533	238138533	G	C	SNP	CHRM3	NM_000740	human	genbank	54_36p	1	reviewed	missense	c.1159	p.D387H	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CHRM3	1131	genome.wustl.edu	36	1	238138701	238138701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	238138701	238138701	G	A	SNP	CHRM3	NM_000740	human	genbank	54_36p	1	reviewed	missense	c.1327	p.V443I	0.02	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
MDS2	259283	genome.wustl.edu	36	1	23838327	23838327	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23838327	23838327	A	G	SNP	MDS2	ENST00000374555	human	ensembl	54_36p	1	known	missense	c.145	p.S49G	0	NULL	NULL	-	no_errors
MDS2	259283	genome.wustl.edu	36	1	23838757	23838757	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23838757	23838757	C	A	SNP	MDS2	ENST00000374555	human	ensembl	54_36p	1	known	missense	c.147	p.S49R	0.03	NULL	NULL	-	no_errors
FMN2	56776	genome.wustl.edu	36	1	238437160	238437160	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	238437160	238437160	C	A	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	missense	c.2854	p.Q952K	0.6	HMMSmart_SM00498	"PatternScan_LECTIN_LEGUME_BETA,HMMSmart_SM00498,HMMPfam_Drf_FH1,superfamily_Formin homology 2 domain (FH2 domain),HMMPfam_FH2"	-	no_errors
RGS7	6000	genome.wustl.edu	36	1	239032743	239032743	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239032743	239032743	C	T	SNP	RGS7	ENST00000407905	human	ensembl	54_36p	-1	known	missense	c.1361	p.G454D	0	superfamily_Regulat_G_prot_signal_superfam	"superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_stop_codon
RGS7	6000	genome.wustl.edu	36	1	239099994	239099994	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239099994	239099994	A	T	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	missense	c.434	p.L145H	1	NULL	"superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
RGS7	6000	genome.wustl.edu	36	1	239328677	239328677	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239328677	239328677	G	A	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	silent	c.87	p.D29	1	superfamily_SSF46785	"HMMPfam_RGS,HMMSmart_RGS,HMMPfam_DEP,HMMSmart_DEP,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF46785"	-	no_errors
FH	2271	genome.wustl.edu	36	1	239730425	239730425	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239730425	239730425	G	C	SNP	FH	NM_000143	human	genbank	54_36p	-1	reviewed	missense	c.1325	p.T442R	1	superfamily_L-aspartase-like	"superfamily_L-aspartase-like,HMMPfam_Lyase_1,PatternScan_FUMARATE_LYASES,HMMPfam_FumaraseC_C"	-	no_errors
KMO	8564	genome.wustl.edu	36	1	239798427	239798427	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239798427	239798427	C	A	SNP	KMO	NM_003679	human	genbank	54_36p	1	validated	missense	c.814	p.L272I	0.99	superfamily_FAD/NAD(P)-binding domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO"	-	no_errors
KMO	8564	genome.wustl.edu	36	1	239820012	239820012	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239820012	239820012	T	G	SNP	KMO	NM_003679	human	genbank	54_36p	1	validated	missense	c.1174	p.S392A	0.29	superfamily_FAD/NAD(P)-binding domain	"HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
EXO1	9156	genome.wustl.edu	36	1	240083293	240083293	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240083293	240083293	G	A	SNP	EXO1	NM_006027	human	genbank	54_36p	1	reviewed	missense	c.292	p.A98T	0.98	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like"	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
MAP1LC3C	440738	genome.wustl.edu	36	1	240226291	240226291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240226291	240226291	C	T	SNP	MAP1LC3C	NM_001004343	human	genbank	54_36p	-1	validated	missense	c.241	p.A81T	0.1	"superfamily_SSF54236,HMMPfam_MAP1_LC3"	"superfamily_SSF54236,HMMPfam_MAP1_LC3"	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240343860	240343860	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240343860	240343860	A	C	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.749	p.I250S	1	"HMMPfam_PLD_envelope,superfamily_SSF56024"	"superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope"	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240354478	240354478	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240354478	240354478	C	A	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.572	p.W191L	1	HMMPfam_PLD_envelope	"HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024"	-	no_errors
LOC646330	646330	genome.wustl.edu	36	1	24100689	24100689	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	24100689	24100689	G	A	SNP	LOC646330	XR_017189	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CEP170	9859	genome.wustl.edu	36	1	241402644	241402644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	241402644	241402644	G	A	SNP	CEP170	NM_014812	human	genbank	54_36p	-1	reviewed	missense	c.1694	p.T565I	1	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA"	-	no_errors
ADSS	159	genome.wustl.edu	36	1	242645991	242645991	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	242645991	242645991	G	C	SNP	ADSS	NM_001126	human	genbank	54_36p	-1	reviewed	silent	c.1083	p.T361	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Adenylsucc_synt,HMMSmart_SM00788"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_1,PatternScan_ADENYLOSUCCIN_SYN_2"	-	no_errors
ADSS	159	genome.wustl.edu	36	1	242653964	242653964	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	242653964	242653964	G	T	SNP	ADSS	NM_001126	human	genbank	54_36p	-1	reviewed	silent	c.495	p.G165	0.85	"HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_2,PatternScan_ADENYLOSUCCIN_SYN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243770770	243770770	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243770770	243770770	C	T	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	silent	c.1245	p.L415	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243770848	243770848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243770848	243770848	G	C	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	missense	c.1323	p.K441N	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243876204	243876207	+	Splice_Site	DEL	AAGT	AAGT	-	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	AAGT	AAGT	AAGT	-	AAGT	AAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243876204	243876207	AAGT	-	DEL	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	splice_site_del	c.2257_2258	p.K753fs	1.000:1.000	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"(deletion:cds_exon[243876046,243876205], intron[243876206,243914157])"	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243928855	243928855	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243928855	243928855	G	A	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	missense	c.6071	p.R2024H	1	NULL	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TFB2M	64216	genome.wustl.edu	36	1	244770987	244770987	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	244770987	244770987	C	G	SNP	TFB2M	NM_022366	human	genbank	54_36p	-1	validated	missense	c.1160	p.W387S	0.31	NULL	"PatternScan_RRNA_A_DIMETH,superfamily_SSF53335,HMMPfam_RrnaAD"	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245080990	245080990	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245080990	245080990	A	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.4941	p.S1647R	0.86	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245087640	245087640	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245087640	245087640	A	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.4232	p.L1411H	0.08	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245137665	245137665	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245137665	245137665	C	G	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.575	p.G192A	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
ZNF496	84838	genome.wustl.edu	36	1	245531178	245531178	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245531178	245531178	C	G	SNP	ZNF496	NM_032752	human	genbank	54_36p	-1	provisional	missense	c.1030	p.E344Q	0	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245648896	245648896	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245648896	245648896	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.177	p.I59M	0.93	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN"	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1"	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245654347	245654347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245654347	245654347	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.979	p.R327G	0.09	HMMPfam_NACHT	"HMMPfam_LRR_1,HMMSmart_LRR_RI,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245666066	245666066	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245666066	245666066	G	C	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	splice_site	c.2669+1	e6+1	1	-	-	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245673982	245673982	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245673982	245673982	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.2755	p.L919V	0.33	"HMMPfam_LRR_1,superfamily_SSF52047"	"HMMPfam_LRR_1,HMMSmart_LRR_RI,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
OR2W5	441932	genome.wustl.edu	36	1	245721382	245721382	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245721382	245721382	C	A	SNP	OR2W5	NM_001004698	human	genbank	54_36p	1	provisional	silent	c.330	p.T110	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR2C3	81472	genome.wustl.edu	36	1	245761802	245761802	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245761802	245761802	A	C	SNP	OR2C3	NM_198074	human	genbank	54_36p	-1	validated	missense	c.632	p.L211R	0.12	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR14K1	343170	genome.wustl.edu	36	1	245968742	245968742	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245968742	245968742	A	T	SNP	OR14K1	ENST00000283225	human	ensembl	54_36p	1	known	missense	c.203	p.D68V	0.08	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2L8	391190	genome.wustl.edu	36	1	246179561	246179561	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246179561	246179561	G	C	SNP	OR2L8	NM_001001963	human	genbank	54_36p	1	provisional	missense	c.779	p.R260P	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2AK2	391191	genome.wustl.edu	36	1	246195322	246195322	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246195322	246195322	T	A	SNP	OR2AK2	NM_001004491	human	genbank	54_36p	1	provisional	missense	c.66	p.S22R	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2L1P	26247	genome.wustl.edu	36	1	246220752	246220752	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246220752	246220752	C	T	SNP	OR2L1P	NR_002145	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.02	-	-	-	pseudogene
OR2T33	391195	genome.wustl.edu	36	1	246502789	246502789	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246502789	246502789	G	T	SNP	OR2T33	NM_001004695	human	genbank	54_36p	-1	provisional	missense	c.951	p.H317Q	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T6	254879	genome.wustl.edu	36	1	246617696	246617696	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246617696	246617696	T	C	SNP	OR2T6	NM_001005471	human	genbank	54_36p	1	provisional	missense	c.164	p.L55P	0.99	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2G6	391211	genome.wustl.edu	36	1	246752148	246752148	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246752148	246752148	C	T	SNP	OR2G6	NM_001013355	human	genbank	54_36p	1	validated	missense	c.578	p.T193I	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T34	127068	genome.wustl.edu	36	1	246804504	246804504	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246804504	246804504	G	T	SNP	OR2T34	NM_001001821	human	genbank	54_36p	-1	provisional	missense	c.178	p.L60I	0.96	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T35	403244	genome.wustl.edu	36	1	246868520	246868520	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	246868520	246868520	G	A	SNP	OR2T35	NM_001001827	human	genbank	54_36p	-1	provisional	silent	c.663	p.I221	0.42	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PGBD2	267002	genome.wustl.edu	36	1	247178593	247178593	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	247178593	247178593	G	C	SNP	PGBD2	NM_170725	human	genbank	54_36p	1	validated	missense	c.1187	p.G396A	1	NULL	NULL	-	no_errors
SRRM1	10250	genome.wustl.edu	36	1	24850623	24850623	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	24850623	24850623	A	G	SNP	SRRM1	NM_005839	human	genbank	54_36p	1	validated	missense	c.658	p.T220A	0.82	NULL	"superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI"	-	no_errors
LDLRAP1	26119	genome.wustl.edu	36	1	25753004	25753004	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	25753004	25753004	G	T	SNP	LDLRAP1	NM_015627	human	genbank	54_36p	1	reviewed	silent	c.93	p.L31	1	superfamily_SSF50729	"superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	-	no_errors
SEPN1	57190	genome.wustl.edu	36	1	26007750	26007750	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26007750	26007750	T	A	SNP	SEPN1	ENST00000354177	human	ensembl	54_36p	1	known	silent	c.528	p.L176	0.69	NULL	NULL	-	no_errors
ZNF683	257101	genome.wustl.edu	36	1	26566839	26566839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26566839	26566839	C	G	SNP	ZNF683	NM_173574	human	genbank	54_36p	-1	validated	missense	c.151	p.D51H	0.01	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARID1A	8289	genome.wustl.edu	36	1	26960004	26960004	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26960004	26960004	C	G	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	nonsense	c.1991	p.S664*	1	NULL	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
ARID1A	8289	genome.wustl.edu	36	1	26974783	26974783	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26974783	26974783	C	T	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	nonsense	c.5122	p.Q1708*	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like"	-	no_errors
PIGV	55650	genome.wustl.edu	36	1	26993844	26993844	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26993844	26993844	G	T	SNP	PIGV	NM_017837	human	genbank	54_36p	1	validated	silent	c.732	p.S244	0	HMMPfam_Mannosyl_trans2	HMMPfam_Mannosyl_trans2	-	no_errors
C1orf172	126695	genome.wustl.edu	36	1	27150987	27150987	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27150987	27150987	T	C	SNP	C1orf172	NM_152365	human	genbank	54_36p	-1	predicted	missense	c.472	p.S158G	1	NULL	NULL	-	no_errors
SLC9A1	6548	genome.wustl.edu	36	1	27300285	27300285	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27300285	27300285	G	A	SNP	SLC9A1	NM_003047	human	genbank	54_36p	-1	validated	silent	c.2106	p.G702	1	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
WDTC1	23038	genome.wustl.edu	36	1	27505417	27505417	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27505417	27505417	G	A	SNP	WDTC1	NM_015023	human	genbank	54_36p	1	validated	missense	c.1987	p.D663N	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
SYTL1	84958	genome.wustl.edu	36	1	27549949	27549949	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27549949	27549949	C	A	SNP	SYTL1	NM_032872	human	genbank	54_36p	1	provisional	missense	c.1047	p.N349K	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"PatternScan_ATPASE_ALPHA_BETA,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
RPA2	6118	genome.wustl.edu	36	1	28113723	28113723	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28113723	28113723	A	C	SNP	RPA2	ENST00000373909	human	ensembl	54_36p	-1	known	splice_site	c.34+2	e1+2	0	-	-	-	no_errors
EYA3	2140	genome.wustl.edu	36	1	28234668	28234668	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28234668	28234668	G	T	SNP	EYA3	NM_001990	human	genbank	54_36p	-1	reviewed	missense	c.335	p.T112N	1	NULL	HMMPfam_Hydrolase	-	no_errors
SESN2	83667	genome.wustl.edu	36	1	28474027	28474027	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28474027	28474027	C	T	SNP	SESN2	NM_031459	human	genbank	54_36p	1	reviewed	silent	c.1125	p.Y375	1	HMMPfam_PA26	"HMMPfam_PA26,superfamily_SSF69118"	-	no_errors
YTHDF2	51441	genome.wustl.edu	36	1	28942432	28942432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28942432	28942432	C	T	SNP	YTHDF2	NM_016258	human	genbank	54_36p	1	validated	missense	c.1063	p.R355W	1	NULL	HMMPfam_YTH	-	no_errors
OPRD1	4985	genome.wustl.edu	36	1	29058393	29058393	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	29058393	29058393	C	A	SNP	OPRD1	NM_000911	human	genbank	54_36p	1	validated	missense	c.568	p.R190S	0.5	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MECR	51102	genome.wustl.edu	36	1	29395312	29395312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	29395312	29395312	G	A	SNP	MECR	ENST00000373792	human	ensembl	54_36p	-1	known	missense	c.757	p.R253C	0.42	NULL	"HMMPfam_ADH_N,superfamily_GroES-like"	-	no_errors
MECR	51102	genome.wustl.edu	36	1	29401139	29401139	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	29401139	29401139	T	A	SNP	MECR	NM_016011	human	genbank	54_36p	-1	validated	missense	c.659	p.D220V	0.97	"HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains"	"superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
SDC3	9672	genome.wustl.edu	36	1	31122403	31122403	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31122403	31122403	C	T	SNP	SDC3	NM_014654	human	genbank	54_36p	-1	validated	silent	c.453	p.E151	0.99	HMMPfam_Syndecan	"HMMPfam_Syndecan,HMMSmart_SM00294,PatternScan_SYNDECAN"	-	no_errors
PUM1	9698	genome.wustl.edu	36	1	31211533	31211533	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31211533	31211533	T	C	SNP	PUM1	NM_001020658	human	genbank	54_36p	-1	reviewed	missense	c.1969	p.S657G	1	NULL	"superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025"	-	no_errors
HCRTR1	3061	genome.wustl.edu	36	1	31857836	31857836	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31857836	31857836	G	T	SNP	HCRTR1	NM_001525	human	genbank	54_36p	1	reviewed	missense	c.316	p.V106L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31919092	31919092	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31919092	31919092	C	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	splice_site	c.2610+1	e38+1	1	-	-	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31924299	31924299	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31924299	31924299	C	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	missense	c.1864	p.A622T	0.59	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31936097	31936097	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31936097	31936097	G	C	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	silent	c.654	p.V218	0.13	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases"	"HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
BAI2	576	genome.wustl.edu	36	1	31994579	31994579	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31994579	31994579	G	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.446	p.T149N	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32029433	32029433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32029433	32029433	C	T	SNP	SPOCD1	ENST00000294514	human	ensembl	54_36p	-1	known	missense	c.863	p.R288K	0.86	HMMPfam_SPOC	"HMMSmart_SM00510,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC"	-	no_start_codon
SPOCD1	90853	genome.wustl.edu	36	1	32036456	32036456	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32036456	32036456	A	C	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.2084	p.M695R	1	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510"	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32038045	32038045	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32038045	32038045	G	C	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.1735	p.P579A	0	NULL	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32053079	32053079	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32053079	32053079	G	T	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.443	p.A148D	0	NULL	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
TXLNA	200081	genome.wustl.edu	36	1	32433268	32433268	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32433268	32433268	G	T	SNP	TXLNA	NM_175852	human	genbank	54_36p	1	validated	missense	c.1526	p.G509V	0.14	NULL	HMMPfam_Taxilin	-	no_errors
IQCC	55721	genome.wustl.edu	36	1	32444411	32444411	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32444411	32444411	C	G	SNP	IQCC	NM_018134	human	genbank	54_36p	1	provisional	missense	c.112	p.R38G	0.74	NULL	HMMPfam_IQ	-	no_errors
MARCKSL1	65108	genome.wustl.edu	36	1	32572997	32572997	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32572997	32572997	G	A	SNP	MARCKSL1	NM_023009	human	genbank	54_36p	-1	validated	nonsense	c.376	p.Q126*	1	NULL	"HMMPfam_MARCKS,PatternScan_MARCKS_1,PatternScan_MARCKS_2"	-	no_errors
RBBP4	5928	genome.wustl.edu	36	1	32895695	32895695	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32895695	32895695	C	A	SNP	RBBP4	NM_005610	human	genbank	54_36p	1	reviewed	missense	c.245	p.A82D	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
FNDC5	252995	genome.wustl.edu	36	1	33106019	33106019	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33106019	33106019	T	A	SNP	FNDC5	NM_153756	human	genbank	54_36p	-1	provisional	missense	c.196	p.M66L	1	NULL	"superfamily_FN_III-like,HMMPfam_fn3"	-	no_errors
AK2	204	genome.wustl.edu	36	1	33251378	33251378	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33251378	33251378	C	G	SNP	AK2	NM_001625	human	genbank	54_36p	-1	reviewed	missense	c.711	p.M237I	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE,superfamily_Microbial and mitochondrial ADK insert zinc finger domain,HMMPfam_ADK_lid"	-	no_errors
ADC	113451	genome.wustl.edu	36	1	33332896	33332896	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33332896	33332896	G	C	SNP	ADC	NM_052998	human	genbank	54_36p	1	validated	missense	c.748	p.E250Q	1	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,superfamily_Alanine racemase C-terminal domain-like"	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC"	-	no_errors
ZSCAN20	7579	genome.wustl.edu	36	1	33717802	33717802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33717802	33717802	C	A	SNP	ZSCAN20	NM_145238	human	genbank	54_36p	1	validated	missense	c.326	p.T109N	0.99	"HMMPfam_SCAN,HMMSmart_SM00431"	"HMMPfam_SCAN,HMMSmart_SM00431,HMMSmart_SM00717,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZSCAN20	7579	genome.wustl.edu	36	1	33731718	33731718	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33731718	33731718	A	G	SNP	ZSCAN20	NM_145238	human	genbank	54_36p	1	validated	missense	c.1789	p.T597A	0	NULL	"HMMSmart_SM00717,HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ARHGEF16	27237	genome.wustl.edu	36	1	3379574	3379574	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	3379574	3379574	G	A	SNP	ARHGEF16	NM_014448	human	genbank	54_36p	1	reviewed	silent	c.231	p.E77	0.94	"HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_RhoGEF"	"HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_1"	-	no_errors
CSMD2	114784	genome.wustl.edu	36	1	33805984	33805984	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33805984	33805984	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	54_36p	-1	known	missense	c.8176	p.D2726N	0	NULL	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC"	-	no_errors
GJB5	2709	genome.wustl.edu	36	1	34996257	34996257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	34996257	34996257	G	A	SNP	GJB5	NM_005268	human	genbank	54_36p	1	provisional	missense	c.739	p.D247N	0.86	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
GJB4	127534	genome.wustl.edu	36	1	35000167	35000167	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35000167	35000167	G	T	SNP	GJB4	NM_153212	human	genbank	54_36p	1	validated	missense	c.725	p.G242V	0	NULL	"HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
DLGAP3	58512	genome.wustl.edu	36	1	35105308	35105308	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	35105308	35105308	G	C	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	missense	c.2649	p.I883M	0.99	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
ZMYM6	9204	genome.wustl.edu	36	1	35226961	35226961	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35226961	35226961	A	C	SNP	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	missense	c.2309	p.I770S	1	NULL	"HMMPfam_zf-FCS,HMMSmart_SM00746"	-	no_errors
ZMYM6	9204	genome.wustl.edu	36	1	35247025	35247025	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35247025	35247025	T	C	SNP	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	missense	c.1580	p.N527S	0.99	"HMMPfam_zf-FCS,HMMSmart_SM00746"	"HMMPfam_zf-FCS,HMMSmart_SM00746"	-	no_errors
SFPQ	6421	genome.wustl.edu	36	1	35427386	35427394	+	In_Frame_Del	DEL	GATTTGCCT	GATTTGCCT	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GATTTGCCT	GATTTGCCT	GATTTGCCT	-	GATTTGCCT	GATTTGCCT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35427386	35427394	GATTTGCCT	-	DEL	SFPQ	NM_005066	human	genbank	54_36p	-1	validated	in_frame_del	c.1600_1592	p.QAN531in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_NOPS"	"(deletion:cds_exon[35427374,35427570])"	no_errors
CLSPN	63967	genome.wustl.edu	36	1	35998743	35998743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35998743	35998743	G	C	SNP	CLSPN	NM_022111	human	genbank	54_36p	-1	reviewed	missense	c.1366	p.L456V	0.16	NULL	NULL	-	no_errors
EIF2C1	26523	genome.wustl.edu	36	1	36140456	36140456	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36140456	36140456	G	T	SNP	EIF2C1	NM_012199	human	genbank	54_36p	1	reviewed	missense	c.1328	p.G443V	1	NULL	"superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi"	-	no_errors
TP73	7161	genome.wustl.edu	36	1	3614185	3614185	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	3614185	3614185	G	T	SNP	TP73	NM_005427	human	genbank	54_36p	1	reviewed	missense	c.399	p.Q133H	1	"HMMPfam_P53,superfamily_p53-like transcription factors"	"HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain"	-	no_errors
THRAP3	9967	genome.wustl.edu	36	1	36527461	36527461	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36527461	36527461	T	G	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	missense	c.1254	p.F418L	1	NULL	NULL	-	no_errors
THRAP3	9967	genome.wustl.edu	36	1	36534860	36534860	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36534860	36534860	T	A	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	silent	c.2205	p.G735	0.98	NULL	NULL	-	no_errors
OSCP1	127700	genome.wustl.edu	36	1	36656411	36656411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36656411	36656411	G	C	SNP	C1orf102	NM_145047	human	genbank	54_36p	-1	validated	missense	c.1086	p.I362M	1	NULL	HMMPfam_Oscp1	-	no_errors
DFFB	1677	genome.wustl.edu	36	1	3772119	3772119	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	3772119	3772119	T	C	SNP	DFFB	ENST00000378212	human	ensembl	54_36p	1	known	silent	c.294	p.P98	0	NULL	"superfamily_SSF54277,HMMPfam_CIDE-N"	-	no_errors
DNALI1	7802	genome.wustl.edu	36	1	37799838	37799838	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	37799838	37799838	A	G	SNP	DNALI1	NM_003462	human	genbank	54_36p	1	reviewed	missense	c.557	p.Y186C	1	HMMPfam_Ax_dynein_light	HMMPfam_Ax_dynein_light	-	no_errors
MTF1	4520	genome.wustl.edu	36	1	38076900	38076900	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	38076900	38076900	C	T	SNP	MTF1	NM_005955	human	genbank	54_36p	-1	reviewed	missense	c.763	p.G255R	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MACF1	23499	genome.wustl.edu	36	1	39677659	39677659	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	39677659	39677659	C	G	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.13676	p.A4559G	1	"superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC"	"superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2"	-	no_errors
BMP8B	656	genome.wustl.edu	36	1	40002958	40002958	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	40002958	40002958	T	C	SNP	BMP8B	NM_001720	human	genbank	54_36p	-1	reviewed	silent	c.792	p.A264	0.98	NULL	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
CAP1	10487	genome.wustl.edu	36	1	40302763	40302763	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	40302763	40302763	A	G	SNP	CAP1	NM_001105530	human	genbank	54_36p	1	reviewed	missense	c.469	p.M157V	1	"HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP"	"HMMPfam_CAP_N,PatternScan_CAP_1,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMSmart_SM00673,PatternScan_CAP_2"	-	no_errors
HIVEP3	59269	genome.wustl.edu	36	1	41820483	41820483	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	41820483	41820483	A	G	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.2573	p.I858T	1	NULL	"PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42934991	42934991	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42934991	42934991	C	G	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	missense	c.446	p.P149R	1	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK"	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42935444	42935444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42935444	42935444	G	C	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	missense	c.664	p.D222H	1	NULL	"HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK"	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42939246	42939246	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42939246	42939246	C	T	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	silent	c.948	p.P316	1	NULL	"HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK"	-	no_errors
LEPRE1	64175	genome.wustl.edu	36	1	42996119	42996119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42996119	42996119	G	A	SNP	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	silent	c.1002	p.D334	0.99	superfamily_SSF48452	"superfamily_SSF48452,HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	-	no_errors
ZNF691	51058	genome.wustl.edu	36	1	43089259	43089259	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43089259	43089259	G	A	SNP	ZNF691	NM_015911	human	genbank	54_36p	1	provisional	missense	c.43	p.E15K	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FAM183A	440585	genome.wustl.edu	36	1	43389041	43389041	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43389041	43389041	C	G	SNP	FAM183A	NM_001101376	human	genbank	54_36p	1	validated	silent	c.156	p.P52	1	NULL	NULL	-	no_errors
KIAA0467	23334	genome.wustl.edu	36	1	43664194	43664194	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43664194	43664194	G	A	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	silent	c.390	p.P130	0	NULL	NULL	-	no_errors
KIAA0467	23334	genome.wustl.edu	36	1	43669239	43669239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43669239	43669239	G	A	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	missense	c.2110	p.V704I	0	NULL	NULL	-	no_errors
HYI	81888	genome.wustl.edu	36	1	43690208	43690208	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43690208	43690208	C	T	SNP	HYI	NM_031207	human	genbank	54_36p	-1	provisional	missense	c.271	p.D91N	1	"superfamily_Xyl_isomerase-like_TIM-brl,HMMPfam_AP_endonuc_2"	"superfamily_Xyl_isomerase-like_TIM-brl,HMMPfam_AP_endonuc_2"	-	no_errors
PTPRF	5792	genome.wustl.edu	36	1	43842098	43842098	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43842098	43842098	C	G	SNP	PTPRF	NM_002840	human	genbank	54_36p	1	reviewed	missense	c.2688	p.N896K	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	###############################################################################################################################################################################################################################################################	-	no_errors
ST3GAL3	6487	genome.wustl.edu	36	1	44063084	44063084	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44063084	44063084	C	G	SNP	ST3GAL3	NM_174963	human	genbank	54_36p	1	reviewed	missense	c.349	p.P117A	0	NULL	HMMPfam_Glyco_transf_29	-	no_errors
B4GALT2	8704	genome.wustl.edu	36	1	44223557	44223557	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44223557	44223557	T	G	SNP	B4GALT2	NM_001005417	human	genbank	54_36p	1	reviewed	missense	c.761	p.F254C	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2"	-	no_errors
LOC644743	644743	genome.wustl.edu	36	1	44342745	44342745	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44342745	44342745	C	T	SNP	LOC644743	XR_016703	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC644743	644743	genome.wustl.edu	36	1	44342810	44342810	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44342810	44342810	C	T	SNP	LOC644743	XR_016703	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RNF220	55182	genome.wustl.edu	36	1	44650891	44650891	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44650891	44650891	G	A	SNP	RNF220	NM_018150	human	genbank	54_36p	1	validated	missense	c.535	p.V179I	1	NULL	superfamily_RING/U-box	-	no_errors
PTCH2	8643	genome.wustl.edu	36	1	45070287	45070287	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45070287	45070287	T	A	SNP	PTCH2	NM_003738	human	genbank	54_36p	-1	validated	nonsense	c.472	p.K158*	1	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
LOC128192	128192	genome.wustl.edu	36	1	45226714	45226714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45226714	45226714	G	A	SNP	LOC128192	XM_060887	human	genbank	54_36p	-1	model	missense	c.271	p.H91Y	1	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase"	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
TESK2	10420	genome.wustl.edu	36	1	45583360	45583360	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45583360	45583360	G	C	SNP	TESK2	NM_007170	human	genbank	54_36p	-1	reviewed	silent	c.1455	p.R485	0.98	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TESK2	10420	genome.wustl.edu	36	1	45660000	45660000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45660000	45660000	G	A	SNP	TESK2	NM_007170	human	genbank	54_36p	-1	reviewed	missense	c.328	p.H110Y	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46264028	46264028	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46264028	46264028	T	A	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.1873	p.Y625N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"HMMPfam_DUF1908,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46267163	46267163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46267163	46267163	C	T	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.2189	p.P730L	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46274325	46274325	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46274325	46274325	G	C	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	nonstop	c.5397	p.*1799Y	0.78	NULL	"HMMSmart_SM00219,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
TSPAN1	10103	genome.wustl.edu	36	1	46423344	46423344	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46423344	46423344	C	T	SNP	TSPAN1	NM_005727	human	genbank	54_36p	1	reviewed	silent	c.564	p.T188	0	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
C1orf190	541468	genome.wustl.edu	36	1	46441791	46441791	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46441791	46441791	G	C	SNP	C1orf190	NM_001013615	human	genbank	54_36p	1	validated	missense	c.106	p.E36Q	0.99	NULL	NULL	-	no_errors
RAD54L	8438	genome.wustl.edu	36	1	46516416	46516416	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46516416	46516416	A	G	SNP	RAD54L	NM_003579	human	genbank	54_36p	1	reviewed	missense	c.2119	p.N707D	1	NULL	"HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
FAAH	2166	genome.wustl.edu	36	1	46644044	46644044	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46644044	46644044	A	G	SNP	FAAH	NM_001441	human	genbank	54_36p	1	reviewed	missense	c.776	p.N259S	0.81	"superfamily_Amidase_sig_enz,HMMPfam_Amidase"	"superfamily_Amidase_sig_enz,HMMPfam_Amidase,PatternScan_AMIDASES"	-	no_errors
DMBX1	127343	genome.wustl.edu	36	1	46750477	46750477	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46750477	46750477	G	A	SNP	DMBX1	NM_147192	human	genbank	54_36p	1	reviewed	silent	c.873	p.P291	0.84	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
MKNK1	8569	genome.wustl.edu	36	1	46824234	46824234	+	Splice_Site	SNP	C	G	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	46824234	46824234	C	G	SNP	MKNK1	ENST00000371949	human	ensembl	54_36p	-1	known	splice_site	c.1-1	e1-1	1	-	-	-	no_errors
CYP4Z2P	163720	genome.wustl.edu	36	1	47097990	47097990	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	47097990	47097990	A	C	SNP	CYP4Z2P	NR_002788	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.99	-	-	-	pseudogene
CYP4A11	1579	genome.wustl.edu	36	1	47171248	47171248	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	47171248	47171248	G	T	SNP	CYP4A11	NM_000778	human	genbank	54_36p	-1	reviewed	missense	c.1281	p.N427K	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4X1	260293	genome.wustl.edu	36	1	47274354	47274354	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	47274354	47274354	C	G	SNP	CYP4X1	NM_178033	human	genbank	54_36p	1	reviewed	missense	c.699	p.H233Q	1	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
SLC5A9	200010	genome.wustl.edu	36	1	48470284	48470284	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	48470284	48470284	C	A	SNP	SLC5A9	NM_001011547	human	genbank	54_36p	1	validated	silent	c.825	p.T275	1	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
SLC5A9	200010	genome.wustl.edu	36	1	48477635	48477635	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	48477635	48477635	C	T	SNP	SLC5A9	NM_001011547	human	genbank	54_36p	1	validated	silent	c.1570	p.L524	1	NULL	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
SPATA6	54558	genome.wustl.edu	36	1	48593979	48593979	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	48593979	48593979	G	A	SNP	SPATA6	NM_019073	human	genbank	54_36p	-1	provisional	missense	c.1144	p.R382W	1	NULL	NULL	-	no_errors
LOC343184	343184	genome.wustl.edu	36	1	50564582	50564582	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	50564582	50564582	C	T	SNP	LOC343184	XR_016832	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
FAF1	11124	genome.wustl.edu	36	1	50713925	50713925	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	50713925	50713925	G	C	SNP	FAF1	NM_007051	human	genbank	54_36p	-1	reviewed	silent	c.1668	p.S556	1	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00594,HMMSmart_SM00166,HMMPfam_UBX"	-	no_errors
CFLP2	391039	genome.wustl.edu	36	1	51396749	51396749	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	51396749	51396749	G	C	SNP	LOC391039	XR_017560	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
ZFYVE9	9372	genome.wustl.edu	36	1	52584418	52584418	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	52584418	52584418	C	G	SNP	ZFYVE9	NM_004799	human	genbank	54_36p	1	reviewed	missense	c.4215	p.C1405W	1	NULL	"HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZCCHC11	23318	genome.wustl.edu	36	1	52713761	52713761	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	52713761	52713761	G	A	SNP	ZCCHC11	NM_001009881	human	genbank	54_36p	-1	validated	silent	c.2058	p.S686	1	superfamily_PAP/OAS1 substrate-binding domain	"PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2"	-	no_errors
SLC1A7	6512	genome.wustl.edu	36	1	53327187	53327187	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	53327187	53327187	T	A	SNP	SLC1A7	NM_006671	human	genbank	54_36p	-1	validated	missense	c.1414	p.I472F	1	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
CDCP2	200008	genome.wustl.edu	36	1	54378331	54378331	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	54378331	54378331	T	A	SNP	CDCP2	NM_201546	human	genbank	54_36p	-1	provisional	missense	c.800	p.N267I	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
PARS2	25973	genome.wustl.edu	36	1	54996168	54996168	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	54996168	54996168	C	A	SNP	PARS2	NM_152268	human	genbank	54_36p	-1	provisional	nonsense	c.1255	p.G419*	1	"superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
BSND	7809	genome.wustl.edu	36	1	55245270	55245270	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	55245270	55245270	G	A	SNP	BSND	NM_057176	human	genbank	54_36p	1	reviewed	silent	c.285	p.Q95	0.97	NULL	NULL	-	no_errors
PCSK9	255738	genome.wustl.edu	36	1	55296327	55296327	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	55296327	55296327	C	A	SNP	PCSK9	NM_174936	human	genbank	54_36p	1	reviewed	missense	c.1211	p.P404Q	0.51	"superfamily_Subtilisin-like,HMMPfam_Peptidase_S8"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8"	-	no_errors
USP24	23358	genome.wustl.edu	36	1	55316852	55316852	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	55316852	55316852	A	G	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.6781	p.Y2261H	1	NULL	"superfamily_Ubiquitin-like,PatternScan_SUGAR_TRANSPORT_1,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
OR4F5	79501	genome.wustl.edu	36	1	59401	59401	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	59401	59401	G	A	SNP	OR4F5	NM_001005484	human	genbank	54_36p	1	provisional	missense	c.448	p.V150M	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FGGY	55277	genome.wustl.edu	36	1	60000837	60000837	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	60000837	60000837	A	G	SNP	FGGY	NM_018291	human	genbank	54_36p	1	validated	missense	c.1313	p.D438G	0.02	NULL	"superfamily_SSF53067,HMMPfam_FGGY_C"	-	no_errors
CYP2J2	1573	genome.wustl.edu	36	1	60131951	60131951	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	60131951	60131951	G	T	SNP	CYP2J2	NM_000775	human	genbank	54_36p	-1	reviewed	missense	c.1469	p.S490Y	0.07	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CHD5	26038	genome.wustl.edu	36	1	6129510	6129511	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	6129510	6129511	-	G	INS	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.1392_1391	p.L465fs	0.408:0.998	"superfamily_FYVE_PHD_ZnF,superfamily_Chromodomain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
TM2D1	83941	genome.wustl.edu	36	1	61963351	61963351	+	Silent	SNP	A	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	61963351	61963351	A	C	SNP	TM2D1	NM_032027	human	genbank	54_36p	-1	reviewed	silent	c.30	p.S10	0	NULL	HMMPfam_TM2	-	no_errors
KANK4	163782	genome.wustl.edu	36	1	62509743	62509743	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	62509743	62509743	G	A	SNP	KANK4	NM_181712	human	genbank	54_36p	-1	validated	silent	c.2007	p.N669	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
USP1	7398	genome.wustl.edu	36	1	62688607	62688607	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	62688607	62688607	C	G	SNP	USP1	NM_001017415	human	genbank	54_36p	1	reviewed	missense	c.1725	p.S575R	1	"superfamily_SSF54001,HMMPfam_UCH"	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
DOCK7	85440	genome.wustl.edu	36	1	62892020	62892020	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	62892020	62892020	C	G	SNP	DOCK7	NM_033407	human	genbank	54_36p	-1	validated	missense	c.353	p.R118T	1	NULL	HMMPfam_Ded_cyto	-	no_errors
ATG4C	84938	genome.wustl.edu	36	1	63102353	63102353	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	63102353	63102353	C	A	SNP	ATG4C	NM_032852	human	genbank	54_36p	1	reviewed	missense	c.1312	p.L438I	1	NULL	HMMPfam_Peptidase_C54	-	no_errors
PGM1	5236	genome.wustl.edu	36	1	63874627	63874627	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	63874627	63874627	C	T	SNP	PGM1	NM_002633	human	genbank	54_36p	1	provisional	silent	c.1008	p.P336	1	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_III"	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase C-terminal domain,HMMPfam_PGM_PMM_IV"	-	no_errors
ROR1	4919	genome.wustl.edu	36	1	64375704	64375704	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	64375704	64375704	G	A	SNP	ROR1	NM_005012	human	genbank	54_36p	1	validated	missense	c.547	p.G183S	1	HMMPfam_Fz	###############################################################################################################################################################################################################################################################	-	no_errors
CACHD1	57685	genome.wustl.edu	36	1	64902807	64902807	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	64902807	64902807	C	G	SNP	CACHD1	NM_020925	human	genbank	54_36p	1	validated	silent	c.1980	p.V660	1	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Cache_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
TAS1R1	80835	genome.wustl.edu	36	1	6553862	6553862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	6553862	6553862	G	C	SNP	TAS1R1	NM_138697	human	genbank	54_36p	1	reviewed	missense	c.498	p.M166I	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
DNAJC6	9829	genome.wustl.edu	36	1	65627639	65627639	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	65627639	65627639	G	T	SNP	DNAJC6	NM_014787	human	genbank	54_36p	1	validated	nonsense	c.1135	p.E379*	1	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ"	-	no_errors
WDR78	79819	genome.wustl.edu	36	1	67131676	67131676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67131676	67131676	G	T	SNP	WDR78	NM_024763	human	genbank	54_36p	-1	validated	missense	c.354	p.D118E	0.01	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
MIER1	57708	genome.wustl.edu	36	1	67184458	67184458	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67184458	67184458	A	G	SNP	MIER1	NM_020948	human	genbank	54_36p	1	validated	missense	c.143	p.H48R	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IL12RB2	3595	genome.wustl.edu	36	1	67560092	67560092	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67560092	67560092	T	G	SNP	IL12RB2	NM_001559	human	genbank	54_36p	1	reviewed	missense	c.296	p.F99C	0.86	HMMPfam_Lep_receptor_Ig	"HMMPfam_Lep_receptor_Ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
IL12RB2	3595	genome.wustl.edu	36	1	67567950	67567950	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67567950	67567950	C	A	SNP	IL12RB2	NM_001559	human	genbank	54_36p	1	reviewed	missense	c.757	p.L253M	0.06	"HMMSmart_SM00060,superfamily_Fibronectin type III"	"PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Lep_receptor_Ig"	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	6807755	6807755	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	6807755	6807755	C	T	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	silent	c.132	p.S44	1	NULL	"HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ"	-	no_errors
LOC645291	645291	genome.wustl.edu	36	1	68401297	68401297	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	68401297	68401297	C	T	SNP	LOC645291	XR_017617	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LRRC7	57554	genome.wustl.edu	36	1	69916717	69916717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	69916717	69916717	G	T	SNP	LRRC7	ENST00000370958	human	ensembl	54_36p	1	known	missense	c.68	p.R23L	0.99	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70277021	70277021	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70277021	70277021	G	C	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.2812	p.D938H	1	NULL	"superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70277270	70277270	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70277270	70277270	G	T	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.3061	p.A1021S	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70291391	70291391	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70291391	70291391	T	A	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.4091	p.V1364E	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70346078	70346078	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70346078	70346078	C	A	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.4487	p.P1496H	1	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
NEGR1	257194	genome.wustl.edu	36	1	71849314	71849314	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	71849314	71849314	C	A	SNP	NEGR1	NM_173808	human	genbank	54_36p	-1	validated	missense	c.771	p.W257C	1	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
LRRIQ3	127255	genome.wustl.edu	36	1	74279558	74279558	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	74279558	74279558	T	A	SNP	LRRIQ3	NM_001105659	human	genbank	54_36p	-1	inferred	missense	c.1645	p.S549C	0.02	NULL	"superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1"	-	no_errors
C1orf173	127254	genome.wustl.edu	36	1	74859093	74859093	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	74859093	74859093	G	T	SNP	C1orf173	NM_001002912	human	genbank	54_36p	-1	predicted	missense	c.913	p.P305T	0	NULL	NULL	-	no_errors
TYW3	127253	genome.wustl.edu	36	1	74974865	74974865	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	74974865	74974865	A	G	SNP	TYW3	NM_138467	human	genbank	54_36p	1	provisional	missense	c.226	p.T76A	1	"HMMPfam_TYW3,superfamily_DUF207"	"HMMPfam_TYW3,superfamily_DUF207"	-	no_errors
LHX8	431707	genome.wustl.edu	36	1	75381411	75381411	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	75381411	75381411	C	T	SNP	LHX8	NM_001001933	human	genbank	54_36p	1	validated	missense	c.410	p.S137F	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ACADM	34	genome.wustl.edu	36	1	75978367	75978367	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	75978367	75978367	G	A	SNP	ACADM	NM_000016	human	genbank	54_36p	1	reviewed	missense	c.583	p.G195R	1	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M"	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2"	-	no_errors
MSH4	4438	genome.wustl.edu	36	1	76127640	76127640	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	76127640	76127640	G	T	SNP	MSH4	NM_002440	human	genbank	54_36p	1	validated	nonsense	c.2224	p.E742*	1	"HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac"	"superfamily_DNA_mismatch_repair_MutS_connt,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2"	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7646014	7646014	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	7646014	7646014	G	A	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	missense	c.820	p.V274M	1	NULL	"HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LOC729708	729708	genome.wustl.edu	36	1	76938324	76938324	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	76938324	76938324	G	A	SNP	LOC729708	XM_001133949	human	genbank	54_36p	1	model	missense	c.263	p.R88K	1	"superfamily_Triophos_ismrse,HMMPfam_TIM"	"superfamily_Triophos_ismrse,HMMPfam_TIM,PatternScan_TIM"	-	pseudogene
ZZZ3	26009	genome.wustl.edu	36	1	77817877	77817877	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	77817877	77817877	T	C	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	missense	c.2005	p.K669E	1	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like"	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
ZZZ3	26009	genome.wustl.edu	36	1	77870816	77870816	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	77870816	77870816	G	A	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	missense	c.812	p.S271L	0.99	NULL	"HMMPfam_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding"	-	no_errors
USP33	23032	genome.wustl.edu	36	1	77952922	77952922	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	77952922	77952922	G	C	SNP	USP33	NM_015017	human	genbank	54_36p	-1	validated	missense	c.2273	p.P758R	1	HMMSmart_SM00695	"HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_SM00695"	-	no_errors
PER3	8863	genome.wustl.edu	36	1	7802824	7802824	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	7802824	7802824	C	T	SNP	PER3	NM_016831	human	genbank	54_36p	1	reviewed	missense	c.1697	p.T566I	1	NULL	"HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC"	-	no_errors
PTGFR	5737	genome.wustl.edu	36	1	78774697	78774697	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	78774697	78774697	G	T	SNP	PTGFR	NM_000959	human	genbank	54_36p	1	reviewed	nonsense	c.817	p.G273*	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ELTD1	64123	genome.wustl.edu	36	1	79156241	79156241	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	79156241	79156241	A	G	SNP	ELTD1	NM_022159	human	genbank	54_36p	-1	validated	missense	c.1544	p.L515P	1	HMMPfam_7tm_2	"HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EF_HAND_1,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
LOC729779	729779	genome.wustl.edu	36	1	79293223	79293223	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	79293223	79293223	G	A	SNP	LOC729779	XR_016024	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.85	-	-	-	pseudogene
LOC729828	729828	genome.wustl.edu	36	1	81960068	81960068	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	81960068	81960068	G	A	SNP	LOC729828	XR_015671	human	genbank	54_36p	1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LOC729828	729828	genome.wustl.edu	36	1	81961201	81961201	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	81961201	81961201	T	C	SNP	LOC729828	XR_015671	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MCOLN2	255231	genome.wustl.edu	36	1	85194704	85194704	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	85194704	85194704	A	G	SNP	MCOLN2	NM_153259	human	genbank	54_36p	-1	reviewed	missense	c.563	p.L188P	0.87	NULL	HMMPfam_Ion_trans	-	no_errors
SYDE2	84144	genome.wustl.edu	36	1	85428505	85428505	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	85428505	85428505	A	C	SNP	SYDE2	NM_032184	human	genbank	54_36p	-1	validated	missense	c.1264	p.S422A	0.27	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
C1orf52	148423	genome.wustl.edu	36	1	85497664	85497664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	85497664	85497664	C	G	SNP	C1orf52	NM_198077	human	genbank	54_36p	-1	validated	missense	c.241	p.D81H	1	NULL	NULL	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86106812	86106812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86106812	86106812	C	T	SNP	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	missense	c.3278	p.R1093K	0.92	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86270166	86270173	+	Frame_Shift_Del	DEL	CCGGAGGA	CCGGAGGA	-	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	CCGGAGGA	CCGGAGGA	CCGGAGGA	-	CCGGAGGA	CCGGAGGA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86270166	86270173	CCGGAGGA	-	DEL	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	frame_shift_del	c.2032_2025	p.P676fs	0.994:0.956:0.998:1.000:1.000:1.000:0.999:0.978	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"(deletion:cds_exon[86270149,86270193])"	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86297400	86297400	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86297400	86297400	C	A	SNP	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	missense	c.1798	p.G600C	1	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
CLCA2	9635	genome.wustl.edu	36	1	86672867	86672867	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86672867	86672867	G	T	SNP	CLCA2	NM_006536	human	genbank	54_36p	1	reviewed	missense	c.823	p.A275S	0.74	NULL	"HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973"	-	no_errors
NOC2L	26155	genome.wustl.edu	36	1	871755	871755	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	871755	871755	T	G	SNP	NOC2L	NM_015658	human	genbank	54_36p	-1	validated	missense	c.1693	p.N565H	1	HMMPfam_Noc2	HMMPfam_Noc2	-	no_errors
ENO1	2023	genome.wustl.edu	36	1	8846605	8846605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	8846605	8846605	G	A	SNP	ENO1	NM_001428	human	genbank	54_36p	-1	reviewed	silent	c.999	p.N333	0	"superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C"	"HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like,superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C,PatternScan_ENOLASE"	-	no_errors
ENO1	2023	genome.wustl.edu	36	1	8849058	8849058	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	8849058	8849058	G	A	SNP	ENO1	NM_001428	human	genbank	54_36p	-1	reviewed	silent	c.534	p.F178	1	"HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like"	"HMMPfam_Enolase_C,HMMPfam_Enolase_N,PatternScan_ENOLASE,superfamily_Enolase C-terminal domain-like,superfamily_Enolase N-terminal domain-like"	-	no_errors
GBP1	2633	genome.wustl.edu	36	1	89295139	89295139	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	89295139	89295139	G	A	SNP	GBP1	NM_002053	human	genbank	54_36p	-1	validated	nonsense	c.1141	p.Q381*	1	"HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
GBP2	2634	genome.wustl.edu	36	1	89358540	89358540	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	89358540	89358540	G	A	SNP	GBP2	NM_004120	human	genbank	54_36p	-1	reviewed	missense	c.338	p.S113F	1	"superfamily_SSF52540,HMMPfam_GBP"	"superfamily_SSF52540,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_GBP"	-	no_errors
GBP7	388646	genome.wustl.edu	36	1	89410183	89410183	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	89410183	89410183	T	A	SNP	GBP7	NM_207398	human	genbank	54_36p	-1	validated	silent	c.24	p.P8	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
LRRC8D	55144	genome.wustl.edu	36	1	90172643	90172643	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	90172643	90172643	G	C	SNP	LRRC8D	NM_018103	human	genbank	54_36p	1	validated	silent	c.1428	p.L476	0.86	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
SLC2A5	6518	genome.wustl.edu	36	1	9021500	9021500	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	9021500	9021500	C	T	SNP	SLC2A5	NM_003039	human	genbank	54_36p	-1	validated	missense	c.1072	p.V358M	0.82	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
ZNF326	284695	genome.wustl.edu	36	1	90255585	90255585	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	90255585	90255585	G	T	SNP	ZNF326	NM_182976	human	genbank	54_36p	1	validated	missense	c.1048	p.D350Y	1	HMMPfam_AKAP95	HMMPfam_AKAP95	-	no_errors
BARHL2	343472	genome.wustl.edu	36	1	90950709	90950709	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	90950709	90950709	G	C	SNP	BARHL2	NM_020063	human	genbank	54_36p	-1	validated	nonsense	c.912	p.Y304*	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
LOC646784	646784	genome.wustl.edu	36	1	91262861	91262861	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	91262861	91262861	C	T	SNP	LOC646784	XR_017249	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HFM1	164045	genome.wustl.edu	36	1	91554067	91554067	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	91554067	91554067	T	C	SNP	HFM1	NM_001017975	human	genbank	54_36p	-1	validated	silent	c.3033	p.L1011	0.97	HMMPfam_Sec63	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_Sec63"	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91936263	91936263	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	91936263	91936263	C	G	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	missense	c.2300	p.S767T	0.23	NULL	"HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1"	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91958158	91958158	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	91958158	91958158	G	A	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	silent	c.1293	p.S431	0	NULL	"HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1"	-	no_errors
BRDT	676	genome.wustl.edu	36	1	92214479	92214479	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	92214479	92214479	T	G	SNP	BRDT	NM_001726	human	genbank	54_36p	1	validated	missense	c.514	p.F172V	0	NULL	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
EVI5	7813	genome.wustl.edu	36	1	92751926	92751926	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	92751926	92751926	G	T	SNP	EVI5	NM_005665	human	genbank	54_36p	-1	validated	missense	c.2308	p.P770T	0.96	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
CCDC18	343099	genome.wustl.edu	36	1	93450248	93450248	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	93450248	93450248	T	G	SNP	CCDC18	NM_206886	human	genbank	54_36p	1	validated	missense	c.1691	p.I564S	1	NULL	superfamily_Prefoldin	-	no_errors
BCAR3	8412	genome.wustl.edu	36	1	93827462	93827462	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	93827462	93827462	G	C	SNP	BCAR3	NM_003567	human	genbank	54_36p	-1	reviewed	missense	c.589	p.Q197E	1	"superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2"	"superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147"	-	no_errors
GCLM	2730	genome.wustl.edu	36	1	94134880	94134880	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	94134880	94134880	T	C	SNP	GCLM	NM_002061	human	genbank	54_36p	-1	reviewed	missense	c.422	p.E141G	1	superfamily_NAD(P)-linked oxidoreductase	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	-	no_errors
ABCA4	24	genome.wustl.edu	36	1	94301362	94301362	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	94301362	94301362	C	A	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.1654	p.V552L	0.97	NULL	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA4	24	genome.wustl.edu	36	1	94321512	94321512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	94321512	94321512	G	A	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.842	p.S281L	1	NULL	"HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97787702	97787702	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	97787702	97787702	A	T	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	splice_site	c.1524+2	e12+2	1	-	-	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97787842	97787842	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	97787842	97787842	T	G	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	silent	c.1386	p.P462	1	HMMPfam_Pyr_redox_2	"superfamily_Helical_ferredxn,superfamily_SSF51971,HMMPfam_Pyr_redox_2,superfamily_SSF51395,HMMPfam_DHO_dh,superfamily_SSF54862,HMMPfam_Fer4,PatternScan_4FE4S_FER_1"	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97929868	97929868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	A	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	97929868	97929868	C	A	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	missense	c.755	p.G252V	1	"HMMPfam_Pyr_redox_2,superfamily_SSF51971"	"HMMPfam_Fer4,superfamily_Helical_ferredxn,HMMPfam_DHO_dh,HMMPfam_Pyr_redox_2,PatternScan_4FE4S_FER_1,superfamily_SSF51395,superfamily_SSF51971,superfamily_SSF54862"	-	no_errors
PAP2D	163404	genome.wustl.edu	36	1	99152987	99152987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	99152987	99152987	C	T	SNP	PAP2D	NM_001037317	human	genbank	54_36p	-1	reviewed	missense	c.876	p.M292I	1	NULL	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
LPPR4	9890	genome.wustl.edu	36	1	99544845	99544845	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	99544845	99544845	C	T	SNP	LPPR4	NM_014839	human	genbank	54_36p	1	reviewed	silent	c.1983	p.Y661	0.99	NULL	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
LOXL4	84171	genome.wustl.edu	36	10	100001368	100001368	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	100001368	100001368	A	G	SNP	LOXL4	NM_032211	human	genbank	54_36p	-1	reviewed	missense	c.2033	p.I678T	1	HMMPfam_Lysyl_oxidase	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE"	-	no_errors
ENTPD7	57089	genome.wustl.edu	36	10	101429140	101429140	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	101429140	101429140	C	A	SNP	ENTPD7	NM_020354	human	genbank	54_36p	1	validated	missense	c.324	p.N108K	1	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
CHUK	1147	genome.wustl.edu	36	10	101968473	101968473	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	101968473	101968473	G	A	SNP	CHUK	NM_001278	human	genbank	54_36p	-1	reviewed	silent	c.789	p.S263	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BLOC1S2	282991	genome.wustl.edu	36	10	102035928	102035928	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102035928	102035928	T	C	SNP	BLOC1S2	NM_173809	human	genbank	54_36p	-1	validated	missense	c.88	p.K30E	0.82	HMMPfam_BLOC1_2	HMMPfam_BLOC1_2	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102046741	102046741	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102046741	102046741	G	T	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.1171	p.L391M	1	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102049456	102049456	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102049456	102049456	C	A	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.359	p.G120V	1	NULL	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
C10orf2	56652	genome.wustl.edu	36	10	102738267	102738267	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102738267	102738267	A	T	SNP	C10orf2	NM_021830	human	genbank	54_36p	1	validated	missense	c.310	p.I104F	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LZTS2	84445	genome.wustl.edu	36	10	102753671	102753673	+	In_Frame_Del	DEL	TCC	TCC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TCC	TCC	TCC	-	TCC	TCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102753671	102753673	TCC	-	DEL	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	in_frame_del	c.826_828	p.S279in_frame_del	0.987:0.996:0.980	NULL	HMMPfam_Fez1	"(deletion:cds_exon[102753254,102753913])"	no_errors
SFXN3	81855	genome.wustl.edu	36	10	102786216	102786231	+	Splice_Site	DEL	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	-	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	-	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102786216	102786231	GGCTTTTCCACCCACA	-	DEL	SFXN3	NM_030971	human	genbank	54_36p	1	validated	splice_site_del	c.444-17_444-2	e5-2	0.195:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.066:0.543:0.964:0.983:0.997:1.000	-	-	"(deletion:intron[102785849,102786232])"	no_errors
BTRC	8945	genome.wustl.edu	36	10	103211767	103211767	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	103211767	103211767	C	T	SNP	BTRC	NM_033637	human	genbank	54_36p	1	reviewed	missense	c.196	p.P66S	1	NULL	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
MGEA5	10724	genome.wustl.edu	36	10	103536257	103536257	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	103536257	103536257	C	A	SNP	MGEA5	NM_012215	human	genbank	54_36p	-1	validated	nonsense	c.2692	p.E898*	1	superfamily_Acyl-CoA N-acyltransferases (Nat)	"HMMPfam_NAGidase,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
GBF1	8729	genome.wustl.edu	36	10	104101604	104101604	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	104101604	104101604	G	C	SNP	GBF1	NM_004193	human	genbank	54_36p	1	provisional	silent	c.429	p.L143	1	NULL	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7"	-	no_errors
PSD	5662	genome.wustl.edu	36	10	104166563	104166564	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	104166563	104166564	-	G	INS	PSD	NM_002779	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.223_222	p.S74fs	0.121:0.115	NULL	"HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
TRIM8	81603	genome.wustl.edu	36	10	104407016	104407016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	104407016	104407016	G	C	SNP	TRIM8	NM_030912	human	genbank	54_36p	1	validated	missense	c.1571	p.W524S	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
INA	9118	genome.wustl.edu	36	10	105038213	105038213	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105038213	105038213	A	C	SNP	INA	NM_032727	human	genbank	54_36p	1	validated	missense	c.1297	p.S433R	0.47	NULL	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
TAF5	6877	genome.wustl.edu	36	10	105132993	105132993	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105132993	105132993	C	G	SNP	TAF5	NM_006951	human	genbank	54_36p	1	reviewed	missense	c.1543	p.L515V	1	superfamily_WD40 repeat-like	"HMMPfam_TFIID_90kDa,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CALHM1	255022	genome.wustl.edu	36	10	105208155	105208155	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105208155	105208155	A	C	SNP	CALHM1	NM_001001412	human	genbank	54_36p	-1	validated	missense	c.344	p.V115G	1	NULL	NULL	-	no_errors
C10orf79	80217	genome.wustl.edu	36	10	105917365	105917365	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105917365	105917365	G	C	SNP	C10orf79	ENST00000278064	human	ensembl	54_36p	-1	known	missense	c.2605	p.L869V	0.05	NULL	"superfamily_WD40_like,HMMSmart_WD40"	-	no_errors
C10orf79	80217	genome.wustl.edu	36	10	105942019	105942019	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105942019	105942019	C	T	SNP	C10orf79	NM_025145	human	genbank	54_36p	-1	predicted	missense	c.1474	p.G492R	0.45	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
CCDC147	159686	genome.wustl.edu	36	10	106108143	106108143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	106108143	106108143	G	C	SNP	CCDC147	NM_001008723	human	genbank	54_36p	1	validated	missense	c.64	p.D22H	1	NULL	NULL	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	106972958	106972958	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	106972958	106972958	G	T	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.2829	p.G943	0.99	superfamily_PKD	"superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD"	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	107012229	107012229	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	107012229	107012229	G	A	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.3594	p.T1198	0.88	NULL	"HMMPfam_PKD,superfamily_PKD,HMMSmart_VPS10,superfamily_SSF110296"	-	no_errors
XPNPEP1	7511	genome.wustl.edu	36	10	111618436	111618436	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111618436	111618436	G	A	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	silent	c.1669	p.L557	1	"superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24"	"HMMPfam_Creatinase_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE"	-	no_errors
XPNPEP1	7511	genome.wustl.edu	36	10	111620629	111620629	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111620629	111620629	G	C	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	missense	c.1417	p.R473G	1	"HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase"	"HMMPfam_Creatinase_N,HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,PatternScan_PROLINE_PEPTIDASE"	-	no_errors
ADD3	120	genome.wustl.edu	36	10	111882060	111882060	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111882060	111882060	G	C	SNP	ADD3	NM_016824	human	genbank	54_36p	1	reviewed	missense	c.1740	p.E580D	1	NULL	"superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II"	-	no_errors
VTI1A	143187	genome.wustl.edu	36	10	114565097	114565097	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	114565097	114565097	C	G	SNP	VTI1A	NM_145206	human	genbank	54_36p	1	validated	missense	c.619	p.L207V	1	NULL	"HMMPfam_V-SNARE,HMMSmart_t_SNARE"	-	no_errors
TCF7L2	6934	genome.wustl.edu	36	10	114839151	114839151	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	114839151	114839151	C	G	SNP	TCF7L2	ENST00000352065	human	ensembl	54_36p	1	known	missense	c.489	p.S163R	1	HMMPfam_CTNNB1_binding	"HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
HABP2	3026	genome.wustl.edu	36	10	115328441	115328441	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115328441	115328441	C	T	SNP	HABP2	NM_004132	human	genbank	54_36p	1	reviewed	nonsense	c.634	p.Q212*	0.25	"superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle"	###############################################################################################################################################################################################################################################################	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115358206	115358206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115358206	115358206	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.3659	p.P1220H	1	"HMMSmart_SM00227,HMMPfam_Nebulin"	"HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin"	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115390036	115390036	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115390036	115390036	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.1368	p.N456K	1	NULL	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115402747	115402747	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115402747	115402747	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.507	p.S169R	1	NULL	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
NHLRC2	374354	genome.wustl.edu	36	10	115658198	115658198	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115658198	115658198	G	A	SNP	NHLRC2	NM_198514	human	genbank	54_36p	1	provisional	missense	c.2094	p.M698I	1	NULL	"superfamily_Thioredoxin-like,superfamily_NHL repeat,HMMPfam_NHL"	-	no_errors
AFAP1L2	84632	genome.wustl.edu	36	10	116050271	116050271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	116050271	116050271	C	T	SNP	AFAP1L2	NM_001001936	human	genbank	54_36p	-1	validated	missense	c.1711	p.A571T	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
ABLIM1	3983	genome.wustl.edu	36	10	116407732	116407732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	116407732	116407732	C	T	SNP	ABLIM1	NM_002313	human	genbank	54_36p	-1	reviewed	missense	c.218	p.R73H	0	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	116879136	116879136	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	116879136	116879136	T	C	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	silent	c.678	p.S226	0.1	"superfamily_EGF/Laminin,HMMSmart_SM00181"	###############################################################################################################################################################################################################################################################	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	117144159	117144159	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	117144159	117144159	C	G	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	missense	c.3176	p.A1059G	1	"PatternScan_EGF_LAM_1,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
GFRA1	2674	genome.wustl.edu	36	10	117874815	117874815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	117874815	117874815	C	A	SNP	GFRA1	NM_005264	human	genbank	54_36p	-1	reviewed	missense	c.677	p.R226L	1	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	-	no_errors
C10orf96	374355	genome.wustl.edu	36	10	118106897	118106897	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118106897	118106897	A	G	SNP	C10orf96	NM_198515	human	genbank	54_36p	1	validated	missense	c.464	p.E155G	1	NULL	NULL	-	no_errors
PNLIPRP3	119548	genome.wustl.edu	36	10	118226224	118226224	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118226224	118226224	A	T	SNP	PNLIPRP3	NM_001011709	human	genbank	54_36p	1	validated	missense	c.1243	p.S415C	0.74	"superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,PatternScan_HMG_COA_REDUCTASE_1"	-	no_errors
PNLIP	5406	genome.wustl.edu	36	10	118308707	118308707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118308707	118308707	G	A	SNP	PNLIP	NM_000936	human	genbank	54_36p	1	reviewed	missense	c.982	p.A328T	1	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
PNLIPRP1	5407	genome.wustl.edu	36	10	118345822	118345822	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118345822	118345822	C	A	SNP	PNLIPRP1	NM_006229	human	genbank	54_36p	1	provisional	missense	c.572	p.T191K	1	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
VAX1	11023	genome.wustl.edu	36	10	118881738	118881738	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118881738	118881738	G	T	SNP	VAX1	NM_199131	human	genbank	54_36p	-1	reviewed	missense	c.533	p.S178Y	0	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
VAX1	11023	genome.wustl.edu	36	10	118885982	118885982	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118885982	118885982	G	A	SNP	VAX1	NM_199131	human	genbank	54_36p	-1	reviewed	silent	c.420	p.S140	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	-	no_errors
C10orf84	63877	genome.wustl.edu	36	10	120075697	120075697	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	120075697	120075697	C	A	SNP	C10orf84	NM_022063	human	genbank	54_36p	-1	validated	nonsense	c.502	p.E168*	1	NULL	NULL	-	no_errors
LOC729666	729666	genome.wustl.edu	36	10	120682652	120682652	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	120682652	120682652	T	A	SNP	LOC729666	XR_015620	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GRK5	2869	genome.wustl.edu	36	10	121083300	121083300	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121083300	121083300	C	G	SNP	GRK5	ENST00000369106	human	ensembl	54_36p	1	known	missense	c.180	p.S60R	0	NULL	NULL	-	no_errors
BAG3	9531	genome.wustl.edu	36	10	121422103	121422103	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121422103	121422103	C	T	SNP	BAG3	NM_004281	human	genbank	54_36p	1	reviewed	missense	c.854	p.T285M	0.75	NULL	"superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG"	-	no_errors
BAG3	9531	genome.wustl.edu	36	10	121426356	121426356	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121426356	121426356	G	A	SNP	BAG3	NM_004281	human	genbank	54_36p	1	reviewed	missense	c.1300	p.G434R	0.31	"HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491"	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491"	-	no_errors
INPP5F	22876	genome.wustl.edu	36	10	121577046	121577046	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121577046	121577046	G	T	SNP	INPP5F	NM_014937	human	genbank	54_36p	1	reviewed	missense	c.3163	p.V1055L	0.03	NULL	HMMPfam_Syja_N	-	no_errors
C10orf119	79892	genome.wustl.edu	36	10	121609371	121609371	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121609371	121609371	T	A	SNP	C10orf119	NM_024834	human	genbank	54_36p	-1	validated	missense	c.74	p.N25I	0.98	NULL	HMMPfam_DUF2044	-	no_errors
SEC23IP	11196	genome.wustl.edu	36	10	121667951	121667951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121667951	121667951	T	G	SNP	SEC23IP	NM_007190	human	genbank	54_36p	1	reviewed	missense	c.1810	p.C604G	0.06	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_DDHD"	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123832305	123832305	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	123832305	123832305	G	A	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	silent	c.300	p.P100	0	NULL	HMMPfam_TACC	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123833228	123833228	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	123833228	123833228	C	T	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.1223	p.S408F	0	NULL	HMMPfam_TACC	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123837268	123837268	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	123837268	123837268	G	T	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.5263	p.A1755S	0	NULL	HMMPfam_TACC	-	no_errors
DMBT1	1755	genome.wustl.edu	36	10	124380761	124380761	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124380761	124380761	G	A	SNP	DMBT1	NM_007329	human	genbank	54_36p	1	reviewed	missense	c.5933	p.R1978H	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
LOC729794	729794	genome.wustl.edu	36	10	124479050	124479050	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124479050	124479050	G	A	SNP	LOC729794	XM_001718748	human	genbank	54_36p	1	model	silent	c.279	p.V93	0.02	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
FAM24A	118670	genome.wustl.edu	36	10	124662386	124662386	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124662386	124662386	T	C	SNP	FAM24A	NM_001029888	human	genbank	54_36p	1	inferred	missense	c.244	p.C82R	0.12	NULL	NULL	-	no_errors
ACADSB	36	genome.wustl.edu	36	10	124792672	124792672	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124792672	124792672	G	A	SNP	ACADSB	NM_001609	human	genbank	54_36p	1	reviewed	missense	c.802	p.V268I	1	superfamily_Acyl-CoA dehydrogenase NM domain-like	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_Acyl-CoA_dh_1,PatternScan_ACYL_COA_DH_2"	-	no_errors
CPXM2	119587	genome.wustl.edu	36	10	125496310	125496310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	125496310	125496310	C	T	SNP	CPXM2	NM_198148	human	genbank	54_36p	-1	validated	missense	c.2231	p.R744Q	0.95	superfamily_Carboxypeptidase regulatory domain	###############################################################################################################################################################################################################################################################	-	no_errors
C10orf137	26098	genome.wustl.edu	36	10	127399835	127399835	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127399835	127399835	C	G	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.181	p.R61G	0.99	NULL	NULL	-	no_errors
MMP21	118856	genome.wustl.edu	36	10	127445243	127445243	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127445243	127445243	T	C	SNP	MMP21	NM_147191	human	genbank	54_36p	-1	reviewed	missense	c.1688	p.H563R	0.99	NULL	"superfamily_PGBD-like,HMMPfam_PG_binding_1,HMMSmart_SM00235,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	-	no_errors
DHX32	55760	genome.wustl.edu	36	10	127516947	127516947	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127516947	127516947	C	G	SNP	DHX32	NM_018180	human	genbank	54_36p	-1	reviewed	splice_site	c.1882-1	e10-1	1	-	-	-	no_errors
ADAM12	8038	genome.wustl.edu	36	10	127833840	127833840	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127833840	127833840	C	T	SNP	ADAM12	NM_003474	human	genbank	54_36p	-1	reviewed	silent	c.285	p.T95	0.92	HMMPfam_Pep_M12B_propep	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM12	8038	genome.wustl.edu	36	10	128009048	128009048	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	128009048	128009048	C	T	SNP	ADAM12	NM_003474	human	genbank	54_36p	-1	reviewed	missense	c.109	p.G37R	0	HMMPfam_Pep_M12B_propep	###############################################################################################################################################################################################################################################################	-	no_errors
C10orf90	118611	genome.wustl.edu	36	10	128104618	128104619	+	Nonsense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	TC	TC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	128104618	128104619	TC	AA	DNP	C10orf90	NM_001004298	human	genbank	54_36p	-1	validated	nonsense	c.1993_1992	p.KKK664N*	1.000:1.000	NULL	NULL	-	no_errors
CAMK1D	57118	genome.wustl.edu	36	10	12898306	12898306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	12898306	12898306	C	T	SNP	CAMK1D	NM_153498	human	genbank	54_36p	1	reviewed	missense	c.806	p.T269M	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DOCK1	1793	genome.wustl.edu	36	10	129062457	129062457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	129062457	129062457	G	A	SNP	DOCK1	ENST00000398025	human	ensembl	54_36p	1	known	missense	c.3799	p.V1267I	1	NULL	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Cytochrome_c"	-	no_errors
MKI67	4288	genome.wustl.edu	36	10	129791228	129791228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	129791228	129791228	G	C	SNP	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	missense	c.8866	p.L2956V	0.05	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R"	-	no_errors
MKI67	4288	genome.wustl.edu	36	10	129795130	129795130	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	129795130	129795130	G	A	SNP	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	missense	c.4964	p.T1655I	0	HMMPfam_K167R	"HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R"	-	no_errors
CCDC3	83643	genome.wustl.edu	36	10	12980651	12980651	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	12980651	12980651	T	A	SNP	CCDC3	NM_031455	human	genbank	54_36p	-1	validated	missense	c.584	p.E195V	1	NULL	NULL	-	no_errors
TCERG1L	256536	genome.wustl.edu	36	10	132822665	132822665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	132822665	132822665	C	G	SNP	TCERG1L	NM_174937	human	genbank	54_36p	-1	validated	missense	c.1226	p.R409T	0	NULL	"PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,superfamily_FF,HMMSmart_FF,HMMPfam_FF"	-	no_errors
SYCE1	93426	genome.wustl.edu	36	10	135219322	135219322	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	135219322	135219322	G	T	SNP	SYCE1	NM_130784	human	genbank	54_36p	-1	validated	missense	c.563	p.T188N	0	NULL	NULL	-	no_errors
DCLRE1C	64421	genome.wustl.edu	36	10	15016413	15016413	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15016413	15016413	G	T	SNP	DCLRE1C	NM_001033855	human	genbank	54_36p	-1	reviewed	missense	c.650	p.T217N	1	NULL	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_DRMBL"	-	no_errors
MEIG1	644890	genome.wustl.edu	36	10	15048569	15048569	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	15048569	15048569	T	A	SNP	MEIG1	NM_001080836	human	genbank	54_36p	1	validated	nonsense	c.96	p.Y32*	1	NULL	NULL	-	no_errors
NMT2	9397	genome.wustl.edu	36	10	15201474	15201474	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15201474	15201474	G	C	SNP	NMT2	NM_004808	human	genbank	54_36p	-1	reviewed	missense	c.1044	p.I348M	1	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_NMT_C"	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_NMT,PatternScan_NMT_1,HMMPfam_NMT_C,PatternScan_NMT_2"	-	no_errors
FAM171A1	221061	genome.wustl.edu	36	10	15296371	15296371	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15296371	15296371	C	A	SNP	FAM171A1	NM_001010924	human	genbank	54_36p	-1	validated	missense	c.1222	p.G408W	0.71	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
ITGA8	8516	genome.wustl.edu	36	10	15640161	15640161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15640161	15640161	C	T	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	missense	c.2684	p.R895Q	0.64	"HMMPfam_Integrin_alpha2,superfamily_SSF69179"	"superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ITGA8	8516	genome.wustl.edu	36	10	15766093	15766093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15766093	15766093	T	C	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	missense	c.484	p.T162A	0	superfamily_SSF69318	"HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF69179,superfamily_SSF69318"	-	no_errors
PTER	9317	genome.wustl.edu	36	10	16566430	16566430	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	16566430	16566430	T	C	SNP	PTER	NM_001001484	human	genbank	54_36p	1	validated	missense	c.41	p.L14P	0.01	superfamily_Metallo-dependent hydrolases	"superfamily_Metallo-dependent hydrolases,HMMPfam_PTE,PatternScan_PHOSPHOTRIESTERASE_1"	-	no_errors
PTER	9317	genome.wustl.edu	36	10	16568623	16568623	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	16568623	16568623	G	C	SNP	PTER	NM_001001484	human	genbank	54_36p	1	validated	splice_site	c.698+1	e2+1	1	-	-	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17020969	17020969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17020969	17020969	C	G	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.5732	p.R1911T	1	"HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_CUB"	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17022062	17022062	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17022062	17022062	C	A	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	silent	c.5523	p.T1841	0	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17125901	17125901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17125901	17125901	T	A	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.3760	p.S1254C	0.94	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
ST8SIA6	338596	genome.wustl.edu	36	10	17403280	17403280	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17403280	17403280	A	C	SNP	ST8SIA6	NM_001004470	human	genbank	54_36p	-1	validated	missense	c.800	p.L267R	0.14	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
STAM	8027	genome.wustl.edu	36	10	17770087	17770087	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17770087	17770087	A	G	SNP	STAM	NM_003473	human	genbank	54_36p	1	reviewed	missense	c.353	p.E118G	1	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288"	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,HMMPfam_UIM,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
CACNB2	783	genome.wustl.edu	36	10	18827469	18827469	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	18827469	18827469	T	A	SNP	CACNB2	ENST00000402317	human	ensembl	54_36p	1	known	missense	c.351	p.F117L	0	NULL	superfamily_SH3-domain	-	no_errors
NSUN6	221078	genome.wustl.edu	36	10	18980066	18980066	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	18980066	18980066	C	A	SNP	NSUN6	NM_182543	human	genbank	54_36p	-1	validated	nonsense	c.73	p.E25*	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_PUA domain-like,HMMPfam_PUA,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN"	-	no_errors
C10orf113	387638	genome.wustl.edu	36	10	21454980	21454980	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	21454980	21454980	T	A	SNP	C10orf113	NM_001010896	human	genbank	54_36p	-1	predicted	missense	c.216	p.Q72H	0.78	NULL	NULL	-	no_errors
C10orf140	387640	genome.wustl.edu	36	10	21844172	21844172	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	21844172	21844172	C	A	SNP	C10orf140	NM_207371	human	genbank	54_36p	-1	validated	silent	c.2586	p.G862	1	NULL	"superfamily_Putative DNA-binding domain,HMMPfam_Ski_Sno,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PIP4K2A	5305	genome.wustl.edu	36	10	22866155	22866155	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	10	22866155	22866155	A	T	SNP	PIP4K2A	NM_005028	human	genbank	54_36p	-1	reviewed	missense	c.1202	p.I401N	1	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24802216	24802216	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24802216	24802216	C	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	silent	c.900	p.P300	0.23	NULL	NULL	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24802221	24802221	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24802221	24802221	C	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	missense	c.905	p.S302F	0.89	NULL	NULL	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24914568	24914568	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24914568	24914568	C	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	silent	c.4653	p.T1551	0.55	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24926891	24926891	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24926891	24926891	G	C	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.3183	p.N1061K	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24948443	24948443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24948443	24948443	G	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.2384	p.P795Q	0.89	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25926869	25926869	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	25926869	25926869	T	C	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	missense	c.2308	p.S770P	1	NULL	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_7tm_3"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25927612	25927612	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	25927612	25927612	T	C	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	silent	c.3051	p.G1017	0.9	NULL	"HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25927883	25927883	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	25927883	25927883	C	T	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	missense	c.3322	p.R1108C	0	NULL	"HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
MYO3A	53904	genome.wustl.edu	36	10	26503059	26503059	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	26503059	26503059	C	A	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.3860	p.P1287H	0.13	superfamily_SSF52540	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
MYO3A	53904	genome.wustl.edu	36	10	26503397	26503397	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	26503397	26503397	C	T	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.4198	p.H1400Y	0	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540"	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27579509	27579509	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	27579509	27579509	G	A	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0	-	-	-	pseudogene
PTCHD3	374308	genome.wustl.edu	36	10	27727657	27727657	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	27727657	27727657	C	G	SNP	PTCHD3	NM_001034842	human	genbank	54_36p	-1	validated	missense	c.1876	p.G626R	0.99	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
ARMC4	55130	genome.wustl.edu	36	10	28268882	28268882	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	28268882	28268882	T	A	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	missense	c.2047	p.N683Y	0.77	"superfamily_ARM repeat,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
MPP7	143098	genome.wustl.edu	36	10	28448650	28448650	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	28448650	28448650	C	G	SNP	MPP7	NM_173496	human	genbank	54_36p	-1	validated	missense	c.888	p.R296S	1	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	"HMMSmart_L27,HMMPfam_L27,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF52540,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin"	-	no_errors
WAC	51322	genome.wustl.edu	36	10	28940858	28940858	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	28940858	28940858	G	T	SNP	WAC	NM_016628	human	genbank	54_36p	1	reviewed	splice_site	c.1437+1	e10+1	1	-	-	-	no_errors
LOC653665	653665	genome.wustl.edu	36	10	29228313	29228313	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29228313	29228313	T	C	SNP	LOC653665	XM_001723025	human	genbank	54_36p	-1	model	missense	c.68	p.K23R	1	"HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain"	"HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain,PatternScan_RIBOSOMAL_L21E"	-	pseudogene
SVIL	6840	genome.wustl.edu	36	10	29799398	29799398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29799398	29799398	C	T	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.5656	p.V1886M	1	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262"	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
SVIL	6840	genome.wustl.edu	36	10	29813712	29813712	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29813712	29813712	T	A	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.4834	p.T1612S	1	"HMMSmart_SM00262,superfamily_Actin depolymerizing proteins"	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
SVIL	6840	genome.wustl.edu	36	10	29817606	29817606	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29817606	29817606	G	C	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	silent	c.4278	p.V1426	1	NULL	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30355780	30355780	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30355780	30355780	C	T	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	silent	c.3303	p.P1101	0	NULL	NULL	-	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30357215	30357216	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30357215	30357216	CT	-	DEL	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	frame_shift_del	c.1868_1867	p.L624fs	1.000:1.000	NULL	NULL	"(deletion:cds_exon[30355038,30358801])"	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30357354	30357354	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30357354	30357354	C	A	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	nonsense	c.1729	p.E577*	1	NULL	NULL	-	no_errors
MTPAP	55149	genome.wustl.edu	36	10	30669248	30669248	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30669248	30669248	C	T	SNP	MTPAP	NM_018109	human	genbank	54_36p	-1	validated	silent	c.468	p.Q156	0	NULL	"superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc"	-	no_errors
LOC645954	645954	genome.wustl.edu	36	10	31014301	31014301	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	31014301	31014301	C	T	SNP	LOC645954	XR_017086	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	no_errors
PITRM1	10531	genome.wustl.edu	36	10	3198518	3198518	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	3198518	3198518	C	T	SNP	PITRM1	NM_014889	human	genbank	54_36p	-1	validated	silent	c.321	p.E107	1	superfamily_LuxS/MPP-like metallohydrolase	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16_C,HMMPfam_M16C_assoc"	-	no_errors
KIF5B	3799	genome.wustl.edu	36	10	32369383	32369383	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	32369383	32369383	C	T	SNP	KIF5B	NM_004521	human	genbank	54_36p	-1	validated	missense	c.223	p.E75K	1	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin"	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
EPC1	80314	genome.wustl.edu	36	10	32621530	32621530	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	32621530	32621530	G	T	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	silent	c.715	p.R239	1	NULL	"HMMPfam_EPL1,HMMPfam_E_Pc_C"	-	no_errors
C10orf68	79741	genome.wustl.edu	36	10	33040622	33040622	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	33040622	33040622	C	T	SNP	C10orf68	NM_024688	human	genbank	54_36p	1	validated	nonsense	c.448	p.Q150*	0.01	NULL	NULL	-	no_errors
NRP1	8829	genome.wustl.edu	36	10	33550667	33550667	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	33550667	33550667	C	G	SNP	NRP1	NM_003873	human	genbank	54_36p	-1	validated	missense	c.1268	p.G423A	1	"superfamily_Galactose-binding domain-like,HMMSmart_SM00231,PatternScan_FA58C_2"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1"	-	no_errors
PARD3	56288	genome.wustl.edu	36	10	34660243	34660254	+	In_Frame_Del	DEL	GACCCAGGGAAG	GACCCAGGGAAG	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	GACCCAGGGAAG	GACCCAGGGAAG	GACCCAGGGAAG	-	GACCCAGGGAAG	GACCCAGGGAAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	34660243	34660254	GACCCAGGGAAG	-	DEL	PARD3	NM_019619	human	genbank	54_36p	-1	provisional	in_frame_del	c.2650_2639	p.PSLG880in_frame_del	0.997:0.994:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.885:1.000	NULL	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	"(deletion:cds_exon[34660051,34660278])"	no_errors
CUL2	8453	genome.wustl.edu	36	10	35368017	35368017	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	35368017	35368017	C	T	SNP	CUL2	NM_003591	human	genbank	54_36p	-1	provisional	splice_site	c.715-1	e8-1	1	-	-	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37470809	37470809	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	37470809	37470809	T	G	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.810	p.D270E	0.03	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE"	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37526222	37526222	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	37526222	37526222	C	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	silent	c.2454	p.P818	0.02	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37546763	37546763	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	37546763	37546763	T	G	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.3050	p.L1017R	0.02	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ZNF248	57209	genome.wustl.edu	36	10	38166609	38166609	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	38166609	38166609	G	A	SNP	ZNF248	NM_021045	human	genbank	54_36p	-1	provisional	silent	c.180	p.I60	0.86	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CCNYL2	414194	genome.wustl.edu	36	10	42285601	42285601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42285601	42285601	A	G	SNP	CCNYL2	XM_374787	human	genbank	54_36p	-1	model	missense	c.350	p.V117A	0.83	NULL	"HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Cyclin_N"	-	no_errors
BMS1	9790	genome.wustl.edu	36	10	42609420	42609420	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42609420	42609420	G	T	SNP	BMS1	NM_014753	human	genbank	54_36p	1	reviewed	missense	c.1204	p.G402W	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AARP2CN,HMMSmart_SM00785,HMMPfam_DUF663"	-	no_errors
BMS1	9790	genome.wustl.edu	36	10	42645856	42645856	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42645856	42645856	C	G	SNP	BMS1	NM_014753	human	genbank	54_36p	1	reviewed	missense	c.3598	p.R1200G	0.95	NULL	"HMMPfam_DUF663,HMMPfam_AARP2CN,HMMSmart_SM00785,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LOC399748	399748	genome.wustl.edu	36	10	43421077	43421077	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	43421077	43421077	C	A	SNP	LOC399748	XR_016318	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.93	-	-	-	pseudogene
ZNF32	7580	genome.wustl.edu	36	10	43460106	43460106	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	43460106	43460106	G	T	SNP	ZNF32	NM_001005368	human	genbank	54_36p	-1	validated	missense	c.220	p.Q74K	1	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RASSF4	83937	genome.wustl.edu	36	10	44787207	44787207	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	44787207	44787207	G	A	SNP	RASSF4	ENST00000374411	human	ensembl	54_36p	1	known	missense	c.316	p.V106M	0.03	NULL	"HMMSmart_SM00314,HMMPfam_RA"	-	no_start_codon
AGAP4	119016	genome.wustl.edu	36	10	45641482	45641482	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	45641482	45641482	C	T	SNP	AGAP4	NM_133446	human	genbank	54_36p	-1	provisional	missense	c.1879	p.V627I	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
DIP2C	22982	genome.wustl.edu	36	10	458810	458810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	458810	458810	G	A	SNP	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	silent	c.558	p.S186	1	NULL	"PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding"	-	no_errors
FAM21B	55747	genome.wustl.edu	36	10	47431114	47431114	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	47431114	47431114	G	C	SNP	FAM21B	NM_018232	human	genbank	54_36p	1	validated	missense	c.976	p.G326R	0.98	NULL	NULL	-	no_errors
ZNF488	118738	genome.wustl.edu	36	10	47991112	47991112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	47991112	47991112	C	A	SNP	ZNF488	NM_153034	human	genbank	54_36p	1	provisional	missense	c.574	p.L192M	0.92	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
GDF2	2658	genome.wustl.edu	36	10	48033912	48033912	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	48033912	48033912	G	C	SNP	GDF2	NM_016204	human	genbank	54_36p	-1	reviewed	missense	c.962	p.A321G	0.04	superfamily_Cystine-knot cytokines	"HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1"	-	no_errors
GDF2	2658	genome.wustl.edu	36	10	48036475	48036475	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	48036475	48036475	G	C	SNP	GDF2	NM_016204	human	genbank	54_36p	-1	reviewed	silent	c.225	p.V75	0.97	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines"	-	no_errors
AKR1C1	1645	genome.wustl.edu	36	10	5004864	5004864	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	5004864	5004864	C	T	SNP	AKR1C1	NM_001353	human	genbank	54_36p	1	reviewed	silent	c.769	p.L257	1	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
ERCC6	2074	genome.wustl.edu	36	10	50378606	50378606	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50378606	50378606	G	C	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	missense	c.1669	p.R557G	1	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
ERCC6	2074	genome.wustl.edu	36	10	50378705	50378705	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50378705	50378705	G	A	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	nonsense	c.1570	p.Q524*	1	"HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540"	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540"	-	no_errors
PARG	8505	genome.wustl.edu	36	10	50739698	50739698	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50739698	50739698	G	A	SNP	PARG	ENST00000402038	human	ensembl	54_36p	-1	known	missense	c.2147	p.T716I	0.75	HMMPfam_PARG_cat	HMMPfam_PARG_cat	-	no_errors
PARG	8505	genome.wustl.edu	36	10	50757751	50757751	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50757751	50757751	A	G	SNP	PARG	ENST00000402038	human	ensembl	54_36p	-1	known	silent	c.1962	p.S654	1	HMMPfam_PARG_cat	HMMPfam_PARG_cat	-	no_errors
AGAP7	653268	genome.wustl.edu	36	10	51134838	51134838	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	51134838	51134838	G	A	SNP	AGAP7	NM_001077685	human	genbank	54_36p	-1	provisional	missense	c.1624	p.R542W	1	"superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
MSMB	4477	genome.wustl.edu	36	10	51232387	51232387	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	51232387	51232387	T	A	SNP	MSMB	NM_002443	human	genbank	54_36p	1	reviewed	missense	c.326	p.V109D	0	HMMPfam_PSP94	HMMPfam_PSP94	-	no_errors
MSMB	4477	genome.wustl.edu	36	10	51232394	51232394	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	51232394	51232394	A	G	SNP	MSMB	NM_138634	human	genbank	54_36p	1	reviewed	missense	c.227	p.N76S	0	NULL	HMMPfam_PSP94	-	no_errors
LOC729023	729023	genome.wustl.edu	36	10	52114870	52114870	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	52114870	52114870	A	T	SNP	LOC729023	XR_038278	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
MBL2	4153	genome.wustl.edu	36	10	54201258	54201258	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	54201258	54201258	G	T	SNP	MBL2	NM_000242	human	genbank	54_36p	-1	reviewed	silent	c.144	p.G48	1	NULL	"HMMPfam_Collagen,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55238564	55238564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	55238564	55238564	G	A	SNP	PCDH15	ENST00000395445	human	ensembl	54_36p	-1	known	missense	c.5252	p.S1751F	0	NULL	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55286974	55286974	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	55286974	55286974	G	T	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	missense	c.3773	p.T1258N	0.98	NULL	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55625469	55625469	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	55625469	55625469	G	A	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	silent	c.1285	p.L429	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
IPMK	253430	genome.wustl.edu	36	10	59656818	59656818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	59656818	59656818	G	A	SNP	IPMK	NM_152230	human	genbank	54_36p	-1	provisional	missense	c.365	p.A122V	1	"superfamily_SSF56104,HMMPfam_IPK"	"superfamily_SSF56104,HMMPfam_IPK"	-	no_errors
FBXO18	84893	genome.wustl.edu	36	10	5998369	5998369	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	5998369	5998369	A	T	SNP	FBXO18	NM_032807	human	genbank	54_36p	1	reviewed	missense	c.1885	p.I629F	0.99	superfamily_SSF52540	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540"	-	no_errors
BICC1	80114	genome.wustl.edu	36	10	60219104	60219104	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	60219104	60219104	C	A	SNP	BICC1	NM_001080512	human	genbank	54_36p	1	provisional	missense	c.677	p.P226H	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain"	-	no_errors
BICC1	80114	genome.wustl.edu	36	10	60230718	60230719	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	60230718	60230719	GG	TT	DNP	BICC1	NM_001080512	human	genbank	54_36p	1	provisional	missense	c.1921_1922	p.G641F	0.997:0.984	NULL	"HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00322,superfamily_SAM/Pointed domain,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
SLC16A9	220963	genome.wustl.edu	36	10	61083893	61083893	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	61083893	61083893	A	G	SNP	SLC16A9	NM_194298	human	genbank	54_36p	-1	validated	silent	c.897	p.A299	0.25	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61501621	61501621	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	61501621	61501621	G	C	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.9024	p.H3008Q	0.14	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61637909	61637909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	61637909	61637909	T	C	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.1085	p.D362G	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like"	-	no_errors
PFKFB3	5209	genome.wustl.edu	36	10	6301630	6301630	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	6301630	6301630	C	G	SNP	PFKFB3	NM_004566	human	genbank	54_36p	1	validated	missense	c.591	p.S197R	1	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like,PatternScan_PG_MUTASE"	-	no_errors
ARID5B	84159	genome.wustl.edu	36	10	63486945	63486945	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	63486945	63486945	T	G	SNP	ARID5B	NM_032199	human	genbank	54_36p	1	validated	missense	c.910	p.S304A	0.98	superfamily_ARID-like	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
LRRTM3	347731	genome.wustl.edu	36	10	68527509	68527509	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	68527509	68527509	C	A	SNP	LRRTM3	NM_178011	human	genbank	54_36p	1	validated	missense	c.1695	p.S565R	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
CTNNA3	29119	genome.wustl.edu	36	10	68610279	68610279	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	68610279	68610279	T	C	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	silent	c.849	p.L283	1	HMMPfam_Vinculin	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	-	no_errors
DNA2	1763	genome.wustl.edu	36	10	69852350	69852350	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	69852350	69852350	T	A	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	missense	c.2678	p.E893V	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70076113	70076113	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70076113	70076113	T	G	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	silent	c.3621	p.P1207	0	NULL	HMMPfam_zf-CXXC	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70076261	70076261	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70076261	70076261	G	T	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	missense	c.3769	p.V1257F	0.88	NULL	HMMPfam_zf-CXXC	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70116184	70116184	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70116184	70116184	T	A	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	missense	c.5118	p.H1706Q	0.99	NULL	HMMPfam_zf-CXXC	-	no_errors
CCAR1	55749	genome.wustl.edu	36	10	70166669	70166669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70166669	70166669	T	C	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.104	p.L35P	1	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand"	-	no_errors
CCAR1	55749	genome.wustl.edu	36	10	70177005	70177005	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70177005	70177005	G	C	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.600	p.W200C	1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand,superfamily_SAP domain"	-	no_errors
DDX50	79009	genome.wustl.edu	36	10	70365827	70365827	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70365827	70365827	C	T	SNP	DDX50	NM_024045	human	genbank	54_36p	1	reviewed	silent	c.1581	p.S527	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT"	-	no_errors
DDX21	9188	genome.wustl.edu	36	10	70391886	70391886	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70391886	70391886	C	A	SNP	DDX21	NM_004728	human	genbank	54_36p	1	reviewed	missense	c.574	p.P192T	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT"	-	no_errors
KIAA1279	26128	genome.wustl.edu	36	10	70446172	70446172	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70446172	70446172	G	A	SNP	KIAA1279	NM_015634	human	genbank	54_36p	1	validated	silent	c.1860	p.L620	0.97	NULL	superfamily_SSF48452	-	no_errors
HKDC1	80201	genome.wustl.edu	36	10	70680337	70680337	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70680337	70680337	T	G	SNP	HKDC1	NM_025130	human	genbank	54_36p	1	validated	missense	c.1759	p.Y587D	1	"superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_1"	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	-	no_errors
C10orf35	219738	genome.wustl.edu	36	10	71062718	71062718	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71062718	71062718	C	A	SNP	C10orf35	NM_145306	human	genbank	54_36p	1	validated	missense	c.263	p.P88Q	1	NULL	NULL	-	no_errors
COL13A1	1305	genome.wustl.edu	36	10	71348079	71348079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71348079	71348079	G	A	SNP	COL13A1	NM_005203	human	genbank	54_36p	1	reviewed	silent	c.1029	p.K343	1	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71961158	71961158	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71961158	71961158	T	A	SNP	KIAA1274	NM_014431	human	genbank	54_36p	1	validated	missense	c.575	p.L192H	1	NULL	superfamily_SSF52799	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71968077	71968077	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71968077	71968077	G	T	SNP	KIAA1274	NM_014431	human	genbank	54_36p	1	validated	missense	c.1359	p.W453C	1	NULL	superfamily_SSF52799	-	no_errors
ADAMTS14	140766	genome.wustl.edu	36	10	72162034	72162034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	72162034	72162034	G	A	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.1130	p.G377D	1	"superfamily_SSF55486,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS14	140766	genome.wustl.edu	36	10	72173420	72173420	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	72173420	72173420	G	A	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.2044	p.V682I	0.97	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_SSF55486"	-	no_errors
LOC338611	338611	genome.wustl.edu	36	10	72224212	72224212	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	72224212	72224212	C	T	SNP	LOC338611	XM_001130386	human	genbank	54_36p	-1	model	missense	c.74	p.C25Y	1	HMMPfam_Ribosomal_S26e	"HMMPfam_Ribosomal_S26e,PatternScan_RIBOSOMAL_S26E"	-	pseudogene
SFMBT2	57713	genome.wustl.edu	36	10	7245767	7245767	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	7245767	7245767	C	A	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	missense	c.2656	p.V886L	1	"HMMSmart_SM00454,HMMPfam_SAM_2"	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
SFMBT2	57713	genome.wustl.edu	36	10	7279543	7279543	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	7279543	7279543	C	G	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	silent	c.1671	p.P557	0.82	NULL	"HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_Tudor/PWWP/MBT"	-	no_errors
C10orf54	64115	genome.wustl.edu	36	10	73190679	73190679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	73190679	73190679	C	G	SNP	C10orf54	NM_022153	human	genbank	54_36p	-1	validated	missense	c.520	p.A174P	0.01	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	-	no_errors
PSAP	5660	genome.wustl.edu	36	10	73251668	73251668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	73251668	73251668	G	A	SNP	PSAP	NM_001042465	human	genbank	54_36p	-1	reviewed	missense	c.889	p.P297S	1	NULL	"HMMPfam_SapA,HMMSmart_SAPA,superfamily_Saposin_like,HMMPfam_SapB_1,HMMSmart_SapB,HMMPfam_SapB_2"	-	no_errors
ANAPC16	119504	genome.wustl.edu	36	10	73653810	73653810	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	73653810	73653810	G	C	SNP	C10orf104	NM_173473	human	genbank	54_36p	1	validated	missense	c.132	p.E44D	1	NULL	NULL	-	no_errors
OIT3	170392	genome.wustl.edu	36	10	74362137	74362137	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74362137	74362137	G	T	SNP	OIT3	NM_152635	human	genbank	54_36p	1	provisional	missense	c.1487	p.R496L	0.99	"HMMPfam_Zona_pellucida,HMMSmart_SM00241"	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241"	-	no_errors
P4HA1	5033	genome.wustl.edu	36	10	74480988	74480988	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74480988	74480988	A	T	SNP	P4HA1	NM_000917	human	genbank	54_36p	-1	reviewed	silent	c.729	p.G243	1	superfamily_TPR-like	"HMMPfam_P4Ha_N,superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy"	-	no_errors
TTC18	118491	genome.wustl.edu	36	10	74783467	74783467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74783467	74783467	C	A	SNP	TTC18	NM_145170	human	genbank	54_36p	-1	provisional	missense	c.103	p.A35S	1	NULL	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
ZMYND17	118490	genome.wustl.edu	36	10	74855969	74855969	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74855969	74855969	C	T	SNP	ZMYND17	NM_001024593	human	genbank	54_36p	-1	validated	silent	c.675	p.P225	0.01	NULL	"HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	-	no_errors
USP54	159195	genome.wustl.edu	36	10	74972831	74972831	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74972831	74972831	G	A	SNP	USP54	NM_152586	human	genbank	54_36p	-1	provisional	missense	c.440	p.A147V	1	superfamily_Cysteine proteinases	"superfamily_Cysteine proteinases,HMMPfam_UCH"	-	no_errors
KIAA0913	23053	genome.wustl.edu	36	10	75227656	75227656	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	75227656	75227656	G	T	SNP	KIAA0913	NM_015037	human	genbank	54_36p	1	validated	silent	c.3774	p.G1258	1	NULL	HMMPfam_SWIM	-	no_errors
MYST4	23522	genome.wustl.edu	36	10	76458706	76458706	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	76458706	76458706	A	G	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	missense	c.4118	p.E1373G	1	NULL	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
MYST4	23522	genome.wustl.edu	36	10	76459441	76459441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	76459441	76459441	G	T	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	missense	c.4853	p.S1618I	0.94	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Winged helix DNA-binding domain"	-	no_errors
DUPD1	338599	genome.wustl.edu	36	10	76488091	76488091	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	76488091	76488091	T	C	SNP	DUPD1	NM_001003892	human	genbank	54_36p	-1	provisional	missense	c.188	p.Y63C	1	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
KCNMA1	3778	genome.wustl.edu	36	10	78614645	78614645	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	78614645	78614645	A	C	SNP	KCNMA1	NM_001014797	human	genbank	54_36p	-1	reviewed	missense	c.638	p.F213C	1	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a,PatternScan_N6_MTASE"	-	no_errors
KIN	22944	genome.wustl.edu	36	10	7862042	7862042	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	7862042	7862042	T	C	SNP	KIN	NM_012311	human	genbank	54_36p	-1	reviewed	missense	c.359	p.K120R	1	HMMPfam_Kin17_mid	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_Kin17_mid"	-	no_errors
DLG5	9231	genome.wustl.edu	36	10	79246325	79246325	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	79246325	79246325	T	G	SNP	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	silent	c.4015	p.R1339	0.96	superfamily_PDZ domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
DLG5	9231	genome.wustl.edu	36	10	79271717	79271731	+	In_Frame_Del	DEL	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	-	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	79271717	79271731	CAGCTCCACTTCGGT	-	DEL	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1365_1351	p.TEVEL451in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.936:1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[79271645,79271957])"	no_errors
ZMIZ1	57178	genome.wustl.edu	36	10	80734929	80734929	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	80734929	80734929	C	A	SNP	ZMIZ1	NM_020338	human	genbank	54_36p	1	validated	nonsense	c.2289	p.C763*	1	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
GATA3	2625	genome.wustl.edu	36	10	8140557	8140557	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	8140557	8140557	G	A	SNP	GATA3	NM_001002295	human	genbank	54_36p	1	validated	silent	c.525	p.S175	0.88	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA"	-	no_errors
TUBB8	347688	genome.wustl.edu	36	10	83295	83295	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	83295	83295	G	C	SNP	TUBB8	NM_177987	human	genbank	54_36p	-1	provisional	missense	c.1037	p.P346R	1	"superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	-	no_errors
LARP4B	23185	genome.wustl.edu	36	10	865530	865530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	865530	865530	C	T	SNP	LARP5	NM_015155	human	genbank	54_36p	-1	provisional	missense	c.920	p.R307Q	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87477688	87477688	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	87477688	87477688	G	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	silent	c.1437	p.G479	1	"HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87479305	87479305	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	87479305	87479305	T	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	missense	c.1280	p.E427V	1	superfamily_Periplasmic binding protein-like I	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87956304	87956304	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	87956304	87956304	G	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	missense	c.317	p.T106M	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
LDB3	11155	genome.wustl.edu	36	10	88441666	88441666	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	88441666	88441666	C	T	SNP	LDB3	NM_007078	human	genbank	54_36p	1	reviewed	silent	c.723	p.S241	1	NULL	"HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMSmart_SM00735,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1"	-	no_errors
FAM35A	54537	genome.wustl.edu	36	10	88920679	88920679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	88920679	88920679	C	G	SNP	FAM35A	NM_019054	human	genbank	54_36p	1	validated	missense	c.1931	p.A644G	1	NULL	NULL	-	no_errors
PTEN	5728	genome.wustl.edu	36	10	89701885	89701885	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	89701885	89701885	G	T	SNP	PTEN	NM_000314	human	genbank	54_36p	1	reviewed	missense	c.523	p.V175L	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
RNLS	55328	genome.wustl.edu	36	10	90112411	90112411	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	90112411	90112411	C	G	SNP	C10orf59	NM_001031709	human	genbank	54_36p	-1	provisional	missense	c.578	p.R193P	1	superfamily_FAD/NAD(P)-binding domain	"HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
LIPJ	142910	genome.wustl.edu	36	10	90356418	90356418	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	90356418	90356418	C	A	SNP	LIPJ	NM_001010939	human	genbank	54_36p	1	provisional	missense	c.875	p.S292Y	0.33	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	"HMMPfam_Abhydro_lipase,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
LOC119358	119358	genome.wustl.edu	36	10	91728509	91728509	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	91728509	91728509	G	A	SNP	LOC119358	XM_061427	human	genbank	54_36p	1	model	missense	c.56	p.R19Q	1	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
SRP9L1	653226	genome.wustl.edu	36	10	93556982	93556982	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	93556982	93556982	G	T	SNP	LOC653226	XM_927451	human	genbank	54_36p	-1	model	missense	c.195	p.F65L	1	"HMMPfam_SRP9,superfamily_Signal recognition particle alu RNA binding heterodimer SRP9/14"	"HMMPfam_SRP9,superfamily_Signal recognition particle alu RNA binding heterodimer SRP9/14"	-	no_errors
TNKS2	80351	genome.wustl.edu	36	10	93592071	93592071	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	93592071	93592071	G	C	SNP	TNKS2	NM_025235	human	genbank	54_36p	1	validated	missense	c.2002	p.D668H	1	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2,superfamily_SSF56399,HMMPfam_PARP"	-	no_errors
HHEX	3087	genome.wustl.edu	36	10	94444440	94444440	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	94444440	94444440	A	G	SNP	HHEX	NM_002729	human	genbank	54_36p	1	reviewed	missense	c.748	p.I250V	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
LOC387703	387703	genome.wustl.edu	36	10	94958431	94958431	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	94958431	94958431	G	T	SNP	LOC387703	XR_016730	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PDE6C	5146	genome.wustl.edu	36	10	95375354	95375359	+	In_Frame_Del	DEL	AGAAGT	AGAAGT	-	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	AGAAGT	AGAAGT	AGAAGT	-	AGAAGT	AGAAGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	95375354	95375359	AGAAGT	-	DEL	PDE6C	NM_006204	human	genbank	54_36p	1	validated	in_frame_del	c.897_902	p.VE301in_frame_del	1.000:1.000:1.000:1.000:0.936:0.921	"HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781"	"superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	"(deletion:cds_exon[95375322,95375396])"	no_errors
LGI1	9211	genome.wustl.edu	36	10	95543049	95543049	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	95543049	95543049	G	C	SNP	LGI1	NM_005097	human	genbank	54_36p	1	reviewed	missense	c.790	p.E264Q	1	HMMPfam_EPTP	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_EPTP"	-	no_errors
CYP2C18	1562	genome.wustl.edu	36	10	96437584	96437584	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96437584	96437584	G	T	SNP	CYP2C18	NM_000772	human	genbank	54_36p	1	reviewed	missense	c.236	p.G79V	0.87	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C19	1557	genome.wustl.edu	36	10	96525277	96525277	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96525277	96525277	A	C	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.472	p.K158Q	0.15	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C19	1557	genome.wustl.edu	36	10	96602522	96602522	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96602522	96602522	T	A	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.1334	p.L445Q	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C9	1559	genome.wustl.edu	36	10	96721970	96721970	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96721970	96721970	G	A	SNP	CYP2C9	NM_000771	human	genbank	54_36p	1	reviewed	silent	c.939	p.L313	0.99	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C9	1559	genome.wustl.edu	36	10	96738634	96738634	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96738634	96738634	G	C	SNP	CYP2C9	NM_000771	human	genbank	54_36p	1	reviewed	missense	c.1332	p.E444D	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
SORBS1	10580	genome.wustl.edu	36	10	97086482	97086482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	97086482	97086482	C	G	SNP	SORBS1	NM_001034954	human	genbank	54_36p	-1	validated	missense	c.3425	p.G1142A	0.86	NULL	"HMMPfam_Sorb,HMMSmart_SM00459,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
ENTPD1	953	genome.wustl.edu	36	10	97589521	97589521	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	97589521	97589521	C	T	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	1	validated	silent	c.249	p.G83	1	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
ENTPD1	953	genome.wustl.edu	36	10	97614610	97614610	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	97614610	97614610	T	C	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	1	validated	splice_site	c.1347+2	e9+2	1	-	-	-	no_errors
DNTT	1791	genome.wustl.edu	36	10	98072464	98072464	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	98072464	98072464	C	A	SNP	DNTT	NM_004088	human	genbank	54_36p	1	reviewed	missense	c.739	p.Q247K	0.89	"HMMSmart_SM00483,superfamily_DNA polymerase beta-like second domain,HMMPfam_DNA_pol_lambd_f"	###############################################################################################################################################################################################################################################################	-	no_errors
LCOR	84458	genome.wustl.edu	36	10	98705139	98705139	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98705139	98705139	G	C	SNP	LCOR	NM_032440	human	genbank	54_36p	1	provisional	missense	c.772	p.V258L	1	NULL	HMMPfam_HTH_psq	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98763798	98763798	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98763798	98763798	T	A	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.3077	p.N1026I	1	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00274,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL"	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98792711	98792711	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98792711	98792711	G	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.2101	p.P701A	1	"HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98814622	98814622	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98814622	98814622	G	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.487	p.Q163E	1	"HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
RRP12	23223	genome.wustl.edu	36	10	99131475	99131475	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99131475	99131475	G	A	SNP	RRP12	NM_015179	human	genbank	54_36p	-1	validated	missense	c.1307	p.T436M	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_NUC173"	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99633985	99633985	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99633985	99633985	C	T	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1600	p.E534K	0.89	NULL	"superfamily_Integrin alpha N-terminal domain,HMMPfam_FG-GAP,HMMPfam_UnbV_ASPIC,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179"	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99634050	99634050	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99634050	99634050	A	C	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1535	p.M512R	0.28	HMMPfam_UnbV_ASPIC	"HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain"	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99645642	99645642	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99645642	99645642	C	A	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1307	p.R436L	1	superfamily_Integrin alpha N-terminal domain	"HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain"	-	no_errors
SNORD113-5	767565	genome.wustl.edu	36	14	100474284	100474284	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	100474284	100474284	A	G	SNP	SNORD113-5	NR_003233	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0	-	-	-	no_errors
SNORD113-9	767569	genome.wustl.edu	36	14	100481803	100481803	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	100481803	100481803	A	T	SNP	SNORD113-9	NR_003237	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.93	-	-	-	no_errors
SNORD114-11	767589	genome.wustl.edu	36	14	100504268	100504268	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	100504268	100504268	A	T	SNP	SNORD114-11	NR_003204	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.02	-	-	-	no_errors
RAB40AL	282808	genome.wustl.edu	36	X	102079111	102079111	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	102079111	102079111	C	T	SNP	RAB40AL	NM_001031834	human	genbank	54_36p	1	provisional	missense	c.209	p.T70M	1	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,HMMSmart_SOCS,HMMPfam_SOCS_box"	-	no_errors
RAB40AL	282808	genome.wustl.edu	36	X	102079112	102079112	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	102079112	102079112	G	T	SNP	RAB40AL	NM_001031834	human	genbank	54_36p	1	provisional	silent	c.210	p.T70	0.99	"HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540"	"HMMPfam_SOCS_box,HMMSmart_SOCS,HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540"	-	no_errors
IGHG2	3501	genome.wustl.edu	36	14	105180646	105180646	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105180646	105180646	A	G	SNP	IGHG2	ENST00000390545	human	ensembl	54_36p	-1	known	missense	c.919	p.C307R	0	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHG2	3501	genome.wustl.edu	36	14	105181466	105181466	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105181466	105181466	C	G	SNP	IGHG2	ENST00000390544	human	ensembl	54_36p	-1	known	missense	c.310	p.V104L	0.02	superfamily_Immunoglobulin	"PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211894	0	genome.wustl.edu	36	14	105206287	105206287	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105206287	105206287	G	C	SNP	ENSG00000211894	ENST00000390546	human	ensembl	54_36p	-1	known	missense	c.433	p.R145G	0.04	"superfamily_SSF48726,HMMPfam_C1-set"	"superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000214405	0	genome.wustl.edu	36	3	105264954	105264954	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	105264954	105264954	C	G	SNP	ENSG00000214405	ENST00000341355	human	ensembl	54_36p	1	known	missense	c.388	p.Q130E	1	"superfamily_SSF52540,HMMPfam_Ras"	"superfamily_SSF52540,HMMPfam_Ras"	-	no_start_codon
ENSG00000180574	0	genome.wustl.edu	36	12	10550232	10550232	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10550232	10550232	C	G	SNP	ENSG00000180574	ENST00000322446	human	ensembl	54_36p	1	known	missense	c.464	p.A155G	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_eIF2_C"	-	no_errors
ENSG00000211945	0	genome.wustl.edu	36	14	105712750	105712750	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105712750	105712750	A	T	SNP	ENSG00000211945	ENST00000390605	human	ensembl	54_36p	-1	known	missense	c.209	p.I70N	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211964	0	genome.wustl.edu	36	14	106064967	106064967	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	106064967	106064967	G	T	SNP	ENSG00000211964	ENST00000390624	human	ensembl	54_36p	-1	known	missense	c.243	p.D81E	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
PIRT	644139	genome.wustl.edu	36	17	10669679	10669679	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10669679	10669679	C	T	SNP	PIRT	NM_001101387	human	genbank	54_36p	-1	validated	missense	c.9	p.M3I	1	NULL	NULL	-	no_errors
CBLL1	100128737	genome.wustl.edu	36	7	107176637	107176637	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107176637	107176637	C	T	SNP	LOC100128737	XM_001718329	human	genbank	54_36p	-1	model	missense	c.3	p.M1I	1	NULL	NULL	-	no_errors
LOC440063	440063	genome.wustl.edu	36	11	100042557	100042557	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	100042557	100042557	C	T	SNP	LOC440063	XR_016123	human	genbank	54_36p	1	model	rna	NULL	NULL	0.95	-	-	-	pseudogene
ANGPTL5	253935	genome.wustl.edu	36	11	101278578	101278578	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101278578	101278578	G	A	SNP	ANGPTL5	NM_178127	human	genbank	54_36p	-1	validated	missense	c.524	p.S175F	0.83	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C"	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
YAP1	10413	genome.wustl.edu	36	11	101605876	101605876	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101605876	101605876	T	A	SNP	YAP1	NM_006106	human	genbank	54_36p	1	reviewed	missense	c.1360	p.L454I	1	NULL	"superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	-	no_errors
BIRC3	330	genome.wustl.edu	36	11	101700819	101700819	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101700819	101700819	A	G	SNP	BIRC3	NM_001165	human	genbank	54_36p	1	reviewed	silent	c.369	p.S123	0	NULL	"PatternScan_ZF_RING_1,superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
BIRC3	330	genome.wustl.edu	36	11	101701193	101701193	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101701193	101701193	C	G	SNP	BIRC3	NM_001165	human	genbank	54_36p	1	reviewed	missense	c.743	p.S248C	0.92	superfamily_SSF57924	"HMMPfam_CARD,HMMSmart_CARD,HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMSmart_RING,superfamily_DEATH_like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57924"	-	no_errors
MMP7	4316	genome.wustl.edu	36	11	101906626	101906626	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101906626	101906626	G	T	SNP	MMP7	NM_002423	human	genbank	54_36p	-1	reviewed	missense	c.16	p.L6M	0	NULL	"superfamily_PGBD_like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE"	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102092270	102092270	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102092270	102092270	C	A	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.875	p.R292L	0.98	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102092273	102092273	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102092273	102092273	A	G	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.872	p.L291P	0.96	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486"	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102098605	102098605	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102098605	102098605	C	T	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.112	p.E38K	0.34	"HMMPfam_PG_binding_1,superfamily_PGBD_like"	"superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486"	-	no_errors
MMP13	4322	genome.wustl.edu	36	11	102320237	102320237	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102320237	102320237	C	T	SNP	MMP13	NM_002427	human	genbank	54_36p	-1	reviewed	missense	c.1384	p.V462I	0.92	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
DYNC2H1	79659	genome.wustl.edu	36	11	102580816	102580816	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102580816	102580816	C	T	SNP	DYNC2H1	NM_001080463	human	genbank	54_36p	1	provisional	silent	c.8367	p.F2789	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
CASP5	838	genome.wustl.edu	36	11	104378115	104378115	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	104378115	104378115	C	G	SNP	CASP5	NM_004347	human	genbank	54_36p	-1	reviewed	missense	c.519	p.E173D	0	"superfamily_SSF52129,HMMSmart_CASc"	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52129,HMMSmart_CASc,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
GRIA4	2893	genome.wustl.edu	36	11	105281230	105281230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	105281230	105281230	C	A	SNP	GRIA4	NM_000829	human	genbank	54_36p	1	reviewed	missense	c.1151	p.P384H	0.93	superfamily_SSF53822	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
KBTBD3	143879	genome.wustl.edu	36	11	105434873	105434873	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	105434873	105434873	G	T	SNP	KBTBD3	NM_152433	human	genbank	54_36p	-1	validated	missense	c.162	p.F54L	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
MRVI1	10335	genome.wustl.edu	36	11	10607749	10607749	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	10607749	10607749	C	T	SNP	MRVI1	NM_001098579	human	genbank	54_36p	-1	reviewed	silent	c.459	p.A153	1	NULL	HMMPfam_MRVI1	-	no_errors
LOC642732	642732	genome.wustl.edu	36	11	106201074	106201074	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	106201074	106201074	G	A	SNP	LOC642732	XR_016381	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC642732	642732	genome.wustl.edu	36	11	106203375	106203375	+	RNA	SNP	G	C	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	106203375	106203375	G	C	SNP	LOC642732	XR_016381	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CUL5	8065	genome.wustl.edu	36	11	107430593	107430593	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107430593	107430593	G	T	SNP	CUL5	NM_003478	human	genbank	54_36p	1	validated	missense	c.563	p.C188F	1	"superfamily_Cullin repeat,HMMPfam_Cullin"	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_Winged helix DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
ACAT1	38	genome.wustl.edu	36	11	107511134	107511134	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107511134	107511134	G	T	SNP	ACAT1	NM_000019	human	genbank	54_36p	1	reviewed	missense	c.390	p.M130I	1	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1"	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
ACAT1	38	genome.wustl.edu	36	11	107511160	107511160	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107511160	107511160	G	A	SNP	ACAT1	NM_000019	human	genbank	54_36p	1	reviewed	missense	c.416	p.S139N	1	"HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,superfamily_Thiolase-like"	"HMMPfam_Thiolase_N,HMMPfam_Thiolase_C,PatternScan_THIOLASE_1,PatternScan_THIOLASE_3,PatternScan_THIOLASE_2,superfamily_Thiolase-like"	-	no_errors
NPAT	4863	genome.wustl.edu	36	11	107537471	107537471	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107537471	107537471	T	C	SNP	NPAT	NM_002519	human	genbank	54_36p	-1	validated	silent	c.3552	p.S1184	0.46	NULL	HMMSmart_SM00667	-	no_errors
ATM	472	genome.wustl.edu	36	11	107658692	107658692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107658692	107658692	G	C	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.3622	p.D1208H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
ATM	472	genome.wustl.edu	36	11	107707384	107707384	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107707384	107707384	G	A	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.7519	p.D2507N	0.1	superfamily_ARM repeat	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
ARHGAP20	57569	genome.wustl.edu	36	11	109955919	109955919	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	109955919	109955919	G	T	SNP	ARHGAP20	NM_020809	human	genbank	54_36p	-1	validated	missense	c.2961	p.D987E	0.01	NULL	"superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_RA,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP20	57569	genome.wustl.edu	36	11	109958322	109958322	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	109958322	109958322	A	T	SNP	ARHGAP20	NM_020809	human	genbank	54_36p	-1	validated	missense	c.1653	p.F551L	1	superfamily_GTPase activation domain GAP	"HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ALG9	79796	genome.wustl.edu	36	11	111229327	111229327	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111229327	111229327	C	T	SNP	ALG9	NM_024740	human	genbank	54_36p	-1	reviewed	nonsense	c.882	p.W294*	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HSPB2	3316	genome.wustl.edu	36	11	111289671	111289671	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111289671	111289671	C	A	SNP	HSPB2	NM_001541	human	genbank	54_36p	1	validated	silent	c.391	p.R131	1	"superfamily_HSP20-like chaperones,HMMPfam_HSP20"	"superfamily_HSP20-like chaperones,HMMPfam_HSP20"	-	no_errors
DLAT	1737	genome.wustl.edu	36	11	111404779	111404779	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	111404779	111404779	C	G	SNP	DLAT	NM_001931	human	genbank	54_36p	1	validated	missense	c.560	p.P187R	0.63	superfamily_Single hybrid motif	###############################################################################################################################################################################################################################################################	-	no_errors
PIH1D2	120379	genome.wustl.edu	36	11	111443833	111443833	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111443833	111443833	G	A	SNP	PIH1D2	NM_138789	human	genbank	54_36p	-1	validated	missense	c.920	p.T307M	0.42	HMMPfam_PIH1	HMMPfam_PIH1	-	no_errors
NCAM1	4684	genome.wustl.edu	36	11	112583779	112583779	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	112583779	112583779	T	C	SNP	NCAM1	ENST00000404693	human	ensembl	54_36p	1	known	missense	c.407	p.I136T	0.97	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
ZBTB16	7704	genome.wustl.edu	36	11	113440042	113440042	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	113440042	113440042	C	A	SNP	ZBTB16	NM_001018011	human	genbank	54_36p	1	reviewed	missense	c.810	p.D270E	1	NULL	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
NNMT	4837	genome.wustl.edu	36	11	113672574	113672574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	113672574	113672574	C	G	SNP	NNMT	NM_006169	human	genbank	54_36p	1	reviewed	missense	c.86	p.S29C	0.69	"HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_NNMT_PNMT_TEMT"	-	no_errors
RBM7	10179	genome.wustl.edu	36	11	113783439	113783439	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	113783439	113783439	A	T	SNP	RBM7	NM_016090	human	genbank	54_36p	1	provisional	missense	c.501	p.Q167H	0.13	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
FAM55B	120406	genome.wustl.edu	36	11	114074434	114074434	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	114074434	114074434	G	A	SNP	FAM55B	ENST00000375475	human	ensembl	54_36p	1	known	missense	c.590	p.S197N	1	NULL	superfamily_E set domains	-	no_errors
CADM1	23705	genome.wustl.edu	36	11	114554637	114554637	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	114554637	114554637	C	A	SNP	CADM1	NM_014333	human	genbank	54_36p	-1	validated	missense	c.1147	p.V383L	1	NULL	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_ig,HMMSmart_SM00294"	-	no_errors
CADM1	23705	genome.wustl.edu	36	11	114593903	114593903	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	114593903	114593903	A	T	SNP	CADM1	NM_014333	human	genbank	54_36p	-1	validated	missense	c.740	p.I247N	1	superfamily_Immunoglobulin	"HMMSmart_SM00294,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIK3	23387	genome.wustl.edu	36	11	116237306	116237306	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	116237306	116237306	T	G	SNP	KIAA0999	NM_025164	human	genbank	54_36p	-1	validated	missense	c.2001	p.L667F	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BACE1	23621	genome.wustl.edu	36	11	116666422	116666422	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	116666422	116666422	G	C	SNP	BACE1	NM_012104	human	genbank	54_36p	-1	reviewed	missense	c.1256	p.A419G	1	superfamily_Acid proteases	"superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
CEP164	22897	genome.wustl.edu	36	11	116727895	116727896	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	116727895	116727896	-	C	INS	CEP164	NM_014956	human	genbank	54_36p	1	validated	frame_shift_ins	c.374_375	p.K128fs	0.964:0.403	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW"	-	no_errors
DSCAML1	57453	genome.wustl.edu	36	11	117156448	117156448	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117156448	117156448	T	A	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.514	p.I172F	1	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
FXYD2	100287298	genome.wustl.edu	36	11	117196784	117196784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	117196784	117196784	C	T	SNP	FXYD2	NM_001680	human	genbank	54_36p	-1	reviewed	missense	c.176	p.R59K	0.24	HMMPfam_ATP1G1_PLM_MAT8	"HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD"	-	no_errors
CD3D	915	genome.wustl.edu	36	11	117716412	117716412	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117716412	117716412	G	A	SNP	CD3D	NM_000732	human	genbank	54_36p	-1	reviewed	silent	c.162	p.D54	0	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_ITAM,HMMSmart_SM00077"	-	no_errors
MLL	4297	genome.wustl.edu	36	11	117869054	117869054	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117869054	117869054	G	C	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.5068	p.D1690H	1	HMMSmart_SM00297	###############################################################################################################################################################################################################################################################	-	no_errors
MLL	4297	genome.wustl.edu	36	11	117878814	117878814	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117878814	117878814	A	G	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.6988	p.K2330E	0.81	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ARCN1	372	genome.wustl.edu	36	11	117959773	117959773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	117959773	117959773	G	C	SNP	ARCN1	NM_001655	human	genbank	54_36p	1	reviewed	missense	c.487	p.A163P	1	NULL	"superfamily_SNARE-like,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub"	-	no_errors
PHLDB1	23187	genome.wustl.edu	36	11	118007142	118007143	+	Missense_Mutation	DNP	GC	GC	CT	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	GC	GC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	118007142	118007143	GC	CT	DNP	PHLDB1	NM_015157	human	genbank	54_36p	1	validated	missense	c.1836_1837	p.QR612HC	1.000:1.000	NULL	"superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
BCL9L	283149	genome.wustl.edu	36	11	118277624	118277624	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118277624	118277624	G	A	SNP	BCL9L	NM_182557	human	genbank	54_36p	-1	validated	missense	c.2038	p.R680W	1	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
VPS11	55823	genome.wustl.edu	36	11	118446271	118446271	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118446271	118446271	C	G	SNP	VPS11	ENST00000300793	human	ensembl	54_36p	1	known	missense	c.587	p.A196G	0.99	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
VPS11	55823	genome.wustl.edu	36	11	118453922	118453922	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118453922	118453922	G	A	SNP	VPS11	ENST00000300793	human	ensembl	54_36p	1	known	missense	c.1694	p.G565E	0.49	NULL	"HMMSmart_SM00184,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
HINFP	25988	genome.wustl.edu	36	11	118506671	118506671	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118506671	118506671	G	C	SNP	HINFP	NM_015517	human	genbank	54_36p	1	validated	missense	c.208	p.E70Q	1	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667"	-	no_errors
ABCG4	64137	genome.wustl.edu	36	11	118536908	118536908	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118536908	118536908	C	T	SNP	ABCG4	NM_022169	human	genbank	54_36p	1	reviewed	missense	c.1823	p.A608V	0.8	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
MCAM	4162	genome.wustl.edu	36	11	118688545	118688545	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118688545	118688545	C	T	SNP	MCAM	NM_006500	human	genbank	54_36p	-1	validated	missense	c.763	p.E255K	1	superfamily_Immunoglobulin	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
RNF26	79102	genome.wustl.edu	36	11	118712206	118712206	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118712206	118712206	G	A	SNP	RNF26	NM_032015	human	genbank	54_36p	1	reviewed	silent	c.1164	p.K388	1	"superfamily_RING/U-box,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMPfam_zf-C3HC4"	-	no_errors
PVRL1	5818	genome.wustl.edu	36	11	119050543	119050543	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	119050543	119050543	C	T	SNP	PVRL1	NM_203286	human	genbank	54_36p	-1	validated	missense	c.1028	p.G343D	0.03	NULL	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv,HMMPfam_C2-set_2,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SC5DL	6309	genome.wustl.edu	36	11	120682321	120682321	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120682321	120682321	C	T	SNP	SC5DL	NM_001024956	human	genbank	54_36p	1	reviewed	silent	c.360	p.V120	0	NULL	HMMPfam_FA_hydroxylase	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120896761	120896761	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120896761	120896761	A	G	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	missense	c.1397	p.N466S	1	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602"	###############################################################################################################################################################################################################################################################	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120926506	120926506	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120926506	120926506	A	G	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	missense	c.2183	p.Y728C	1	HMMSmart_SM00602	###############################################################################################################################################################################################################################################################	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120967008	120967008	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120967008	120967008	C	T	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	silent	c.4302	p.D1434	1	"HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module"	###############################################################################################################################################################################################################################################################	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1220871	1220871	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	1220871	1220871	C	T	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.6194	p.T2065I	0	NULL	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1"	-	no_errors
CRTAM	56253	genome.wustl.edu	36	11	122231688	122231688	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122231688	122231688	G	T	SNP	CRTAM	NM_019604	human	genbank	54_36p	1	validated	missense	c.566	p.G189V	0.01	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2"	-	no_errors
C11orf63	79864	genome.wustl.edu	36	11	122279934	122279934	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122279934	122279934	G	C	SNP	C11orf63	NM_024806	human	genbank	54_36p	1	validated	missense	c.436	p.A146P	0.01	NULL	NULL	-	no_errors
C11orf63	79864	genome.wustl.edu	36	11	122335312	122335312	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122335312	122335312	C	T	SNP	C11orf63	NM_024806	human	genbank	54_36p	1	validated	silent	c.2286	p.H762	1	NULL	NULL	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1223834	1223834	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	1223834	1223834	A	G	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.9157	p.T3053A	0	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
ASAM	79827	genome.wustl.edu	36	11	122459124	122459124	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122459124	122459124	G	A	SNP	ASAM	NM_024769	human	genbank	54_36p	-1	validated	silent	c.558	p.D186	1	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
SCN3B	55800	genome.wustl.edu	36	11	123014126	123014126	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123014126	123014126	C	T	SNP	SCN3B	NM_001040151	human	genbank	54_36p	-1	reviewed	missense	c.562	p.E188K	0.99	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
SCN3B	55800	genome.wustl.edu	36	11	123018415	123018415	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123018415	123018415	G	A	SNP	SCN3B	NM_001040151	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132W	0.97	"HMMSmart_SM00409,HMMPfam_V-set"	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
ZNF202	7753	genome.wustl.edu	36	11	123102703	123102703	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123102703	123102703	T	C	SNP	ZNF202	NM_003455	human	genbank	54_36p	-1	validated	missense	c.1159	p.T387A	0.16	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
OR6X1	390260	genome.wustl.edu	36	11	123130200	123130200	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123130200	123130200	C	T	SNP	OR6X1	NM_001005188	human	genbank	54_36p	-1	provisional	silent	c.237	p.L79	0.22	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4D5	219875	genome.wustl.edu	36	11	123316252	123316252	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123316252	123316252	G	C	SNP	OR4D5	NM_001001965	human	genbank	54_36p	1	provisional	missense	c.719	p.C240S	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR10G7	390265	genome.wustl.edu	36	11	123414444	123414444	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123414444	123414444	T	C	SNP	OR10G7	NM_001004463	human	genbank	54_36p	-1	provisional	missense	c.475	p.T159A	0.07	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10G7	390265	genome.wustl.edu	36	11	123414884	123414884	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123414884	123414884	A	T	SNP	OR10G7	NM_001004463	human	genbank	54_36p	-1	provisional	missense	c.35	p.L12H	0.95	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8G5	219865	genome.wustl.edu	36	11	123640505	123640505	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123640505	123640505	G	A	SNP	OR8G5	NM_001005198	human	genbank	54_36p	1	provisional	silent	c.573	p.A191	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8B3	390271	genome.wustl.edu	36	11	123772093	123772093	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123772093	123772093	C	T	SNP	OR8B3	NM_001005467	human	genbank	54_36p	-1	provisional	missense	c.365	p.R122H	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8B8	26493	genome.wustl.edu	36	11	123815699	123815699	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123815699	123815699	C	G	SNP	OR8B8	NM_012378	human	genbank	54_36p	-1	provisional	missense	c.493	p.G165R	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8A1	390275	genome.wustl.edu	36	11	123945635	123945635	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123945635	123945635	C	T	SNP	OR8A1	NM_001005194	human	genbank	54_36p	1	provisional	missense	c.461	p.S154F	0.08	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124123564	124123564	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124123564	124123564	G	A	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	silent	c.783	p.F261	0.98	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124125917	124125920	+	Frame_Shift_Del	DEL	GTCA	GTCA	-	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	GTCA	GTCA	GTCA	-	GTCA	GTCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124125917	124125920	GTCA	-	DEL	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	frame_shift_del	c.330_327	p.D110fs	0.066:0.117:0.122:0.118	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	"(deletion:cds_exon[124125820,124126027])"	no_errors
ROBO3	64221	genome.wustl.edu	36	11	124255593	124255593	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124255593	124255593	C	T	SNP	ROBO3	NM_022370	human	genbank	54_36p	1	validated	missense	c.4028	p.T1343M	0.96	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ROBO4	54538	genome.wustl.edu	36	11	124268986	124268986	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124268986	124268986	G	T	SNP	ROBO4	NM_019055	human	genbank	54_36p	-1	validated	missense	c.1484	p.A495D	0.02	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
CCDC15	80071	genome.wustl.edu	36	11	124362919	124362919	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124362919	124362919	C	G	SNP	CCDC15	NM_025004	human	genbank	54_36p	1	validated	silent	c.1587	p.G529	0.05	NULL	NULL	-	no_errors
PKNOX2	63876	genome.wustl.edu	36	11	124743010	124743010	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124743010	124743010	C	T	SNP	PKNOX2	NM_022062	human	genbank	54_36p	1	validated	missense	c.146	p.S49L	1	NULL	"PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
DDX25	29118	genome.wustl.edu	36	11	125292231	125292231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	125292231	125292231	G	C	SNP	DDX25	NM_013264	human	genbank	54_36p	1	reviewed	missense	c.571	p.E191Q	1	HMMSmart_SM00487	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
CDON	50937	genome.wustl.edu	36	11	125379068	125379068	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	125379068	125379068	C	A	SNP	CDON	NM_016952	human	genbank	54_36p	-1	validated	missense	c.1965	p.M655I	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
FLI1	2313	genome.wustl.edu	36	11	128185583	128185583	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	128185583	128185583	G	A	SNP	FLI1	NM_002017	human	genbank	54_36p	1	validated	silent	c.849	p.L283	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
NFRKB	4798	genome.wustl.edu	36	11	129244766	129244766	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129244766	129244766	C	G	SNP	NFRKB	NM_006165	human	genbank	54_36p	-1	validated	missense	c.3439	p.G1147R	0.79	NULL	NULL	-	no_errors
APLP2	334	genome.wustl.edu	36	11	129484610	129484610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129484610	129484610	T	C	SNP	APLP2	NM_001642	human	genbank	54_36p	1	validated	missense	c.182	p.M61T	1	"HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain"	###############################################################################################################################################################################################################################################################	-	no_errors
APLP2	334	genome.wustl.edu	36	11	129515549	129515549	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129515549	129515549	G	T	SNP	APLP2	NM_001642	human	genbank	54_36p	1	validated	missense	c.1920	p.E640D	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ST14	6768	genome.wustl.edu	36	11	129575215	129575215	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129575215	129575215	A	C	SNP	ST14	NM_021978	human	genbank	54_36p	1	reviewed	missense	c.1967	p.H656P	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	###############################################################################################################################################################################################################################################################	-	no_errors
SNX19	399979	genome.wustl.edu	36	11	130290258	130290258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	130290258	130290258	C	A	SNP	SNX19	NM_014758	human	genbank	54_36p	-1	validated	missense	c.787	p.V263L	0	"HMMPfam_PXA,HMMSmart_SM00313"	"HMMPfam_PXA,HMMSmart_SM00313,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_Nexin_C"	-	no_errors
SNX19	399979	genome.wustl.edu	36	11	130290809	130290809	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	130290809	130290809	A	G	SNP	SNX19	NM_014758	human	genbank	54_36p	-1	validated	missense	c.236	p.L79P	1	NULL	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PXA,HMMPfam_Nexin_C,HMMSmart_SM00313"	-	no_errors
NTM	50863	genome.wustl.edu	36	11	131521404	131521404	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	131521404	131521404	G	A	SNP	NTM	NM_001048209	human	genbank	54_36p	1	reviewed	silent	c.186	p.R62	1	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
NTM	50863	genome.wustl.edu	36	11	131689818	131689818	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	131689818	131689818	G	T	SNP	HNT	ENST00000374784	human	ensembl	54_36p	1	known	silent	c.945	p.V315	0.96	NULL	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
JAM3	83700	genome.wustl.edu	36	11	133444255	133444255	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	133444255	133444255	C	A	SNP	JAM3	NM_032801	human	genbank	54_36p	1	reviewed	missense	c.202	p.L68I	0.78	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
NCAPD3	23310	genome.wustl.edu	36	11	133533032	133533032	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	133533032	133533032	C	A	SNP	NCAPD3	NM_015261	human	genbank	54_36p	-1	validated	splice_site	c.4174+1	e31+1	0.07	-	-	-	no_errors
PTH	5741	genome.wustl.edu	36	11	13470546	13470546	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	13470546	13470546	A	G	SNP	PTH	NM_000315	human	genbank	54_36p	-1	reviewed	silent	c.330	p.T110	0.06	HMMPfam_Parathyroid	"HMMPfam_Parathyroid,HMMSmart_PTH,PatternScan_PARATHYROID"	-	no_errors
FAR1	84188	genome.wustl.edu	36	11	13705692	13705692	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	13705692	13705692	A	T	SNP	FAR1	NM_032228	human	genbank	54_36p	1	validated	missense	c.1271	p.D424V	1	HMMPfam_Sterile	"superfamily_NAD(P)-bd,HMMPfam_NAD_binding_4,HMMPfam_Sterile"	-	no_errors
CYP2R1	120227	genome.wustl.edu	36	11	14858846	14858846	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	14858846	14858846	G	A	SNP	CYP2R1	NM_024514	human	genbank	54_36p	-1	reviewed	nonsense	c.412	p.R138*	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
KRTAP5-3	387266	genome.wustl.edu	36	11	1585657	1585657	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	1585657	1585657	C	A	SNP	KRTAP5-3	NM_001012708	human	genbank	54_36p	-1	validated	missense	c.535	p.G179C	0.18	PatternScan_VWFC_1	"PatternScan_4FE4S_FER_1,PatternScan_VWFC_1"	-	no_errors
SOX6	55553	genome.wustl.edu	36	11	15967251	15967251	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	15967251	15967251	G	A	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	missense	c.1774	p.R592C	1	superfamily_HMG-box	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
SOX6	55553	genome.wustl.edu	36	11	16296734	16296734	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	16296734	16296734	T	G	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	silent	c.279	p.R93	1	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box"	-	no_errors
PIK3C2A	5286	genome.wustl.edu	36	11	17128748	17128748	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17128748	17128748	G	C	SNP	PIK3C2A	NM_002645	human	genbank	54_36p	-1	validated	missense	c.1200	p.H400Q	0.01	superfamily_Ubiquitin-like	###############################################################################################################################################################################################################################################################	-	no_errors
KCNJ11	3767	genome.wustl.edu	36	11	17365114	17365121	+	Frame_Shift_Del	DEL	GGGCCCGC	GGGCCCGC	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	GGGCCCGC	GGGCCCGC	GGGCCCGC	-	GGGCCCGC	GGGCCCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17365114	17365121	GGGCCCGC	-	DEL	KCNJ11	NM_000525	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1101_1094	p.R365fs	0.057:0.060:0.050:0.001:0.001:0.001:0.000:0.001	HMMPfam_IRK	"HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set"	"(deletion:cds_exon[17365042,17366214])"	no_errors
USH1C	10083	genome.wustl.edu	36	11	17505139	17505139	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17505139	17505139	C	A	SNP	USH1C	NM_153676	human	genbank	54_36p	-1	reviewed	missense	c.521	p.S174I	1	superfamily_PDZ	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
MYOD1	4654	genome.wustl.edu	36	11	17698019	17698019	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17698019	17698019	G	T	SNP	MYOD1	NM_002478	human	genbank	54_36p	1	reviewed	silent	c.114	p.P38	0.97	"HMMPfam_Basic,HMMSmart_BASIC"	"HMMPfam_Basic,HMMSmart_BASIC,superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18687509	18687509	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18687509	18687509	C	T	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	splice_site	c.2695+1	e16+1	1	-	-	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18693664	18693664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18693664	18693664	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.1422	p.E474D	0.99	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18699666	18699666	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18699666	18699666	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.370	p.V124L	0.99	"HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726"	-	no_errors
PTPN5	84867	genome.wustl.edu	36	11	18707988	18707988	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18707988	18707988	A	T	SNP	PTPN5	ENST00000396166	human	ensembl	54_36p	-1	known	missense	c.101	p.L34Q	0	HMMSmart_PTPc	"HMMSmart_PTPc,HMMPfam_Y_phosphatase,superfamily_SSF52799,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPN5	84867	genome.wustl.edu	36	11	18716018	18716018	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18716018	18716018	T	C	SNP	PTPN5	NM_006906	human	genbank	54_36p	-1	validated	missense	c.985	p.K329E	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
NAV2	89797	genome.wustl.edu	36	11	20075774	20075774	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	20075774	20075774	G	C	SNP	NAV2	NM_182964	human	genbank	54_36p	1	validated	missense	c.6265	p.E2089Q	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
DBX1	120237	genome.wustl.edu	36	11	20138083	20138083	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	20138083	20138083	T	C	SNP	DBX1	NM_001029865	human	genbank	54_36p	-1	inferred	missense	c.364	p.T122A	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
LOC645490	645490	genome.wustl.edu	36	11	20552850	20552851	+	Missense_Mutation	DNP	GG	TC	TC	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	GG	GG	TC	TC	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	20552850	20552851	GG	TC	DNP	LOC645490	XM_928515	human	genbank	54_36p	1	model	missense	c.325_326	p.G109S	1.000:1.000	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	"HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box"	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22337568	22337569	+	Silent	DNP	CC	CC	AT	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	CC	CC	CC	AT	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	22337568	22337569	CC	AT	DNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	silent	c.492_493	p.STLN163	1.000:1.000	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22354124	22354124	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	22354124	22354124	C	A	SNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	missense	c.1195	p.L399M	0.93	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22354787	22354787	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	22354787	22354787	A	G	SNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	missense	c.1406	p.K469R	1	superfamily_MFS_gen_substrate_transporter	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
TRPM5	29850	genome.wustl.edu	36	11	2389468	2389468	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	2389468	2389468	G	C	SNP	TRPM5	NM_014555	human	genbank	54_36p	-1	validated	silent	c.2580	p.G860	0.99	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
KCNQ1	3784	genome.wustl.edu	36	11	2561263	2561263	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	2561263	2561263	A	T	SNP	KCNQ1	NM_000218	human	genbank	54_36p	1	reviewed	missense	c.944	p.Y315F	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
SLC5A12	159963	genome.wustl.edu	36	11	26651643	26651643	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	26651643	26651643	C	T	SNP	SLC5A12	NM_178498	human	genbank	54_36p	-1	validated	missense	c.1589	p.R530K	0	NULL	HMMPfam_SSF	-	no_errors
KIF18A	81930	genome.wustl.edu	36	11	28014590	28014590	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	28014590	28014590	T	A	SNP	KIF18A	NM_031217	human	genbank	54_36p	-1	validated	missense	c.2146	p.N716Y	0	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
NAP1L4	4676	genome.wustl.edu	36	11	2937577	2937577	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	2937577	2937577	C	T	SNP	NAP1L4	NM_005969	human	genbank	54_36p	-1	reviewed	missense	c.745	p.G249R	1	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
CARS	833	genome.wustl.edu	36	11	2995080	2995080	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	2995080	2995080	T	A	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	silent	c.1749	p.A583	0.86	NULL	"superfamily_SSF52374,HMMPfam_tRNA-synt_1e"	-	no_errors
KCNA4	3739	genome.wustl.edu	36	11	29989393	29989393	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	29989393	29989393	G	T	SNP	KCNA4	NM_002233	human	genbank	54_36p	-1	reviewed	missense	c.1409	p.T470N	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"HMMPfam_K_channel_TID,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CARS	833	genome.wustl.edu	36	11	3004584	3004584	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	3004584	3004584	C	G	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.V351L	1	"HMMPfam_tRNA-synt_1e,superfamily_SSF52374"	"HMMPfam_tRNA-synt_1e,superfamily_SSF52374"	-	no_errors
FSHB	2488	genome.wustl.edu	36	11	30211747	30211747	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	30211747	30211747	A	G	SNP	FSHB	NM_000510	human	genbank	54_36p	1	reviewed	missense	c.214	p.K72E	1	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501"	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2"	-	no_errors
FSHB	2488	genome.wustl.edu	36	11	30211794	30211794	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	30211794	30211794	T	C	SNP	FSHB	NM_000510	human	genbank	54_36p	1	reviewed	silent	c.261	p.H87	0.19	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501"	"HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_SSF57501"	-	no_errors
CCDC73	493860	genome.wustl.edu	36	11	32592805	32592805	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	32592805	32592805	T	G	SNP	CCDC73	NM_001008391	human	genbank	54_36p	-1	validated	silent	c.1635	p.I545	0.58	NULL	NULL	-	no_errors
QSER1	79832	genome.wustl.edu	36	11	32954531	32954531	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	32954531	32954531	T	C	SNP	QSER1	NM_001076786	human	genbank	54_36p	1	provisional	missense	c.5143	p.W1715R	1	NULL	NULL	-	no_errors
HIPK3	10114	genome.wustl.edu	36	11	33315267	33315268	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	GA	GA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	33315267	33315268	GA	TT	DNP	HIPK3	NM_005734	human	genbank	54_36p	1	validated	missense	c.1292_1293	p.R431I	1.000:1.000	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CAPRIN1	4076	genome.wustl.edu	36	11	34054722	34054722	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	34054722	34054722	G	T	SNP	CAPRIN1	NM_005898	human	genbank	54_36p	1	validated	missense	c.645	p.W215C	1	NULL	NULL	-	no_errors
CAT	847	genome.wustl.edu	36	11	34427407	34427407	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	34427407	34427407	G	A	SNP	CAT	NM_001752	human	genbank	54_36p	1	validated	silent	c.159	p.Q53	1	"superfamily_Catalase_N,HMMPfam_Catalase"	"superfamily_Catalase_N,HMMPfam_Catalase,PatternScan_CATALASE_2,PatternScan_CATALASE_1,HMMPfam_Catalase-rel"	-	no_errors
SLC1A2	6506	genome.wustl.edu	36	11	35265049	35265055	+	Frame_Shift_Del	DEL	GAAAGGT	GAAAGGT	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GAAAGGT	GAAAGGT	GAAAGGT	-	GAAAGGT	GAAAGGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35265049	35265055	GAAAGGT	-	DEL	SLC1A2	NM_004171	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1117_1111	p.T371fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	"(deletion:cds_exon[35264880,35265074])"	no_errors
SLC1A2	6506	genome.wustl.edu	36	11	35290516	35290516	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35290516	35290516	C	A	SNP	SLC1A2	NM_004171	human	genbank	54_36p	-1	reviewed	silent	c.366	p.V122	1	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35410599	35410599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35410599	35410599	G	A	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	missense	c.2095	p.R699C	0.08	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"HMMSmart_EGF,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	-	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35452801	35452801	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35452801	35452801	G	C	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	missense	c.447	p.H149Q	1	"HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB"	"HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMPfam_EGF,HMMSmart_EGF,superfamily_Pept_Ser_Cys,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,superfamily_SSF57196"	-	no_errors
PRR5L	79899	genome.wustl.edu	36	11	36397401	36397401	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	36397401	36397401	T	A	SNP	FLJ14213	NM_024841	human	genbank	54_36p	1	provisional	missense	c.266	p.L89H	1	HMMPfam_HbrB	HMMPfam_HbrB	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40092681	40092681	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	40092681	40092681	G	C	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	missense	c.1738	p.P580A	1	NULL	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40092829	40092829	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	40092829	40092829	A	T	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	silent	c.1590	p.I530	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40094160	40094160	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	40094160	40094160	G	C	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	missense	c.259	p.Q87E	1	"HMMSmart_SM00369,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
TTC17	55761	genome.wustl.edu	36	11	43422283	43422283	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	43422283	43422283	C	G	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	nonsense	c.2613	p.Y871*	0.95	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
TRIM21	6737	genome.wustl.edu	36	11	4363210	4363210	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4363210	4363210	C	T	SNP	TRIM21	NM_003141	human	genbank	54_36p	-1	reviewed	missense	c.1309	p.A437T	0.45	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
TRIM21	6737	genome.wustl.edu	36	11	4366267	4366267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4366267	4366267	C	G	SNP	TRIM21	NM_003141	human	genbank	54_36p	-1	reviewed	missense	c.574	p.E192Q	0.98	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
TP53I11	9537	genome.wustl.edu	36	11	44913053	44913053	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	44913053	44913053	A	C	SNP	TP53I11	NM_001076787	human	genbank	54_36p	-1	validated	missense	c.528	p.I176M	1	NULL	NULL	-	no_errors
SYT13	57586	genome.wustl.edu	36	11	45230638	45230638	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	45230638	45230638	G	C	SNP	SYT13	NM_020826	human	genbank	54_36p	-1	validated	missense	c.756	p.H252Q	0.99	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00239"	-	no_errors
C11orf40	143501	genome.wustl.edu	36	11	4551264	4551264	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4551264	4551264	A	G	SNP	C11orf40	NM_144663	human	genbank	54_36p	-1	predicted	silent	c.156	p.N52	0	NULL	NULL	-	no_errors
PEX16	9409	genome.wustl.edu	36	11	45892454	45892454	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	45892454	45892454	G	A	SNP	PEX16	NM_057174	human	genbank	54_36p	-1	reviewed	missense	c.683	p.P228L	1	HMMPfam_Pex16	HMMPfam_Pex16	-	no_errors
GYLTL1B	120071	genome.wustl.edu	36	11	45904852	45904852	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	45904852	45904852	G	A	SNP	GYLTL1B	NM_152312	human	genbank	54_36p	1	validated	silent	c.1179	p.L393	1	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	-	no_errors
CREB3L1	90993	genome.wustl.edu	36	11	46289268	46289268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46289268	46289268	G	A	SNP	CREB3L1	ENST00000288400	human	ensembl	54_36p	1	known	silent	c.705	p.A235	0.67	NULL	"superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
CREB3L1	90993	genome.wustl.edu	36	11	46294513	46294513	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46294513	46294513	G	T	SNP	CREB3L1	ENST00000288400	human	ensembl	54_36p	1	known	splice_site	c.1131+1	e9+1	1	-	-	-	no_errors
OR51E2	81285	genome.wustl.edu	36	11	4659616	4659616	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4659616	4659616	C	A	SNP	OR51E2	NM_030774	human	genbank	54_36p	-1	validated	missense	c.902	p.R301L	0.14	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
F2	2147	genome.wustl.edu	36	11	46704017	46704017	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46704017	46704017	C	T	SNP	F2	NM_000506	human	genbank	54_36p	1	reviewed	missense	c.592	p.R198C	0.02	superfamily_Kringle-like	###############################################################################################################################################################################################################################################################	-	no_errors
CKAP5	9793	genome.wustl.edu	36	11	46775067	46775067	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46775067	46775067	C	T	SNP	CKAP5	NM_001008938	human	genbank	54_36p	-1	validated	splice_site	c.1339-1	e11-1	1	-	-	-	no_errors
ACP2	53	genome.wustl.edu	36	11	47223461	47223461	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47223461	47223461	A	G	SNP	ACP2	NM_001610	human	genbank	54_36p	-1	reviewed	missense	c.610	p.W204R	1	"HMMPfam_Acid_phosphat_A,superfamily_SSF53254"	"HMMPfam_Acid_phosphat_A,superfamily_SSF53254,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2"	-	no_errors
NR1H3	10062	genome.wustl.edu	36	11	47246815	47246815	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47246815	47246815	C	T	SNP	NR1H3	NM_005693	human	genbank	54_36p	1	validated	missense	c.1336	p.H446Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MADD	8567	genome.wustl.edu	36	11	47267100	47267100	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47267100	47267100	G	A	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.2659	p.G887R	1	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN"	-	no_errors
MADD	8567	genome.wustl.edu	36	11	47289962	47289962	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47289962	47289962	C	T	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.4262	p.A1421V	0.92	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800"	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47398461	47398461	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47398461	47398461	C	A	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	nonsense	c.1057	p.E353*	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47401073	47401073	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47401073	47401073	T	G	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	missense	c.619	p.N207H	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47402214	47402214	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47402214	47402214	G	A	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	nonsense	c.550	p.Q184*	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CELF1	10658	genome.wustl.edu	36	11	47464899	47464899	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47464899	47464899	C	G	SNP	CUGBP1	NM_001025596	human	genbank	54_36p	-1	reviewed	missense	c.289	p.A97P	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
KBTBD4	55709	genome.wustl.edu	36	11	47553810	47553810	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47553810	47553810	G	T	SNP	KBTBD4	NM_016506	human	genbank	54_36p	-1	validated	missense	c.607	p.Q203K	1	HMMPfam_BACK	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_Kelch_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1"	-	no_errors
AGBL2	79841	genome.wustl.edu	36	11	47638436	47638436	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47638436	47638436	C	G	SNP	AGBL2	NM_024783	human	genbank	54_36p	-1	validated	missense	c.2574	p.K858N	0.08	NULL	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	-	no_errors
NUP160	23279	genome.wustl.edu	36	11	47786597	47786597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47786597	47786597	G	A	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.2302	p.P768S	0.98	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
NUP160	23279	genome.wustl.edu	36	11	47826422	47826422	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47826422	47826422	G	A	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.127	p.R43W	0.57	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
OR4S1	256148	genome.wustl.edu	36	11	48285216	48285216	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48285216	48285216	A	T	SNP	OR4S1	NM_001004725	human	genbank	54_36p	1	provisional	missense	c.866	p.N289I	0.33	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51T1	401665	genome.wustl.edu	36	11	4860452	4860452	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4860452	4860452	A	C	SNP	OR51T1	NM_001004759	human	genbank	54_36p	1	provisional	silent	c.828	p.A276	0.24	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51A7	119687	genome.wustl.edu	36	11	4885418	4885418	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4885418	4885418	G	A	SNP	OR51A7	NM_001004749	human	genbank	54_36p	1	provisional	missense	c.243	p.M81I	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LOC120824	120824	genome.wustl.edu	36	11	48953697	48953697	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48953697	48953697	G	A	SNP	LOC120824	XM_062300	human	genbank	54_36p	-1	model	silent	c.1288	p.L430	0.71	HMMPfam_SPRY	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY"	-	no_errors
LOC340970	340970	genome.wustl.edu	36	11	48963952	48963952	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48963952	48963952	A	G	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC340970	340970	genome.wustl.edu	36	11	48965650	48965650	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48965650	48965650	G	T	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC283116	283116	genome.wustl.edu	36	11	49009893	49009893	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49009893	49009893	A	C	SNP	LOC283116	XM_208043	human	genbank	54_36p	1	model	missense	c.166	p.T56P	0.65	superfamily_SSF57850	"PatternScan_ZF_RING_1,superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY"	-	no_errors
OR51G1	79324	genome.wustl.edu	36	11	4901325	4901325	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4901325	4901325	A	G	SNP	OR51G1	NM_001005237	human	genbank	54_36p	-1	provisional	missense	c.821	p.V274A	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LOC283116	283116	genome.wustl.edu	36	11	49016060	49016060	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49016060	49016060	T	C	SNP	LOC283116	XM_208043	human	genbank	54_36p	1	model	silent	c.1314	p.S438	0.09	HMMPfam_SPRY	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
OR51A4	401666	genome.wustl.edu	36	11	4924258	4924258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4924258	4924258	C	A	SNP	OR51A4	NM_001005329	human	genbank	54_36p	-1	provisional	missense	c.649	p.V217L	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51A4	401666	genome.wustl.edu	36	11	4924365	4924365	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4924365	4924365	C	T	SNP	OR51A4	NM_001005329	human	genbank	54_36p	-1	provisional	missense	c.542	p.C181Y	0.99	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC729960	729960	genome.wustl.edu	36	11	49348473	49348473	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49348473	49348473	T	A	SNP	LOC729960	XR_016034	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC387770	387770	genome.wustl.edu	36	11	49850158	49850158	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49850158	49850158	A	T	SNP	LOC387770	XR_017307	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
OR4C12	283093	genome.wustl.edu	36	11	49960414	49960414	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49960414	49960414	A	G	SNP	OR4C12	NM_001005270	human	genbank	54_36p	-1	provisional	missense	c.200	p.I67T	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR52A1	23538	genome.wustl.edu	36	11	5129570	5129570	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5129570	5129570	A	G	SNP	OR52A1	NM_012375	human	genbank	54_36p	-1	validated	silent	c.606	p.G202	0.03	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4C46	119749	genome.wustl.edu	36	11	51372438	51372438	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	51372438	51372438	A	T	SNP	OR4C46	NM_001004703	human	genbank	54_36p	1	provisional	missense	c.581	p.E194V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR51B2	79345	genome.wustl.edu	36	11	5301582	5301582	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5301582	5301582	A	C	SNP	OR51B2	NM_033180	human	genbank	54_36p	-1	validated	silent	c.522	p.R174	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR51I2	390064	genome.wustl.edu	36	11	5432027	5432027	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5432027	5432027	A	G	SNP	OR51I2	NM_001004754	human	genbank	54_36p	1	provisional	missense	c.733	p.I245V	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
UBQLN3	50613	genome.wustl.edu	36	11	5486713	5486713	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5486713	5486713	G	A	SNP	UBQLN3	NM_017481	human	genbank	54_36p	-1	reviewed	missense	c.652	p.R218W	1	HMMSmart_STI1	"PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,HMMPfam_UBA"	-	no_errors
OR4C16	219428	genome.wustl.edu	36	11	55096435	55096435	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55096435	55096435	A	T	SNP	OR4C16	NM_001004701	human	genbank	54_36p	1	validated	nonsense	c.256	p.K86*	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52H1	390067	genome.wustl.edu	36	11	5523114	5523114	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5523114	5523114	G	C	SNP	OR52H1	NM_001005289	human	genbank	54_36p	-1	provisional	silent	c.216	p.S72	0.96	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR5D14	219436	genome.wustl.edu	36	11	55319848	55319848	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55319848	55319848	C	A	SNP	OR5D14	NM_001004735	human	genbank	54_36p	1	provisional	missense	c.241	p.P81T	0.64	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5D18	219438	genome.wustl.edu	36	11	55343867	55343867	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55343867	55343867	T	G	SNP	OR5D18	NM_001001952	human	genbank	54_36p	1	provisional	missense	c.186	p.F62L	0.96	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55362906	55362906	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55362906	55362906	G	C	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.103	p.A35P	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55363647	55363647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55363647	55363647	G	A	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.844	p.V282M	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
SPRYD5	84767	genome.wustl.edu	36	11	55409881	55409881	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55409881	55409881	A	T	SNP	SPRYD5	ENST00000327733	human	ensembl	54_36p	1	known	missense	c.422	p.E141V	0.95	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY"	-	no_start_codon
OR5I1	10798	genome.wustl.edu	36	11	55459861	55459861	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55459861	55459861	C	T	SNP	OR5I1	NM_006637	human	genbank	54_36p	-1	reviewed	missense	c.592	p.E198K	0.8	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5I1	10798	genome.wustl.edu	36	11	55460276	55460276	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	55460276	55460276	G	A	SNP	OR5I1	NM_006637	human	genbank	54_36p	-1	reviewed	silent	c.177	p.T59	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR10AG1	282770	genome.wustl.edu	36	11	55491934	55491934	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	55491934	55491934	C	T	SNP	OR10AG1	NM_001005491	human	genbank	54_36p	-1	provisional	silent	c.582	p.A194	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5AS1	219447	genome.wustl.edu	36	11	55555264	55555264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55555264	55555264	G	C	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	1	provisional	missense	c.794	p.S265T	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5AS1	219447	genome.wustl.edu	36	11	55555307	55555307	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55555307	55555307	T	G	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	1	provisional	silent	c.837	p.T279	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8H2	390151	genome.wustl.edu	36	11	55629539	55629539	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55629539	55629539	T	G	SNP	OR8H2	NM_001005200	human	genbank	54_36p	1	provisional	missense	c.445	p.Y149D	0.4	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8H3	390152	genome.wustl.edu	36	11	55646944	55646944	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55646944	55646944	A	T	SNP	OR8H3	NM_001005201	human	genbank	54_36p	1	provisional	missense	c.520	p.I174F	0.52	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5T2	219464	genome.wustl.edu	36	11	55756971	55756971	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55756971	55756971	A	G	SNP	OR5T2	NM_001004746	human	genbank	54_36p	-1	provisional	silent	c.267	p.I89	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5T1	390155	genome.wustl.edu	36	11	55800327	55800327	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55800327	55800327	T	C	SNP	OR5T1	NM_001004745	human	genbank	54_36p	1	provisional	missense	c.637	p.Y213H	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8K3	219473	genome.wustl.edu	36	11	55842832	55842832	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55842832	55842832	A	T	SNP	OR8K3	NM_001005202	human	genbank	54_36p	1	provisional	silent	c.474	p.L158	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8J1	219477	genome.wustl.edu	36	11	55884585	55884585	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55884585	55884585	A	C	SNP	OR8J1	NM_001005205	human	genbank	54_36p	1	provisional	missense	c.287	p.E96A	0.95	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8U1	219417	genome.wustl.edu	36	11	55899806	55899806	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55899806	55899806	G	A	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	missense	c.131	p.G44D	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8U1	219417	genome.wustl.edu	36	11	55899999	55899999	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55899999	55899999	G	T	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	missense	c.324	p.M108I	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8U1	219417	genome.wustl.edu	36	11	55900385	55900385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55900385	55900385	C	A	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	missense	c.710	p.A237D	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5R1	219479	genome.wustl.edu	36	11	55941420	55941420	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55941420	55941420	T	A	SNP	OR5R1	NM_001004744	human	genbank	54_36p	-1	provisional	missense	c.865	p.I289F	0.91	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5M3	219482	genome.wustl.edu	36	11	55994078	55994078	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55994078	55994078	T	C	SNP	OR5M3	NM_001004742	human	genbank	54_36p	-1	provisional	missense	c.472	p.T158A	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56136973	56136973	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56136973	56136973	G	C	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	silent	c.582	p.V194	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56137236	56137236	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56137236	56137236	G	A	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	silent	c.319	p.L107	0.29	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5AK2	390181	genome.wustl.edu	36	11	56513550	56513550	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56513550	56513550	A	G	SNP	OR5AK2	NM_001005323	human	genbank	54_36p	1	provisional	missense	c.586	p.I196V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5AK2	390181	genome.wustl.edu	36	11	56513893	56513893	+	Nonstop_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56513893	56513893	A	C	SNP	OR5AK2	NM_001005323	human	genbank	54_36p	1	provisional	nonstop	c.929	p.*310S	0	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
SMTNL1	219537	genome.wustl.edu	36	11	57067040	57067040	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57067040	57067040	G	T	SNP	SMTNL1	NM_001105565	human	genbank	54_36p	1	provisional	nonsense	c.403	p.E135*	0.12	NULL	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	-	no_errors
CTNND1	1500	genome.wustl.edu	36	11	57329980	57329980	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57329980	57329980	C	T	SNP	CTNND1	NM_001085458	human	genbank	54_36p	1	validated	silent	c.1773	p.H591	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
OR9Q2	219957	genome.wustl.edu	36	11	57714852	57714852	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57714852	57714852	C	A	SNP	OR9Q2	NM_001005283	human	genbank	54_36p	1	provisional	missense	c.314	p.T105N	0.34	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10Q1	219960	genome.wustl.edu	36	11	57752201	57752201	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57752201	57752201	C	T	SNP	OR10Q1	NM_001004471	human	genbank	54_36p	-1	provisional	silent	c.723	p.R241	0.42	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10Q1	219960	genome.wustl.edu	36	11	57752498	57752498	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57752498	57752498	G	A	SNP	OR10Q1	NM_001004471	human	genbank	54_36p	-1	provisional	silent	c.426	p.R142	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5B2	390190	genome.wustl.edu	36	11	57946621	57946621	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57946621	57946621	C	T	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	silent	c.690	p.K230	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031608	58031608	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58031608	58031608	G	C	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	missense	c.547	p.L183V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031744	58031744	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58031744	58031744	A	G	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	silent	c.411	p.G137	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031919	58031919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58031919	58031919	G	A	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	missense	c.236	p.T79M	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
GLYATL2	219970	genome.wustl.edu	36	11	58361162	58361162	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58361162	58361162	A	T	SNP	GLYATL2	NM_145016	human	genbank	54_36p	-1	validated	missense	c.378	p.D126E	0	"HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)"	"HMMPfam_Gly_acyl_tr_C,HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
GLYATL1	92292	genome.wustl.edu	36	11	58467706	58467706	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58467706	58467706	A	C	SNP	GLYATL1	NM_080661	human	genbank	54_36p	1	provisional	silent	c.139	p.R47	0	HMMPfam_Gly_acyl_tr_N	"HMMPfam_Gly_acyl_tr_N,superfamily_Acyl_CoA_acyltransferase,HMMPfam_Gly_acyl_tr_C"	-	no_errors
OR52E4	390081	genome.wustl.edu	36	11	5862102	5862102	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5862102	5862102	C	T	SNP	OR52E4	NM_001005165	human	genbank	54_36p	1	provisional	missense	c.4	p.P2S	0.17	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FAM111B	374393	genome.wustl.edu	36	11	58649138	58649138	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58649138	58649138	G	A	SNP	FAM111B	NM_198947	human	genbank	54_36p	1	validated	missense	c.992	p.S331N	0	NULL	superfamily_Trypsin-like serine proteases	-	no_errors
FAM111A	63901	genome.wustl.edu	36	11	58676814	58676814	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58676814	58676814	C	G	SNP	FAM111A	NM_022074	human	genbank	54_36p	1	validated	missense	c.1097	p.T366S	0.03	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys	-	no_errors
FAM111A	63901	genome.wustl.edu	36	11	58676910	58676910	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58676910	58676910	G	C	SNP	FAM111A	NM_022074	human	genbank	54_36p	1	validated	missense	c.1193	p.S398T	0	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys	-	no_errors
MPEG1	219972	genome.wustl.edu	36	11	58735419	58735419	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58735419	58735419	G	C	SNP	MPEG1	NM_001039396	human	genbank	54_36p	-1	validated	missense	c.1496	p.A499G	0.17	NULL	"PatternScan_MAC_PERFORIN,HMMPfam_MACPF,HMMSmart_MACPF"	-	no_errors
OR4D6	219983	genome.wustl.edu	36	11	58981869	58981869	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58981869	58981869	A	C	SNP	OR4D6	NM_001004708	human	genbank	54_36p	1	provisional	missense	c.860	p.Y287S	0.99	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4D10	390197	genome.wustl.edu	36	11	59001705	59001705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59001705	59001705	T	C	SNP	OR4D10	NM_001004705	human	genbank	54_36p	1	provisional	missense	c.227	p.I76T	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4D11	219986	genome.wustl.edu	36	11	59028161	59028161	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59028161	59028161	C	T	SNP	OR4D11	NM_001004706	human	genbank	54_36p	1	provisional	silent	c.537	p.C179	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
PATL1	219988	genome.wustl.edu	36	11	59179634	59179634	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59179634	59179634	G	C	SNP	PATL1	NM_152716	human	genbank	54_36p	-1	validated	silent	c.540	p.P180	0.91	HMMPfam_PAT1	HMMPfam_PAT1	-	no_errors
STX3	6809	genome.wustl.edu	36	11	59317198	59317198	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59317198	59317198	A	G	SNP	STX3	NM_004177	human	genbank	54_36p	1	provisional	missense	c.517	p.N173D	1	superfamily_t-snare proteins	"HMMSmart_SM00503,superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
GIF	2694	genome.wustl.edu	36	11	59366546	59366546	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59366546	59366546	T	A	SNP	GIF	NM_005142	human	genbank	54_36p	-1	reviewed	missense	c.457	p.I153L	0.01	HMMPfam_Cobalamin_bind	"HMMPfam_Cobalamin_bind,PatternScan_COBALAMIN_BINDING"	-	no_errors
PLAC1L	219990	genome.wustl.edu	36	11	59567597	59567597	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59567597	59567597	G	A	SNP	PLAC1L	NM_173801	human	genbank	54_36p	1	provisional	silent	c.144	p.A48	0.52	NULL	NULL	-	no_errors
MS4A2	2206	genome.wustl.edu	36	11	59619683	59619683	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59619683	59619683	T	C	SNP	MS4A2	NM_000139	human	genbank	54_36p	1	reviewed	missense	c.713	p.M238T	0	NULL	HMMPfam_CD20	-	no_errors
LOC643680	643680	genome.wustl.edu	36	11	59753973	59753973	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59753973	59753973	G	A	SNP	LOC643680	XM_931901	human	genbank	54_36p	-1	model	missense	c.59	p.P20L	0.47	NULL	HMMPfam_CD20	-	no_errors
MS4A7	58475	genome.wustl.edu	36	11	59917859	59917859	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59917859	59917859	A	T	SNP	MS4A7	NM_021201	human	genbank	54_36p	1	reviewed	silent	c.672	p.S224	0.01	NULL	HMMPfam_CD20	-	no_errors
MS4A1	931	genome.wustl.edu	36	11	59986428	59986428	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59986428	59986428	C	A	SNP	MS4A1	NM_021950	human	genbank	54_36p	1	reviewed	missense	c.5	p.T2K	0.98	NULL	HMMPfam_CD20	-	no_errors
MS4A1	931	genome.wustl.edu	36	11	59987071	59987071	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59987071	59987071	G	T	SNP	MS4A1	NM_021950	human	genbank	54_36p	1	reviewed	silent	c.180	p.G60	1	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
OR56A1	120796	genome.wustl.edu	36	11	6005123	6005123	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6005123	6005123	A	C	SNP	OR56A1	NM_001001917	human	genbank	54_36p	-1	provisional	missense	c.388	p.Y130D	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
MS4A15	219995	genome.wustl.edu	36	11	60287962	60287962	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60287962	60287962	G	T	SNP	MS4A15	NM_001098835	human	genbank	54_36p	1	validated	missense	c.180	p.L60F	0	NULL	"HMMPfam_CD20,PatternScan_IG_MHC"	-	no_errors
MS4A10	341116	genome.wustl.edu	36	11	60316331	60316331	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60316331	60316331	C	A	SNP	MS4A10	NM_206893	human	genbank	54_36p	1	validated	silent	c.321	p.I107	0.15	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
GPR44	11251	genome.wustl.edu	36	11	60377379	60377379	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60377379	60377379	C	A	SNP	GPR44	NM_004778	human	genbank	54_36p	-1	validated	silent	c.393	p.L131	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PGA3	643834	genome.wustl.edu	36	11	60728299	60728299	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60728299	60728299	C	A	SNP	PGA3	NM_001079807	human	genbank	54_36p	1	validated	silent	c.201	p.P67	0.19	superfamily_Acid proteases	"superfamily_Acid proteases,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
VWCE	220001	genome.wustl.edu	36	11	60798568	60798568	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60798568	60798568	C	T	SNP	VWCE	NM_152718	human	genbank	54_36p	-1	validated	silent	c.1560	p.E520	0.96	"HMMSmart_SM00215,HMMPfam_VWC,HMMSmart_SM00214"	###############################################################################################################################################################################################################################################################	-	no_errors
DDB1	1642	genome.wustl.edu	36	11	60835831	60835832	+	Splice_Site	DNP	CC	CC	AA	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	CC	CC	CC	AA	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60835831	60835832	CC	AA	DNP	DDB1	NM_001923	human	genbank	54_36p	-1	validated	splice_site	c.2277+2_2277+1	e19-1	1.000:1.000	-	-	-	no_errors
SDHAF2	54949	genome.wustl.edu	36	11	60962141	60962141	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60962141	60962141	A	G	SNP	C11orf79	NM_017841	human	genbank	54_36p	1	predicted	missense	c.350	p.D117G	1	"superfamily_DUF339,HMMPfam_DUF339"	"superfamily_DUF339,HMMPfam_DUF339"	-	no_errors
C11orf66	220004	genome.wustl.edu	36	11	61011203	61011203	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61011203	61011203	G	C	SNP	C11orf66	NM_145017	human	genbank	54_36p	1	provisional	missense	c.958	p.G320R	1	NULL	NULL	-	no_errors
RPLP0P2	113157	genome.wustl.edu	36	11	61161394	61161394	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61161394	61161394	G	A	SNP	RPLP0P2	NR_002775	human	genbank	54_36p	1	inferred	rna	NULL	NULL	1	-	-	-	pseudogene
DAGLA	747	genome.wustl.edu	36	11	61265376	61265376	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61265376	61265376	A	C	SNP	DAGLA	NM_006133	human	genbank	54_36p	1	validated	missense	c.2150	p.D717A	0.99	NULL	"superfamily_SSF53474,HMMPfam_Lipase_3,PatternScan_LIPASE_SER"	-	no_errors
DAGLA	747	genome.wustl.edu	36	11	61267804	61267804	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61267804	61267804	G	C	SNP	DAGLA	NM_006133	human	genbank	54_36p	1	validated	missense	c.2396	p.G799A	1	NULL	"HMMPfam_Lipase_3,PatternScan_LIPASE_SER,superfamily_SSF53474"	-	no_errors
FEN1	2237	genome.wustl.edu	36	11	61320362	61320362	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61320362	61320362	A	T	SNP	FEN1	NM_004111	human	genbank	54_36p	1	reviewed	missense	c.953	p.E318V	1	superfamily_5' to 3' exonuclease C-terminal subdomain	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
SCGB2A2	4250	genome.wustl.edu	36	11	61794293	61794293	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61794293	61794293	C	T	SNP	SCGB2A2	NM_002411	human	genbank	54_36p	1	provisional	missense	c.29	p.A10V	0.01	HMMPfam_Uteroglobin	"HMMPfam_Uteroglobin,superfamily_Uteroglobin-like"	-	no_errors
C11orf42	160298	genome.wustl.edu	36	11	6188395	6188395	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6188395	6188395	C	A	SNP	C11orf42	NM_173525	human	genbank	54_36p	1	predicted	missense	c.812	p.P271H	0.99	NULL	NULL	-	no_errors
FAM160A2	84067	genome.wustl.edu	36	11	6195620	6195620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	6195620	6195620	C	T	SNP	FAM160A2	NM_032127	human	genbank	54_36p	-1	validated	missense	c.1814	p.R605Q	1	NULL	HMMPfam_RAI16-like	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62041703	62041703	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62041703	62041703	A	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.16762	p.L5588V	0	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62050359	62050359	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62050359	62050359	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.8106	p.I2702M	0.4	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62052072	62052072	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	62052072	62052072	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	silent	c.6393	p.V2131	0.69	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
EEF1G	1937	genome.wustl.edu	36	11	62097881	62097881	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	62097881	62097881	C	A	SNP	EEF1G	NM_001404	human	genbank	54_36p	-1	reviewed	missense	c.10	p.G4W	1	"HMMPfam_GST_N,superfamily_Thioredoxin-like"	"HMMPfam_GST_N,superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C,HMMPfam_EF1G,superfamily_eEF1-gamma domain"	-	no_errors
ROM1	6094	genome.wustl.edu	36	11	62137886	62137886	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62137886	62137886	G	A	SNP	ROM1	NM_000327	human	genbank	54_36p	1	reviewed	missense	c.557	p.R186H	1	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1"	-	no_errors
GANAB	23193	genome.wustl.edu	36	11	62163677	62163677	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62163677	62163677	G	A	SNP	GANAB	NM_198335	human	genbank	54_36p	-1	validated	silent	c.141	p.C47	1	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2"	-	no_errors
TTC9C	283237	genome.wustl.edu	36	11	62253040	62253040	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62253040	62253040	G	T	SNP	TTC9C	NM_173810	human	genbank	54_36p	1	provisional	silent	c.144	p.P48	0	superfamily_TPR-like	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2"	-	no_errors
CCKBR	887	genome.wustl.edu	36	11	6248984	6248984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6248984	6248984	G	C	SNP	CCKBR	NM_176875	human	genbank	54_36p	1	reviewed	missense	c.979	p.A327P	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SLC22A8	9376	genome.wustl.edu	36	11	62523831	62523831	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62523831	62523831	C	G	SNP	SLC22A8	NM_004254	human	genbank	54_36p	-1	reviewed	missense	c.497	p.G166A	0	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC22A25	387601	genome.wustl.edu	36	11	62688035	62688035	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62688035	62688035	C	T	SNP	SLC22A25	NM_199352	human	genbank	54_36p	-1	validated	missense	c.1481	p.R494Q	0	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC22A25	387601	genome.wustl.edu	36	11	62753695	62753695	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62753695	62753695	G	A	SNP	SLC22A25	NM_199352	human	genbank	54_36p	-1	validated	silent	c.6	p.A2	0.92	NULL	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
LGALS12	85329	genome.wustl.edu	36	11	63039744	63039744	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63039744	63039744	C	T	SNP	LGALS12	NM_033101	human	genbank	54_36p	1	validated	missense	c.847	p.P283S	0.98	"HMMPfam_Gal-bind_lectin,superfamily_Concanavalin A-like lectins/glucanases"	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin"	-	no_errors
RARRES3	5920	genome.wustl.edu	36	11	63063575	63063575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63063575	63063575	G	T	SNP	RARRES3	NM_004585	human	genbank	54_36p	1	validated	missense	c.21	p.E7D	0	NULL	HMMPfam_NC	-	no_errors
PLA2G16	11145	genome.wustl.edu	36	11	63114251	63114251	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63114251	63114251	C	T	SNP	PLA2G16	NM_007069	human	genbank	54_36p	-1	validated	missense	c.284	p.R95Q	0.98	HMMPfam_NC	HMMPfam_NC	-	no_errors
RTN3	10313	genome.wustl.edu	36	11	63280187	63280187	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63280187	63280187	G	A	SNP	RTN3	NM_201428	human	genbank	54_36p	1	validated	missense	c.2965	p.A989T	0.66	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
MARK2	2011	genome.wustl.edu	36	11	63423980	63423980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63423980	63423980	G	A	SNP	MARK2	NM_017490	human	genbank	54_36p	1	reviewed	missense	c.491	p.S164N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Kinase associated domain 1 KA1,HMMPfam_KA1"	-	no_errors
STIP1	10963	genome.wustl.edu	36	11	63718248	63718248	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63718248	63718248	A	G	SNP	STIP1	NM_006819	human	genbank	54_36p	1	validated	silent	c.231	p.R77	0.77	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMSmart_STI1"	-	no_errors
FERMT3	83706	genome.wustl.edu	36	11	63745130	63745130	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63745130	63745130	C	T	SNP	FERMT3	NM_178443	human	genbank	54_36p	1	validated	missense	c.1624	p.R542C	1	"HMMSmart_SM00295,HMMPfam_FERM_M,superfamily_Second domain of FERM,PatternScan_FERM_2"	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,PatternScan_FERM_2"	-	no_errors
PLCB3	5331	genome.wustl.edu	36	11	63786536	63786536	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63786536	63786536	G	A	SNP	PLCB3	NM_000932	human	genbank	54_36p	1	provisional	missense	c.2120	p.R707Q	1	superfamily_PLC-like phosphodiesterases	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63868078	63868078	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63868078	63868078	G	C	SNP	CCDC88B	NM_032251	human	genbank	54_36p	1	validated	missense	c.1489	p.V497L	0	NULL	NULL	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63876809	63876809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63876809	63876809	C	T	SNP	CCDC88B	NM_032251	human	genbank	54_36p	1	validated	missense	c.3374	p.A1125V	0.96	NULL	NULL	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63877766	63877766	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63877766	63877766	C	G	SNP	CCDC88B	NM_032251	human	genbank	54_36p	1	validated	missense	c.3837	p.D1279E	1	NULL	NULL	-	no_errors
RPS6KA4	8986	genome.wustl.edu	36	11	63885946	63885946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63885946	63885946	G	A	SNP	RPS6KA4	NM_003942	human	genbank	54_36p	1	reviewed	missense	c.802	p.V268M	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ODR_DC_2_1,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C"	-	no_errors
SLC22A11	55867	genome.wustl.edu	36	11	64080374	64080374	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64080374	64080374	C	T	SNP	SLC22A11	NM_018484	human	genbank	54_36p	1	reviewed	silent	c.327	p.D109	0.04	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC22A12	116085	genome.wustl.edu	36	11	64115725	64115747	+	Frame_Shift_Del	DEL	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	-	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	-	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64115725	64115747	TCGGCCGCCGTGCCCAGCCACCG	-	DEL	SLC22A12	NM_144585	human	genbank	54_36p	1	reviewed	frame_shift_del	c.121_143	p.S41fs	0.998:0.996:0.987:0.993:0.953:0.668:0.677:0.636:0.570:0.906:0.968:0.970:0.997:0.994:0.765:0.719:0.719:0.758:0.997:1.000:0.998:1.000:1.000	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"(deletion:cds_exon[64115605,64116006])"	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64146987	64146987	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64146987	64146987	G	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.3987	p.P1329	1	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294"	-	no_errors
ATG2A	23130	genome.wustl.edu	36	11	64436297	64436297	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64436297	64436297	T	A	SNP	ATG2A	NM_015104	human	genbank	54_36p	-1	provisional	missense	c.923	p.D308V	0.5	NULL	"PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC"	-	no_errors
BATF2	116071	genome.wustl.edu	36	11	64513696	64513696	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64513696	64513696	C	T	SNP	BATF2	NM_138456	human	genbank	54_36p	-1	validated	silent	c.306	p.Q102	0.03	NULL	"HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
SNX15	29907	genome.wustl.edu	36	11	64556496	64556496	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64556496	64556496	G	T	SNP	SNX15	NM_013306	human	genbank	54_36p	1	reviewed	silent	c.153	p.R51	1	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00745,HMMPfam_MIT"	-	no_errors
TM7SF2	7108	genome.wustl.edu	36	11	64637637	64637637	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64637637	64637637	G	C	SNP	TM7SF2	NM_003273	human	genbank	54_36p	1	validated	missense	c.598	p.G200R	1	HMMPfam_ERG4_ERG24	"HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2"	-	no_errors
SYVN1	84447	genome.wustl.edu	36	11	64653850	64653850	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64653850	64653850	G	A	SNP	SYVN1	NM_172230	human	genbank	54_36p	-1	reviewed	missense	c.1522	p.R508C	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
DNHD1	144132	genome.wustl.edu	36	11	6486753	6486753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6486753	6486753	G	C	SNP	DNHD1	NM_173589	human	genbank	54_36p	1	validated	missense	c.988	p.G330R	1	NULL	NULL	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65025006	65025006	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65025006	65025006	G	T	SNP	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65026678	65026678	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65026678	65026678	C	T	SNP	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65028263	65028264	+	RNA	INS	-	-	GA	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	-	-	-	GA	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65028263	65028264	-	GA	INS	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.996:1.000	-	-	-	no_errors
RELA	5970	genome.wustl.edu	36	11	65184219	65184219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65184219	65184219	C	G	SNP	RELA	NM_021975	human	genbank	54_36p	-1	validated	missense	c.379	p.E127Q	1	"superfamily_p53-like transcription factors,HMMPfam_RHD"	"superfamily_p53-like transcription factors,HMMPfam_RHD,PatternScan_REL_1,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	-	no_errors
FIBP	9158	genome.wustl.edu	36	11	65408520	65408520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65408520	65408520	C	T	SNP	FIBP	NM_198897	human	genbank	54_36p	-1	reviewed	missense	c.944	p.R315H	1	HMMPfam_FIBP	HMMPfam_FIBP	-	no_errors
SF3B2	10992	genome.wustl.edu	36	11	65585750	65585750	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65585750	65585750	A	G	SNP	SF3B2	NM_006842	human	genbank	54_36p	1	reviewed	silent	c.1797	p.T599	0.1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_DUF382,HMMSmart_SM00581,HMMPfam_PSP"	-	no_errors
PACS1	55690	genome.wustl.edu	36	11	65759368	65759368	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65759368	65759368	C	G	SNP	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	missense	c.2125	p.R709G	0.89	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
PELI3	246330	genome.wustl.edu	36	11	65997320	65997320	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65997320	65997320	C	T	SNP	PELI3	NM_145065	human	genbank	54_36p	1	validated	silent	c.489	p.F163	0.92	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
DPP3	10072	genome.wustl.edu	36	11	66028817	66028817	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66028817	66028817	T	G	SNP	DPP3	NM_005700	human	genbank	54_36p	1	reviewed	silent	c.2037	p.L679	0.97	HMMPfam_Peptidase_M49	HMMPfam_Peptidase_M49	-	no_errors
CCDC87	55231	genome.wustl.edu	36	11	66116813	66116813	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66116813	66116813	T	A	SNP	CCDC87	NM_018219	human	genbank	54_36p	-1	validated	missense	c.250	p.I84F	0.03	NULL	NULL	-	no_errors
RBM14	10432	genome.wustl.edu	36	11	66148264	66148264	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66148264	66148264	A	G	SNP	RBM14	NM_006328	human	genbank	54_36p	1	validated	missense	c.341	p.Y114C	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	-	no_errors
RBM14	10432	genome.wustl.edu	36	11	66150529	66150529	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66150529	66150529	A	C	SNP	RBM14	NM_006328	human	genbank	54_36p	1	validated	missense	c.1824	p.L608F	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
RBM4	5936	genome.wustl.edu	36	11	66168159	66168159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66168159	66168159	G	A	SNP	RBM4	NM_002896	human	genbank	54_36p	1	validated	missense	c.1075	p.A359T	1	NULL	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
RCE1	9986	genome.wustl.edu	36	11	66367857	66367858	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66367857	66367858	CA	-	DEL	RCE1	NM_005133	human	genbank	54_36p	1	reviewed	frame_shift_del	c.237_238	p.S82fs	1.000:1.000	NULL	HMMPfam_Abi	"(deletion:cds_exon[66367806,66367908])"	no_errors
PC	5091	genome.wustl.edu	36	11	66375126	66375126	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66375126	66375126	T	C	SNP	PC	NM_000920	human	genbank	54_36p	-1	reviewed	silent	c.2184	p.E728	0.81	"superfamily_SSF51569,HMMPfam_HMGL-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SYT12	91683	genome.wustl.edu	36	11	66567861	66567861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66567861	66567861	G	T	SNP	SYT12	NM_177963	human	genbank	54_36p	1	provisional	missense	c.798	p.Q266H	1	"superfamily_C2_CaLB,HMMSmart_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66774457	66774457	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	66774457	66774457	A	C	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.2380	p.I794L	1	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,PatternScan_2FE2S_FER_1,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66778962	66778962	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66778962	66778962	C	T	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.3349	p.R1117C	1	"HMMSmart_SM00367,superfamily_RNI-like"	"HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,PatternScan_2FE2S_FER_1,HMMSmart_SM00367,HMMPfam_JmjC,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,superfamily_RNI-like"	-	no_errors
TCIRG1	10312	genome.wustl.edu	36	11	67571713	67571713	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	67571713	67571713	C	A	SNP	TCIRG1	NM_006019	human	genbank	54_36p	1	reviewed	silent	c.1329	p.G443	1	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
SUV420H1	51111	genome.wustl.edu	36	11	67682106	67682106	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	67682106	67682106	C	A	SNP	SUV420H1	NM_017635	human	genbank	54_36p	-1	reviewed	missense	c.2283	p.K761N	1	NULL	"HMMPfam_SET,superfamily_SET domain,HMMSmart_SM00317"	-	no_errors
SUV420H1	51111	genome.wustl.edu	36	11	67682381	67682381	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	67682381	67682381	G	T	SNP	SUV420H1	NM_017635	human	genbank	54_36p	-1	reviewed	missense	c.2008	p.P670T	0.71	NULL	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
OR6A2	8590	genome.wustl.edu	36	11	6772872	6772872	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6772872	6772872	G	T	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	missense	c.644	p.P215Q	0.27	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SHANK2	22941	genome.wustl.edu	36	11	70009842	70009842	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	70009842	70009842	C	A	SNP	SHANK2	NM_012309	human	genbank	54_36p	-1	reviewed	missense	c.2419	p.D807Y	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
NLRP14	338323	genome.wustl.edu	36	11	7020928	7020928	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7020928	7020928	G	A	SNP	NLRP14	NM_176822	human	genbank	54_36p	1	reviewed	missense	c.1095	p.M365I	0.98	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047"	-	no_errors
DHCR7	1717	genome.wustl.edu	36	11	70830965	70830965	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	70830965	70830965	G	A	SNP	DHCR7	NM_001360	human	genbank	54_36p	-1	validated	missense	c.404	p.T135I	1	NULL	"HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2"	-	no_errors
NUMA1	4926	genome.wustl.edu	36	11	71404009	71404023	+	In_Frame_Del	DEL	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71404009	71404023	CCAGGGCATCTGCAG	-	DEL	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	in_frame_del	c.2188_2174	p.AADAL725in_frame_del	0.016:0.017:0.018:0.006:0.002:0.000:0.000:0.000:0.002:0.005:0.001:0.007:0.006:0.000:0.079	NULL	superfamily_Prefoldin	"(deletion:cds_exon[71401589,71404954])"	no_errors
FOLR1	2348	genome.wustl.edu	36	11	71584666	71584666	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71584666	71584666	G	A	SNP	FOLR1	NM_000802	human	genbank	54_36p	1	reviewed	missense	c.571	p.E191K	0.38	HMMPfam_Folate_rec	HMMPfam_Folate_rec	-	no_errors
INPPL1	3636	genome.wustl.edu	36	11	71618898	71618898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71618898	71618898	G	A	SNP	INPPL1	NM_001567	human	genbank	54_36p	1	reviewed	missense	c.1025	p.R342Q	1	NULL	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
PDE2A	5138	genome.wustl.edu	36	11	71977887	71977887	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71977887	71977887	G	T	SNP	PDE2A	NM_002599	human	genbank	54_36p	-1	validated	missense	c.919	p.Q307K	1	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065"	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
FCHSD2	9873	genome.wustl.edu	36	11	72231902	72231902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	72231902	72231902	C	T	SNP	FCHSD2	NM_014824	human	genbank	54_36p	-1	validated	silent	c.1479	p.T493	0.81	NULL	"HMMPfam_FCH,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
P2RY2	5029	genome.wustl.edu	36	11	72623231	72623231	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	72623231	72623231	A	T	SNP	P2RY2	NM_002564	human	genbank	54_36p	1	reviewed	missense	c.379	p.I127F	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
P2RY6	5031	genome.wustl.edu	36	11	72686049	72686049	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	72686049	72686049	G	T	SNP	P2RY6	NM_004154	human	genbank	54_36p	1	reviewed	missense	c.838	p.A280S	0.88	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
PLEKHB1	58473	genome.wustl.edu	36	11	73039304	73039304	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	73039304	73039304	G	T	SNP	PLEKHB1	NM_021200	human	genbank	54_36p	1	validated	silent	c.153	p.L51	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
C2CD3	26005	genome.wustl.edu	36	11	73521642	73521642	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	73521642	73521642	C	G	SNP	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	missense	c.1112	p.R371P	0	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
PGM2L1	283209	genome.wustl.edu	36	11	73734324	73734324	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	73734324	73734324	G	A	SNP	PGM2L1	NM_173582	human	genbank	54_36p	-1	validated	silent	c.1056	p.F352	1	superfamily_Phosphoglucomutase first 3 domains	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase C-terminal domain"	-	no_errors
SYT9	143425	genome.wustl.edu	36	11	7395807	7395807	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7395807	7395807	G	T	SNP	SYT9	NM_175733	human	genbank	54_36p	1	provisional	silent	c.1209	p.L403	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYT9	143425	genome.wustl.edu	36	11	7398412	7398412	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7398412	7398412	G	A	SNP	SYT9	NM_175733	human	genbank	54_36p	1	provisional	silent	c.1437	p.K479	1	"HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
POLD3	10714	genome.wustl.edu	36	11	74024916	74024916	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	74024916	74024916	A	C	SNP	POLD3	NM_006591	human	genbank	54_36p	1	validated	missense	c.1146	p.K382N	1	HMMPfam_CDC27	HMMPfam_CDC27	-	no_errors
RNF169	254225	genome.wustl.edu	36	11	74224512	74224512	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	74224512	74224512	A	G	SNP	RNF169	NM_001098638	human	genbank	54_36p	1	validated	missense	c.1216	p.I406V	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
OLFML1	283298	genome.wustl.edu	36	11	7466209	7466209	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7466209	7466209	T	A	SNP	OLFML1	NM_198474	human	genbank	54_36p	1	provisional	silent	c.405	p.T135	0.29	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
OLFML1	283298	genome.wustl.edu	36	11	7487543	7487543	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7487543	7487543	C	G	SNP	OLFML1	NM_198474	human	genbank	54_36p	1	provisional	missense	c.757	p.P253A	0.85	"HMMPfam_OLF,HMMSmart_SM00284"	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
MOGAT2	80168	genome.wustl.edu	36	11	75106597	75106597	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75106597	75106597	C	A	SNP	MOGAT2	NM_025098	human	genbank	54_36p	1	provisional	missense	c.16	p.P6T	0.92	NULL	HMMPfam_DAGAT	-	no_errors
MOGAT2	80168	genome.wustl.edu	36	11	75116767	75116767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75116767	75116767	G	A	SNP	MOGAT2	NM_025098	human	genbank	54_36p	1	provisional	missense	c.580	p.A194T	1	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
PRKRIR	5612	genome.wustl.edu	36	11	75739612	75739612	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75739612	75739612	A	G	SNP	PRKRIR	NM_004705	human	genbank	54_36p	-1	provisional	missense	c.2230	p.Y744H	1	NULL	"HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC"	-	no_errors
PRKRIR	5612	genome.wustl.edu	36	11	75740173	75740173	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75740173	75740173	G	A	SNP	PRKRIR	NM_004705	human	genbank	54_36p	-1	provisional	missense	c.1669	p.R557C	1	NULL	"HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC"	-	no_errors
C11orf30	56946	genome.wustl.edu	36	11	75852728	75852728	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75852728	75852728	T	C	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.787	p.F263L	1	NULL	HMMPfam_ENT	-	no_errors
PPFIBP2	8495	genome.wustl.edu	36	11	7617649	7617649	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7617649	7617649	C	T	SNP	PPFIBP2	NM_003621	human	genbank	54_36p	1	validated	silent	c.1347	p.D449	0.08	NULL	"HMMPfam_Integrase_DNA,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76548208	76548208	+	Silent	SNP	C	G	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	76548208	76548208	C	G	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	silent	c.1071	p.S357	0.3	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76578105	76578105	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	76578105	76578105	G	T	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	missense	c.3572	p.G1191V	1	"HMMPfam_MyTH4,HMMSmart_SM00139"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76591795	76591795	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	76591795	76591795	G	C	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	missense	c.5097	p.K1699N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
INTS4	92105	genome.wustl.edu	36	11	77349752	77349752	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77349752	77349752	G	C	SNP	INTS4	NM_033547	human	genbank	54_36p	-1	validated	silent	c.552	p.V184	0.63	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
ALG8	79053	genome.wustl.edu	36	11	77516105	77516105	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77516105	77516105	G	C	SNP	ALG8	NM_024079	human	genbank	54_36p	-1	reviewed	missense	c.121	p.R41G	1	HMMPfam_Alg6_Alg8	HMMPfam_Alg6_Alg8	-	no_errors
USP35	57558	genome.wustl.edu	36	11	77594679	77594679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77594679	77594679	C	G	SNP	USP35	NM_020798	human	genbank	54_36p	1	validated	silent	c.1341	p.G447	0.92	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
GAB2	9846	genome.wustl.edu	36	11	77612115	77612115	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77612115	77612115	C	T	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.1558	p.D520N	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
NARS2	79731	genome.wustl.edu	36	11	77954928	77954928	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77954928	77954928	C	G	SNP	NARS2	NM_024678	human	genbank	54_36p	-1	provisional	missense	c.411	p.E137D	0.99	"HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases"	"superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
NARS2	79731	genome.wustl.edu	36	11	77957396	77957396	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77957396	77957396	C	G	SNP	NARS2	NM_024678	human	genbank	54_36p	-1	provisional	missense	c.302	p.S101T	1	"HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins"	"HMMPfam_tRNA-synt_2,HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
ODZ4	26011	genome.wustl.edu	36	11	78065017	78065017	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	78065017	78065017	C	T	SNP	ODZ4	NM_001098816	human	genbank	54_36p	-1	validated	missense	c.3338	p.G1113D	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_TolB C-terminal domain,HMMPfam_NHL,HMMPfam_RHS_repeat"	-	no_errors
TUB	7275	genome.wustl.edu	36	11	8079097	8079097	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	8079097	8079097	T	A	SNP	TUB	NM_003320	human	genbank	54_36p	1	reviewed	missense	c.1529	p.F510Y	1	"superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1"	"superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2"	-	no_errors
PCF11	51585	genome.wustl.edu	36	11	82546129	82546129	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	82546129	82546129	A	C	SNP	PCF11	ENST00000298281	human	ensembl	54_36p	1	known	silent	c.297	p.A99	1	NULL	"superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618"	-	no_start_codon
DLG2	1740	genome.wustl.edu	36	11	82858038	82858038	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	82858038	82858038	C	T	SNP	DLG2	NM_001364	human	genbank	54_36p	-1	reviewed	missense	c.2158	p.E720K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin"	###############################################################################################################################################################################################################################################################	-	no_errors
DLG2	1740	genome.wustl.edu	36	11	82860373	82860373	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	82860373	82860373	C	T	SNP	DLG2	NM_001364	human	genbank	54_36p	-1	reviewed	missense	c.2075	p.R692Q	1	"superfamily_SH3-domain,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
DLG2	1740	genome.wustl.edu	36	11	83175364	83175364	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	83175364	83175364	T	C	SNP	DLG2	ENST00000398301	human	ensembl	54_36p	-1	known	silent	c.1644	p.K548	0	superfamily_PDZ	"HMMPfam_MAGUK_N_PEST,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_PDZ_assoc,PatternScan_SERPIN"	-	no_errors
STK33	65975	genome.wustl.edu	36	11	8370708	8370708	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	8370708	8370708	C	T	SNP	STK33	NM_030906	human	genbank	54_36p	-1	validated	silent	c.1470	p.V490	0	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
STK33	65975	genome.wustl.edu	36	11	8442866	8442866	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	8442866	8442866	G	A	SNP	STK33	NM_030906	human	genbank	54_36p	-1	validated	missense	c.419	p.T140M	0.75	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
TMEM126A	84233	genome.wustl.edu	36	11	85042847	85042847	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85042847	85042847	T	C	SNP	TMEM126A	NM_032273	human	genbank	54_36p	1	provisional	missense	c.179	p.V60A	1	HMMPfam_DUF1370	HMMPfam_DUF1370	-	no_errors
TMEM126A	84233	genome.wustl.edu	36	11	85044369	85044369	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85044369	85044369	G	A	SNP	TMEM126A	NM_032273	human	genbank	54_36p	1	provisional	missense	c.364	p.A122T	1	HMMPfam_DUF1370	HMMPfam_DUF1370	-	no_errors
CREBZF	58487	genome.wustl.edu	36	11	85052903	85052903	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85052903	85052903	C	A	SNP	CREBZF	NM_001039618	human	genbank	54_36p	-1	validated	missense	c.665	p.R222L	1	HMMSmart_BRLZ	"PatternScan_BZIP_BASIC,HMMSmart_BRLZ"	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85113990	85113990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85113990	85113990	C	T	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	silent	c.1158	p.S386	1	NULL	"PatternScan_PHOSPHOPANTETHEINE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
PICALM	8301	genome.wustl.edu	36	11	85363443	85363443	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85363443	85363443	C	T	SNP	PICALM	NM_007166	human	genbank	54_36p	-1	validated	missense	c.1900	p.V634I	1	NULL	"superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain"	-	no_errors
TYR	7299	genome.wustl.edu	36	11	88564148	88564148	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	88564148	88564148	A	C	SNP	TYR	NM_000372	human	genbank	54_36p	1	reviewed	missense	c.950	p.D317A	1	"superfamily_Di-copper centre-containing domain,HMMPfam_Tyrosinase"	"superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2"	-	no_errors
NOX4	50507	genome.wustl.edu	36	11	88863277	88863277	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	88863277	88863277	C	A	SNP	NOX4	NM_016931	human	genbank	54_36p	-1	reviewed	missense	c.150	p.L50F	1	NULL	"HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6"	-	no_errors
FOLH1B	219595	genome.wustl.edu	36	11	89053438	89053438	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	89053438	89053438	G	A	SNP	PSMAL	NM_153696	human	genbank	54_36p	1	predicted	silent	c.462	p.L154	1	superfamily_SSF53187	"superfamily_SSF53187,HMMPfam_Peptidase_M28,superfamily_Transferrin_rcpt-like_dimerise,HMMPfam_TFR_dimer"	-	no_errors
FOLH1B	219595	genome.wustl.edu	36	11	89069480	89069480	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	89069480	89069480	C	A	SNP	PSMAL	NM_153696	human	genbank	54_36p	1	predicted	missense	c.1078	p.L360I	1	"HMMPfam_TFR_dimer,superfamily_Transferrin_rcpt-like_dimerise"	"HMMPfam_TFR_dimer,superfamily_Transferrin_rcpt-like_dimerise,HMMPfam_Peptidase_M28,superfamily_SSF53187"	-	no_errors
HEPHL1	341208	genome.wustl.edu	36	11	93394202	93394202	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93394202	93394202	C	T	SNP	HEPHL1	NM_001098672	human	genbank	54_36p	1	validated	missense	c.20	p.A7V	0.51	NULL	"superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2"	-	no_errors
HEPHL1	341208	genome.wustl.edu	36	11	93478930	93478930	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93478930	93478930	A	T	SNP	HEPHL1	NM_001098672	human	genbank	54_36p	1	validated	missense	c.3031	p.S1011C	1	"superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2"	"PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2,superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3"	-	no_errors
GPR83	10888	genome.wustl.edu	36	11	93753026	93753026	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93753026	93753026	G	T	SNP	GPR83	NM_016540	human	genbank	54_36p	-1	validated	silent	c.1209	p.T403	0.93	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CEP57	9702	genome.wustl.edu	36	11	95203847	95203847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	95203847	95203847	C	A	SNP	CEP57	NM_014679	human	genbank	54_36p	1	validated	missense	c.1282	p.Q428K	0.99	NULL	HMMPfam_DUF1167	-	no_errors
MAML2	84441	genome.wustl.edu	36	11	95351789	95351789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	95351789	95351789	G	A	SNP	MAML2	NM_032427	human	genbank	54_36p	-1	validated	missense	c.3442	p.L1148F	1	NULL	HMMPfam_MamL-1	-	no_errors
MAML2	84441	genome.wustl.edu	36	11	95465303	95465303	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	95465303	95465303	T	C	SNP	MAML2	NM_032427	human	genbank	54_36p	-1	validated	missense	c.1540	p.M514V	0.42	NULL	HMMPfam_MamL-1	-	no_errors
SWAP70	23075	genome.wustl.edu	36	11	9702956	9702956	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	9702956	9702956	C	A	SNP	SWAP70	NM_015055	human	genbank	54_36p	1	validated	missense	c.590	p.S197Y	1	NULL	"superfamily_SSF47473,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
SWAP70	23075	genome.wustl.edu	36	11	9726064	9726064	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	9726064	9726064	C	T	SNP	SWAP70	NM_015055	human	genbank	54_36p	1	validated	missense	c.1439	p.A480V	0.98	NULL	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,superfamily_SSF50729"	-	no_errors
CNTN5	53942	genome.wustl.edu	36	11	99567102	99567102	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	99567102	99567102	C	G	SNP	CNTN5	NM_014361	human	genbank	54_36p	1	reviewed	missense	c.1615	p.L539V	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
RBMXP4	100132580	genome.wustl.edu	36	4	110488171	110488171	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	110488171	110488171	G	A	SNP	LOC100132580	XR_037807	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
FDXACB1	91893	genome.wustl.edu	36	11	111251600	111251600	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111251600	111251600	A	T	SNP	FDXACB1	NM_138378	human	genbank	54_36p	-1	validated	missense	c.1131	p.F377L	1	NULL	"HMMPfam_DUF2431,superfamily_Anticodon-binding domain of PheRS,HMMPfam_FDX-ACB"	-	no_errors
LOC100132843	100132843	genome.wustl.edu	36	10	111430605	111430605	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111430605	111430605	G	A	SNP	LOC100132843	XR_037957	human	genbank	54_36p	1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LOC100129929	100129929	genome.wustl.edu	36	3	11900053	11900053	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	11900053	11900053	G	T	SNP	LOC100129929	XM_001716291	human	genbank	54_36p	1	model	nonsense	c.715	p.E239*	1	NULL	NULL	-	no_errors
ANO4	121601	genome.wustl.edu	36	12	100014552	100014552	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	100014552	100014552	G	A	SNP	ANO4	NM_178826	human	genbank	54_36p	1	validated	missense	c.1741	p.G581R	1	NULL	HMMPfam_DUF590	-	no_errors
GNPTAB	79158	genome.wustl.edu	36	12	100677965	100677965	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	100677965	100677965	G	A	SNP	GNPTAB	NM_024312	human	genbank	54_36p	-1	validated	nonsense	c.3223	p.Q1075*	1	NULL	"HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1"	-	no_errors
CLEC9A	283420	genome.wustl.edu	36	12	10098181	10098181	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10098181	10098181	G	C	SNP	CLEC9A	NM_207345	human	genbank	54_36p	1	provisional	missense	c.136	p.G46R	0.05	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
PAH	5053	genome.wustl.edu	36	12	101812699	101812706	+	Frame_Shift_Del	DEL	CTCAAGAT	CTCAAGAT	-	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	CTCAAGAT	CTCAAGAT	CTCAAGAT	-	CTCAAGAT	CTCAAGAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	101812699	101812706	CTCAAGAT	-	DEL	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.296_289	p.I97fs	0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_SSF55021,HMMPfam_ACT"	"superfamily_SSF55021,HMMPfam_ACT,superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL"	"(deletion:cds_exon[101812643,101812826])"	no_errors
C12orf42	374470	genome.wustl.edu	36	12	102220257	102220257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	102220257	102220257	G	A	SNP	C12orf42	NM_001099336	human	genbank	54_36p	-1	validated	missense	c.842	p.A281V	0.94	NULL	NULL	-	no_errors
C12orf42	374470	genome.wustl.edu	36	12	102220460	102220460	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102220460	102220460	G	A	SNP	C12orf42	NM_001099336	human	genbank	54_36p	-1	validated	silent	c.639	p.A213	0	NULL	NULL	-	no_errors
C12orf59	120939	genome.wustl.edu	36	12	10223492	10223492	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10223492	10223492	C	T	SNP	C12orf59	NM_153022	human	genbank	54_36p	1	validated	silent	c.36	p.S12	0.95	NULL	NULL	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102508878	102508878	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102508878	102508878	T	A	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.155	p.V52D	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102578251	102578251	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102578251	102578251	C	T	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.1747	p.L583F	1	"HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102655613	102655613	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102655613	102655613	C	T	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	silent	c.5622	p.A1874	1	"HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
NT5DC3	51559	genome.wustl.edu	36	12	102732871	102732871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102732871	102732871	G	A	SNP	NT5DC3	NM_001031701	human	genbank	54_36p	-1	validated	missense	c.367	p.R123W	1	superfamily_HAD-like	"superfamily_HAD-like,HMMPfam_5_nucleotid"	-	no_errors
TDG	6996	genome.wustl.edu	36	12	102900832	102900832	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102900832	102900832	G	T	SNP	TDG	NM_003211	human	genbank	54_36p	1	reviewed	missense	c.604	p.D202Y	1	"superfamily_UDNA_glycsylseSF,HMMPfam_UDG"	"superfamily_UDNA_glycsylseSF,HMMPfam_UDG"	-	no_errors
TDG	6996	genome.wustl.edu	36	12	102903529	102903529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102903529	102903529	C	T	SNP	TDG	NM_003211	human	genbank	54_36p	1	reviewed	missense	c.983	p.A328V	1	NULL	"HMMPfam_UDG,superfamily_UDNA_glycsylseSF"	-	no_errors
HCFC2	29915	genome.wustl.edu	36	12	103011382	103011382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	103011382	103011382	C	T	SNP	HCFC2	NM_013320	human	genbank	54_36p	1	reviewed	missense	c.1373	p.T458M	0	"HMMSmart_SM00060,superfamily_Fibronectin type III"	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
SLC41A2	84102	genome.wustl.edu	36	12	103845916	103845916	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	103845916	103845916	T	C	SNP	SLC41A2	NM_032148	human	genbank	54_36p	-1	validated	missense	c.271	p.T91A	1	NULL	HMMPfam_MgtE	-	no_errors
KLRC3	3823	genome.wustl.edu	36	12	10462249	10462249	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10462249	10462249	G	A	SNP	KLRC3	NM_007333	human	genbank	54_36p	-1	reviewed	silent	c.447	p.N149	0.01	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	-	no_errors
KLRC3	3823	genome.wustl.edu	36	12	10464245	10464245	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10464245	10464245	T	C	SNP	KLRC3	NM_007333	human	genbank	54_36p	-1	reviewed	missense	c.172	p.I58V	0	NULL	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like"	-	no_errors
NUAK1	9891	genome.wustl.edu	36	12	104985028	104985028	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	104985028	104985028	G	C	SNP	NUAK1	NM_014840	human	genbank	54_36p	-1	validated	silent	c.1668	p.V556	0.05	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TCP11L2	255394	genome.wustl.edu	36	12	105239497	105239497	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	105239497	105239497	T	C	SNP	TCP11L2	NM_152772	human	genbank	54_36p	1	provisional	missense	c.518	p.V173A	0.97	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
POLR3B	55703	genome.wustl.edu	36	12	105281792	105281792	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	105281792	105281792	G	T	SNP	POLR3B	NM_018082	human	genbank	54_36p	1	provisional	silent	c.87	p.L29	1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	###############################################################################################################################################################################################################################################################	-	no_errors
RIC8B	55188	genome.wustl.edu	36	12	105732884	105732884	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	105732884	105732884	T	G	SNP	RIC8B	NM_018157	human	genbank	54_36p	1	validated	missense	c.413	p.L138R	1	"superfamily_ARM-type_fold,HMMPfam_Ric8"	"superfamily_ARM-type_fold,HMMPfam_Ric8"	-	no_errors
TMEM119	338773	genome.wustl.edu	36	12	107509713	107509713	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107509713	107509713	G	A	SNP	TMEM119	NM_181724	human	genbank	54_36p	-1	validated	silent	c.576	p.G192	0.01	NULL	NULL	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107717052	107717052	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107717052	107717052	G	A	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.1202	p.A401V	0.98	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	"superfamily_DEK C-terminal domain,HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107723085	107723085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107723085	107723085	C	T	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.830	p.R277H	1	"HMMPfam_DEK_C,superfamily_DEK C-terminal domain"	"HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_DEK C-terminal domain,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107770579	107770579	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107770579	107770579	T	C	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.74	p.E25G	1	NULL	"HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_DEK C-terminal domain,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
DAO	1610	genome.wustl.edu	36	12	107805409	107805409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107805409	107805409	C	T	SNP	DAO	NM_001917	human	genbank	54_36p	1	reviewed	silent	c.249	p.N83	0.65	"superfamily_Nucleotide-binding domain,HMMPfam_DAO"	"superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,PatternScan_AA_TRNA_LIGASE_I,PatternScan_DAO"	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108138838	108138838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108138838	108138838	C	G	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.3383	p.T1128R	0.39	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108144727	108144727	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108144727	108144727	G	A	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	silent	c.3597	p.S1199	0.29	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108145067	108145067	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108145067	108145067	G	T	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.3759	p.M1253I	1	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
MYO1H	283446	genome.wustl.edu	36	12	108361889	108361889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108361889	108361889	C	T	SNP	MYO1H	NM_001101421	human	genbank	54_36p	1	inferred	missense	c.2347	p.R783W	0.98	NULL	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1"	-	no_errors
TAS2R8	50836	genome.wustl.edu	36	12	10850410	10850410	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10850410	10850410	A	T	SNP	TAS2R8	NM_023918	human	genbank	54_36p	-1	reviewed	missense	c.437	p.L146H	0.01	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
TAS2R9	50835	genome.wustl.edu	36	12	10853316	10853316	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	10853316	10853316	G	T	SNP	TAS2R9	NM_023917	human	genbank	54_36p	-1	reviewed	missense	c.626	p.T209N	0.18	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
IFT81	28981	genome.wustl.edu	36	12	109065708	109065708	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109065708	109065708	C	G	SNP	IFT81	NM_014055	human	genbank	54_36p	1	validated	missense	c.920	p.S307C	1	NULL	NULL	-	no_errors
ATP2A2	488	genome.wustl.edu	36	12	109204980	109204980	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109204980	109204980	T	C	SNP	ATP2A2	NM_170665	human	genbank	54_36p	1	reviewed	silent	c.216	p.S72	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N"	###############################################################################################################################################################################################################################################################	-	no_errors
ARPC3	10094	genome.wustl.edu	36	12	109362576	109362576	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109362576	109362576	G	T	SNP	ARPC3	NM_005719	human	genbank	54_36p	-1	reviewed	missense	c.107	p.T36K	1	"HMMPfam_P21-Arc,superfamily_Arp2/3 complex 21 kDa subunit ARPC3"	"HMMPfam_P21-Arc,superfamily_Arp2/3 complex 21 kDa subunit ARPC3"	-	no_errors
CCDC63	160762	genome.wustl.edu	36	12	109780780	109780780	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109780780	109780780	A	C	SNP	CCDC63	NM_152591	human	genbank	54_36p	1	provisional	missense	c.187	p.I63L	0.27	NULL	NULL	-	no_errors
CUX2	23316	genome.wustl.edu	36	12	110230518	110230518	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110230518	110230518	C	G	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.1156	p.Q386E	1	NULL	"HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
CUX2	23316	genome.wustl.edu	36	12	110269778	110269778	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110269778	110269778	G	C	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.3727	p.G1243R	0.93	superfamily_Homeodomain-like	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
TAS2R50	259296	genome.wustl.edu	36	12	11030719	11030719	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	11030719	11030719	G	C	SNP	TAS2R50	NM_176890	human	genbank	54_36p	-1	validated	missense	c.8	p.T3S	0	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
SH2B3	10019	genome.wustl.edu	36	12	110369574	110369574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110369574	110369574	C	G	SNP	SH2B3	NM_005475	human	genbank	54_36p	1	validated	missense	c.1079	p.S360C	1	superfamily_SH2 domain	"HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
ACAD10	80724	genome.wustl.edu	36	12	110671532	110671532	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110671532	110671532	C	T	SNP	ACAD10	NM_025247	human	genbank	54_36p	1	reviewed	silent	c.2817	p.R939	0.51	"HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ALDH2	217	genome.wustl.edu	36	12	110712635	110712635	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110712635	110712635	C	G	SNP	ALDH2	NM_000690	human	genbank	54_36p	1	reviewed	silent	c.567	p.L189	0.99	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
TMEM116	89894	genome.wustl.edu	36	12	110856111	110856111	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110856111	110856111	C	G	SNP	TMEM116	NM_138341	human	genbank	54_36p	-1	provisional	missense	c.419	p.R140P	0.06	NULL	NULL	-	no_errors
NAA25	80018	genome.wustl.edu	36	12	111000884	111000884	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111000884	111000884	C	T	SNP	C12orf30	NM_024953	human	genbank	54_36p	-1	validated	silent	c.522	p.L174	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_NatB_MDM20"	-	no_errors
C12orf51	283450	genome.wustl.edu	36	12	111094866	111094866	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111094866	111094866	C	T	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	missense	c.10511	p.C3504Y	1	NULL	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
TAS2R43	259289	genome.wustl.edu	36	12	11135240	11135240	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	11135240	11135240	G	C	SNP	TAS2R43	NM_176884	human	genbank	54_36p	-1	provisional	missense	c.856	p.L286V	0.01	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
RPH3A	22895	genome.wustl.edu	36	12	111805509	111805509	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111805509	111805509	G	A	SNP	RPH3A	NM_014954	human	genbank	54_36p	1	validated	missense	c.1343	p.R448Q	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
OAS1	4938	genome.wustl.edu	36	12	111833292	111833292	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111833292	111833292	G	A	SNP	OAS1	NM_001032409	human	genbank	54_36p	1	reviewed	missense	c.523	p.E175K	0	"superfamily_Nucleotidyltransferase,HMMPfam_OAS1_C"	"superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2"	-	no_errors
DTX1	1840	genome.wustl.edu	36	12	112019056	112019056	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	112019056	112019056	G	A	SNP	DTX1	NM_004416	human	genbank	54_36p	1	reviewed	missense	c.1792	p.A598T	1	NULL	"PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
TBX5	6910	genome.wustl.edu	36	12	113278030	113278030	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	113278030	113278030	T	A	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	missense	c.1247	p.Q416L	1	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
FBXW8	26259	genome.wustl.edu	36	12	115850266	115850266	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	115850266	115850266	T	C	SNP	FBXW8	NM_153348	human	genbank	54_36p	1	reviewed	missense	c.374	p.I125T	1	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
NOS1	4842	genome.wustl.edu	36	12	116178198	116178198	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	116178198	116178198	G	T	SNP	NOS1	ENST00000338101	human	ensembl	54_36p	-1	known	silent	c.2559	p.P853	1	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1"	###############################################################################################################################################################################################################################################################	-	no_errors
SRRM4	84530	genome.wustl.edu	36	12	118076550	118076550	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118076550	118076550	T	G	SNP	KIAA1853	NM_194286	human	genbank	54_36p	1	validated	missense	c.1511	p.L504R	1	NULL	NULL	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118401332	118401332	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118401332	118401332	G	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	1	validated	missense	c.392	p.R131H	0.18	NULL	NULL	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118422311	118422311	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118422311	118422311	C	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	1	validated	missense	c.603	p.D201E	1	NULL	NULL	-	no_errors
CIT	11113	genome.wustl.edu	36	12	118693045	118693045	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118693045	118693045	C	T	SNP	CIT	ENST00000392521	human	ensembl	54_36p	-1	known	missense	c.2135	p.R712H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CIT	11113	genome.wustl.edu	36	12	118695044	118695044	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118695044	118695044	T	C	SNP	CIT	NM_007174	human	genbank	54_36p	-1	validated	silent	c.1995	p.A665	0.91	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CCDC64	92558	genome.wustl.edu	36	12	119003073	119003073	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	119003073	119003073	G	C	SNP	CCDC64	NM_207311	human	genbank	54_36p	1	validated	splice_site	c.1309-1	e7-1	1	-	-	-	no_errors
GCN1L1	10985	genome.wustl.edu	36	12	119080063	119080063	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	119080063	119080063	G	A	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	silent	c.3060	p.P1020	0	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
RNF10	9921	genome.wustl.edu	36	12	119479604	119479604	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	119479604	119479604	G	A	SNP	RNF10	NM_014868	human	genbank	54_36p	1	reviewed	missense	c.782	p.S261N	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
ANAPC5	51433	genome.wustl.edu	36	12	120242632	120242633	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	GC	GC	GC	AT	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	120242632	120242633	GC	AT	DNP	ANAPC5	NM_016237	human	genbank	54_36p	-1	reviewed	missense	c.1454_1453	p.A485I	1.000:0.998	"superfamily_TPR-like,HMMSmart_SM00028"	"superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
KDM2B	84678	genome.wustl.edu	36	12	120362202	120362202	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	120362202	120362202	C	A	SNP	FBXL10	NM_032590	human	genbank	54_36p	-1	reviewed	missense	c.3670	p.D1224Y	1	"superfamily_RNI-like,HMMSmart_SM00367"	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
RHOF	54509	genome.wustl.edu	36	12	120701841	120701841	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	120701841	120701841	G	C	SNP	RHOF	NM_019034	human	genbank	54_36p	-1	validated	missense	c.582	p.S194R	0.94	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
MLXIP	22877	genome.wustl.edu	36	12	121180101	121180101	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121180101	121180101	A	G	SNP	MLXIP	ENST00000319080	human	ensembl	54_36p	1	known	missense	c.709	p.K237E	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
MLXIP	22877	genome.wustl.edu	36	12	121189425	121189425	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121189425	121189425	G	T	SNP	MLXIP	NM_014938	human	genbank	54_36p	1	validated	nonsense	c.2095	p.G699*	1	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CLIP1	6249	genome.wustl.edu	36	12	121387219	121387219	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121387219	121387219	C	A	SNP	CLIP1	NM_002956	human	genbank	54_36p	-1	validated	silent	c.2448	p.G816	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
ZCCHC8	55596	genome.wustl.edu	36	12	121532444	121532444	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121532444	121532444	C	G	SNP	ZCCHC8	NM_017612	human	genbank	54_36p	-1	validated	splice_site	c.875+1	e9+1	1	-	-	-	no_errors
KNTC1	9735	genome.wustl.edu	36	12	121618772	121618772	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121618772	121618772	G	T	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	missense	c.1616	p.W539L	1	NULL	"HMMPfam_Rod_C,PatternScan_BZIP_BASIC"	-	no_errors
ERC1	23085	genome.wustl.edu	36	12	1216323	1216323	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1216323	1216323	C	T	SNP	ERC1	NM_178040	human	genbank	54_36p	1	reviewed	nonsense	c.2479	p.Q827*	1	HMMPfam_Cast	"HMMPfam_Cast,superfamily_Prefoldin,HMMPfam_RBD-FIP"	-	no_errors
LRP6	4040	genome.wustl.edu	36	12	12165331	12165331	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	12165331	12165331	G	T	SNP	LRP6	NM_002336	human	genbank	54_36p	-1	validated	missense	c.4838	p.S1613Y	1	NULL	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
GPR81	27198	genome.wustl.edu	36	12	121780477	121780477	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121780477	121780477	G	A	SNP	GPR81	NM_032554	human	genbank	54_36p	-1	validated	silent	c.363	p.H121	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CCDC62	84660	genome.wustl.edu	36	12	121856670	121856670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121856670	121856670	G	A	SNP	CCDC62	NM_201435	human	genbank	54_36p	1	validated	missense	c.1726	p.D576N	0	NULL	NULL	-	no_errors
PITPNM2	57605	genome.wustl.edu	36	12	122037918	122037918	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122037918	122037918	C	T	SNP	PITPNM2	NM_020845	human	genbank	54_36p	-1	validated	silent	c.3276	p.T1092	0.01	NULL	"HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122838342	122838342	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122838342	122838342	C	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	missense	c.731	p.A244D	1	HMMPfam_DHC_N1	HMMPfam_DHC_N1	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122855451	122855451	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122855451	122855451	C	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	missense	c.1998	p.H666Q	0.98	NULL	HMMPfam_DHC_N1	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122863771	122863771	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122863771	122863771	T	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	silent	c.2352	p.P784	0.99	NULL	HMMPfam_DHC_N1	-	no_errors
UBC	7316	genome.wustl.edu	36	12	123964117	123964117	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	123964117	123964117	C	T	SNP	UBC	NM_021009	human	genbank	54_36p	-1	validated	missense	c.154	p.D52N	1	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	-	no_errors
BRI3BP	140707	genome.wustl.edu	36	12	124063063	124063063	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124063063	124063063	C	A	SNP	BRI3BP	NM_080626	human	genbank	54_36p	1	validated	missense	c.244	p.L82M	0.75	NULL	NULL	-	no_errors
AACS	65985	genome.wustl.edu	36	12	124175451	124175451	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124175451	124175451	C	T	SNP	AACS	NM_023928	human	genbank	54_36p	1	validated	missense	c.1237	p.P413S	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124634364	124634364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124634364	124634364	G	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	missense	c.1293	p.L431F	1	NULL	NULL	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124701392	124701392	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124701392	124701392	C	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	silent	c.1839	p.I613	0.39	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128124816	128124816	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128124816	128124816	C	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	nonsense	c.2857	p.E953*	0.92	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128132509	128132509	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128132509	128132509	C	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.1671	p.E557	0.99	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128750475	128750475	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128750475	128750475	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.801	p.I267	0.99	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128750620	128750620	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128750620	128750620	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.656	p.P219L	0	NULL	NULL	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130016964	130016964	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130016964	130016964	T	A	SNP	GPR133	NM_198827	human	genbank	54_36p	1	validated	missense	c.107	p.F36Y	1	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130053283	130053283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130053283	130053283	C	T	SNP	GPR133	ENST00000376682	human	ensembl	54_36p	1	known	missense	c.32	p.P11L	0	NULL	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130054769	130054769	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130054769	130054769	C	A	SNP	GPR133	NM_198827	human	genbank	54_36p	1	validated	silent	c.1230	p.I410	0.01	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
SFSWAP	6433	genome.wustl.edu	36	12	130849938	130849938	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130849938	130849938	C	T	SNP	SFRS8	NM_004592	human	genbank	54_36p	1	reviewed	silent	c.2808	p.V936	0.97	NULL	"HMMPfam_DRY_EERY,superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp"	-	no_errors
POLE	5426	genome.wustl.edu	36	12	131711577	131711577	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	131711577	131711577	G	T	SNP	POLE	NM_006231	human	genbank	54_36p	-1	validated	missense	c.6734	p.T2245N	1	NULL	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744"	-	no_errors
GOLGA3	2802	genome.wustl.edu	36	12	131883237	131883237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	131883237	131883237	C	G	SNP	GOLGA3	NM_005895	human	genbank	54_36p	-1	reviewed	missense	c.2061	p.M687I	1	NULL	"superfamily_Spectrin repeat,superfamily_Prefoldin"	-	no_errors
GRIN2B	2904	genome.wustl.edu	36	12	13659413	13659413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	13659413	13659413	C	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.R519Q	1	"superfamily_SSF53850,HMMSmart_PBPe"	"superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C"	-	no_errors
ERC1	23085	genome.wustl.edu	36	12	1424012	1424012	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1424012	1424012	T	G	SNP	ERC1	NM_178040	human	genbank	54_36p	1	reviewed	silent	c.3048	p.L1016	1	NULL	"superfamily_Prefoldin,HMMPfam_RBD-FIP,HMMPfam_Cast"	-	no_errors
HIST4H4	121504	genome.wustl.edu	36	12	14815167	14815167	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	14815167	14815167	C	T	SNP	HIST4H4	NM_175054	human	genbank	54_36p	-1	reviewed	missense	c.119	p.R40Q	1	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
WBP11	51729	genome.wustl.edu	36	12	14838057	14838057	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	14838057	14838057	T	C	SNP	WBP11	NM_016312	human	genbank	54_36p	-1	reviewed	missense	c.788	p.D263G	1	NULL	HMMPfam_Wbp11	-	no_errors
MGP	4256	genome.wustl.edu	36	12	14926380	14926380	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	14926380	14926380	G	A	SNP	MGP	NM_000900	human	genbank	54_36p	-1	validated	missense	c.272	p.A91V	1	"HMMSmart_GLA,HMMPfam_Gla,superfamily_VitK_dep_GLA,PatternScan_GLA_1"	"HMMSmart_GLA,HMMPfam_Gla,superfamily_VitK_dep_GLA,PatternScan_GLA_1"	-	no_errors
PTPRO	5800	genome.wustl.edu	36	12	15545856	15545856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	15545856	15545856	G	A	SNP	PTPRO	NM_030667	human	genbank	54_36p	1	reviewed	missense	c.697	p.V233I	0.98	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRO	5800	genome.wustl.edu	36	12	15552818	15552818	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	15552818	15552818	C	T	SNP	PTPRO	NM_030667	human	genbank	54_36p	1	reviewed	silent	c.1314	p.H438	0.97	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
FBXL14	144699	genome.wustl.edu	36	12	1572492	1572492	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1572492	1572492	C	T	SNP	FBXL14	NM_152441	human	genbank	54_36p	-1	validated	silent	c.1002	p.T334	1	superfamily_SSF52047	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047"	-	no_errors
EPS8	2059	genome.wustl.edu	36	12	15727127	15727127	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	15727127	15727127	G	T	SNP	EPS8	NM_004447	human	genbank	54_36p	-1	reviewed	missense	c.26	p.P9H	1	NULL	"HMMSmart_PTB,superfamily_SSF50729,HMMPfam_PTB,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
SUPT16HP	400011	genome.wustl.edu	36	12	16444344	16444344	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	16444344	16444344	G	A	SNP	LOC400011	XR_016968	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SLC6A12	6539	genome.wustl.edu	36	12	184122	184122	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	184122	184122	G	T	SNP	SLC6A12	NM_003044	human	genbank	54_36p	-1	validated	missense	c.218	p.A73D	1	PatternScan_NA_NEUROTRAN_SYMP_1	"PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
CACNA2D4	93589	genome.wustl.edu	36	12	1866479	1866479	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1866479	1866479	C	A	SNP	CACNA2D4	NM_172364	human	genbank	54_36p	-1	reviewed	missense	c.799	p.D267Y	1	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1"	-	no_errors
PLCZ1	89869	genome.wustl.edu	36	12	18727493	18727493	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	18727493	18727493	C	A	SNP	PLCZ1	NM_033123	human	genbank	54_36p	-1	provisional	missense	c.1774	p.G592C	0.1	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
LOC643668	643668	genome.wustl.edu	36	12	18737273	18737273	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	18737273	18737273	G	C	SNP	LOC643668	XR_016986	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC643668	643668	genome.wustl.edu	36	12	18738165	18738165	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	18738165	18738165	G	A	SNP	LOC643668	XR_016986	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PLEKHA5	54477	genome.wustl.edu	36	12	19410169	19410169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	19410169	19410169	C	G	SNP	PLEKHA5	NM_019012	human	genbank	54_36p	1	validated	missense	c.3115	p.Q1039E	0.11	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PLEKHA5	54477	genome.wustl.edu	36	12	19414000	19414000	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	19414000	19414000	G	C	SNP	PLEKHA5	NM_019012	human	genbank	54_36p	1	validated	splice_site	c.3351+1	e25+1	1	-	-	-	no_errors
PDE3A	5139	genome.wustl.edu	36	12	20694658	20694658	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20694658	20694658	G	T	SNP	PDE3A	NM_000921	human	genbank	54_36p	1	validated	missense	c.2782	p.V928F	0.07	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I"	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20777247	20777247	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20777247	20777247	C	G	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1324	p.L442V	0.78	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20781364	20781364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20781364	20781364	G	A	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1439	p.C480Y	1	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20781415	20781416	+	Missense_Mutation	DNP	CA	CA	AG	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	CA	CA	CA	AG	CA	CA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20781415	20781416	CA	AG	DNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1490_1491	p.T497K	0.999:0.845	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2094813	2094813	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2094813	2094813	C	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.212	p.A71E	0.96	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
SLCO1B1	10599	genome.wustl.edu	36	12	21185846	21185846	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21185846	21185846	G	T	SNP	SLCO1B1	NM_006446	human	genbank	54_36p	1	reviewed	missense	c.71	p.C24F	0.63	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SLCO1B1	10599	genome.wustl.edu	36	12	21221096	21221096	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21221096	21221096	A	T	SNP	SLCO1B1	NM_006446	human	genbank	54_36p	1	reviewed	missense	c.479	p.K160I	0.63	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	-	no_errors
SLCO1B1	10599	genome.wustl.edu	36	12	21250089	21250089	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21250089	21250089	A	T	SNP	SLCO1B1	NM_006446	human	genbank	54_36p	1	reviewed	missense	c.1352	p.H451L	0.01	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	"HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	-	no_errors
SLCO1A2	6579	genome.wustl.edu	36	12	21344736	21344736	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21344736	21344736	C	T	SNP	SLCO1A2	NM_021094	human	genbank	54_36p	-1	reviewed	nonsense	c.723	p.W241*	1	"superfamily_MFS general substrate transporter,HMMPfam_OATP"	"superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SLCO1A2	6579	genome.wustl.edu	36	12	21363579	21363579	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21363579	21363579	C	T	SNP	SLCO1A2	ENST00000390670	human	ensembl	54_36p	-1	known	silent	c.48	p.S16	0	superfamily_MFS_gen_substrate_transporter	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
PYROXD1	79912	genome.wustl.edu	36	12	21507026	21507026	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21507026	21507026	G	C	SNP	PYROXD1	NM_024854	human	genbank	54_36p	1	validated	missense	c.1079	p.C360S	1	"HMMPfam_Pyr_redox_2,superfamily_SSF51905"	"HMMPfam_Pyr_redox_2,superfamily_SSF51905"	-	no_errors
LDHB	3945	genome.wustl.edu	36	12	21688176	21688176	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21688176	21688176	C	G	SNP	LDHB	NM_002300	human	genbank	54_36p	-1	validated	missense	c.381	p.K127N	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Ldh_1_N"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Ldh_1_N,superfamily_LDH C-terminal domain-like,HMMPfam_Ldh_1_C,PatternScan_L_LDH"	-	no_errors
KCNJ8	3764	genome.wustl.edu	36	12	21810804	21810804	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	21810804	21810804	A	G	SNP	KCNJ8	NM_004982	human	genbank	54_36p	-1	reviewed	missense	c.395	p.L132P	1	"HMMPfam_IRK,superfamily_SSF81324"	"HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set"	-	no_errors
ABCC9	10060	genome.wustl.edu	36	12	21845258	21845258	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21845258	21845258	C	T	SNP	ABCC9	NM_020297	human	genbank	54_36p	-1	reviewed	missense	c.4637	p.R1546H	1	superfamily_SSF52540	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
CMAS	55907	genome.wustl.edu	36	12	22105655	22105655	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	22105655	22105655	T	G	SNP	CMAS	NM_018686	human	genbank	54_36p	1	reviewed	splice_site	c.960+2	e6+2	1	-	-	-	no_errors
KIAA0528	9847	genome.wustl.edu	36	12	22513988	22513988	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	22513988	22513988	C	G	SNP	KIAA0528	NM_014802	human	genbank	54_36p	-1	predicted	missense	c.2455	p.D819H	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
SOX5	6660	genome.wustl.edu	36	12	23578429	23578429	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	23578429	23578429	T	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.2283	p.Q761H	1	NULL	"PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
SOX5	6660	genome.wustl.edu	36	12	23785168	23785168	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	23785168	23785168	T	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.641	p.E214V	1	NULL	"HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2483928	2483928	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2483928	2483928	C	A	SNP	CACNA1C	ENST00000399634	human	ensembl	54_36p	1	known	silent	c.1179	p.S393	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	25289551	25289551	C	A	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12V	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
IFLTD1	160492	genome.wustl.edu	36	12	25570406	25570406	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	25570406	25570406	G	A	SNP	IFLTD1	NM_152590	human	genbank	54_36p	-1	validated	missense	c.629	p.A210V	0.4	"superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	"superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26455589	26455589	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	26455589	26455589	T	A	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.7330	p.T2444S	0.6	HMMPfam_Ion_trans	"HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26463359	26463359	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26463359	26463359	T	G	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.7000	p.T2334P	1	HMMPfam_Ion_trans	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2658874	2658874	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2658874	2658874	G	T	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5095	p.A1699S	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2659073	2659073	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2659073	2659073	C	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5294	p.A1765D	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26646683	26646683	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26646683	26646683	G	T	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.3565	p.L1189I	1	HMMPfam_RYDR_ITPR	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26876940	26876940	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26876940	26876940	G	C	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.42	p.I14M	1	HMMPfam_Ins145_P3_rec	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
C12orf11	55726	genome.wustl.edu	36	12	26980898	26980898	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26980898	26980898	T	C	SNP	C12orf11	NM_018164	human	genbank	54_36p	-1	validated	missense	c.106	p.N36D	1	HMMPfam_DUF2151	HMMPfam_DUF2151	-	no_errors
STK38L	23012	genome.wustl.edu	36	12	27353314	27353314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	27353314	27353314	G	C	SNP	STK38L	NM_015000	human	genbank	54_36p	1	validated	missense	c.310	p.V104L	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
ARNTL2	56938	genome.wustl.edu	36	12	27444781	27444781	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	27444781	27444781	T	C	SNP	ARNTL2	NM_020183	human	genbank	54_36p	1	provisional	missense	c.967	p.W323R	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3"	-	no_errors
REP15	387849	genome.wustl.edu	36	12	27740817	27740817	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	27740817	27740817	G	A	SNP	REP15	NM_001029874	human	genbank	54_36p	1	provisional	missense	c.55	p.V19I	0	NULL	NULL	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29483541	29483541	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	29483541	29483541	C	A	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.3251	p.W1084L	0	NULL	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29488472	29488472	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	29488472	29488472	C	T	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.2890	p.D964N	0.01	NULL	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29539634	29539634	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	29539634	29539634	A	G	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.305	p.V102A	0.58	"HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases"	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TSPAN9	10867	genome.wustl.edu	36	12	3257869	3257869	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3257869	3257869	G	T	SNP	TSPAN9	NM_006675	human	genbank	54_36p	1	reviewed	nonsense	c.85	p.G29*	1	HMMPfam_Tetraspannin	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
FGD4	121512	genome.wustl.edu	36	12	32626657	32626657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	32626657	32626657	C	T	SNP	FGD4	NM_139241	human	genbank	54_36p	1	reviewed	missense	c.589	p.H197Y	0	superfamily_DBL homology domain (DH-domain)	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
DNM1L	10059	genome.wustl.edu	36	12	32775673	32775673	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	32775673	32775673	G	T	SNP	DNM1L	NM_012062	human	genbank	54_36p	1	reviewed	missense	c.1317	p.M439I	1	HMMPfam_Dynamin_M	"HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_SM00302"	-	no_errors
SYT10	341359	genome.wustl.edu	36	12	33470699	33470699	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	33470699	33470699	T	C	SNP	SYT10	NM_198992	human	genbank	54_36p	-1	provisional	splice_site	c.152-2	e2-2	1	-	-	-	no_errors
PRMT8	56341	genome.wustl.edu	36	12	3556325	3556325	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3556325	3556325	T	G	SNP	PRMT8	NM_019854	human	genbank	54_36p	1	validated	missense	c.740	p.M247R	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_HSP70_2"	-	no_errors
EFCAB4B	84766	genome.wustl.edu	36	12	3639045	3639045	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3639045	3639045	G	T	SNP	EFCAB4B	NM_032680	human	genbank	54_36p	-1	validated	silent	c.708	p.L236	0.96	NULL	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
PARP11	57097	genome.wustl.edu	36	12	3791822	3791822	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3791822	3791822	T	C	SNP	PARP11	NM_020367	human	genbank	54_36p	-1	validated	missense	c.724	p.K242E	1	"superfamily_ADP-ribosylation,HMMPfam_PARP"	"HMMPfam_WWE,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	37981704	37981704	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	37981704	37981704	C	A	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	silent	c.4737	p.V1579	0.19	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	37989745	37989745	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	37989745	37989745	C	T	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	missense	c.4148	p.C1383Y	0.95	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	"HMMSmart_SM00320,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	38012445	38012445	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38012445	38012445	T	C	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	silent	c.2850	p.K950	0.89	superfamily_WD40 repeat-like	"HMMSmart_SM00320,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
C12orf40	283461	genome.wustl.edu	36	12	38364950	38364950	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38364950	38364950	C	T	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	missense	c.1301	p.S434L	0.25	NULL	NULL	-	no_errors
SLC2A13	114134	genome.wustl.edu	36	12	38510252	38510252	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38510252	38510252	G	T	SNP	SLC2A13	NM_052885	human	genbank	54_36p	-1	validated	nonsense	c.1308	p.Y436*	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	38974960	38974960	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38974960	38974960	T	C	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.2855	p.I952T	0.66	superfamily_SSF52058	"superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2"	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	38985923	38985923	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38985923	38985923	T	A	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.3847	p.S1283T	1	"HMMPfam_LRR_1,superfamily_SSF52058"	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	39031692	39031692	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	39031692	39031692	G	T	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.6466	p.V2156F	1	superfamily_WD40_like	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
CNTN1	1272	genome.wustl.edu	36	12	39705370	39705370	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	39705370	39705370	C	A	SNP	CNTN1	NM_001843	human	genbank	54_36p	1	reviewed	missense	c.2675	p.P892Q	1	"superfamily_Fibronectin type III,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,PatternScan_N6_MTASE,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
PDZRN4	29951	genome.wustl.edu	36	12	40252756	40252756	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	40252756	40252756	G	T	SNP	PDZRN4	NM_013377	human	genbank	54_36p	1	validated	missense	c.1134	p.K378N	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
PRICKLE1	144165	genome.wustl.edu	36	12	41144824	41144824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	41144824	41144824	G	C	SNP	PRICKLE1	NM_153026	human	genbank	54_36p	-1	validated	missense	c.1279	p.L427V	1	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42103950	42103950	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42103950	42103950	C	G	SNP	ADAMTS20	ENST00000389417	human	ensembl	54_36p	-1	known	missense	c.4332	p.L1444F	0	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42107469	42107469	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42107469	42107469	G	C	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.4016	p.A1339G	1	"superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42112378	42112378	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42112378	42112378	C	T	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.3092	p.S1031N	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42132705	42132705	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42132705	42132705	A	G	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	silent	c.1821	p.T607	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42134112	42134112	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42134112	42134112	T	G	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.1625	p.H542P	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
LOC401717	401717	genome.wustl.edu	36	12	42341041	42341041	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42341041	42341041	C	T	SNP	LOC401717	XR_016218	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
FGF23	8074	genome.wustl.edu	36	12	4349937	4349937	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	4349937	4349937	C	T	SNP	FGF23	NM_020638	human	genbank	54_36p	-1	reviewed	missense	c.589	p.A197T	0.26	NULL	"PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF"	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44519445	44519445	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44519445	44519445	A	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.1397	p.K466T	1	NULL	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_Winged helix DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44530398	44530398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44530398	44530398	C	T	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.2225	p.S742F	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44531669	44531669	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44531669	44531669	G	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.3496	p.G1166R	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
SRSF2IP	9169	genome.wustl.edu	36	12	44607946	44607946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44607946	44607946	G	C	SNP	SFRS2IP	NM_004719	human	genbank	54_36p	-1	validated	missense	c.1805	p.T602R	0.03	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_RING_1"	-	no_errors
SLC38A1	81539	genome.wustl.edu	36	12	44881235	44881235	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44881235	44881235	T	C	SNP	SLC38A1	NM_001077484	human	genbank	54_36p	-1	validated	missense	c.916	p.K306E	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
NDUFA9	4704	genome.wustl.edu	36	12	4633733	4633733	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	4633733	4633733	G	T	SNP	NDUFA9	NM_005002	human	genbank	54_36p	1	provisional	missense	c.64	p.A22S	0.07	NULL	"superfamily_NAD(P)-bd,HMMPfam_Epimerase"	-	no_errors
COL2A1	1280	genome.wustl.edu	36	12	46672951	46672951	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	46672951	46672951	G	A	SNP	COL2A1	NM_001844	human	genbank	54_36p	-1	reviewed	missense	c.1000	p.R334W	1	HMMPfam_Collagen	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
OR10AD1	121275	genome.wustl.edu	36	12	46882923	46882923	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	46882923	46882923	C	G	SNP	OR10AD1	NM_001004134	human	genbank	54_36p	-1	provisional	missense	c.420	p.K140N	0.63	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ANP32D	23519	genome.wustl.edu	36	12	47153049	47153051	+	In_Frame_Del	DEL	TAG	TAG	-	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	TAG	TAG	TAG	-	TAG	TAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47153049	47153051	TAG	-	DEL	ANP32D	NM_012404	human	genbank	54_36p	1	reviewed	in_frame_del	c.335_337	p.LENLE112in_frame_del*	1.000:1.000:1.000	superfamily_SSF52075	superfamily_SSF52075	"(deletion:cds_exon[47152715,47153110])"	no_errors
C12orf41	54934	genome.wustl.edu	36	12	47351980	47351980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47351980	47351980	G	A	SNP	C12orf41	NM_017822	human	genbank	54_36p	-1	validated	missense	c.578	p.A193V	1	NULL	NULL	-	no_errors
CCNT1	904	genome.wustl.edu	36	12	47374183	47374183	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47374183	47374183	C	-	DEL	CCNT1	NM_001240	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1081	p.D361fs	0.99	NULL	"PatternScan_CYCLINS,superfamily_Cyclin_like,HMMPfam_Cyclin_N,HMMSmart_CYCLIN"	"(deletion:cds_exon[47373083,47374486])"	no_errors
DDX23	9416	genome.wustl.edu	36	12	47513508	47513508	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47513508	47513508	C	A	SNP	DDX23	NM_004818	human	genbank	54_36p	-1	reviewed	missense	c.1622	p.S541I	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
TROAP	10024	genome.wustl.edu	36	12	48010613	48010613	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48010613	48010613	A	G	SNP	TROAP	NM_005480	human	genbank	54_36p	1	validated	missense	c.1718	p.E573G	0.02	NULL	NULL	-	no_errors
FAIM2	23017	genome.wustl.edu	36	12	48569235	48569235	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48569235	48569235	G	A	SNP	FAIM2	NM_012306	human	genbank	54_36p	-1	validated	silent	c.669	p.C223	1	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
AQP2	100131403	genome.wustl.edu	36	12	48631219	48631219	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48631219	48631219	C	T	SNP	LOC100131403	XM_001718330	human	genbank	54_36p	-1	model	missense	c.511	p.A171T	0.86	NULL	NULL	-	no_errors
SMARCD1	6602	genome.wustl.edu	36	12	48778839	48778839	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48778839	48778839	G	A	SNP	SMARCD1	NM_003076	human	genbank	54_36p	1	reviewed	missense	c.1468	p.A490T	1	NULL	"superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151"	-	no_errors
LIMA1	51474	genome.wustl.edu	36	12	48928777	48928777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48928777	48928777	G	A	SNP	LIMA1	NM_016357	human	genbank	54_36p	-1	validated	missense	c.25	p.R9W	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
LARP4	113251	genome.wustl.edu	36	12	49147018	49147018	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	49147018	49147018	C	T	SNP	LARP4	NM_199188	human	genbank	54_36p	1	validated	missense	c.1411	p.P471S	0.26	NULL	"superfamily_SSF46785,HMMSmart_LA,HMMPfam_La,HMMSmart_RRM"	-	no_errors
ATF1	466	genome.wustl.edu	36	12	49489522	49489522	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	49489522	49489522	T	A	SNP	ATF1	NM_005171	human	genbank	54_36p	1	validated	missense	c.211	p.L71I	1	HMMPfam_pKID	"HMMPfam_pKID,HMMSmart_BRLZ,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC"	-	no_errors
BIN2	51411	genome.wustl.edu	36	12	49982775	49982775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	49982775	49982775	C	T	SNP	BIN2	NM_016293	human	genbank	54_36p	-1	validated	missense	c.274	p.E92K	1	"HMMSmart_SM00721,HMMPfam_BAR"	"HMMSmart_SM00721,HMMPfam_BAR"	-	no_errors
KCNA5	3741	genome.wustl.edu	36	12	5024132	5024132	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5024132	5024132	G	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	silent	c.558	p.R186	0.98	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCNA5	3741	genome.wustl.edu	36	12	5024759	5024759	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5024759	5024759	C	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	silent	c.1185	p.S395	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50386588	50386588	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50386588	50386588	A	G	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.1457	p.K486R	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50401778	50401778	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50401778	50401778	G	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.1817	p.R606Q	1	NULL	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50431564	50431564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50431564	50431564	G	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.2290	p.V764I	1	superfamily_Voltage-gated potassium channels	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
ANKRD33	341405	genome.wustl.edu	36	12	50570999	50570999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	50570999	50570999	G	A	SNP	ANKRD33	NM_182608	human	genbank	54_36p	1	validated	silent	c.1002	p.S334	0	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
KRT86	3892	genome.wustl.edu	36	12	50985326	50985326	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50985326	50985326	C	A	SNP	KRT86	NM_002284	human	genbank	54_36p	1	reviewed	silent	c.771	p.T257	0.99	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6B	3854	genome.wustl.edu	36	12	51131903	51131903	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51131903	51131903	C	G	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	missense	c.227	p.S76T	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6A	3853	genome.wustl.edu	36	12	51173148	51173148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51173148	51173148	G	C	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	missense	c.92	p.S31C	0.15	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT71	112802	genome.wustl.edu	36	12	51228750	51228763	+	Splice_Site	DEL	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	-	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	-	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51228750	51228763	ACGGCTTCAAAGAG	-	DEL	KRT71	NM_033448	human	genbank	54_36p	-1	provisional	splice_site_del	c.813+13_813+1	e5-1	0.983:0.945:0.004:0.005:0.095:0.245:0.879:0.900:0.854:0.843:0.978:0.982:0.978:0.569	-	-	"(deletion:intron[51228368,51228751], cds_exon[51228752,51228847])"	no_errors
KRT74	121391	genome.wustl.edu	36	12	51248285	51248285	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51248285	51248285	G	A	SNP	KRT74	NM_175053	human	genbank	54_36p	-1	validated	silent	c.1290	p.S430	0.84	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT72	140807	genome.wustl.edu	36	12	51267752	51267752	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51267752	51267752	C	T	SNP	KRT72	NM_080747	human	genbank	54_36p	-1	provisional	missense	c.1240	p.V414M	0.97	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT73	319101	genome.wustl.edu	36	12	51293740	51293740	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51293740	51293740	T	G	SNP	KRT73	NM_175068	human	genbank	54_36p	-1	provisional	missense	c.983	p.K328T	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT2	3849	genome.wustl.edu	36	12	51325292	51325292	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51325292	51325292	G	A	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	silent	c.1698	p.G566	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT2	3849	genome.wustl.edu	36	12	51327830	51327830	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51327830	51327830	T	C	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	missense	c.1199	p.N400S	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT1	3848	genome.wustl.edu	36	12	51358657	51358657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51358657	51358657	C	T	SNP	KRT1	NM_006121	human	genbank	54_36p	-1	reviewed	missense	c.742	p.D248N	0.52	HMMPfam_Filament	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
LOC400036	400036	genome.wustl.edu	36	12	51411523	51411523	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51411523	51411523	G	A	SNP	LOC400036	XR_042304	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KRT4	3851	genome.wustl.edu	36	12	51487226	51487226	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51487226	51487226	C	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	missense	c.1679	p.S560I	0.95	NULL	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT79	338785	genome.wustl.edu	36	12	51504354	51504354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51504354	51504354	G	T	SNP	KRT79	NM_175834	human	genbank	54_36p	-1	validated	missense	c.915	p.N305K	1	"HMMPfam_Filament,superfamily_Prefoldin"	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
ATF7	11016	genome.wustl.edu	36	12	52217576	52217576	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	52217576	52217576	G	C	SNP	ATF7	NM_006856	human	genbank	54_36p	-1	validated	missense	c.292	p.L98V	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ATPASE_ALPHA_BETA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC"	-	no_errors
HOXC4	3221	genome.wustl.edu	36	12	52734193	52734193	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	52734193	52734193	G	C	SNP	HOXC4	NM_014620	human	genbank	54_36p	1	reviewed	missense	c.220	p.G74R	1	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HNRNPA1	3178	genome.wustl.edu	36	12	52961503	52961503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	52961503	52961503	G	A	SNP	HNRNPA1	NM_031157	human	genbank	54_36p	1	reviewed	missense	c.82	p.E28K	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ITGA5	3678	genome.wustl.edu	36	12	53081716	53081716	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53081716	53081716	G	C	SNP	ITGA5	NM_002205	human	genbank	54_36p	-1	reviewed	missense	c.2307	p.S769R	1	"HMMPfam_Integrin_alpha2,superfamily_SSF69179"	"superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
NCKAP1L	3071	genome.wustl.edu	36	12	53216270	53216270	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53216270	53216270	C	G	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	1	reviewed	missense	c.3047	p.S1016C	0.34	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
KIAA0748	9840	genome.wustl.edu	36	12	53641242	53641242	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53641242	53641242	G	T	SNP	KIAA0748	NM_001098815	human	genbank	54_36p	-1	validated	missense	c.1544	p.T515N	0	NULL	NULL	-	no_errors
NEUROD4	58158	genome.wustl.edu	36	12	53707449	53707449	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53707449	53707449	G	T	SNP	NEUROD4	NM_021191	human	genbank	54_36p	1	validated	missense	c.959	p.G320V	0.05	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
OR10A7	121364	genome.wustl.edu	36	12	53901770	53901770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53901770	53901770	C	T	SNP	OR10A7	NM_001005280	human	genbank	54_36p	1	provisional	missense	c.695	p.T232I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10A7	121364	genome.wustl.edu	36	12	53901945	53901945	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53901945	53901945	C	T	SNP	OR10A7	NM_001005280	human	genbank	54_36p	1	provisional	silent	c.870	p.Y290	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR6C75	390323	genome.wustl.edu	36	12	54045559	54045559	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54045559	54045559	T	A	SNP	OR6C75	NM_001005497	human	genbank	54_36p	1	provisional	missense	c.398	p.I133N	0.79	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ITGA7	3679	genome.wustl.edu	36	12	54373249	54373249	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54373249	54373249	G	A	SNP	ITGA7	NM_002206	human	genbank	54_36p	-1	reviewed	silent	c.2655	p.G885	0.99	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
RDH5	5959	genome.wustl.edu	36	12	54404013	54404013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54404013	54404013	G	A	SNP	RDH5	NM_002905	human	genbank	54_36p	1	reviewed	missense	c.646	p.E216K	1	superfamily_NAD(P)-bd	"PatternScan_ADH_SHORT,superfamily_NAD(P)-bd,HMMPfam_adh_short"	-	no_errors
DNAJC14	85406	genome.wustl.edu	36	12	54508469	54508469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54508469	54508469	G	A	SNP	DNAJC14	NM_032364	human	genbank	54_36p	-1	validated	missense	c.241	p.P81S	1	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ"	-	no_errors
MMP19	4327	genome.wustl.edu	36	12	54517349	54517351	+	In_Frame_Del	DEL	AAC	AAC	-	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	AAC	AAC	AAC	-	AAC	AAC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54517349	54517351	AAC	-	DEL	MMP19	NM_002429	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1265_1263	p.L421in_frame_del	1.000:1.000:0.983	"superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	"superfamily_PGBD-like,HMMPfam_PG_binding_1,HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Metalloproteases (zincins) catalytic domain,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	"(deletion:cds_exon[54517087,54517425])"	no_errors
DGKA	1606	genome.wustl.edu	36	12	54620413	54620413	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54620413	54620413	G	T	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	missense	c.847	p.D283Y	1	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
DGKA	1606	genome.wustl.edu	36	12	54620698	54620698	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54620698	54620698	G	A	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	silent	c.942	p.A314	0.21	"HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain"	"HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain"	-	no_errors
DGKA	1606	genome.wustl.edu	36	12	54633437	54633437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54633437	54633437	A	T	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	missense	c.2100	p.E700D	1	"HMMPfam_DAGK_acc,HMMSmart_SM00045"	"HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain"	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54703778	54703778	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54703778	54703778	C	A	SNP	IKZF4	NM_022465	human	genbank	54_36p	1	validated	missense	c.144	p.D48E	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54714800	54714800	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54714800	54714800	C	G	SNP	IKZF4	NM_022465	human	genbank	54_36p	1	validated	missense	c.1176	p.I392M	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54773433	54773433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54773433	54773433	G	A	SNP	ERBB3	NM_001982	human	genbank	54_36p	1	reviewed	missense	c.1312	p.V438I	0.82	"superfamily_L domain-like,HMMPfam_Recep_L_domain"	"superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54781659	54781659	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54781659	54781659	T	A	SNP	ERBB3	NM_001982	human	genbank	54_36p	1	reviewed	missense	c.3582	p.D1194E	1	NULL	"HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),superfamily_L domain-like"	-	no_errors
ESYT1	23344	genome.wustl.edu	36	12	54814394	54814394	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54814394	54814394	C	G	SNP	FAM62A	NM_015292	human	genbank	54_36p	1	provisional	missense	c.1547	p.A516G	0.84	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
STAT2	6773	genome.wustl.edu	36	12	55031427	55031427	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55031427	55031427	A	G	SNP	STAT2	NM_005419	human	genbank	54_36p	-1	reviewed	missense	c.857	p.V286A	0.04	"superfamily_STAT,HMMPfam_STAT_alpha"	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
TIMELESS	8914	genome.wustl.edu	36	12	55113600	55113600	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55113600	55113600	C	G	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	missense	c.355	p.A119P	1	HMMPfam_TIMELESS	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
GLS2	27165	genome.wustl.edu	36	12	55151826	55151826	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55151826	55151826	G	T	SNP	GLS2	NM_013267	human	genbank	54_36p	-1	reviewed	missense	c.1650	p.D550E	1	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
BAZ2A	11176	genome.wustl.edu	36	12	55295117	55295117	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55295117	55295117	T	C	SNP	BAZ2A	NM_013449	human	genbank	54_36p	-1	validated	silent	c.684	p.A228	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ATP5B	506	genome.wustl.edu	36	12	55325235	55325235	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55325235	55325235	C	G	SNP	ATP5B	NM_001686	human	genbank	54_36p	-1	reviewed	silent	c.297	p.V99	1	"superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_N"	###############################################################################################################################################################################################################################################################	-	no_errors
NACA	4666	genome.wustl.edu	36	12	55393239	55393239	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55393239	55393239	G	C	SNP	NACA	NM_005594	human	genbank	54_36p	-1	validated	missense	c.384	p.I128M	0.86	HMMPfam_NAC	"HMMPfam_NAC,HMMPfam_UBA"	-	no_errors
NAB2	4665	genome.wustl.edu	36	12	55771786	55771786	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55771786	55771786	G	A	SNP	NAB2	NM_005967	human	genbank	54_36p	1	reviewed	missense	c.695	p.G232D	1	HMMPfam_NCD2	"HMMPfam_NCD1,HMMPfam_NCD2"	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55857547	55857547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55857547	55857547	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.4267	p.R1423C	0.62	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b"	###############################################################################################################################################################################################################################################################	-	no_errors
R3HDM2	22864	genome.wustl.edu	36	12	55938093	55938093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55938093	55938093	A	T	SNP	R3HDM2	NM_014925	human	genbank	54_36p	-1	validated	missense	c.1337	p.L446H	1	NULL	NULL	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56150686	56150686	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56150686	56150686	T	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.1896	p.N632K	0.78	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56150700	56150700	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56150700	56150700	G	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.1910	p.R637Q	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
MARS	4141	genome.wustl.edu	36	12	56194772	56194772	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56194772	56194772	C	T	SNP	MARS	NM_004990	human	genbank	54_36p	1	reviewed	missense	c.1970	p.A657V	1	"HMMPfam_tRNA-synt_1g,superfamily_tRNAsyn_1a_bind"	"superfamily_GST_C_like,HMMPfam_GST_C,superfamily_SSF52374,HMMPfam_tRNA-synt_1g,PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF57770,superfamily_tRNAsyn_1a_bind,superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1"	-	no_errors
OS9	10956	genome.wustl.edu	36	12	56398264	56398265	+	Nonsense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56398264	56398265	GA	TT	DNP	OS9	NM_006812	human	genbank	54_36p	1	reviewed	nonsense	c.1203_1204	p.EKE401D*	0.035:0.194	NULL	"HMMPfam_PRKCSH,superfamily_Mannose 6-phosphate receptor domain"	-	no_errors
OS9	10956	genome.wustl.edu	36	12	56400183	56400183	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	56400183	56400183	C	A	SNP	OS9	NM_006812	human	genbank	54_36p	1	reviewed	silent	c.1635	p.V545	1	NULL	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_PRKCSH"	-	no_errors
LRIG3	121227	genome.wustl.edu	36	12	57560777	57560777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	57560777	57560777	G	C	SNP	LRIG3	NM_153377	human	genbank	54_36p	-1	provisional	missense	c.1654	p.L552V	1	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
ANO2	57101	genome.wustl.edu	36	12	5786740	5786740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5786740	5786740	G	A	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	silent	c.939	p.D313	0.98	NULL	HMMPfam_DUF590	-	no_errors
ANO2	57101	genome.wustl.edu	36	12	5833485	5833485	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5833485	5833485	T	G	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	missense	c.606	p.K202N	1	NULL	HMMPfam_DUF590	-	no_errors
VWF	7450	genome.wustl.edu	36	12	6037406	6037406	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6037406	6037406	G	A	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	silent	c.1599	p.D533	1	"HMMSmart_SM00216,HMMPfam_VWD"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM19A2	338811	genome.wustl.edu	36	12	60435001	60435001	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	60435001	60435001	C	G	SNP	FAM19A2	NM_178539	human	genbank	54_36p	-1	reviewed	missense	c.178	p.E60Q	1	NULL	NULL	-	no_errors
PPM1H	57460	genome.wustl.edu	36	12	61374034	61374034	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	61374034	61374034	G	A	SNP	PPM1H	NM_020700	human	genbank	54_36p	-1	validated	silent	c.1086	p.T362	1	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332"	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C"	-	no_errors
SRGAP1	57522	genome.wustl.edu	36	12	62789063	62789063	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	62789063	62789063	A	G	SNP	SRGAP1	NM_020762	human	genbank	54_36p	1	validated	missense	c.1898	p.Y633C	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
TBK1	29110	genome.wustl.edu	36	12	63175583	63175583	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	63175583	63175583	A	T	SNP	TBK1	NM_013254	human	genbank	54_36p	1	reviewed	missense	c.1575	p.R525S	0.94	NULL	"HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
WIF1	11197	genome.wustl.edu	36	12	63731445	63731445	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	63731445	63731445	T	C	SNP	WIF1	NM_007191	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.K364R	1	NULL	"HMMSmart_WIF,HMMPfam_WIF,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF"	-	no_errors
LOC729484	729484	genome.wustl.edu	36	12	64717396	64717396	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	64717396	64717396	A	T	SNP	LOC729484	XR_016010	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
TMBIM4	51643	genome.wustl.edu	36	12	64832396	64832396	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	64832396	64832396	G	A	SNP	TMBIM4	NM_016056	human	genbank	54_36p	-1	validated	silent	c.234	p.L78	0.93	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
GRIP1	23426	genome.wustl.edu	36	12	65143104	65143104	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	65143104	65143104	G	T	SNP	GRIP1	NM_021150	human	genbank	54_36p	-1	validated	silent	c.909	p.S303	1	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
NOP2	4839	genome.wustl.edu	36	12	6545552	6545552	+	Silent	SNP	A	C	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6545552	6545552	A	C	SNP	NOP2	NM_001033714	human	genbank	54_36p	-1	validated	silent	c.438	p.S146	0	NULL	"superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN,HMMPfam_P120R"	-	no_errors
CHD4	1108	genome.wustl.edu	36	12	6571444	6571444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6571444	6571444	G	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.2989	p.L997F	1	HMMPfam_SNF2_N	###############################################################################################################################################################################################################################################################	-	no_errors
DYRK2	8445	genome.wustl.edu	36	12	66338143	66338143	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	66338143	66338143	G	T	SNP	DYRK2	NM_006482	human	genbank	54_36p	1	reviewed	missense	c.1189	p.A397S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MDM1	56890	genome.wustl.edu	36	12	67006998	67006998	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	67006998	67006998	A	C	SNP	MDM1	NM_017440	human	genbank	54_36p	-1	reviewed	silent	c.204	p.S68	1	NULL	NULL	-	no_errors
LOC387867	387867	genome.wustl.edu	36	12	67233142	67233142	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	67233142	67233142	G	T	SNP	LOC387867	XM_001726521	human	genbank	54_36p	-1	model	missense	c.788	p.P263H	1	NULL	"superfamily_Ribosomal protein S2,PatternScan_RIBOSOMAL_S2_1,HMMPfam_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2"	-	pseudogene
RAB3IP	117177	genome.wustl.edu	36	12	68419907	68419907	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	68419907	68419907	A	C	SNP	RAB3IP	NM_175623	human	genbank	54_36p	1	validated	missense	c.14	p.K5T	0	NULL	HMMPfam_Sec2p	-	no_errors
LRRC23	10233	genome.wustl.edu	36	12	6893455	6893455	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6893455	6893455	C	T	SNP	LRRC23	NM_006992	human	genbank	54_36p	1	validated	missense	c.898	p.P300S	0	NULL	"superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
ATN1	1822	genome.wustl.edu	36	12	6918599	6918599	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6918599	6918599	C	T	SNP	ATN1	NM_001007026	human	genbank	54_36p	1	reviewed	missense	c.3212	p.A1071V	1	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
LPCAT3	10162	genome.wustl.edu	36	12	6957772	6957772	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6957772	6957772	C	G	SNP	LPCAT3	NM_005768	human	genbank	54_36p	-1	validated	missense	c.1032	p.W344C	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
LGR5	8549	genome.wustl.edu	36	12	70264197	70264197	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	70264197	70264197	C	A	SNP	LGR5	NM_003667	human	genbank	54_36p	1	provisional	missense	c.2140	p.P714T	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
ZFC3H1	196441	genome.wustl.edu	36	12	70322513	70322513	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	70322513	70322513	T	C	SNP	ZFC3H1	NM_144982	human	genbank	54_36p	-1	validated	missense	c.1597	p.M533V	1	NULL	"HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase,HMMSmart_SM00386"	-	no_errors
THAP2	83591	genome.wustl.edu	36	12	70344567	70344567	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	70344567	70344567	A	G	SNP	THAP2	NM_031435	human	genbank	54_36p	1	provisional	missense	c.11	p.N4S	1	HMMPfam_THAP	"HMMPfam_THAP,HMMSmart_SM00692"	-	no_errors
ACSM4	341392	genome.wustl.edu	36	12	7348231	7348231	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7348231	7348231	A	T	SNP	ACSM4	NM_001080454	human	genbank	54_36p	1	inferred	missense	c.37	p.I13F	0.02	NULL	"superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ACSM4	341392	genome.wustl.edu	36	12	7354409	7354409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7354409	7354409	C	T	SNP	ACSM4	NM_001080454	human	genbank	54_36p	1	inferred	silent	c.420	p.I140	0.86	"HMMPfam_AMP-binding,superfamily_SSF56801"	"HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801"	-	no_errors
CAPS2	84698	genome.wustl.edu	36	12	73962383	73962383	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	73962383	73962383	T	G	SNP	CAPS2	NM_032606	human	genbank	54_36p	-1	validated	missense	c.888	p.K296N	1	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh"	-	no_errors
GLIPR1	11010	genome.wustl.edu	36	12	74170514	74170514	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	74170514	74170514	G	T	SNP	GLIPR1	NM_006851	human	genbank	54_36p	1	reviewed	missense	c.482	p.G161V	0.02	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP"	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP,PatternScan_CRISP_1,PatternScan_CRISP_2"	-	no_errors
KRR1	11103	genome.wustl.edu	36	12	74184022	74184022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	74184022	74184022	G	A	SNP	KRR1	NM_007043	human	genbank	54_36p	-1	validated	missense	c.760	p.R254C	1	NULL	"HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1"	-	no_errors
NAP1L1	4673	genome.wustl.edu	36	12	74733342	74733342	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	74733342	74733342	T	G	SNP	NAP1L1	NM_004537	human	genbank	54_36p	-1	reviewed	missense	c.826	p.K276Q	1	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
CD163L1	283316	genome.wustl.edu	36	12	7477386	7477386	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7477386	7477386	C	T	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	missense	c.296	p.R99H	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CD163	9332	genome.wustl.edu	36	12	7542786	7542786	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7542786	7542786	T	A	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.723	p.Q241H	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CSRP2	1466	genome.wustl.edu	36	12	75776877	75776877	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	75776877	75776877	C	A	SNP	CSRP2	NM_001321	human	genbank	54_36p	-1	reviewed	missense	c.568	p.V190F	1	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
NAV3	89795	genome.wustl.edu	36	12	77040268	77040268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	77040268	77040268	G	A	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	silent	c.4167	p.L1389	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
NAV3	89795	genome.wustl.edu	36	12	77106243	77106243	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	77106243	77106243	C	T	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	missense	c.5809	p.R1937C	1	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PPP1R12A	4659	genome.wustl.edu	36	12	78740067	78740067	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	78740067	78740067	A	G	SNP	PPP1R12A	NM_002480	human	genbank	54_36p	-1	reviewed	missense	c.827	p.I276T	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
MYF5	4617	genome.wustl.edu	36	12	79636345	79636345	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	79636345	79636345	T	G	SNP	MYF5	NM_005593	human	genbank	54_36p	1	validated	splice_site	c.577+2	e2+2	1	-	-	-	no_errors
SLC2A3	6515	genome.wustl.edu	36	12	7977757	7977757	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7977757	7977757	T	C	SNP	SLC2A3	NM_006931	human	genbank	54_36p	-1	validated	silent	c.24	p.P8	0	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
PPFIA2	8499	genome.wustl.edu	36	12	80271202	80271202	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	80271202	80271202	T	A	SNP	PPFIA2	NM_003625	human	genbank	54_36p	-1	reviewed	silent	c.1821	p.G607	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
FOXJ2	55810	genome.wustl.edu	36	12	8091762	8091762	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	8091762	8091762	G	A	SNP	FOXJ2	NM_018416	human	genbank	54_36p	1	validated	missense	c.835	p.G279R	1	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
TMTC2	160335	genome.wustl.edu	36	12	81605516	81605516	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	81605516	81605516	G	T	SNP	TMTC2	NM_152588	human	genbank	54_36p	1	provisional	missense	c.20	p.S7I	1	NULL	"HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
LRRIQ1	84125	genome.wustl.edu	36	12	83991003	83991003	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	83991003	83991003	G	C	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	missense	c.2883	p.W961C	0.01	superfamily_RNI-like	"superfamily_RNI-like,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LRRIQ1	84125	genome.wustl.edu	36	12	84042150	84042150	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	84042150	84042150	T	C	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	silent	c.3729	p.T1243	0	NULL	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RASSF9	9182	genome.wustl.edu	36	12	84723176	84723176	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	84723176	84723176	T	A	SNP	RASSF9	NM_005447	human	genbank	54_36p	-1	reviewed	missense	c.743	p.D248V	0	NULL	HMMSmart_SM00314	-	no_errors
MGAT4C	25834	genome.wustl.edu	36	12	84897722	84897722	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	84897722	84897722	T	C	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	missense	c.913	p.K305E	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
CLEC4D	338339	genome.wustl.edu	36	12	8564164	8564165	+	Missense_Mutation	DNP	TG	TG	GT	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TG	TG	TG	GT	TG	TG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	8564164	8564165	TG	GT	DNP	CLEC4D	NM_080387	human	genbank	54_36p	1	reviewed	missense	c.460_461	p.W154V	0.853:0.839	"HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C"	"PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C"	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	859035	859035	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	859035	859035	C	A	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	silent	c.2409	p.G803	1	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	859235	859235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	859235	859235	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.2609	p.T870I	0.99	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	864283	864283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	864283	864283	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.4052	p.A1351V	0.07	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	86978787	86978787	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	86978787	86978787	A	G	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.6473	p.L2158S	0.61	NULL	NULL	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	86989297	86989297	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	86989297	86989297	A	G	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	silent	c.5916	p.D1972	1	NULL	NULL	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	87001786	87001786	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	87001786	87001786	C	A	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.4781	p.S1594I	1	NULL	NULL	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	87029169	87029169	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	87029169	87029169	C	A	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.2308	p.A770S	0.99	NULL	NULL	-	no_errors
ATP2B1	490	genome.wustl.edu	36	12	88519315	88519315	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	88519315	88519315	T	C	SNP	ATP2B1	NM_001682	human	genbank	54_36p	-1	reviewed	silent	c.3087	p.K1029	1	"superfamily_SSF81665,HMMPfam_Cation_ATPase_C"	"HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C"	-	no_errors
DCN	1634	genome.wustl.edu	36	12	90082549	90082549	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	90082549	90082549	G	T	SNP	DCN	NM_001920	human	genbank	54_36p	-1	reviewed	silent	c.288	p.I96	1	"superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369"	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364"	-	no_errors
MRPL42	28977	genome.wustl.edu	36	12	92405446	92405446	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	92405446	92405446	C	G	SNP	MRPL42	NM_014050	human	genbank	54_36p	1	reviewed	missense	c.262	p.H88D	1	HMMPfam_MRP-S32	HMMPfam_MRP-S32	-	no_errors
MRPL42	28977	genome.wustl.edu	36	12	92405485	92405485	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	92405485	92405485	G	T	SNP	MRPL42	NM_014050	human	genbank	54_36p	1	reviewed	nonsense	c.301	p.E101*	0	HMMPfam_MRP-S32	HMMPfam_MRP-S32	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9246425	9246425	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	9246425	9246425	G	A	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	silent	c.390	p.V130	1	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9246536	9246536	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	9246536	9246536	G	C	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	missense	c.279	p.I93M	0	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9247632	9247632	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	9247632	9247632	G	A	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	missense	c.266	p.T89I	1	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
CRADD	8738	genome.wustl.edu	36	12	92596747	92596747	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	92596747	92596747	G	T	SNP	CRADD	NM_003805	human	genbank	54_36p	1	reviewed	silent	c.66	p.V22	1	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD"	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00005,HMMPfam_Death,PatternScan_IG_MHC"	-	no_errors
PLXNC1	10154	genome.wustl.edu	36	12	93099437	93099437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	93099437	93099437	G	A	SNP	PLXNC1	NM_005761	human	genbank	54_36p	1	provisional	missense	c.1288	p.V430I	0.52	superfamily_Sema	"superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_TIG,HMMSmart_IPT,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
LOC400061	400061	genome.wustl.edu	36	12	93439105	93439105	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	93439105	93439105	G	A	SNP	LOC400061	XR_016608	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
NR2C1	7181	genome.wustl.edu	36	12	93969683	93969683	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	93969683	93969683	G	A	SNP	NR2C1	NM_003297	human	genbank	54_36p	-1	reviewed	silent	c.951	p.N317	0.33	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,PatternScan_SUBTILASE_ASP,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
FGD6	55785	genome.wustl.edu	36	12	94002491	94002491	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94002491	94002491	C	G	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.4170	p.E1390D	0.99	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
VEZT	55591	genome.wustl.edu	36	12	94218234	94218234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94218234	94218234	G	C	SNP	VEZT	NM_017599	human	genbank	54_36p	1	validated	missense	c.1994	p.C665S	1	NULL	NULL	-	no_errors
HAL	3034	genome.wustl.edu	36	12	94894370	94894370	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94894370	94894370	C	G	SNP	HAL	NM_002108	human	genbank	54_36p	-1	reviewed	missense	c.1801	p.E601Q	1	superfamily_L-Aspartase-like	"superfamily_L-Aspartase-like,HMMPfam_PAL,PatternScan_PAL_HISTIDASE"	-	no_errors
HAL	3034	genome.wustl.edu	36	12	94894533	94894533	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94894533	94894533	G	A	SNP	HAL	NM_002108	human	genbank	54_36p	-1	reviewed	silent	c.1737	p.V579	1	"HMMPfam_PAL,superfamily_L-Aspartase-like"	"HMMPfam_PAL,PatternScan_PAL_HISTIDASE,superfamily_L-Aspartase-like"	-	no_errors
ELK3	2004	genome.wustl.edu	36	12	95164924	95164924	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	95164924	95164924	C	G	SNP	ELK3	NM_005230	human	genbank	54_36p	1	reviewed	missense	c.283	p.P95A	1	superfamily_Winged helix DNA-binding domain	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
SCYL2	55681	genome.wustl.edu	36	12	99232491	99232491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99232491	99232491	G	A	SNP	SCYL2	NM_017988	human	genbank	54_36p	1	provisional	missense	c.1063	p.G355R	1	"superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat"	-	no_errors
SLC17A8	246213	genome.wustl.edu	36	12	99308981	99308981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99308981	99308981	G	A	SNP	SLC17A8	NM_139319	human	genbank	54_36p	1	validated	missense	c.426	p.M142I	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC17A8	246213	genome.wustl.edu	36	12	99338033	99338033	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99338033	99338033	C	A	SNP	SLC17A8	NM_139319	human	genbank	54_36p	1	validated	missense	c.1735	p.Q579K	1	NULL	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
NR1H4	9971	genome.wustl.edu	36	12	99454900	99454900	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99454900	99454900	C	T	SNP	NR1H4	NM_005123	human	genbank	54_36p	1	provisional	missense	c.863	p.T288M	1	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
LOC728467	728467	genome.wustl.edu	36	12	99986406	99986406	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99986406	99986406	T	A	SNP	LOC728467	XR_015542	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000218758	0	genome.wustl.edu	36	19	12219175	12219175	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12219175	12219175	G	C	SNP	ENSG00000218758	ENST00000393337	human	ensembl	54_36p	-1	known	missense	c.1261	p.P421A	0.7	superfamily_SSF57667	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_start_codon
ENSG00000196703	0	genome.wustl.edu	36	11	123591505	123591505	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123591505	123591505	T	G	SNP	ENSG00000196703	ENST00000334412	human	ensembl	54_36p	1	known	nonsense	c.873	p.Y291*	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_start_codon:no_stop_codon
ENSG00000214298	0	genome.wustl.edu	36	10	126845421	126845421	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	126845421	126845421	G	T	SNP	ENSG00000214298	ENST00000398057	human	ensembl	54_36p	1	known	silent	c.186	p.L62	1	NULL	NULL	-	no_stop_codon
LOC100128729	100128729	genome.wustl.edu	36	7	128005280	128005280	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128005280	128005280	G	A	SNP	LOC100128729	XR_042327	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100131134	100131134	genome.wustl.edu	36	7	128280650	128280650	+	Silent	SNP	T	A	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128280650	128280650	T	A	SNP	LOC100131134	XM_001726492	human	genbank	54_36p	-1	model	silent	c.9	p.V3	0	NULL	NULL	-	no_errors
LOC100130883	100130883	genome.wustl.edu	36	3	129156	129156	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	129156	129156	G	C	SNP	LOC100130883	XM_001714425	human	genbank	54_36p	-1	model	silent	c.384	p.L128	0.06	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
ENSG00000205940	0	genome.wustl.edu	36	4	12948665	12948665	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	12948665	12948665	G	T	SNP	ENSG00000205940	ENST00000382444	human	ensembl	54_36p	1	known	missense	c.918	p.E306D	1	"HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold"	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold"	-	no_stop_codon:bad_bp_length_for_coding_region
TMTC4	84899	genome.wustl.edu	36	13	100085302	100085302	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100085302	100085302	G	C	SNP	TMTC4	NM_032813	human	genbank	54_36p	-1	validated	missense	c.1351	p.L451V	0.14	NULL	"HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100512349	100512349	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100512349	100512349	A	G	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4727	p.L1576P	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100512443	100512443	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100512443	100512443	G	A	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4633	p.R1545W	1	NULL	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100515868	100515868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100515868	100515868	C	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4493	p.R1498H	1	NULL	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100533220	100533220	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100533220	100533220	G	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.3706	p.P1236T	1	superfamily_Voltage-gated potassium channels	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100742594	100742594	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	13	100742594	100742594	G	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.924	p.F308L	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100828997	100828997	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100828997	100828997	A	C	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.300	p.S100R	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
ITGBL1	9358	genome.wustl.edu	36	13	101018076	101018076	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	101018076	101018076	G	A	SNP	ITGBL1	NM_004791	human	genbank	54_36p	1	provisional	silent	c.342	p.K114	1	"superfamily_SSF57196,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA"	"HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF"	-	no_errors
TPP2	7174	genome.wustl.edu	36	13	102078242	102078242	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102078242	102078242	G	C	SNP	TPP2	NM_003291	human	genbank	54_36p	1	reviewed	missense	c.983	p.S328T	1	"superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8"	"PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER"	-	no_errors
ERCC5	2073	genome.wustl.edu	36	13	102308654	102308654	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102308654	102308654	T	C	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	missense	c.557	p.I186T	0.98	superfamily_PIN domain-like	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
ERCC5	2073	genome.wustl.edu	36	13	102326188	102326188	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102326188	102326188	C	T	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	silent	c.3495	p.A1165	1	NULL	"HMMPfam_XPG_N,HMMSmart_SM00485,HMMPfam_XPG_I,HMMSmart_SM00484,PatternScan_XPG_2,HMMSmart_SM00279,PatternScan_XPG_1,superfamily_5' to 3' exonuclease C-terminal subdomain,superfamily_PIN domain-like"	-	no_errors
SLC10A2	6555	genome.wustl.edu	36	13	102516248	102516248	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102516248	102516248	C	T	SNP	SLC10A2	NM_000452	human	genbank	54_36p	-1	validated	nonsense	c.353	p.W118*	1	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
LOC390424	390424	genome.wustl.edu	36	13	106114293	106114294	+	RNA	INS	-	-	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	106114293	106114294	-	A	INS	LOC390424	XR_016535	human	genbank	54_36p	1	model	rna	NULL	NULL	0.958:0.959	-	-	-	no_errors
ABHD13	84945	genome.wustl.edu	36	13	107679821	107679821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	107679821	107679821	C	T	SNP	ABHD13	NM_032859	human	genbank	54_36p	1	validated	missense	c.254	p.P85L	1	superfamily_alpha/beta-Hydrolases	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116343	108116343	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108116343	108116343	G	A	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.71	p.R24H	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116425	108116425	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108116425	108116425	G	A	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	silent	c.153	p.A51	0.01	superfamily_Ankyrin repeat	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108338817	108338817	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108338817	108338817	A	T	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.1584	p.R528S	0.99	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108575501	108575501	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108575501	108575501	A	G	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	silent	c.3510	p.R1170	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
COL4A1	1282	genome.wustl.edu	36	13	109615261	109615261	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	13	109615261	109615261	G	A	SNP	COL4A1	NM_001845	human	genbank	54_36p	-1	reviewed	missense	c.4099	p.P1367S	0.97	HMMPfam_Collagen	"HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111"	-	no_errors
COL4A1	1282	genome.wustl.edu	36	13	109625612	109625612	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	109625612	109625612	T	A	SNP	COL4A1	NM_001845	human	genbank	54_36p	-1	reviewed	missense	c.3152	p.Q1051L	0.99	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A2	1284	genome.wustl.edu	36	13	109880245	109880245	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	109880245	109880245	C	T	SNP	COL4A2	NM_001846	human	genbank	54_36p	1	reviewed	missense	c.490	p.P164S	1	HMMPfam_Collagen	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold"	-	no_errors
ING1	3621	genome.wustl.edu	36	13	110170145	110170145	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	110170145	110170145	G	T	SNP	ING1	NM_005537	human	genbank	54_36p	1	reviewed	missense	c.1134	p.W378C	1	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
ARHGEF7	8874	genome.wustl.edu	36	13	110736520	110736520	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	110736520	110736520	T	G	SNP	ARHGEF7	NM_145735	human	genbank	54_36p	1	reviewed	missense	c.1976	p.M659R	1	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
ATP4B	496	genome.wustl.edu	36	13	113355240	113355240	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	113355240	113355240	G	C	SNP	ATP4B	NM_000705	human	genbank	54_36p	-1	reviewed	silent	c.504	p.P168	0.52	HMMPfam_Na_K-ATPase	"HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2"	-	no_errors
ZNF828	283489	genome.wustl.edu	36	13	114107684	114107684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	114107684	114107684	G	C	SNP	ZNF828	NM_032436	human	genbank	54_36p	1	provisional	missense	c.265	p.D89H	0.98	superfamily_C2H2 and C2HC zinc fingers	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC283523	283523	genome.wustl.edu	36	13	18153787	18153787	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18153787	18153787	A	T	SNP	LOC283523	XM_001714856	human	genbank	54_36p	1	model	nonsense	c.1243	p.K415*	1	"superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	"superfamily_Telomeric repeat binding factor (TRF) dimerisation domain,HMMPfam_TRF,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	pseudogene
TUBA3C	7278	genome.wustl.edu	36	13	18646050	18646051	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	CC	CC	CC	AA	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18646050	18646051	CC	AA	DNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.1306_1305	p.G436C	0.999:0.979	superfamily_Tubulin C-terminal domain-like	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649364	18649364	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18649364	18649364	C	T	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.759	p.T253	0.96	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18650417	18650417	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18650417	18650417	A	G	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.344	p.V115A	1	"HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TPTE2	93492	genome.wustl.edu	36	13	18954660	18954660	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18954660	18954660	T	G	SNP	TPTE2	NM_199254	human	genbank	54_36p	-1	validated	missense	c.147	p.E49D	0	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2"	-	no_errors
ZMYM2	7750	genome.wustl.edu	36	13	19539011	19539011	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	19539011	19539011	A	G	SNP	ZMYM2	NM_003453	human	genbank	54_36p	1	validated	silent	c.3153	p.V1051	1	NULL	"HMMPfam_zf-FCS,HMMSmart_TRASH"	-	no_errors
SACS	26278	genome.wustl.edu	36	13	22811133	22811133	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	22811133	22811133	G	A	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	nonsense	c.4441	p.Q1481*	1	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748"	-	no_errors
SACS	26278	genome.wustl.edu	36	13	22811870	22811870	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	22811870	22811870	T	C	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.3704	p.H1235R	1	NULL	"superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Nucleotidyltransferase substrate binding subunit/domain"	-	no_errors
PARP4	143	genome.wustl.edu	36	13	23949839	23949839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	23949839	23949839	C	G	SNP	PARP4	NM_006437	human	genbank	54_36p	-1	reviewed	missense	c.1789	p.D597H	1	NULL	"HMMPfam_BRCT,superfamily_BRCT,HMMSmart_BRCT,superfamily_PARP_reg,HMMPfam_PARP,superfamily_SSF56399,HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	-	no_errors
FAM123A	219287	genome.wustl.edu	36	13	24641799	24641799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	24641799	24641799	G	T	SNP	FAM123A	NM_152704	human	genbank	54_36p	-1	validated	silent	c.1959	p.G653	1	NULL	HMMPfam_WTX	-	no_errors
MTMR6	9107	genome.wustl.edu	36	13	24724045	24724045	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	24724045	24724045	G	A	SNP	MTMR6	NM_004685	human	genbank	54_36p	-1	validated	missense	c.1424	p.S475F	0.95	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
MTMR6	9107	genome.wustl.edu	36	13	24729942	24729942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	24729942	24729942	C	T	SNP	MTMR6	NM_004685	human	genbank	54_36p	-1	validated	missense	c.901	p.G301S	1	"HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMSmart_SM00404,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
ATP8A2	51761	genome.wustl.edu	36	13	25309376	25309376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	25309376	25309376	C	T	SNP	ATP8A2	NM_016529	human	genbank	54_36p	1	validated	missense	c.2830	p.P944S	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
GTF3A	2971	genome.wustl.edu	36	13	26907711	26907711	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	26907711	26907711	G	A	SNP	GTF3A	ENST00000381140	human	ensembl	54_36p	1	known	missense	c.1246	p.V416I	0.01	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
LNX2	222484	genome.wustl.edu	36	13	27039953	27039953	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27039953	27039953	G	A	SNP	LNX2	NM_153371	human	genbank	54_36p	-1	validated	missense	c.679	p.P227S	1	superfamily_PDZ	"superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
LNX2	222484	genome.wustl.edu	36	13	27053767	27053767	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27053767	27053767	T	A	SNP	LNX2	NM_153371	human	genbank	54_36p	-1	validated	missense	c.74	p.E25V	1	superfamily_SSF57850	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
GSX1	219409	genome.wustl.edu	36	13	27266002	27266002	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27266002	27266002	A	T	SNP	GSX1	NM_145657	human	genbank	54_36p	1	provisional	nonsense	c.712	p.K238*	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ATP5EP2	432369	genome.wustl.edu	36	13	27417532	27417532	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27417532	27417532	G	T	SNP	ATP5EP2	ENST00000381026	human	ensembl	54_36p	1	known	missense	c.136	p.V46L	1	"superfamily_ATP_synth_E,HMMPfam_ATP-synt_Eps"	"superfamily_ATP_synth_E,HMMPfam_ATP-synt_Eps"	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506122	27506122	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27506122	27506122	A	G	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.1844	p.V615A	0.92	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
FLT1	2321	genome.wustl.edu	36	13	27878000	27878000	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27878000	27878000	A	G	SNP	FLT1	NM_002019	human	genbank	54_36p	-1	validated	missense	c.1468	p.F490L	0.11	"superfamily_Immunoglobulin,HMMSmart_SM00409"	###############################################################################################################################################################################################################################################################	-	no_errors
FLT1	2321	genome.wustl.edu	36	13	27906235	27906235	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27906235	27906235	A	T	SNP	FLT1	NM_002019	human	genbank	54_36p	-1	validated	missense	c.636	p.N212K	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
MTUS2	23281	genome.wustl.edu	36	13	28796764	28796764	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	28796764	28796764	G	A	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	1	validated	missense	c.2851	p.A951T	0.07	NULL	NULL	-	no_errors
C13orf26	122046	genome.wustl.edu	36	13	30424879	30424879	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	30424879	30424879	A	C	SNP	C13orf26	NM_152325	human	genbank	54_36p	1	predicted	missense	c.229	p.T77P	0.07	NULL	NULL	-	no_errors
B3GALTL	145173	genome.wustl.edu	36	13	30758859	30758859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	30758859	30758859	C	T	SNP	B3GALTL	NM_194318	human	genbank	54_36p	1	reviewed	missense	c.967	p.H323Y	1	HMMPfam_Fringe	"HMMPfam_Fringe,PatternScan_ER_TARGET"	-	no_errors
FRY	10129	genome.wustl.edu	36	13	31733643	31733643	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31733643	31733643	A	G	SNP	FRY	ENST00000380257	human	ensembl	54_36p	1	known	silent	c.7422	p.L2474	0	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31810178	31810178	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	-	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31810178	31810178	T	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.3686	p.S1230fs	0.94	HMMPfam_BRCA2	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31808402,31813333])"	no_errors
BRCA2	675	genome.wustl.edu	36	13	31810708	31810711	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	AAAG	AAAG	AAAG	-	AAAG	AAAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31810708	31810711	AAAG	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.4216_4219	p.K1406fs	0.382:0.373:0.386:0.064	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31808402,31813333])"	no_errors
BRCA2	675	genome.wustl.edu	36	13	31811404	31811404	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31811404	31811404	A	G	SNP	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	missense	c.4912	p.K1638E	0.82	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31835426	31835441	+	Frame_Shift_Del	DEL	TGAGCGCAAATATATC	TGAGCGCAAATATATC	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	TGAGCGCAAATATATC	TGAGCGCAAATATATC	TGAGCGCAAATATATC	-	TGAGCGCAAATATATC	TGAGCGCAAATATATC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31835426	31835441	TGAGCGCAAATATATC	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.8087_8102	p.S2697fs	0.000:0.000:0.002:0.003:0.004:0.003:0.005:0.002:0.001:0.001:0.001:0.001:0.001:0.001:0.000:0.003	"HMMPfam_BRCA-2_OB1,superfamily_Nucleic_acid_OB"	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31835316,31835670])"	no_errors
N4BP2L2	10443	genome.wustl.edu	36	13	31914881	31914893	+	Frame_Shift_Del	DEL	AAAGAAGGAATAT	AAAGAAGGAATAT	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	AAAGAAGGAATAT	AAAGAAGGAATAT	AAAGAAGGAATAT	-	AAAGAAGGAATAT	AAAGAAGGAATAT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31914881	31914893	AAAGAAGGAATAT	-	DEL	N4BP2L2	NM_033111	human	genbank	54_36p	-1	validated	frame_shift_del	c.1793_1781	p.Y594fs	0.710:0.923:0.954:0.983:0.982:0.982:0.976:0.947:0.842:0.518:0.003:0.004:0.002	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	"(deletion:cds_exon[31914525,31916263])"	no_errors
PDS5B	23047	genome.wustl.edu	36	13	32228035	32228035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	32228035	32228035	G	T	SNP	PDS5B	NM_015032	human	genbank	54_36p	1	validated	missense	c.2997	p.L999F	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook"	-	no_errors
STARD13	90627	genome.wustl.edu	36	13	32614466	32614466	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	32614466	32614466	A	T	SNP	STARD13	NM_178006	human	genbank	54_36p	-1	validated	missense	c.368	p.V123E	1	NULL	"HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
STARD13	90627	genome.wustl.edu	36	13	32637488	32637488	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	32637488	32637488	T	A	SNP	STARD13	NM_178006	human	genbank	54_36p	-1	validated	silent	c.309	p.V103	1	HMMPfam_SAM_2	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34513294	34513294	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	34513294	34513294	G	A	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.519	p.M173I	1	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34528261	34528261	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	34528261	34528261	A	T	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.1087	p.N363Y	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34633998	34633998	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	34633998	34633998	C	T	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.3973	p.R1325W	1	superfamily_ARM repeat	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	35022684	35022684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35022684	35022684	G	C	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.6656	p.R2219P	1	"superfamily_ARM repeat,superfamily_PH domain-like"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
DCLK1	9201	genome.wustl.edu	36	13	35282981	35282981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35282981	35282981	G	A	SNP	DCLK1	NM_004734	human	genbank	54_36p	-1	validated	missense	c.1679	p.A560V	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DCLK1	9201	genome.wustl.edu	36	13	35322904	35322904	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35322904	35322904	G	A	SNP	DCAMKL1	ENST00000379892	human	ensembl	54_36p	-1	known	missense	c.1045	p.R349C	1	NULL	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX"	-	no_errors
CCNA1	8900	genome.wustl.edu	36	13	35914759	35914759	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35914759	35914759	G	A	SNP	CCNA1	NM_003914	human	genbank	54_36p	1	reviewed	missense	c.1355	p.C452Y	0.77	"HMMPfam_Cyclin_C,superfamily_Cyclin-like"	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
RFXAP	5994	genome.wustl.edu	36	13	36292092	36292092	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	36292092	36292092	G	T	SNP	RFXAP	NM_000538	human	genbank	54_36p	1	reviewed	nonsense	c.598	p.E200*	1	NULL	NULL	-	no_errors
POSTN	10631	genome.wustl.edu	36	13	37036662	37036663	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	37036662	37036663	-	T	INS	POSTN	NM_006475	human	genbank	54_36p	-1	validated	frame_shift_ins	c.2467_2466	p.V822fs	0.975:0.976	NULL	"HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554"	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123424	37123424	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	37123424	37123424	G	T	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	missense	c.2057	p.P686Q	1	NULL	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123513	37123513	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	37123513	37123513	G	C	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	silent	c.1968	p.P656	0.99	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
UFM1	51569	genome.wustl.edu	36	13	37826430	37826441	+	Splice_Site	DEL	AGAAGTAAGTAC	AGAAGTAAGTAC	-	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	AGAAGTAAGTAC	AGAAGTAAGTAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	37826430	37826441	AGAAGTAAGTAC	-	DEL	UFM1	NM_016617	human	genbank	54_36p	1	validated	splice_site_del	c.114_117	p.E38fs	1.000:1.000:1.000:1.000	"superfamily_Ubiquitin-like,HMMPfam_Ufm1"	"superfamily_Ubiquitin-like,HMMPfam_Ufm1"	"(deletion:cds_exon[37826376,37826433], intron[37826434,37830229])"	no_errors
FREM2	341640	genome.wustl.edu	36	13	38162383	38162383	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38162383	38162383	G	A	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.2902	p.V968I	0.92	NULL	"HMMSmart_SM00237,HMMPfam_Calx-beta"	-	no_errors
FREM2	341640	genome.wustl.edu	36	13	38256814	38256814	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38256814	38256814	T	C	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.5888	p.I1963T	0.07	"HMMPfam_Calx-beta,HMMSmart_SM00237"	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
FREM2	341640	genome.wustl.edu	36	13	38328279	38328279	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38328279	38328279	A	T	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.6942	p.E2314D	0.98	"HMMPfam_Calx-beta,HMMSmart_SM00237"	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
STOML3	161003	genome.wustl.edu	36	13	38439003	38439003	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38439003	38439003	C	T	SNP	STOML3	NM_145286	human	genbank	54_36p	-1	validated	missense	c.835	p.V279I	0	NULL	"HMMSmart_PHB,HMMPfam_Band_7,PatternScan_BAND_7"	-	no_errors
KBTBD6	89890	genome.wustl.edu	36	13	40603167	40603167	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	40603167	40603167	A	C	SNP	KBTBD6	NM_152903	human	genbank	54_36p	-1	validated	missense	c.1481	p.M494R	1	superfamily_Gal_oxid_central	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KBTBD7	84078	genome.wustl.edu	36	13	40664661	40664661	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	40664661	40664661	C	G	SNP	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	missense	c.1733	p.W578S	1	superfamily_Galactose oxidase central domain	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
KBTBD7	84078	genome.wustl.edu	36	13	40665783	40665783	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	40665783	40665783	C	A	SNP	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	missense	c.611	p.S204I	0.97	HMMPfam_BACK	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
KIAA0564	23078	genome.wustl.edu	36	13	41147411	41147411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	41147411	41147411	G	C	SNP	KIAA0564	NM_015058	human	genbank	54_36p	-1	validated	missense	c.4349	p.S1450C	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
DGKH	160851	genome.wustl.edu	36	13	41691919	41691919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	41691919	41691919	G	A	SNP	DGKH	NM_178009	human	genbank	54_36p	1	reviewed	missense	c.3431	p.S1144N	1	superfamily_SAM/Pointed domain	###############################################################################################################################################################################################################################################################	-	no_errors
EPSTI1	94240	genome.wustl.edu	36	13	42360622	42360622	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	42360622	42360622	A	G	SNP	EPSTI1	NM_001002264	human	genbank	54_36p	-1	validated	silent	c.997	p.L333	0.24	NULL	NULL	-	no_errors
CPB2	1361	genome.wustl.edu	36	13	45525782	45525782	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	45525782	45525782	T	G	SNP	CPB2	NM_001872	human	genbank	54_36p	-1	reviewed	missense	c.1240	p.K414Q	0.72	superfamily_Zn-dependent exopeptidases	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	-	no_errors
LCP1	3936	genome.wustl.edu	36	13	45614517	45614517	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	45614517	45614517	C	T	SNP	LCP1	NM_002298	human	genbank	54_36p	-1	reviewed	silent	c.1413	p.A471	1	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH"	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2"	-	no_errors
LRCH1	23143	genome.wustl.edu	36	13	46158085	46158085	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	46158085	46158085	A	G	SNP	LRCH1	NM_015116	human	genbank	54_36p	1	provisional	missense	c.730	p.K244E	1	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,PatternScan_PTS_HPR_SER,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
HTR2A	3356	genome.wustl.edu	36	13	46307197	46307197	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	46307197	46307197	G	C	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.1192	p.Q398E	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTR2A	3356	genome.wustl.edu	36	13	46364583	46364583	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	46364583	46364583	A	G	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.556	p.F186L	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MED4	29079	genome.wustl.edu	36	13	47562502	47562502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	47562502	47562502	C	A	SNP	MED4	NM_014166	human	genbank	54_36p	-1	provisional	missense	c.179	p.G60V	1	HMMPfam_VDRIP	HMMPfam_VDRIP	-	no_errors
TRIM13	10206	genome.wustl.edu	36	13	49484660	49484660	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	49484660	49484660	C	T	SNP	TRIM13	NM_001007278	human	genbank	54_36p	1	reviewed	nonsense	c.592	p.Q198*	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57845"	-	no_errors
TRIM13	10206	genome.wustl.edu	36	13	49485278	49485278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	49485278	49485278	G	T	SNP	TRIM13	NM_001007278	human	genbank	54_36p	1	reviewed	missense	c.1210	p.V404L	1	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57845,superfamily_SSF57850"	-	no_errors
INTS6	26512	genome.wustl.edu	36	13	50841316	50841317	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	CC	CC	CC	TT	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	50841316	50841317	CC	TT	DNP	INTS6	NM_012141	human	genbank	54_36p	-1	reviewed	missense	c.2236_2235	p.E746K	0.994:0.986	NULL	"superfamily_vWA-like,PatternScan_DEAD_ATP_HELICASE"	-	no_errors
ALG11	440138	genome.wustl.edu	36	13	51491273	51491273	+	Missense_Mutation	SNP	C	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	13	51491273	51491273	C	G	SNP	ALG11	NM_001004127	human	genbank	54_36p	1	provisional	missense	c.268	p.Q90E	1	superfamily_SSF53756	"superfamily_SSF53756,HMMPfam_Glycos_transf_1"	-	no_errors
THSD1	55901	genome.wustl.edu	36	13	51870016	51870016	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	51870016	51870016	C	A	SNP	THSD1	NM_018676	human	genbank	54_36p	-1	reviewed	missense	c.373	p.V125L	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
CKAP2	26586	genome.wustl.edu	36	13	51946157	51946157	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	51946157	51946157	A	G	SNP	CKAP2	NM_001098525	human	genbank	54_36p	1	validated	missense	c.1742	p.N581S	0	NULL	NULL	-	no_errors
PCDH17	27253	genome.wustl.edu	36	13	57106328	57106328	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	57106328	57106328	G	A	SNP	PCDH17	NM_001040429	human	genbank	54_36p	1	reviewed	silent	c.1647	p.E549	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDH17	27253	genome.wustl.edu	36	13	57106788	57106788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	57106788	57106788	G	A	SNP	PCDH17	NM_001040429	human	genbank	54_36p	1	reviewed	missense	c.2107	p.D703N	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
DIAPH3	81624	genome.wustl.edu	36	13	59305280	59305280	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	59305280	59305280	A	T	SNP	DIAPH3	NM_001042517	human	genbank	54_36p	-1	validated	missense	c.2989	p.F997I	0.99	"superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,PatternScan_RNASE_PANCREATIC,HMMPfam_Drf_DAD"	-	no_errors
DIAPH3	81624	genome.wustl.edu	36	13	59311503	59311503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	59311503	59311503	G	A	SNP	DIAPH3	NM_001042517	human	genbank	54_36p	-1	validated	missense	c.2818	p.P940S	1	"HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	"PatternScan_RNASE_PANCREATIC,HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60883960	60883960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	60883960	60883960	G	T	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	missense	c.2192	p.T731N	1	"superfamily_Cadherin,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60884438	60884438	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	60884438	60884438	G	T	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	silent	c.1714	p.R572	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60884812	60884812	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	60884812	60884812	G	A	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	missense	c.1340	p.P447L	1	"HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDH9	5101	genome.wustl.edu	36	13	65777069	65777069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	65777069	65777069	G	A	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	missense	c.3433	p.P1145S	1	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMPfam_Protocadherin"	-	no_errors
PCDH9	5101	genome.wustl.edu	36	13	66103459	66103459	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	66103459	66103459	C	T	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	missense	c.3224	p.G1075D	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like"	-	no_errors
KLF12	11278	genome.wustl.edu	36	13	73187530	73187530	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	73187530	73187530	T	C	SNP	KLF12	NM_007249	human	genbank	54_36p	-1	validated	missense	c.1003	p.K335E	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC647288	647288	genome.wustl.edu	36	13	74711645	74711645	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	74711645	74711645	A	T	SNP	LOC647288	XR_017516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.87	-	-	-	pseudogene
LOC647288	647288	genome.wustl.edu	36	13	74712540	74712540	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	74712540	74712540	C	A	SNP	LOC647288	XR_017516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC390413	390413	genome.wustl.edu	36	13	76453818	76453818	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76453818	76453818	C	T	SNP	LOC390413	XR_017528	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CLN5	1203	genome.wustl.edu	36	13	76468169	76468169	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76468169	76468169	C	T	SNP	CLN5	NM_006493	human	genbank	54_36p	1	reviewed	silent	c.618	p.F206	1	NULL	NULL	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76527820	76527820	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76527820	76527820	C	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.13407	p.M4469I	1	NULL	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76536761	76536761	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76536761	76536761	G	C	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.12548	p.A4183G	1	NULL	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76638566	76638566	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76638566	76638566	C	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.6125	p.G2042A	1	NULL	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76652359	76652359	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76652359	76652359	T	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.4923	p.R1641S	1	NULL	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76696612	76696612	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76696612	76696612	G	C	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.2800	p.L934V	1	"HMMPfam_RCC1,superfamily_RCC1/BLIP-II"	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
SCEL	8796	genome.wustl.edu	36	13	77065663	77065663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	77065663	77065663	G	C	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	missense	c.706	p.D236H	0.01	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1"	-	no_errors
SLAIN1	122060	genome.wustl.edu	36	13	77216405	77216405	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	77216405	77216405	C	T	SNP	SLAIN1	ENST00000377236	human	ensembl	54_36p	1	known	silent	c.42	p.F14	0	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region
POU4F1	5457	genome.wustl.edu	36	13	78073769	78073769	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	78073769	78073769	C	G	SNP	POU4F1	NM_006237	human	genbank	54_36p	-1	validated	missense	c.1042	p.E348Q	1	superfamily_Homeodomain-like	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
RBM26	64062	genome.wustl.edu	36	13	78831779	78831779	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	78831779	78831779	T	G	SNP	RBM26	NM_022118	human	genbank	54_36p	-1	validated	silent	c.1461	p.S487	1	NULL	"superfamily_SSF101233,HMMPfam_DUF1777,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928,HMMSmart_RRM"	-	no_errors
SPRY2	10253	genome.wustl.edu	36	13	79809658	79809658	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	79809658	79809658	C	T	SNP	SPRY2	NM_005842	human	genbank	54_36p	-1	reviewed	missense	c.184	p.V62I	1	NULL	HMMPfam_Sprouty	-	no_errors
SLITRK6	84189	genome.wustl.edu	36	13	85268362	85268362	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	85268362	85268362	G	T	SNP	SLITRK6	NM_032229	human	genbank	54_36p	-1	validated	missense	c.283	p.L95I	1	"superfamily_L domain-like,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	no_errors
SLITRK5	26050	genome.wustl.edu	36	13	87127446	87127446	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	87127446	87127446	C	A	SNP	SLITRK5	NM_015567	human	genbank	54_36p	1	validated	missense	c.1802	p.T601N	0.9	"superfamily_L domain-like,HMMSmart_SM00082"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT"	-	no_errors
DCT	1638	genome.wustl.edu	36	13	93929317	93929317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	93929317	93929317	C	G	SNP	DCT	NM_001922	human	genbank	54_36p	-1	validated	missense	c.194	p.R65P	0.1	NULL	"superfamily_Di-copper_centre,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2"	-	no_errors
CLDN10	9071	genome.wustl.edu	36	13	94884273	94884273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	94884273	94884273	G	T	SNP	CLDN10	NM_182848	human	genbank	54_36p	1	reviewed	missense	c.185	p.R62L	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
DZIP1	22873	genome.wustl.edu	36	13	95075051	95075051	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	95075051	95075051	A	T	SNP	DZIP1	NM_198968	human	genbank	54_36p	-1	validated	nonsense	c.944	p.L315*	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
DNAJC3	5611	genome.wustl.edu	36	13	95193152	95193152	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	95193152	95193152	T	A	SNP	DNAJC3	ENST00000360638	human	ensembl	54_36p	1	known	missense	c.657	p.S219R	0	NULL	"superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_1"	-	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98158993	98158993	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	98158993	98158993	A	G	SNP	SLC15A1	NM_005073	human	genbank	54_36p	-1	validated	missense	c.1097	p.V366A	1	"superfamily_MFS general substrate transporter,HMMPfam_PTR2"	"superfamily_MFS general substrate transporter,PatternScan_PTR2_1,HMMPfam_PTR2,PatternScan_PTR2_2"	-	no_errors
ENSG00000214100	0	genome.wustl.edu	36	2	130399744	130399744	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	130399744	130399744	C	T	SNP	ENSG00000214100	ENST00000397540	human	ensembl	54_36p	-1	novel	missense	c.14	p.C5Y	0.27	NULL	NULL	-	no_errors
POTEKP	440915	genome.wustl.edu	36	2	132074138	132074138	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	132074138	132074138	C	G	SNP	ACTBL3	ENST00000397487	human	ensembl	54_36p	1	known	missense	c.790	p.L264V	0	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_stop_codon
LOC100128322	100128322	genome.wustl.edu	36	6	132189957	132189957	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132189957	132189957	A	G	SNP	LOC100128322	XR_039280	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100128322	100128322	genome.wustl.edu	36	6	132191190	132191190	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132191190	132191190	G	T	SNP	LOC100128322	XR_039280	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MIR20B	574032	genome.wustl.edu	36	X	133131530	133131530	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	133131530	133131530	T	C	SNP	MIRN20B	ENST00000384977	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1	-	-	-	no_errors
MIR504	574507	genome.wustl.edu	36	X	137577620	137577620	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	137577620	137577620	C	A	SNP	MIRN504	ENST00000385065	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.86	-	-	-	no_errors
PPP2R5C	5527	genome.wustl.edu	36	14	101453935	101453935	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101453935	101453935	T	G	SNP	PPP2R5C	NM_002719	human	genbank	54_36p	1	reviewed	missense	c.1341	p.S447R	1	NULL	"HMMPfam_B56,superfamily_ARM repeat"	-	no_errors
HSP90AA1	3320	genome.wustl.edu	36	14	101621019	101621022	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	TTTC	TTTC	TTTC	-	TTTC	TTTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101621019	101621022	TTTC	-	DEL	HSP90AA1	NM_001017963	human	genbank	54_36p	-1	validated	frame_shift_del	c.1099_1096	p.E366fs	0.847:0.837:0.989:0.994	HMMPfam_HSP90	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[101620771,101621088])"	no_errors
RAGE	5891	genome.wustl.edu	36	14	101765638	101765638	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101765638	101765638	G	C	SNP	RAGE	NM_014226	human	genbank	54_36p	-1	provisional	missense	c.1091	p.S364C	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
RAGE	5891	genome.wustl.edu	36	14	101768721	101768721	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101768721	101768721	T	G	SNP	RAGE	NM_014226	human	genbank	54_36p	-1	provisional	missense	c.770	p.Q257P	0.03	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
BAG5	9529	genome.wustl.edu	36	14	103096679	103096679	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	103096679	103096679	C	A	SNP	BAG5	NM_001015049	human	genbank	54_36p	-1	reviewed	missense	c.699	p.E233D	0.98	"superfamily_BAG domain,HMMPfam_BAG,HMMSmart_SM00264"	"superfamily_BAG domain,HMMPfam_BAG,HMMSmart_SM00264"	-	no_errors
TDRD9	122402	genome.wustl.edu	36	14	103552136	103552136	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	103552136	103552136	G	T	SNP	TDRD9	NM_153046	human	genbank	54_36p	1	validated	silent	c.1434	p.A478	0.03	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	-	no_errors
ADSSL1	122622	genome.wustl.edu	36	14	104282285	104282285	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104282285	104282285	T	A	SNP	ADSSL1	NM_199165	human	genbank	54_36p	1	validated	missense	c.1294	p.F432I	1	"HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540"	"HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540,PatternScan_ADENYLOSUCCIN_SYN_2"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104477692	104477692	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104477692	104477692	A	C	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.15141	p.P5047	0	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104482768	104482768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104482768	104482768	G	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.10065	p.D3355E	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104483748	104483748	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	104483748	104483748	C	G	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.9085	p.E3029Q	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104484262	104484262	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	104484262	104484262	C	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.8571	p.K2857	0.38	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
CDCA4	55038	genome.wustl.edu	36	14	104549113	104549113	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104549113	104549113	G	A	SNP	CDCA4	NM_017955	human	genbank	54_36p	-1	reviewed	missense	c.199	p.R67W	1	HMMPfam_SERTA	HMMPfam_SERTA	-	no_errors
GPR132	29933	genome.wustl.edu	36	14	104589053	104589053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104589053	104589053	G	A	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	missense	c.466	p.R156W	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR132	29933	genome.wustl.edu	36	14	104589084	104589084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104589084	104589084	C	T	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	silent	c.435	p.V145	0.57	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
BRF1	2972	genome.wustl.edu	36	14	104755051	104755051	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104755051	104755051	G	T	SNP	BRF1	NM_001519	human	genbank	54_36p	-1	reviewed	silent	c.1647	p.A549	0.15	NULL	"HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,HMMPfam_BRF1"	-	no_errors
IGHE	3497	genome.wustl.edu	36	14	105138472	105138472	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105138472	105138472	A	T	SNP	IGHE	ENST00000390540	human	ensembl	54_36p	-1	known	missense	c.421	p.Y141N	0	"superfamily_SSF48726,HMMSmart_IGc1,HMMPfam_C1-set"	"superfamily_SSF48726,HMMSmart_IGc1,HMMPfam_C1-set,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHG2	3501	genome.wustl.edu	36	14	105180768	105180768	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	105180768	105180768	C	A	SNP	IGHG2	ENST00000390544	human	ensembl	54_36p	-1	known	nonsense	c.793	p.G265*	0.01	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHD	3495	genome.wustl.edu	36	14	105377897	105377897	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105377897	105377897	G	A	SNP	IGHD	ENST00000390556	human	ensembl	54_36p	-1	known	missense	c.976	p.L326F	0	"superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_ig"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHD	3495	genome.wustl.edu	36	14	105382769	105382771	+	In_Frame_Del	DEL	CTC	CTC	-	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105382769	105382771	CTC	-	DEL	IGHD	ENST00000390556	human	ensembl	54_36p	-1	known	in_frame_del	c.287_285	p.R96in_frame_del	0.000:0.001:0.001	"HMMPfam_C1-set,superfamily_Immunoglobulin"	"PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_ig,superfamily_Immunoglobulin"	"(deletion:cds_exon[105382753,105383055])"	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHM	3507	genome.wustl.edu	36	14	105391761	105391761	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105391761	105391761	C	A	SNP	IGHM	ENST00000390558	human	ensembl	54_36p	-1	known	nonsense	c.1093	p.G365*	1	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211954	0	genome.wustl.edu	36	14	105876484	105876484	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	105876484	105876484	T	C	SNP	ENSG00000211954	ENST00000390614	human	ensembl	54_36p	-1	known	missense	c.124	p.T42A	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211962	0	genome.wustl.edu	36	14	106038188	106038188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	106038188	106038188	C	T	SNP	ENSG00000211962	ENST00000390622	human	ensembl	54_36p	-1	known	missense	c.257	p.R86K	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000215398	0	genome.wustl.edu	36	14	18187185	18187185	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	18187185	18187185	C	A	SNP	ENSG00000215398	ENST00000400208	human	ensembl	54_36p	1	known	nonsense	c.491	p.S164*	0.01	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE"	-	no_start_codon
OR11H12	440153	genome.wustl.edu	36	14	18447700	18447700	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18447700	18447700	G	A	SNP	OR11H12	NM_001013354	human	genbank	54_36p	1	provisional	nonsense	c.107	p.W36*	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR11H12	440153	genome.wustl.edu	36	14	18447878	18447878	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18447878	18447878	G	T	SNP	OR11H12	NM_001013354	human	genbank	54_36p	1	provisional	missense	c.285	p.K95N	0.05	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC642458	642458	genome.wustl.edu	36	14	18558349	18558349	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18558349	18558349	T	A	SNP	LOC642458	XR_016116	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
OR4N2	390429	genome.wustl.edu	36	14	19366355	19366355	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19366355	19366355	A	T	SNP	OR4N2	NM_001004723	human	genbank	54_36p	1	provisional	missense	c.908	p.N303I	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K2	390431	genome.wustl.edu	36	14	19415120	19415120	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19415120	19415120	T	A	SNP	OR4K2	NM_001005501	human	genbank	54_36p	1	provisional	missense	c.854	p.I285K	0.12	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K2	390431	genome.wustl.edu	36	14	19415193	19415193	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19415193	19415193	T	A	SNP	OR4K2	NM_001005501	human	genbank	54_36p	1	provisional	missense	c.927	p.N309K	0	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR4K1	79544	genome.wustl.edu	36	14	19473741	19473741	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19473741	19473741	T	C	SNP	OR4K1	NM_001004063	human	genbank	54_36p	1	provisional	missense	c.76	p.F26L	0.15	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4L1	122742	genome.wustl.edu	36	14	19598093	19598093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19598093	19598093	T	C	SNP	OR4L1	NM_001004717	human	genbank	54_36p	1	provisional	missense	c.50	p.F17S	0.23	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4L1	122742	genome.wustl.edu	36	14	19598948	19598948	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19598948	19598948	G	T	SNP	OR4L1	NM_001004717	human	genbank	54_36p	1	provisional	missense	c.905	p.R302L	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR4N5	390437	genome.wustl.edu	36	14	19682585	19682585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19682585	19682585	C	A	SNP	OR4N5	NM_001004724	human	genbank	54_36p	1	provisional	missense	c.851	p.P284H	0.92	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR11H6	122748	genome.wustl.edu	36	14	19761717	19761717	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19761717	19761717	T	G	SNP	OR11H6	NM_001004480	human	genbank	54_36p	1	provisional	missense	c.9	p.F3L	0	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR11H6	122748	genome.wustl.edu	36	14	19762235	19762235	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19762235	19762235	T	A	SNP	OR11H6	NM_001004480	human	genbank	54_36p	1	provisional	missense	c.527	p.V176D	0.09	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR11H4	390442	genome.wustl.edu	36	14	19781045	19781045	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19781045	19781045	C	T	SNP	OR11H4	NM_001004479	human	genbank	54_36p	1	provisional	silent	c.255	p.S85	0.71	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CCNB1IP1	57820	genome.wustl.edu	36	14	19851594	19851594	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19851594	19851594	A	T	SNP	CCNB1IP1	NM_021178	human	genbank	54_36p	-1	validated	missense	c.504	p.N168K	1	NULL	PatternScan_ZF_RING_1	-	no_errors
PARP2	10038	genome.wustl.edu	36	14	19890252	19890252	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19890252	19890252	A	C	SNP	PARP2	NM_005484	human	genbank	54_36p	1	reviewed	missense	c.545	p.D182A	1	"HMMPfam_WGR,HMMSmart_SM00773"	"HMMPfam_WGR,HMMSmart_SM00773,HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase,HMMPfam_PARP,superfamily_ADP-ribosylation,PatternScan_CASPASE_HIS,PatternScan_CPSASE_2"	-	no_errors
APEX1	328	genome.wustl.edu	36	14	19995128	19995128	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19995128	19995128	G	A	SNP	APEX1	NM_001641	human	genbank	54_36p	1	reviewed	missense	c.578	p.R193H	1	"superfamily_DNase I-like,HMMPfam_Exo_endo_phos"	"superfamily_DNase I-like,HMMPfam_Exo_endo_phos,PatternScan_AP_NUCLEASE_F1_1,PatternScan_AP_NUCLEASE_F1_2,PatternScan_AP_NUCLEASE_F1_3"	-	no_errors
PNP	4860	genome.wustl.edu	36	14	20013201	20013201	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20013201	20013201	A	T	SNP	NP	NM_000270	human	genbank	54_36p	1	reviewed	missense	c.602	p.E201V	1	"superfamily_SSF53167,HMMPfam_PNP_UDP_1"	"superfamily_SSF53167,HMMPfam_PNP_UDP_1,PatternScan_PNP_MTAP_2"	-	no_errors
RNASE11	122651	genome.wustl.edu	36	14	20121957	20121957	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20121957	20121957	T	A	SNP	RNASE11	NM_145250	human	genbank	54_36p	-1	validated	missense	c.517	p.S173C	0	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
RNASE12	493901	genome.wustl.edu	36	14	20128389	20128389	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20128389	20128389	C	T	SNP	RNASE12	NM_001024822	human	genbank	54_36p	-1	provisional	missense	c.334	p.E112K	0	"superfamily_RNaseA,HMMPfam_RnaseA"	"superfamily_RNaseA,HMMPfam_RnaseA"	-	no_errors
RNASE2	6036	genome.wustl.edu	36	14	20493879	20493879	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20493879	20493879	T	C	SNP	RNASE2	NM_002934	human	genbank	54_36p	1	validated	missense	c.109	p.W37R	0.95	"superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA"	"superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC"	-	no_errors
METT11D1	64745	genome.wustl.edu	36	14	20534531	20534531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20534531	20534531	G	A	SNP	METT11D1	NM_001029991	human	genbank	54_36p	1	validated	silent	c.1086	p.K362	0.5	HMMPfam_Rsm22	"HMMPfam_Rsm22,superfamily_SSF53335"	-	no_errors
RPGRIP1	57096	genome.wustl.edu	36	14	20832711	20832711	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20832711	20832711	A	G	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	missense	c.121	p.M41V	0.9	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
CHD8	57680	genome.wustl.edu	36	14	20940373	20940373	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20940373	20940373	G	C	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.3007	p.L1003V	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
CHD8	57680	genome.wustl.edu	36	14	20943240	20943240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20943240	20943240	C	T	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.2438	p.R813H	1	HMMPfam_SNF2_N	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
OR4E2	26686	genome.wustl.edu	36	14	21204039	21204039	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	21204039	21204039	C	G	SNP	OR4E2	NM_001001912	human	genbank	54_36p	1	validated	silent	c.903	p.L301	0.69	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TRA@	6955	genome.wustl.edu	36	14	22001981	22001981	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22001981	22001981	A	C	SNP	TRA@	ENST00000390477	human	ensembl	54_36p	1	known	missense	c.218	p.Q73P	0.91	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C14orf93	60686	genome.wustl.edu	36	14	22535179	22535179	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22535179	22535179	G	C	SNP	C14orf93	NM_021944	human	genbank	54_36p	-1	validated	missense	c.736	p.L246V	1	NULL	NULL	-	no_errors
PSMB5	5693	genome.wustl.edu	36	14	22573899	22573899	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22573899	22573899	A	T	SNP	PSMB5	NM_002797	human	genbank	54_36p	-1	reviewed	missense	c.32	p.L11Q	0.98	NULL	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
ACIN1	22985	genome.wustl.edu	36	14	22619588	22619588	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22619588	22619588	G	C	SNP	ACIN1	NM_014977	human	genbank	54_36p	-1	validated	missense	c.970	p.P324A	0.94	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_RNA-binding domain RBD"	-	no_errors
CEBPE	1053	genome.wustl.edu	36	14	22658083	22658083	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22658083	22658083	A	T	SNP	CEBPE	NM_001805	human	genbank	54_36p	-1	reviewed	missense	c.58	p.F20I	1	NULL	"PatternScan_BZIP_BASIC,HMMSmart_BRLZ,HMMPfam_bZIP_2"	-	no_errors
PABPN1	8106	genome.wustl.edu	36	14	22861342	22861342	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22861342	22861342	A	G	SNP	PABPN1	NM_004643	human	genbank	54_36p	1	reviewed	missense	c.464	p.N155S	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
PABPN1	8106	genome.wustl.edu	36	14	22863304	22863304	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22863304	22863304	G	A	SNP	PABPN1	NM_004643	human	genbank	54_36p	1	reviewed	missense	c.847	p.G283S	1	superfamily_RNA-binding domain RBD	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
IL25	64806	genome.wustl.edu	36	14	22914673	22914673	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22914673	22914673	G	A	SNP	IL25	NM_022789	human	genbank	54_36p	1	reviewed	splice_site	c.279-1	e2-1	1	-	-	-	no_errors
MYH6	4624	genome.wustl.edu	36	14	22926590	22926590	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22926590	22926590	C	G	SNP	MYH6	NM_002471	human	genbank	54_36p	-1	validated	silent	c.4638	p.L1546	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
MYH7	4625	genome.wustl.edu	36	14	22957352	22957352	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22957352	22957352	C	T	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	missense	c.4076	p.R1359H	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
DHRS4	10901	genome.wustl.edu	36	14	23494095	23494095	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23494095	23494095	C	T	SNP	DHRS4	NM_021004	human	genbank	54_36p	1	validated	missense	c.140	p.A47V	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
DHRS4L2	317749	genome.wustl.edu	36	14	23529369	23529369	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23529369	23529369	T	A	SNP	DHRS4L2	NM_198083	human	genbank	54_36p	1	validated	missense	c.267	p.H89Q	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
CPNE6	9362	genome.wustl.edu	36	14	23616333	23616333	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23616333	23616333	C	G	SNP	CPNE6	NM_006032	human	genbank	54_36p	1	reviewed	missense	c.1430	p.S477C	0.99	"superfamily_vWA-like,HMMSmart_SM00327"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine"	-	no_errors
PSME1	5720	genome.wustl.edu	36	14	23677155	23677155	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23677155	23677155	G	T	SNP	PSME1	NM_176783	human	genbank	54_36p	1	reviewed	missense	c.448	p.V150L	1	"superfamily_Prot_act_regA,HMMPfam_PA28_beta"	"superfamily_Prot_act_regA,HMMPfam_PA28_alpha,HMMPfam_PA28_beta"	-	no_errors
IRF9	10379	genome.wustl.edu	36	14	23702488	23702488	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23702488	23702488	G	T	SNP	IRF9	NM_006084	human	genbank	54_36p	1	validated	missense	c.426	p.R142S	0.01	NULL	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3"	-	no_errors
TM9SF1	10548	genome.wustl.edu	36	14	23732000	23732000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23732000	23732000	G	A	SNP	TM9SF1	NM_006405	human	genbank	54_36p	-1	validated	missense	c.661	p.R221C	1	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors
NYNRIN	57523	genome.wustl.edu	36	14	23947546	23947546	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23947546	23947546	C	T	SNP	KIAA1305	NM_025081	human	genbank	54_36p	1	validated	missense	c.830	p.P277L	0.47	NULL	"superfamily_DNA/RNA polymerases,superfamily_Ribonuclease H-like"	-	no_errors
CTSG	1511	genome.wustl.edu	36	14	24112714	24112714	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	24112714	24112714	T	A	SNP	CTSG	NM_001911	human	genbank	54_36p	-1	reviewed	missense	c.737	p.K246I	0	NULL	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
G2E3	55632	genome.wustl.edu	36	14	30128370	30128374	+	Frame_Shift_Del	DEL	AAAGA	AAAGA	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	AAAGA	AAAGA	AAAGA	-	AAAGA	AAAGA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	30128370	30128374	AAAGA	-	DEL	G2E3	NM_017769	human	genbank	54_36p	1	validated	frame_shift_del	c.166_170	p.K56fs	0.997:1.000:1.000:1.000:1.000	NULL	"HMMSmart_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING,superfamily_HECT,HMMPfam_HECT"	"(deletion:cds_exon[30128340,30128441])"	no_errors
HEATR5A	25938	genome.wustl.edu	36	14	30926116	30926116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	30926116	30926116	C	G	SNP	HEATR5A	NM_015473	human	genbank	54_36p	-1	validated	missense	c.271	p.D91H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
ARHGAP5	394	genome.wustl.edu	36	14	31630296	31630296	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	31630296	31630296	G	T	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	missense	c.670	p.V224L	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP5	394	genome.wustl.edu	36	14	31631046	31631046	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	31631046	31631046	G	A	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	missense	c.1420	p.V474I	1	"HMMSmart_SM00441,superfamily_FF domain"	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AKAP6	9472	genome.wustl.edu	36	14	32363306	32363306	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	32363306	32363306	C	G	SNP	AKAP6	NM_004274	human	genbank	54_36p	1	reviewed	missense	c.6536	p.S2179C	0	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2"	-	no_errors
EAPP	55837	genome.wustl.edu	36	14	34068321	34068321	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	34068321	34068321	C	G	SNP	EAPP	NM_018453	human	genbank	54_36p	-1	reviewed	missense	c.464	p.R155T	1	HMMPfam_Eapp_C	HMMPfam_Eapp_C	-	no_errors
BAZ1A	11177	genome.wustl.edu	36	14	34401181	34401181	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	34401181	34401181	T	A	SNP	BAZ1A	NM_013448	human	genbank	54_36p	-1	validated	missense	c.212	p.E71V	1	HMMPfam_WAC_Acf1_DNA_bd	"HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
PPP2R3C	55012	genome.wustl.edu	36	14	34634084	34634084	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	34634084	34634084	G	A	SNP	PPP2R3C	NM_017917	human	genbank	54_36p	-1	provisional	missense	c.896	p.S299L	1	superfamily_EF-hand	"superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
RALGAPA1	253959	genome.wustl.edu	36	14	35078573	35078573	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	35078573	35078573	T	C	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.6178	p.M2060V	1	NULL	"superfamily_SSF111347,HMMPfam_Rap_GAP"	-	no_errors
RALGAPA1	253959	genome.wustl.edu	36	14	35166288	35166288	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	35166288	35166288	C	T	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.5098	p.G1700R	1	superfamily_SSF111347	"HMMPfam_Rap_GAP,superfamily_SSF111347"	-	no_errors
PAX9	5083	genome.wustl.edu	36	14	36202291	36202291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	36202291	36202291	C	T	SNP	PAX9	NM_006194	human	genbank	54_36p	1	validated	missense	c.443	p.P148L	1	NULL	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1"	-	no_errors
CLEC14A	161198	genome.wustl.edu	36	14	37793534	37793534	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	37793534	37793534	T	C	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.1445	p.E482G	0	NULL	"PatternScan_EGF_1,PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMSmart_EGF,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
CLEC14A	161198	genome.wustl.edu	36	14	37794218	37794218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	37794218	37794218	C	A	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.761	p.G254V	0.01	"HMMSmart_EGF,superfamily_SSF57196"	"PatternScan_ASX_HYDROXYL,HMMSmart_CLECT,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196"	-	no_errors
SEC23A	10484	genome.wustl.edu	36	14	38581817	38581817	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	38581817	38581817	A	G	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.1910	p.L637P	1	"superfamily_SSF82754,HMMPfam_Gelsolin"	"superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin"	-	no_errors
LRFN5	145581	genome.wustl.edu	36	14	41430900	41430900	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	41430900	41430900	G	C	SNP	LRFN5	NM_152447	human	genbank	54_36p	1	validated	missense	c.2083	p.A695P	1	NULL	"HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like"	-	no_errors
FSCB	84075	genome.wustl.edu	36	14	44043813	44043813	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	44043813	44043813	C	G	SNP	FSCB	NM_032135	human	genbank	54_36p	-1	validated	missense	c.2128	p.E710Q	0.01	NULL	NULL	-	no_errors
RPL10L	140801	genome.wustl.edu	36	14	46190488	46190488	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	46190488	46190488	C	T	SNP	RPL10L	NM_080746	human	genbank	54_36p	-1	reviewed	missense	c.202	p.A68T	1	"superfamily_Ribosomal_L10e/L16,HMMPfam_Ribosomal_L16"	"superfamily_Ribosomal_L10e/L16,HMMPfam_Ribosomal_L16,PatternScan_RIBOSOMAL_L10E"	-	no_errors
SOS2	6655	genome.wustl.edu	36	14	49655211	49655211	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49655211	49655211	C	A	SNP	SOS2	NM_006939	human	genbank	54_36p	-1	validated	silent	c.3600	p.L1200	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SOS2	6655	genome.wustl.edu	36	14	49693585	49693585	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49693585	49693585	C	G	SNP	SOS2	NM_006939	human	genbank	54_36p	-1	validated	missense	c.1939	p.E647Q	1	"HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP5S	27109	genome.wustl.edu	36	14	49862185	49862185	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49862185	49862185	G	A	SNP	ATP5S	NM_001003803	human	genbank	54_36p	1	reviewed	silent	c.642	p.L214	0.19	NULL	superfamily_RNI-like	-	no_errors
ATP5S	27109	genome.wustl.edu	36	14	49868648	49868648	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49868648	49868648	G	T	SNP	ATP5S	ENST00000358473	human	ensembl	54_36p	1	known	silent	c.645	p.L215	0	NULL	NULL	-	no_errors
NIN	51199	genome.wustl.edu	36	14	50291090	50291090	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	50291090	50291090	C	T	SNP	NIN	NM_020921	human	genbank	54_36p	-1	reviewed	missense	c.4675	p.E1559K	0.99	NULL	"superfamily_EF-hand,HMMPfam_efhand"	-	no_errors
FRMD6	122786	genome.wustl.edu	36	14	51264265	51264265	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	51264265	51264265	A	G	SNP	FRMD6	NM_001042481	human	genbank	54_36p	1	validated	missense	c.1613	p.D538G	1	NULL	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_SSF50729,HMMPfam_FERM_C"	-	no_errors
NID2	22795	genome.wustl.edu	36	14	51604632	51604632	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	51604632	51604632	C	G	SNP	NID2	NM_007361	human	genbank	54_36p	-1	validated	splice_site	c.229-1	e2-1	1	-	-	-	no_errors
PTGDR	5729	genome.wustl.edu	36	14	51804674	51804674	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	51804674	51804674	G	T	SNP	PTGDR	NM_000953	human	genbank	54_36p	1	reviewed	missense	c.392	p.W131L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
DLGAP5	9787	genome.wustl.edu	36	14	54712398	54712398	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	54712398	54712398	A	C	SNP	DLGAP5	NM_014750	human	genbank	54_36p	-1	provisional	missense	c.1141	p.C381G	0.01	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
FBXO34	55030	genome.wustl.edu	36	14	54888821	54888821	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	54888821	54888821	T	A	SNP	FBXO34	NM_017943	human	genbank	54_36p	1	validated	missense	c.1960	p.Y654N	1	NULL	"superfamily_SSF81383,HMMSmart_FBOX,HMMPfam_F-box"	-	no_errors
OTX2	5015	genome.wustl.edu	36	14	56338774	56338774	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	56338774	56338774	T	G	SNP	OTX2	NM_021728	human	genbank	54_36p	-1	reviewed	missense	c.326	p.Q109P	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_TF_Otx"	-	no_errors
EXOC5	10640	genome.wustl.edu	36	14	56768188	56768188	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	56768188	56768188	T	C	SNP	EXOC5	NM_006544	human	genbank	54_36p	-1	reviewed	splice_site	c.939-2	e11-2	1	-	-	-	no_errors
SLC35F4	341880	genome.wustl.edu	36	14	57133217	57133217	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	57133217	57133217	G	T	SNP	SLC35F4	NM_001080455	human	genbank	54_36p	-1	inferred	nonsense	c.152	p.S51*	0	NULL	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_DUF6"	-	no_errors
ARID4A	5926	genome.wustl.edu	36	14	57884344	57884344	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	57884344	57884344	C	G	SNP	ARID4A	NM_002892	human	genbank	54_36p	1	reviewed	missense	c.1399	p.P467A	1	NULL	"HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00298"	-	no_errors
ARID4A	5926	genome.wustl.edu	36	14	57901182	57901182	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	57901182	57901182	A	T	SNP	ARID4A	NM_002892	human	genbank	54_36p	1	reviewed	silent	c.2622	p.G874	0.95	NULL	"HMMSmart_SM00298,HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00333,HMMPfam_RBB1NT"	-	no_errors
C14orf149	112849	genome.wustl.edu	36	14	59015712	59015712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59015712	59015712	C	G	SNP	C14orf149	NM_144581	human	genbank	54_36p	-1	provisional	missense	c.619	p.A207P	1	"superfamily_Diaminopimelate epimerase-like,HMMPfam_Pro_racemase"	"superfamily_Diaminopimelate epimerase-like,HMMPfam_Pro_racemase"	-	no_errors
RTN1	6252	genome.wustl.edu	36	14	59263426	59263426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59263426	59263426	C	T	SNP	RTN1	NM_021136	human	genbank	54_36p	-1	reviewed	missense	c.1729	p.A577T	0	NULL	"HMMPfam_Reticulon,PatternScan_HISTONE_H4"	-	no_errors
RTN1	6252	genome.wustl.edu	36	14	59282307	59282307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59282307	59282307	G	T	SNP	RTN1	NM_021136	human	genbank	54_36p	-1	reviewed	missense	c.887	p.T296N	0.25	NULL	"HMMPfam_Reticulon,PatternScan_HISTONE_H4"	-	no_errors
DHRS7	51635	genome.wustl.edu	36	14	59685860	59685860	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59685860	59685860	C	T	SNP	DHRS7	ENST00000360557	human	ensembl	54_36p	-1	known	nonsense	c.932	p.W311*	0.04	NULL	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
C14orf39	317761	genome.wustl.edu	36	14	59973399	59973399	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59973399	59973399	G	C	SNP	C14orf39	NM_174978	human	genbank	54_36p	-1	validated	missense	c.1681	p.Q561E	1	NULL	NULL	-	no_errors
C14orf39	317761	genome.wustl.edu	36	14	59973446	59973446	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59973446	59973446	G	A	SNP	C14orf39	NM_174978	human	genbank	54_36p	-1	validated	missense	c.1634	p.T545I	1	NULL	NULL	-	no_errors
SLC38A6	145389	genome.wustl.edu	36	14	60615398	60615398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	14	60615398	60615398	G	C	SNP	SLC38A6	ENST00000354886	human	ensembl	54_36p	1	known	missense	c.1408	p.G470R	0	NULL	HMMPfam_Aa_trans	-	no_errors
KCNH5	27133	genome.wustl.edu	36	14	62486626	62486626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	62486626	62486626	C	T	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	silent	c.1347	p.S449	0.56	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
GPHB5	122876	genome.wustl.edu	36	14	62849570	62849570	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	62849570	62849570	T	C	SNP	GPHB5	NM_145171	human	genbank	54_36p	-1	validated	missense	c.217	p.N73D	1	NULL	NULL	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63527028	63527028	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	63527028	63527028	A	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	silent	c.2460	p.K820	0.99	NULL	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH"	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63750739	63750739	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	63750739	63750739	T	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	silent	c.19131	p.S6377	0.04	NULL	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
MTHFD1	4522	genome.wustl.edu	36	14	63956295	63956295	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	63956295	63956295	G	C	SNP	MTHFD1	NM_005956	human	genbank	54_36p	1	reviewed	missense	c.626	p.G209A	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C"	###############################################################################################################################################################################################################################################################	-	no_errors
ZBTB1	22890	genome.wustl.edu	36	14	64059932	64059932	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64059932	64059932	A	T	SNP	ZBTB1	ENST00000394712	human	ensembl	54_36p	1	known	missense	c.1957	p.M653L	1	HMMSmart_ZnF_C2H2	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64309076	64309076	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64309076	64309076	C	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.5528	p.R1843Q	0.99	"HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
GPX2	2877	genome.wustl.edu	36	14	64476019	64476019	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64476019	64476019	G	C	SNP	GPX2	NM_002083	human	genbank	54_36p	-1	reviewed	silent	c.513	p.R171	1	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2"	-	pseudogene
RAB15	376267	genome.wustl.edu	36	14	64486834	64486834	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64486834	64486834	C	A	SNP	RAB15	NM_198686	human	genbank	54_36p	-1	validated	missense	c.507	p.R169S	1	NULL	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1"	-	no_errors
GPHN	10243	genome.wustl.edu	36	14	66595242	66595242	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66595242	66595242	T	A	SNP	GPHN	NM_020806	human	genbank	54_36p	1	reviewed	missense	c.1130	p.I377N	1	"superfamily_MoeA_N,HMMPfam_MoeA_N"	"superfamily_MoCF_biosynth,HMMPfam_MoCF_biosynth,PatternScan_MOCF_BIOSYNTHESIS_1,superfamily_MoeA_N,HMMPfam_MoeA_N,PatternScan_MOCF_BIOSYNTHESIS_2,superfamily_MoeA_C,HMMPfam_MoeA_C"	-	no_errors
GPHN	10243	genome.wustl.edu	36	14	66705481	66705481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66705481	66705481	C	T	SNP	GPHN	NM_020806	human	genbank	54_36p	1	reviewed	missense	c.2054	p.P685L	1	superfamily_MoCF_biosynth	"HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth,HMMPfam_MoeA_N,superfamily_MoeA_N,HMMPfam_MoeA_C,superfamily_MoeA_C,PatternScan_MOCF_BIOSYNTHESIS_1,PatternScan_MOCF_BIOSYNTHESIS_2"	-	no_errors
MPP5	64398	genome.wustl.edu	36	14	66860274	66860274	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66860274	66860274	A	T	SNP	MPP5	NM_022474	human	genbank	54_36p	1	validated	missense	c.1843	p.N615Y	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP6V1D	51382	genome.wustl.edu	36	14	66875111	66875111	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66875111	66875111	C	T	SNP	ATP6V1D	NM_015994	human	genbank	54_36p	-1	reviewed	missense	c.724	p.E242K	1	NULL	HMMPfam_ATP-synt_D	-	no_errors
PLEK2	26499	genome.wustl.edu	36	14	66931898	66931898	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66931898	66931898	G	A	SNP	PLEK2	NM_016445	human	genbank	54_36p	-1	provisional	silent	c.363	p.F121	1	superfamily_SSF50729	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP"	-	no_errors
ZFYVE26	23503	genome.wustl.edu	36	14	67292496	67292496	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	67292496	67292496	C	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.6708	p.K2236N	0.75	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
DCAF5	8816	genome.wustl.edu	36	14	68591701	68591701	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	68591701	68591701	G	T	SNP	WDR22	NM_003861	human	genbank	54_36p	-1	validated	silent	c.1455	p.P485	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like"	-	no_errors
KIAA0247	9766	genome.wustl.edu	36	14	69247448	69247448	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	69247448	69247448	G	A	SNP	KIAA0247	NM_014734	human	genbank	54_36p	1	validated	silent	c.911	p.*304	1	NULL	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
SLC8A3	6547	genome.wustl.edu	36	14	69588460	69588460	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	69588460	69588460	C	A	SNP	SLC8A3	NM_183002	human	genbank	54_36p	-1	reviewed	missense	c.2031	p.K677N	1	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_Na_Ca_ex"	-	no_errors
SIPA1L1	26037	genome.wustl.edu	36	14	71125433	71125433	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	71125433	71125433	C	G	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	1	provisional	missense	c.1091	p.S364C	0.99	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
SIPA1L1	26037	genome.wustl.edu	36	14	71155239	71155239	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	71155239	71155239	A	G	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	1	provisional	missense	c.1511	p.Y504C	1	superfamily_Rap/Ran-GAP (Pfam 02145)	"HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)"	-	no_errors
PAPLN	89932	genome.wustl.edu	36	14	72787459	72787459	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	72787459	72787459	C	A	SNP	PAPLN	NM_173462	human	genbank	54_36p	1	validated	missense	c.557	p.A186E	0.89	HMMPfam_ADAM_spacer1	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMSmart_KU,HMMPfam_Kunitz_BPTI,superfamily_Prot_inh_Kunz-m,PatternScan_BPTI_KUNITZ_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC"	-	no_errors
NUMB	8650	genome.wustl.edu	36	14	72813133	72813133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	72813133	72813133	G	A	SNP	NUMB	NM_001005743	human	genbank	54_36p	-1	reviewed	missense	c.1862	p.A621V	1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,HMMPfam_NumbF"	-	no_errors
PNMA1	9240	genome.wustl.edu	36	14	73249466	73249466	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	73249466	73249466	G	A	SNP	PNMA1	NM_006029	human	genbank	54_36p	-1	validated	silent	c.630	p.A210	0.33	NULL	NULL	-	no_errors
C14orf43	91748	genome.wustl.edu	36	14	73275140	73275140	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	73275140	73275140	C	G	SNP	C14orf43	NM_001043318	human	genbank	54_36p	-1	validated	missense	c.1325	p.C442S	0.94	NULL	"HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
VSX2	338917	genome.wustl.edu	36	14	73781670	73781670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	73781670	73781670	G	A	SNP	VSX2	NM_182894	human	genbank	54_36p	1	validated	missense	c.505	p.E169K	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
KIAA0317	9870	genome.wustl.edu	36	14	74219932	74219932	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74219932	74219932	G	A	SNP	KIAA0317	NM_001039479	human	genbank	54_36p	-1	validated	missense	c.301	p.H101Y	1	superfamily_E set domains	"superfamily_E set domains,HMMPfam_Filamin,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
RPS6KL1	83694	genome.wustl.edu	36	14	74443539	74443539	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74443539	74443539	T	C	SNP	RPS6KL1	NM_031464	human	genbank	54_36p	-1	validated	silent	c.1488	p.E496	0.99	"superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMSmart_MIT,HMMPfam_MIT,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
FOS	2353	genome.wustl.edu	36	14	74817470	74817470	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74817470	74817470	A	C	SNP	FOS	NM_005252	human	genbank	54_36p	1	reviewed	missense	c.733	p.N245H	0	NULL	"HMMSmart_SM00338,HMMPfam_bZIP_2,PatternScan_BZIP_BASIC"	-	no_errors
BATF	10538	genome.wustl.edu	36	14	75061284	75061284	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	75061284	75061284	G	C	SNP	BATF	NM_006399	human	genbank	54_36p	1	reviewed	silent	c.168	p.L56	1	"HMMPfam_bZIP_1,HMMSmart_BRLZ"	"HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC"	-	no_errors
TTLL5	23093	genome.wustl.edu	36	14	75319416	75319416	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	75319416	75319416	C	T	SNP	TTLL5	NM_015072	human	genbank	54_36p	1	validated	missense	c.2776	p.P926S	0.36	NULL	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
ESRRB	2103	genome.wustl.edu	36	14	75975583	75975583	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	75975583	75975583	T	C	SNP	ESRRB	NM_004452	human	genbank	54_36p	1	reviewed	missense	c.134	p.F45S	1	NULL	"superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
SNW1	22938	genome.wustl.edu	36	14	77273125	77273125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	77273125	77273125	G	C	SNP	SNW1	NM_012245	human	genbank	54_36p	-1	reviewed	missense	c.580	p.Q194E	1	HMMPfam_SKIP_SNW	HMMPfam_SKIP_SNW	-	no_errors
C14orf178	283579	genome.wustl.edu	36	14	77305763	77305763	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	77305763	77305763	G	T	SNP	C14orf178	NM_174943	human	genbank	54_36p	1	predicted	missense	c.358	p.A120S	0	NULL	NULL	-	no_errors
NRXN3	9369	genome.wustl.edu	36	14	77779249	77779249	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	77779249	77779249	C	G	SNP	NRXN3	ENST00000330071	human	ensembl	54_36p	1	known	silent	c.60	p.S20	0.46	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_SM00294"	-	no_errors
TSHR	7253	genome.wustl.edu	36	14	80679090	80679090	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	80679090	80679090	G	C	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	missense	c.935	p.R312T	0.96	superfamily_L domain-like	"superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SEL1L	6400	genome.wustl.edu	36	14	81034573	81034573	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	81034573	81034573	C	T	SNP	SEL1L	NM_005065	human	genbank	54_36p	-1	validated	missense	c.910	p.G304S	1	"superfamily_HCP-like,HMMPfam_Sel1,HMMSmart_SM00671"	"superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like"	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85158757	85158757	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	85158757	85158757	G	A	SNP	FLRT2	NM_013231	human	genbank	54_36p	1	reviewed	silent	c.1146	p.Q382	0	NULL	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85159438	85159438	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	85159438	85159438	C	T	SNP	FLRT2	NM_013231	human	genbank	54_36p	1	reviewed	silent	c.1827	p.I609	1	NULL	"HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058"	-	no_errors
KCNK10	54207	genome.wustl.edu	36	14	87799467	87799467	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	87799467	87799467	A	C	SNP	KCNK10	NM_138317	human	genbank	54_36p	-1	reviewed	silent	c.234	p.V78	1	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	-	no_errors
SPATA7	55812	genome.wustl.edu	36	14	87952878	87952878	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	87952878	87952878	T	G	SNP	SPATA7	NM_018418	human	genbank	54_36p	1	validated	silent	c.309	p.T103	0.15	NULL	NULL	-	no_errors
EML5	161436	genome.wustl.edu	36	14	88275019	88275019	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	88275019	88275019	T	C	SNP	EML5	NM_183387	human	genbank	54_36p	-1	validated	silent	c.804	p.P268	1	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
FOXN3	1112	genome.wustl.edu	36	14	88698683	88698683	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	88698683	88698683	G	A	SNP	FOXN3	NM_001085471	human	genbank	54_36p	-1	reviewed	missense	c.1301	p.T434I	1	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
TDP1	55775	genome.wustl.edu	36	14	89499549	89499552	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	AGAA	AGAA	AGAA	-	AGAA	AGAA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	89499549	89499552	AGAA	-	DEL	TDP1	NM_001008744	human	genbank	54_36p	1	reviewed	frame_shift_del	c.338_341	p.K114fs	0.643:0.282:0.061:0.048	NULL	"superfamily_SSF56024,HMMPfam_Tyr-DNA_phospho"	"(deletion:cds_exon[89499212,89499770])"	no_errors
C14orf102	55051	genome.wustl.edu	36	14	89854202	89854202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	89854202	89854202	A	C	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	missense	c.73	p.W25G	1	NULL	"superfamily_Prenyl_trans,HMMPfam_DUF1740"	-	no_errors
TTC7B	145567	genome.wustl.edu	36	14	90266244	90266244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90266244	90266244	G	T	SNP	TTC7B	NM_001010854	human	genbank	54_36p	-1	provisional	missense	c.626	p.P209H	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
RPS6KA5	9252	genome.wustl.edu	36	14	90456321	90456321	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90456321	90456321	G	C	SNP	RPS6KA5	NM_004755	human	genbank	54_36p	-1	validated	missense	c.788	p.S263C	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
CCDC88C	440193	genome.wustl.edu	36	14	90841994	90841994	+	Silent	SNP	C	G	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90841994	90841994	C	G	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	silent	c.3225	p.L1075	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC88C	440193	genome.wustl.edu	36	14	90849506	90849506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90849506	90849506	G	C	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	missense	c.2407	p.L803V	0.89	NULL	superfamily_Prefoldin	-	no_errors
SMEK1	55671	genome.wustl.edu	36	14	91001386	91001386	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91001386	91001386	C	A	SNP	SMEK1	NM_032560	human	genbank	54_36p	-1	validated	missense	c.1752	p.M584I	1	NULL	"superfamily_SSF50729,HMMPfam_DUF625,superfamily_ARM-type_fold"	-	no_errors
FBLN5	10516	genome.wustl.edu	36	14	91417405	91417405	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91417405	91417405	G	C	SNP	FBLN5	NM_006329	human	genbank	54_36p	-1	reviewed	missense	c.973	p.L325V	1	"HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin"	"superfamily_EGF/Laminin,HMMPfam_EGF_CA,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91510766	91510766	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91510766	91510766	G	C	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	silent	c.5532	p.P1844	1	NULL	NULL	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91510767	91510767	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91510767	91510767	G	C	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.5531	p.P1844R	1	NULL	NULL	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91542437	91542437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91542437	91542437	G	A	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.1636	p.L546F	0.32	NULL	NULL	-	no_errors
CPSF2	53981	genome.wustl.edu	36	14	91697797	91697797	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91697797	91697797	T	G	SNP	CPSF2	NM_017437	human	genbank	54_36p	1	validated	missense	c.2305	p.Y769D	1	NULL	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B,HMMPfam_RMMBL"	-	no_errors
SLC24A4	123041	genome.wustl.edu	36	14	92022774	92022774	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	92022774	92022774	C	T	SNP	SLC24A4	NM_153646	human	genbank	54_36p	1	validated	silent	c.1383	p.I461	1	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
KIAA1409	57578	genome.wustl.edu	36	14	93149139	93149139	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93149139	93149139	G	A	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.3467	p.R1156H	1	NULL	NULL	-	no_errors
KIAA1409	57578	genome.wustl.edu	36	14	93190066	93190066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93190066	93190066	C	T	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.5810	p.S1937L	1	NULL	NULL	-	no_errors
OTUB2	78990	genome.wustl.edu	36	14	93580777	93580777	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	93580777	93580777	G	T	SNP	OTUB2	NM_023112	human	genbank	54_36p	1	validated	silent	c.396	p.V132	1	"HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases"	"HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases"	-	no_errors
DDX24	57062	genome.wustl.edu	36	14	93598574	93598574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93598574	93598574	C	G	SNP	DDX24	NM_020414	human	genbank	54_36p	-1	reviewed	missense	c.865	p.G289R	0	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
SERPINA10	51156	genome.wustl.edu	36	14	93820080	93820080	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93820080	93820080	C	A	SNP	SERPINA10	NM_001100607	human	genbank	54_36p	-1	validated	missense	c.1310	p.R437M	1	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"PatternScan_SERPIN,superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	-	no_errors
SERPINA5	5104	genome.wustl.edu	36	14	94128255	94128255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	94128255	94128255	G	A	SNP	SERPINA5	NM_000624	human	genbank	54_36p	1	validated	missense	c.1147	p.V383M	0	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
DICER1	23405	genome.wustl.edu	36	14	94644433	94644433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	94644433	94644433	G	A	SNP	DICER1	NM_030621	human	genbank	54_36p	-1	reviewed	missense	c.2417	p.T806M	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TCL1B	9623	genome.wustl.edu	36	14	95226939	95226939	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	95226939	95226939	C	T	SNP	TCL1B	NM_004918	human	genbank	54_36p	1	validated	silent	c.276	p.P92	0	"HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1"	"HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1"	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95777499	95777499	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	95777499	95777499	A	T	SNP	BDKRB2	NM_000623	human	genbank	54_36p	1	reviewed	missense	c.1081	p.I361F	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95777581	95777581	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	95777581	95777581	G	A	SNP	BDKRB2	NM_000623	human	genbank	54_36p	1	reviewed	missense	c.1163	p.G388E	0	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
uc003vxi.2	0	genome.wustl.edu	36	7	141667577	141667577	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141667577	141667577	T	C	SNP	uc003vxi.2	ENST00000390352	human	ensembl	54_36p	1	known	silent	c.72	p.T24	0	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
uc003vyo.2	0	genome.wustl.edu	36	7	141838407	141838407	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141838407	141838407	C	A	SNP	uc003vyo.2	ENST00000390371	human	ensembl	54_36p	1	known	missense	c.266	p.T89N	0	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211729	0	genome.wustl.edu	36	7	141876211	141876211	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141876211	141876211	A	G	SNP	ENSG00000211729	ENST00000390376	human	ensembl	54_36p	1	known	missense	c.272	p.D91G	0	"superfamily_SSF48726,HMMPfam_V-set"	"superfamily_SSF48726,HMMPfam_V-set"	-	no_stop_codon:bad_bp_length_for_coding_region
uc003vzj.1	0	genome.wustl.edu	36	7	141952571	141952571	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141952571	141952571	A	G	SNP	uc003vzj.1	ENST00000390387	human	ensembl	54_36p	1	known	missense	c.74	p.Q25R	0.75	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
LOC401131	401131	genome.wustl.edu	36	1	142051456	142051456	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	142051456	142051456	A	C	SNP	LOC401131	XR_017704	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.85	-	-	-	no_errors
uc003wae.2	0	genome.wustl.edu	36	7	142108338	142108338	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142108338	142108338	T	C	SNP	uc003wae.2	ENST00000390400	human	ensembl	54_36p	1	known	silent	c.117	p.F39	0	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000208891	0	genome.wustl.edu	36	4	142438465	142438465	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	142438465	142438465	C	G	SNP	ENSG00000208891	ENST00000386156	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
PDIA3P	171423	genome.wustl.edu	36	1	145116736	145116736	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145116736	145116736	G	T	SNP	PDIA3P	NR_002305	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100128116	100128116	genome.wustl.edu	36	5	146067018	146067018	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	146067018	146067018	C	G	SNP	LOC100128116	XR_039194	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MIR513A1	574509	genome.wustl.edu	36	X	146102784	146102784	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	146102784	146102784	G	T	SNP	MIRN513A1	ENST00000385138	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.3	-	-	-	no_errors
uc002goi.1	0	genome.wustl.edu	36	17	14623918	14623918	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	14623918	14623918	A	T	SNP	uc002goi.1	ENST00000379640	human	ensembl	54_36p	-1	known	nonsense	c.294	p.C98*	0	NULL	NULL	-	no_errors
LOC100131547	100131547	genome.wustl.edu	36	12	14658721	14658721	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	12	14658721	14658721	A	G	SNP	LOC100131547	XM_001722468	human	genbank	54_36p	1	model	splice_site	c.109-2	e3-2	0	-	-	-	no_errors
PABPC1P2	728773	genome.wustl.edu	36	2	147062247	147062247	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	147062247	147062247	T	C	SNP	PABPCP2	ENST00000359464	human	ensembl	54_36p	1	known	silent	c.237	p.N79	0.53	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
PABPC1P2	728773	genome.wustl.edu	36	2	147062571	147062571	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	147062571	147062571	A	C	SNP	PABPCP2	ENST00000359464	human	ensembl	54_36p	1	known	missense	c.561	p.L187F	1	superfamily_SSF54928	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
DRD5P2	1818	genome.wustl.edu	36	1	147170059	147170059	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	147170059	147170059	G	A	SNP	DRD5P2	ENST00000331689	human	ensembl	54_36p	1	known	missense	c.442	p.A148T	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_start_codon:no_stop_codon
LOC643438	643438	genome.wustl.edu	36	7	147965567	147965567	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	147965567	147965567	C	T	SNP	LOC643438	XR_015310	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	no_errors
uc003wgu.1	0	genome.wustl.edu	36	7	149614437	149614437	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	149614437	149614437	G	T	SNP	uc003wgu.1	ENST00000252071	human	ensembl	54_36p	-1	known	missense	c.423	p.D141E	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268"	-	no_errors
TARSL2	123283	genome.wustl.edu	36	15	100043728	100043728	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	100043728	100043728	G	A	SNP	TARSL2	NM_152334	human	genbank	54_36p	-1	validated	missense	c.1381	p.L461F	1	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b"	"HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
OR4F6	390648	genome.wustl.edu	36	15	100163773	100163773	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	100163773	100163773	A	T	SNP	OR4F6	NM_001005326	human	genbank	54_36p	1	provisional	missense	c.328	p.T110S	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4G2P	26680	genome.wustl.edu	36	15	100285023	100285023	+	Silent	SNP	A	G	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	100285023	100285023	A	G	SNP	OR4G2P	ENST00000328113	human	ensembl	54_36p	-1	known	silent	c.345	p.N115	0.03	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RHPN2P1	646090	genome.wustl.edu	36	15	18693880	18693880	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18693880	18693880	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
RHPN2P1	646090	genome.wustl.edu	36	15	18694021	18694021	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18694021	18694021	T	A	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RHPN2P1	646090	genome.wustl.edu	36	15	18722625	18722625	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18722625	18722625	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC646139	646139	genome.wustl.edu	36	15	18981653	18981653	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	18981653	18981653	C	A	SNP	LOC646139	XR_037550	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000181984	0	genome.wustl.edu	36	15	19037934	19037934	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	19037934	19037934	G	A	SNP	ENSG00000181984	ENST00000318268	human	ensembl	54_36p	1	known	silent	c.1650	p.V550	0	NULL	NULL	-	no_errors
OR4M2	390538	genome.wustl.edu	36	15	19870123	19870123	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19870123	19870123	C	A	SNP	OR4M2	NM_001004719	human	genbank	54_36p	1	provisional	missense	c.184	p.L62M	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR4N4	283694	genome.wustl.edu	36	15	19884234	19884234	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19884234	19884234	C	A	SNP	OR4N4	NM_001005241	human	genbank	54_36p	1	provisional	nonsense	c.398	p.S133*	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4N4	283694	genome.wustl.edu	36	15	19884684	19884684	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19884684	19884684	A	T	SNP	OR4N4	NM_001005241	human	genbank	54_36p	1	provisional	missense	c.848	p.N283I	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC388076	388076	genome.wustl.edu	36	15	19941744	19941744	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19941744	19941744	G	A	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.467	p.A156V	1	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
LOC388076	388076	genome.wustl.edu	36	15	19941836	19941836	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19941836	19941836	C	G	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.375	p.K125N	1	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
CYFIP1	23191	genome.wustl.edu	36	15	20481213	20481213	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	20481213	20481213	G	A	SNP	CYFIP1	NM_014608	human	genbank	54_36p	1	validated	missense	c.446	p.R149K	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
CYFIP1	23191	genome.wustl.edu	36	15	20520687	20520687	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	20520687	20520687	G	A	SNP	CYFIP1	NM_014608	human	genbank	54_36p	1	validated	missense	c.2472	p.M824I	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
SNRPN	6638	genome.wustl.edu	36	15	22774522	22774522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	22774522	22774522	C	G	SNP	SNRPN	NM_003097	human	genbank	54_36p	1	reviewed	missense	c.649	p.P217A	1	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
SNORD116-6	100033418	genome.wustl.edu	36	15	22861302	22861302	+	RNA	DEL	G	G	-	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	22861302	22861302	G	-	DEL	SNORD116-6	NR_003321	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	"(deletion:rna[22861265,22861362])"	no_errors
GABRA5	2558	genome.wustl.edu	36	15	24679590	24679590	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	24679590	24679590	A	T	SNP	GABRA5	ENST00000335625	human	ensembl	54_36p	1	known	missense	c.290	p.D97V	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
OCA2	4948	genome.wustl.edu	36	15	25674149	25674149	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	25674149	25674149	C	A	SNP	OCA2	NM_000275	human	genbank	54_36p	-1	reviewed	missense	c.2497	p.V833L	0.57	NULL	HMMPfam_CitMHS	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26110869	26110869	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26110869	26110869	G	C	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.8284	p.R2762G	1	superfamily_Galactose-binding domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26132886	26132886	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26132886	26132886	G	A	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	silent	c.6486	p.L2162	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26184666	26184666	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26184666	26184666	C	T	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.1648	p.G550R	1	"HMMPfam_RCC1,superfamily_RCC1/BLIP-II"	###############################################################################################################################################################################################################################################################	-	no_errors
LOC653720	653720	genome.wustl.edu	36	15	26752020	26752020	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26752020	26752020	C	T	SNP	LOC653720	XM_001724258	human	genbank	54_36p	-1	model	missense	c.506	p.R169H	0.82	NULL	NULL	-	no_errors
TJP1	7082	genome.wustl.edu	36	15	27799406	27799406	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	27799406	27799406	T	A	SNP	TJP1	NM_003257	human	genbank	54_36p	-1	validated	missense	c.2870	p.E957V	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218"	-	no_errors
LOC400347	400347	genome.wustl.edu	36	15	29533346	29533346	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	29533346	29533346	G	A	SNP	LOC400347	XR_016518	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.48	-	-	-	pseudogene
CHRNA7	1139	genome.wustl.edu	36	15	30237995	30237995	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	30237995	30237995	C	T	SNP	CHRNA7	NM_000746	human	genbank	54_36p	1	reviewed	missense	c.689	p.T230M	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,superfamily_Neu_channel_TM"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
RYR3	6263	genome.wustl.edu	36	15	31837038	31837038	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	31837038	31837038	C	A	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	missense	c.8654	p.P2885H	1	NULL	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
ZNF770	54989	genome.wustl.edu	36	15	33061340	33061340	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	33061340	33061340	G	A	SNP	ZNF770	NM_014106	human	genbank	54_36p	-1	validated	missense	c.1588	p.P530S	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MEIS2	4212	genome.wustl.edu	36	15	35177473	35177473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	35177473	35177473	C	T	SNP	MEIS2	NM_170675	human	genbank	54_36p	-1	reviewed	missense	c.232	p.D78N	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
FAM98B	283742	genome.wustl.edu	36	15	36544776	36544776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	36544776	36544776	G	C	SNP	FAM98B	NM_173611	human	genbank	54_36p	1	validated	missense	c.232	p.E78Q	1	HMMPfam_DUF2465	HMMPfam_DUF2465	-	no_errors
RASGRP1	10125	genome.wustl.edu	36	15	36591122	36591122	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	36591122	36591122	G	A	SNP	RASGRP1	NM_005739	human	genbank	54_36p	-1	reviewed	missense	c.941	p.S314L	1	"superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147"	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	-	no_errors
FSIP1	161835	genome.wustl.edu	36	15	37843406	37843406	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	37843406	37843406	G	T	SNP	FSIP1	NM_152597	human	genbank	54_36p	-1	validated	missense	c.467	p.S156Y	0.14	NULL	NULL	-	no_errors
BUB1B	701	genome.wustl.edu	36	15	38297101	38297101	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38297101	38297101	C	T	SNP	BUB1B	NM_001211	human	genbank	54_36p	1	validated	missense	c.2791	p.R931W	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMPfam_Mad3_BUB1_I,HMMSmart_SM00777"	-	no_errors
PLCB2	5330	genome.wustl.edu	36	15	38382800	38382800	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38382800	38382800	T	G	SNP	PLCB2	NM_004573	human	genbank	54_36p	-1	validated	missense	c.212	p.K71T	1	NULL	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
C15orf23	90417	genome.wustl.edu	36	15	38471498	38471498	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38471498	38471498	G	A	SNP	C15orf23	NM_033286	human	genbank	54_36p	1	validated	silent	c.804	p.K268	1	NULL	NULL	-	no_errors
IVD	3712	genome.wustl.edu	36	15	38487138	38487138	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38487138	38487138	A	G	SNP	IVD	NM_002225	human	genbank	54_36p	1	reviewed	missense	c.154	p.T52A	1	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N"	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2"	-	no_errors
C15orf57	90416	genome.wustl.edu	36	15	38642302	38642302	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38642302	38642302	C	G	SNP	C15orf57	NM_001080791	human	genbank	54_36p	-1	validated	missense	c.232	p.A78P	1	NULL	NULL	-	no_errors
GCHFR	2644	genome.wustl.edu	36	15	38846742	38846742	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38846742	38846742	C	T	SNP	GCHFR	NM_005258	human	genbank	54_36p	1	reviewed	missense	c.158	p.P53L	1	"HMMPfam_GFRP,superfamily_GTP cyclohydrolase I feedback regulatory protein GFRP"	"HMMPfam_GFRP,superfamily_GTP cyclohydrolase I feedback regulatory protein GFRP"	-	no_errors
SPINT1	6692	genome.wustl.edu	36	15	38933038	38933038	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38933038	38933038	G	C	SNP	SPINT1	NM_181642	human	genbank	54_36p	1	reviewed	missense	c.663	p.Q221H	1	NULL	"HMMPfam_MANEC,HMMSmart_SM00765,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
VPS18	57617	genome.wustl.edu	36	15	38980364	38980364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38980364	38980364	G	A	SNP	VPS18	NM_020857	human	genbank	54_36p	1	reviewed	missense	c.2056	p.A686T	1	superfamily_ARM repeat	"HMMPfam_Pep3_Vps18,superfamily_ARM repeat"	-	no_errors
NDUFAF1	51103	genome.wustl.edu	36	15	39474438	39474438	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39474438	39474438	T	G	SNP	NDUFAF1	NM_016013	human	genbank	54_36p	-1	validated	missense	c.670	p.K224Q	0.01	HMMPfam_CIA30	HMMPfam_CIA30	-	no_errors
RTF1	23168	genome.wustl.edu	36	15	39559776	39559776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39559776	39559776	G	C	SNP	RTF1	NM_015138	human	genbank	54_36p	1	validated	missense	c.1612	p.D538H	1	NULL	"HMMSmart_Plus3,HMMPfam_Plus-3"	-	no_errors
TYRO3	7301	genome.wustl.edu	36	15	39657412	39657412	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39657412	39657412	C	G	SNP	TYRO3	NM_006293	human	genbank	54_36p	1	provisional	silent	c.2319	p.P773	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39776435	39776435	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39776435	39776435	C	A	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	missense	c.1935	p.S645R	0.05	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353"	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39828708	39828709	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	-	-	-	A	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39828708	39828709	-	A	INS	MGA	NM_001080541	human	genbank	54_36p	1	provisional	frame_shift_ins	c.5758_5759	p.V1920fs	1.000:1.000	NULL	"HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,superfamily_HLH helix-loop-helix DNA-binding domain,PatternScan_TBOX_2"	-	no_errors
EHD4	30844	genome.wustl.edu	36	15	40033268	40033268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40033268	40033268	G	A	SNP	EHD4	NM_139265	human	genbank	54_36p	-1	provisional	silent	c.399	p.N133	1	"superfamily_SSF52540,HMMPfam_Dynamin_N"	"superfamily_SSF52540,HMMPfam_Dynamin_N,superfamily_SSF47473,HMMSmart_EH,PatternScan_EF_HAND_1"	-	no_errors
PLA2G4F	255189	genome.wustl.edu	36	15	40223586	40223586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40223586	40223586	C	G	SNP	PLA2G4F	NM_213600	human	genbank	54_36p	-1	provisional	missense	c.2024	p.C675S	0.83	"HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	-	no_errors
TMEM87A	25963	genome.wustl.edu	36	15	40316920	40316920	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40316920	40316920	A	T	SNP	TMEM87A	NM_015497	human	genbank	54_36p	-1	validated	splice_site	c.868+2	e9+2	1	-	-	-	no_errors
ZFP106	64397	genome.wustl.edu	36	15	40529814	40529814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40529814	40529814	C	T	SNP	ZFP106	NM_022473	human	genbank	54_36p	-1	provisional	missense	c.1879	p.E627K	0	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_ZnF_C2H2,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMSmart_PQQ,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CDAN1	146059	genome.wustl.edu	36	15	40804705	40804705	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40804705	40804705	C	G	SNP	CDAN1	NM_138477	human	genbank	54_36p	-1	validated	missense	c.3487	p.E1163Q	0.96	NULL	NULL	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41455704	41455704	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41455704	41455704	T	C	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	silent	c.195	p.H65	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41459634	41459634	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41459634	41459634	G	A	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	missense	c.502	p.V168I	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41476736	41476736	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41476736	41476736	A	C	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	missense	c.1204	p.K402Q	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
MAP1A	4130	genome.wustl.edu	36	15	41607649	41607649	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41607649	41607649	C	T	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	missense	c.6686	p.S2229L	0.99	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
PDIA3	2923	genome.wustl.edu	36	15	41845419	41845419	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41845419	41845419	G	T	SNP	PDIA3	NM_005313	human	genbank	54_36p	1	reviewed	missense	c.762	p.L254F	1	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
ELL3	80237	genome.wustl.edu	36	15	41853752	41853752	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41853752	41853752	G	A	SNP	ELL3	NM_025165	human	genbank	54_36p	-1	validated	missense	c.958	p.R320C	0.86	HMMPfam_Occludin_ELL	"HMMPfam_ELL,HMMPfam_Occludin_ELL"	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42740027	42740027	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	42740027	42740027	G	A	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	silent	c.337	p.L113	0.99	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
B2M	567	genome.wustl.edu	36	15	42791037	42791037	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	42791037	42791037	A	G	SNP	B2M	NM_004048	human	genbank	54_36p	1	validated	missense	c.1	p.M1V	0.06	NULL	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
DUOXA1	90527	genome.wustl.edu	36	15	43197528	43197528	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43197528	43197528	C	T	SNP	DUOXA1	NM_144565	human	genbank	54_36p	-1	provisional	silent	c.1023	p.A341	0	NULL	HMMPfam_DuoxA	-	no_errors
SHF	90525	genome.wustl.edu	36	15	43251793	43251793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43251793	43251793	G	T	SNP	SHF	NM_138356	human	genbank	54_36p	-1	validated	missense	c.809	p.P270Q	0.99	NULL	"superfamily_Nucleotidylyl transferase,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43341525	43341525	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43341525	43341525	G	A	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.191	p.S64N	0.02	NULL	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43342663	43342663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43342663	43342663	G	C	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.375	p.K125N	0.01	NULL	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43347163	43347163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43347163	43347163	C	T	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.1076	p.A359V	1	NULL	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SPATA5L1	79029	genome.wustl.edu	36	15	43500622	43500622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43500622	43500622	G	A	SNP	SPATA5L1	NM_024063	human	genbank	54_36p	1	provisional	silent	c.2184	p.P728	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
C15orf48	84419	genome.wustl.edu	36	15	43510545	43510545	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43510545	43510545	G	C	SNP	C15orf48	NM_032413	human	genbank	54_36p	1	validated	missense	c.91	p.A31P	0	HMMPfam_NADH_ub_rd_NUML	HMMPfam_NADH_ub_rd_NUML	-	no_errors
LOC644029	644029	genome.wustl.edu	36	15	45809615	45809615	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	45809615	45809615	C	T	SNP	LOC644029	XR_017397	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.83	-	-	-	pseudogene
MYEF2	50804	genome.wustl.edu	36	15	46245454	46245454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46245454	46245454	C	G	SNP	MYEF2	NM_016132	human	genbank	54_36p	-1	validated	missense	c.493	p.D165H	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
SLC12A1	6557	genome.wustl.edu	36	15	46308807	46308807	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46308807	46308807	A	T	SNP	SLC12A1	NM_000338	human	genbank	54_36p	1	validated	missense	c.854	p.D285V	1	HMMPfam_AA_permease	"HMMPfam_AA_permease_N,HMMPfam_AA_permease"	-	no_errors
FBN1	2200	genome.wustl.edu	36	15	46500294	46500294	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46500294	46500294	G	A	SNP	FBN1	NM_000138	human	genbank	54_36p	-1	reviewed	silent	c.7701	p.D2567	1	"superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179"	###############################################################################################################################################################################################################################################################	-	no_errors
SHC4	399694	genome.wustl.edu	36	15	46914506	46914506	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46914506	46914506	G	T	SNP	SHC4	NM_203349	human	genbank	54_36p	-1	validated	missense	c.1489	p.P497T	1	superfamily_SH2 domain	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
C15orf33	196951	genome.wustl.edu	36	15	47621290	47621290	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	47621290	47621290	A	G	SNP	C15orf33	NM_152647	human	genbank	54_36p	-1	validated	silent	c.753	p.Y251	0.99	NULL	NULL	-	no_errors
ATP8B4	79895	genome.wustl.edu	36	15	48052207	48052207	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	48052207	48052207	T	A	SNP	ATP8B4	NM_024837	human	genbank	54_36p	-1	validated	silent	c.1107	p.A369	0.14	superfamily_SSF81665	"superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3"	-	no_errors
GABPB1	2553	genome.wustl.edu	36	15	48383548	48383549	+	Missense_Mutation	DNP	AC	TA	TA	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	AC	AC	TA	TA	AC	AC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	48383548	48383549	AC	TA	DNP	GABPB1	NM_005254	human	genbank	54_36p	-1	reviewed	missense	c.183_182	p.G61V	0.997:1.000	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
GLDN	342035	genome.wustl.edu	36	15	49474451	49474451	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49474451	49474451	C	T	SNP	GLDN	NM_181789	human	genbank	54_36p	1	validated	silent	c.669	p.S223	1	NULL	"HMMPfam_Collagen,HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49582396	49582396	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49582396	49582396	A	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.2891	p.L964P	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49615243	49615243	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49615243	49615243	A	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.2345	p.F782S	1	HMMSmart_SM00320	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49617139	49617139	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49617139	49617139	T	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	silent	c.1455	p.P485	0.95	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
SCG3	29106	genome.wustl.edu	36	15	49761280	49761280	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49761280	49761280	G	C	SNP	SCG3	NM_013243	human	genbank	54_36p	1	reviewed	silent	c.36	p.V12	1	NULL	NULL	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359091	50359091	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50359091	50359091	C	T	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.211	p.D71N	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359100	50359100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50359100	50359100	C	T	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.202	p.G68S	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359104	50359104	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50359104	50359104	G	A	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	silent	c.198	p.L66	0.99	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO5A	4644	genome.wustl.edu	36	15	50505448	50505448	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50505448	50505448	G	C	SNP	MYO5A	NM_000259	human	genbank	54_36p	-1	reviewed	missense	c.326	p.A109G	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
LOC645693	645693	genome.wustl.edu	36	15	51017784	51017784	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	51017784	51017784	G	T	SNP	LOC645693	XR_017498	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
UNC13C	440279	genome.wustl.edu	36	15	52093232	52093232	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52093232	52093232	T	A	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.840	p.S280R	0.98	NULL	"superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52094558	52094558	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52094558	52094558	A	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	silent	c.2166	p.P722	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52343746	52343746	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52343746	52343746	G	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.3537	p.E1179D	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52647435	52647435	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52647435	52647435	A	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.6104	p.Q2035P	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
RAB27A	5873	genome.wustl.edu	36	15	53308192	53308192	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	53308192	53308192	A	G	SNP	RAB27A	NM_004580	human	genbank	54_36p	-1	reviewed	silent	c.250	p.L84	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
CCPG1	9236	genome.wustl.edu	36	15	53439566	53439566	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	53439566	53439566	A	G	SNP	CCPG1	NM_004748	human	genbank	54_36p	-1	validated	missense	c.1697	p.F566S	0	NULL	NULL	-	no_errors
PRTG	283659	genome.wustl.edu	36	15	53820119	53820119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	53820119	53820119	G	A	SNP	PRTG	NM_173814	human	genbank	54_36p	-1	validated	silent	c.150	p.V50	1	"HMMPfam_I-set,superfamily_SSF48726"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
MNS1	55329	genome.wustl.edu	36	15	54508658	54508658	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	54508658	54508658	A	G	SNP	MNS1	NM_018365	human	genbank	54_36p	-1	reviewed	missense	c.1421	p.I474T	0.98	NULL	NULL	-	no_errors
ZNF280D	54816	genome.wustl.edu	36	15	54758184	54758184	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	54758184	54758184	C	T	SNP	ZNF280D	NM_017661	human	genbank	54_36p	-1	validated	missense	c.1132	p.E378K	1	"HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
TCF12	6938	genome.wustl.edu	36	15	55143311	55143311	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	55143311	55143311	A	G	SNP	TCF12	NM_207036	human	genbank	54_36p	1	reviewed	missense	c.220	p.R74G	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
TCF12	6938	genome.wustl.edu	36	15	55362041	55362041	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	55362041	55362041	G	C	SNP	TCF12	NM_207036	human	genbank	54_36p	1	reviewed	silent	c.2085	p.G695	1	NULL	"HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic"	-	no_errors
CGNL1	84952	genome.wustl.edu	36	15	55518952	55518952	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	55518952	55518952	G	A	SNP	CGNL1	NM_032866	human	genbank	54_36p	1	validated	missense	c.1463	p.G488D	0.09	NULL	HMMPfam_Myosin_tail_1	-	no_errors
LIPC	3990	genome.wustl.edu	36	15	56617868	56617868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	56617868	56617868	C	T	SNP	LIPC	NM_000236	human	genbank	54_36p	1	reviewed	silent	c.133	p.L45	0	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
RNF111	54778	genome.wustl.edu	36	15	57172032	57172032	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	57172032	57172032	A	T	SNP	RNF111	NM_017610	human	genbank	54_36p	1	reviewed	missense	c.2744	p.K915I	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
FAM81A	145773	genome.wustl.edu	36	15	57539488	57539488	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	57539488	57539488	C	G	SNP	FAM81A	NM_152450	human	genbank	54_36p	1	validated	missense	c.85	p.L29V	0.98	NULL	NULL	-	no_errors
BNIP2	663	genome.wustl.edu	36	15	57752127	57752127	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	57752127	57752127	C	A	SNP	BNIP2	NM_004330	human	genbank	54_36p	-1	reviewed	splice_site	c.575+1	e5+1	1	-	-	-	no_errors
ANXA2	302	genome.wustl.edu	36	15	58436718	58436718	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	58436718	58436718	T	G	SNP	ANXA2	NM_001002858	human	genbank	54_36p	-1	reviewed	missense	c.421	p.T141P	1	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
VPS13C	54832	genome.wustl.edu	36	15	60048898	60048898	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60048898	60048898	G	C	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.2803	p.L935V	1	NULL	HMMPfam_DUF1162	-	no_errors
FLJ38723	255180	genome.wustl.edu	36	15	60331396	60331396	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60331396	60331396	A	C	SNP	FLJ38723	XR_041381	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	no_errors
TLN2	83660	genome.wustl.edu	36	15	60918107	60918107	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60918107	60918107	G	A	SNP	TLN2	NM_015059	human	genbank	54_36p	1	reviewed	splice_site	c.7375-1	e55-1	1	-	-	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61727326	61727326	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	61727326	61727326	G	A	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	missense	c.10873	p.H3625Y	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_ARGINASE_2"	###############################################################################################################################################################################################################################################################	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61739125	61739125	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	61739125	61739125	A	C	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	nonsense	c.9287	p.L3096*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61751786	61751786	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	61751786	61751786	T	G	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	silent	c.8007	p.A2669	0.94	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TRIP4	56238	genome.wustl.edu	36	15	62477071	62477071	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	62477071	62477071	G	T	SNP	TRIP4	NM_016213	human	genbank	54_36p	1	validated	splice_site	c.618+1	e4+1	1	-	-	-	no_errors
ZNF609	23060	genome.wustl.edu	36	15	62579042	62579042	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	62579042	62579042	G	A	SNP	ZNF609	NM_015042	human	genbank	54_36p	1	provisional	missense	c.371	p.R124H	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PLEKHO2	80301	genome.wustl.edu	36	15	62944873	62944873	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	62944873	62944873	C	A	SNP	PLEKHO2	NM_025201	human	genbank	54_36p	1	validated	silent	c.1206	p.P402	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63277186	63277186	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63277186	63277186	C	G	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	missense	c.2491	p.E831Q	1	NULL	"PatternScan_HEXAPEP_TRANSFERASES,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63277777	63277777	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63277777	63277777	T	A	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	missense	c.1900	p.T634S	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin"	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63286375	63286375	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63286375	63286375	C	A	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	silent	c.222	p.L74	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin"	-	no_errors
IGDCC3	9543	genome.wustl.edu	36	15	63409183	63409183	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63409183	63409183	C	A	SNP	IGDCC3	NM_004884	human	genbank	54_36p	-1	validated	missense	c.1931	p.G644V	1	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
C15orf44	81556	genome.wustl.edu	36	15	63686706	63686706	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63686706	63686706	G	A	SNP	C15orf44	NM_030800	human	genbank	54_36p	-1	predicted	silent	c.66	p.S22	0.75	superfamily_vWA-like	superfamily_vWA-like	-	no_errors
DIS3L	115752	genome.wustl.edu	36	15	64405758	64405758	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	64405758	64405758	T	G	SNP	DIS3L	NM_133375	human	genbank	54_36p	1	validated	splice_site	c.1952+2	e11+2	1	-	-	-	no_errors
PIAS1	8554	genome.wustl.edu	36	15	66221345	66221345	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	66221345	66221345	C	T	SNP	PIAS1	NM_016166	human	genbank	54_36p	1	reviewed	silent	c.477	p.D159	1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
CORO2B	10391	genome.wustl.edu	36	15	66790129	66790129	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	66790129	66790129	G	A	SNP	CORO2B	NM_006091	human	genbank	54_36p	1	validated	missense	c.338	p.R113Q	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	"HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900"	-	no_errors
GLCE	26035	genome.wustl.edu	36	15	67347845	67347845	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	67347845	67347845	G	T	SNP	GLCE	NM_015554	human	genbank	54_36p	1	validated	silent	c.1062	p.L354	1	NULL	HMMPfam_C5-epim_C	-	no_errors
GLCE	26035	genome.wustl.edu	36	15	67348201	67348201	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	67348201	67348201	C	T	SNP	GLCE	NM_015554	human	genbank	54_36p	1	validated	missense	c.1418	p.A473V	1	HMMPfam_C5-epim_C	HMMPfam_C5-epim_C	-	no_errors
UACA	55075	genome.wustl.edu	36	15	68746196	68746196	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	68746196	68746196	T	C	SNP	UACA	NM_018003	human	genbank	54_36p	-1	validated	missense	c.3881	p.D1294G	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_Pox_A_type_inc"	-	no_errors
KRT8P9	390601	genome.wustl.edu	36	15	68939469	68939469	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	68939469	68939469	C	T	SNP	KRT8P9	XR_017231	human	genbank	54_36p	1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
LRRC49	54839	genome.wustl.edu	36	15	69016209	69016209	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	69016209	69016209	T	G	SNP	LRRC49	NM_017691	human	genbank	54_36p	1	validated	missense	c.767	p.I256R	1	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369"	-	no_errors
THSD4	79875	genome.wustl.edu	36	15	69837379	69837379	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	69837379	69837379	T	G	SNP	THSD4	NM_024817	human	genbank	54_36p	1	provisional	missense	c.2500	p.C834G	1	"HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_ADAM_spacer1,HMMPfam_TSP_1,HMMPfam_PLAC"	-	no_errors
SENP8	123228	genome.wustl.edu	36	15	70219543	70219543	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	70219543	70219543	T	A	SNP	SENP8	NM_145204	human	genbank	54_36p	1	provisional	nonsense	c.525	p.C175*	1	"superfamily_SSF54001,HMMPfam_Peptidase_C48"	"superfamily_SSF54001,HMMPfam_Peptidase_C48"	-	no_errors
HEXA	3073	genome.wustl.edu	36	15	70425947	70425947	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	70425947	70425947	G	A	SNP	HEXA	NM_000520	human	genbank	54_36p	-1	reviewed	silent	c.1305	p.Y435	0.95	"HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	"superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71404829	71404829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	71404829	71404829	C	T	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.1600	p.V534M	1	superfamily_cNMP_binding	"PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1"	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71423026	71423026	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	71423026	71423026	T	A	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.962	p.E321V	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
ISLR	3671	genome.wustl.edu	36	15	72254722	72254722	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72254722	72254722	G	A	SNP	ISLR	NM_005545	human	genbank	54_36p	1	validated	missense	c.470	p.R157H	0.99	"superfamily_SSF52058,HMMSmart_LRR_TYP"	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
CCDC33	80125	genome.wustl.edu	36	15	72347841	72347841	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72347841	72347841	A	T	SNP	CCDC33	NM_025055	human	genbank	54_36p	1	validated	missense	c.535	p.M179L	0.81	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
CCDC33	80125	genome.wustl.edu	36	15	72410091	72410091	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72410091	72410091	G	A	SNP	CCDC33	NM_025055	human	genbank	54_36p	1	validated	silent	c.1491	p.L497	0.57	NULL	"HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
CCDC33	80125	genome.wustl.edu	36	15	72414492	72414492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72414492	72414492	C	A	SNP	CCDC33	NM_182791	human	genbank	54_36p	1	validated	missense	c.1030	p.P344T	0.03	NULL	NULL	-	no_errors
CYP11A1	1583	genome.wustl.edu	36	15	72418703	72418703	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72418703	72418703	G	T	SNP	CYP11A1	NM_000781	human	genbank	54_36p	-1	reviewed	missense	c.1164	p.H388Q	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP11A1	1583	genome.wustl.edu	36	15	72423214	72423214	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72423214	72423214	A	G	SNP	CYP11A1	NM_000781	human	genbank	54_36p	-1	reviewed	silent	c.798	p.H266	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP1A1	1543	genome.wustl.edu	36	15	72799903	72799903	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72799903	72799903	G	T	SNP	CYP1A1	NM_000499	human	genbank	54_36p	-1	reviewed	missense	c.1519	p.Q507K	0.94	superfamily_Cytochrome P450	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP1A2	1544	genome.wustl.edu	36	15	72834381	72834381	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72834381	72834381	C	A	SNP	CYP1A2	NM_000761	human	genbank	54_36p	1	reviewed	missense	c.1450	p.P484T	0.03	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
SCAMP2	10066	genome.wustl.edu	36	15	72928000	72928000	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72928000	72928000	C	G	SNP	SCAMP2	NM_005697	human	genbank	54_36p	-1	reviewed	missense	c.728	p.G243A	1	HMMPfam_SCAMP	HMMPfam_SCAMP	-	no_errors
MPI	4351	genome.wustl.edu	36	15	72975669	72975669	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72975669	72975669	G	T	SNP	MPI	NM_002435	human	genbank	54_36p	1	reviewed	missense	c.794	p.G265V	1	"superfamily_RmlC-like cupins,HMMPfam_PMI_typeI"	"superfamily_RmlC-like cupins,HMMPfam_PMI_typeI,PatternScan_PMI_I_1,PatternScan_PMI_I_2"	-	no_errors
SCAMP5	192683	genome.wustl.edu	36	15	73096050	73096050	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73096050	73096050	G	A	SNP	SCAMP5	NM_138967	human	genbank	54_36p	1	validated	missense	c.200	p.G67E	1	HMMPfam_SCAMP	HMMPfam_SCAMP	-	no_errors
LOC653641	653641	genome.wustl.edu	36	15	73343458	73343458	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73343458	73343458	A	G	SNP	LOC653641	XM_496076	human	genbank	54_36p	1	model	missense	c.545	p.Q182R	1	NULL	NULL	-	no_errors
SNX33	257364	genome.wustl.edu	36	15	73729785	73729785	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73729785	73729785	G	A	SNP	SNX33	NM_153271	human	genbank	54_36p	1	provisional	silent	c.1287	p.Q429	1	HMMPfam_BAR_3_WASP_bdg	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_BAR_3_WASP_bdg"	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73756197	73756197	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73756197	73756197	G	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	silent	c.5718	p.F1906	0.95	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA"	-	no_errors
ENSG00000222964	0	genome.wustl.edu	36	15	73864775	73864775	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	73864775	73864775	C	T	SNP	ENSG00000222964	ENST00000411032	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0.2	-	-	-	no_errors
SGK269	79834	genome.wustl.edu	36	15	75212886	75212886	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	75212886	75212886	C	T	SNP	SGK269	NM_024776	human	genbank	54_36p	-1	validated	missense	c.3593	p.S1198N	1	NULL	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
WDR61	80349	genome.wustl.edu	36	15	76369034	76369034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	76369034	76369034	G	A	SNP	WDR61	NM_025234	human	genbank	54_36p	-1	provisional	missense	c.544	p.L182F	1	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
RASGRF1	5923	genome.wustl.edu	36	15	77126261	77126261	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	77126261	77126261	C	G	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	missense	c.760	p.E254Q	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79339214	79339214	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	79339214	79339214	C	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	missense	c.359	p.A120E	0.03	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79372265	79372265	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	79372265	79372265	G	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	silent	c.1734	p.P578	0	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
STARD5	80765	genome.wustl.edu	36	15	79392760	79392760	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	79392760	79392760	G	T	SNP	STARD5	NM_181900	human	genbank	54_36p	-1	validated	silent	c.534	p.T178	0.93	"superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	"superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
EFTUD1	79631	genome.wustl.edu	36	15	80338515	80338515	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	80338515	80338515	T	C	SNP	EFTUD1	NM_024580	human	genbank	54_36p	-1	validated	missense	c.128	p.N43S	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_EFG_IV,HMMPfam_EFG_C"	-	no_errors
CPEB1	64506	genome.wustl.edu	36	15	81037199	81037199	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81037199	81037199	G	T	SNP	CPEB1	NM_030594	human	genbank	54_36p	-1	reviewed	missense	c.329	p.P110H	1	NULL	superfamily_SSF54928	-	no_errors
AP3B2	8120	genome.wustl.edu	36	15	81128568	81128568	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81128568	81128568	G	T	SNP	AP3B2	NM_004644	human	genbank	54_36p	-1	validated	nonsense	c.2708	p.S903*	1	NULL	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AP3B2	8120	genome.wustl.edu	36	15	81128641	81128641	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81128641	81128641	C	T	SNP	AP3B2	ENST00000261722	human	ensembl	54_36p	-1	known	missense	c.2633	p.R878H	1	superfamily_Clathrin adaptor appendage domain	"HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,superfamily_ARM repeat"	-	no_errors
WHAMM	123720	genome.wustl.edu	36	15	81296867	81296867	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81296867	81296867	G	T	SNP	WHAMM	NM_001080435	human	genbank	54_36p	1	provisional	nonsense	c.2104	p.E702*	0	NULL	HMMPfam_WH2	-	no_errors
WHAMM	123720	genome.wustl.edu	36	15	81299246	81299246	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81299246	81299246	G	A	SNP	WHAMM	NM_001080435	human	genbank	54_36p	1	provisional	silent	c.2334	p.E778	1	NULL	HMMPfam_WH2	-	no_errors
BTBD1	53339	genome.wustl.edu	36	15	81516183	81516183	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81516183	81516183	G	C	SNP	BTBD1	NM_025238	human	genbank	54_36p	-1	reviewed	missense	c.520	p.H174D	1	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_PHR"	-	no_errors
BNC1	646	genome.wustl.edu	36	15	81726708	81726708	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81726708	81726708	G	A	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.319	p.R107C	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	36	15	82279788	82279788	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82279788	82279788	C	G	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.585	p.I195M	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC"	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	36	15	82442256	82442256	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82442256	82442256	C	T	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.2872	p.R958W	0.05	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
LOC642677	642677	genome.wustl.edu	36	15	82513135	82513135	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82513135	82513135	C	T	SNP	LOC642677	XR_036878	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ZSCAN2	54993	genome.wustl.edu	36	15	82964862	82964862	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82964862	82964862	G	C	SNP	ZSCAN2	NM_181877	human	genbank	54_36p	1	reviewed	silent	c.432	p.G144	0.1	HMMSmart_SM00431	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SEC11A	23478	genome.wustl.edu	36	15	83014261	83014261	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83014261	83014261	C	T	SNP	SEC11A	NM_014300	human	genbank	54_36p	-1	provisional	missense	c.533	p.R178H	1	NULL	"superfamily_LexA/Signal peptidase,HMMPfam_Peptidase_S24,PatternScan_SPASE_I_1,PatternScan_SPASE_I_3"	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83128692	83128692	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83128692	83128692	C	T	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	silent	c.1782	p.D594	1	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83143401	83143401	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83143401	83143401	C	T	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	silent	c.3093	p.H1031	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83144123	83144123	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83144123	83144123	G	C	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	missense	c.3184	p.E1062Q	1	HMMSmart_ZnF_C2H2	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ALPK3	57538	genome.wustl.edu	36	15	83201506	83201506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83201506	83201506	G	C	SNP	ALPK3	NM_020778	human	genbank	54_36p	1	validated	missense	c.3139	p.G1047R	0	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
ALPK3	57538	genome.wustl.edu	36	15	83201845	83201845	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83201845	83201845	G	C	SNP	ALPK3	NM_020778	human	genbank	54_36p	1	validated	missense	c.3478	p.D1160H	0.09	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
PDE8A	5151	genome.wustl.edu	36	15	83411368	83411368	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83411368	83411368	G	A	SNP	PDE8A	NM_002605	human	genbank	54_36p	1	validated	silent	c.363	p.L121	1	HMMPfam_Response_reg	"HMMPfam_PDE8,HMMPfam_Response_reg,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDE8A	5151	genome.wustl.edu	36	15	83470593	83470593	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83470593	83470593	A	C	SNP	PDE8A	NM_002605	human	genbank	54_36p	1	validated	missense	c.2237	p.E746A	1	"HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like"	"HMMPfam_Response_reg,HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,HMMPfam_PAS,HMMPfam_PDE8,superfamily_HD-domain/PDEase-like,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
AKAP13	11214	genome.wustl.edu	36	15	84029056	84029056	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	84029056	84029056	G	T	SNP	AKAP13	NM_006738	human	genbank	54_36p	1	reviewed	missense	c.5249	p.S1750I	1	NULL	"superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
KLHL25	64410	genome.wustl.edu	36	15	84112344	84112344	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	84112344	84112344	T	C	SNP	KLHL25	NM_022480	human	genbank	54_36p	-1	validated	missense	c.1702	p.I568V	0.99	"HMMPfam_Kelch_1,HMMSmart_Kelch"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
NTRK3	4916	genome.wustl.edu	36	15	86221209	86221209	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	86221209	86221209	C	A	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	missense	c.2481	p.L827F	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK3	4916	genome.wustl.edu	36	15	86323601	86323601	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	86323601	86323601	G	A	SNP	NTRK3	NM_001007156	human	genbank	54_36p	-1	reviewed	silent	c.1818	p.S606	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_I-set"	-	no_errors
ACAN	176	genome.wustl.edu	36	15	87183079	87183079	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	87183079	87183079	A	G	SNP	ACAN	NM_013227	human	genbank	54_36p	1	reviewed	silent	c.252	p.V84	1	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	###############################################################################################################################################################################################################################################################	-	no_errors
MFGE8	4240	genome.wustl.edu	36	15	87251603	87251603	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	87251603	87251603	C	G	SNP	MFGE8	NM_005928	human	genbank	54_36p	-1	validated	missense	c.214	p.E72Q	0	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like"	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
ABHD2	11057	genome.wustl.edu	36	15	87520209	87520209	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	87520209	87520209	G	C	SNP	ABHD2	NM_007011	human	genbank	54_36p	1	reviewed	missense	c.701	p.C234S	1	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	"superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_UPF0017"	-	no_errors
WDR93	56964	genome.wustl.edu	36	15	88071457	88071457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	88071457	88071457	G	A	SNP	WDR93	NM_020212	human	genbank	54_36p	1	provisional	missense	c.946	p.G316R	0.98	NULL	"superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1"	-	no_errors
ANPEP	290	genome.wustl.edu	36	15	88150390	88150390	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	88150390	88150390	T	C	SNP	ANPEP	NM_001150	human	genbank	54_36p	-1	reviewed	silent	c.429	p.G143	0	"superfamily_SSF63737,HMMPfam_Peptidase_M1"	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE"	-	no_errors
IQGAP1	8826	genome.wustl.edu	36	15	88820975	88820975	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	88820975	88820975	A	G	SNP	IQGAP1	NM_003870	human	genbank	54_36p	1	reviewed	missense	c.2861	p.Q954R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MAN2A2	4122	genome.wustl.edu	36	15	89251066	89251066	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89251066	89251066	C	G	SNP	MAN2A2	NM_006122	human	genbank	54_36p	1	validated	missense	c.928	p.L310V	1	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
UNC45A	55898	genome.wustl.edu	36	15	89290898	89290898	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89290898	89290898	C	T	SNP	UNC45A	NM_018671	human	genbank	54_36p	1	validated	missense	c.1250	p.T417M	1	superfamily_ARM repeat	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_2,superfamily_ARM repeat"	-	no_errors
PRC1	9055	genome.wustl.edu	36	15	89318428	89318428	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89318428	89318428	G	C	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	missense	c.1403	p.P468R	0.15	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
VPS33B	26276	genome.wustl.edu	36	15	89349139	89349139	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89349139	89349139	G	C	SNP	VPS33B	NM_018668	human	genbank	54_36p	-1	reviewed	silent	c.1197	p.L399	0.99	"superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	"superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	-	no_errors
SV2B	9899	genome.wustl.edu	36	15	89570923	89570923	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	89570923	89570923	G	C	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	silent	c.426	p.L142	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SV2B	9899	genome.wustl.edu	36	15	89596149	89596149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89596149	89596149	C	T	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	missense	c.548	p.A183V	1	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
SPATA8	145946	genome.wustl.edu	36	15	95129238	95129238	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	95129238	95129238	T	C	SNP	SPATA8	NM_173499	human	genbank	54_36p	1	provisional	missense	c.205	p.C69R	0	NULL	NULL	-	no_errors
SYNM	23336	genome.wustl.edu	36	15	97490006	97490006	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	97490006	97490006	A	G	SNP	SYNM	NM_145728	human	genbank	54_36p	1	reviewed	missense	c.3917	p.H1306R	0	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C15orf51	196968	genome.wustl.edu	36	15	98149807	98149807	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98149807	98149807	C	A	SNP	C15orf51	NR_003260	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.31	-	-	-	pseudogene
ADAMTS17	170691	genome.wustl.edu	36	15	98512972	98512972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98512972	98512972	C	T	SNP	ADAMTS17	NM_139057	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.G420S	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
LASS3	204219	genome.wustl.edu	36	15	98830675	98830675	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98830675	98830675	C	T	SNP	LASS3	NM_178842	human	genbank	54_36p	-1	validated	missense	c.715	p.D239N	1	"HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	"superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
LINS	55180	genome.wustl.edu	36	15	98938528	98938528	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98938528	98938528	C	A	SNP	LINS1	NM_001040614	human	genbank	54_36p	-1	reviewed	missense	c.43	p.V15L	0.99	NULL	NULL	-	no_errors
LRRK1	79705	genome.wustl.edu	36	15	99383843	99383843	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	99383843	99383843	G	A	SNP	LRRK1	NM_024652	human	genbank	54_36p	1	validated	missense	c.2383	p.D795N	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	###############################################################################################################################################################################################################################################################	-	no_errors
uc002ddh.1	0	genome.wustl.edu	36	16	15115830	15115830	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15115830	15115830	C	T	SNP	uc002ddh.1	ENST00000340301	human	ensembl	54_36p	-1	known	missense	c.1954	p.A652T	0	HMMPfam_NPIP	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_NPIP"	-	no_start_codon
ENSG00000208756	0	genome.wustl.edu	36	3	151278263	151278263	+	RNA	SNP	C	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	151278263	151278263	C	T	SNP	ENSG00000208756	ENST00000386021	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100130646	100130646	genome.wustl.edu	36	3	15150491	15150491	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	15150491	15150491	A	G	SNP	LOC100130646	XR_038601	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
LOC100130935	100130935	genome.wustl.edu	36	X	151647365	151647365	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	151647365	151647365	G	T	SNP	LOC100130935	XM_001721280	human	genbank	54_36p	-1	model	silent	c.114	p.A38	0	NULL	NULL	-	no_errors
ENSG00000184624	0	genome.wustl.edu	36	18	15261452	15261452	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	15261452	15261452	G	A	SNP	ENSG00000184624	ENST00000330020	human	ensembl	54_36p	1	known	silent	c.1239	p.K413	0.75	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_start_codon:no_stop_codon
ENSG00000184624	0	genome.wustl.edu	36	18	15261461	15261461	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	15261461	15261461	T	C	SNP	ENSG00000184624	ENST00000330020	human	ensembl	54_36p	1	known	silent	c.1248	p.H416	1	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_start_codon:no_stop_codon
LOC100132032	100132032	genome.wustl.edu	36	22	15370301	15370301	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	15370301	15370301	C	T	SNP	LOC100132032	XM_001726273	human	genbank	54_36p	1	model	missense	c.91	p.R31W	0.9	NULL	NULL	-	no_errors
LOC100130960	100130960	genome.wustl.edu	36	4	153937093	153937093	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	153937093	153937093	C	T	SNP	LOC100130960	XR_038000	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000215003	0	genome.wustl.edu	36	16	15933071	15933071	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15933071	15933071	A	G	SNP	ENSG00000215003	ENST00000399416	human	ensembl	54_36p	-1	known	missense	c.554	p.L185P	1	NULL	"superfamily_L23_L15e_core,HMMPfam_Ribosomal_L15e"	-	no_errors
LOC642451	642451	genome.wustl.edu	36	16	11028662	11028662	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	11028662	11028662	A	C	SNP	LOC642451	XM_926336	human	genbank	54_36p	1	model	missense	c.308	p.E103A	0.89	"HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e"	"PatternScan_GAPDH,HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30"	-	pseudogene
GSPT1	2935	genome.wustl.edu	36	16	11897968	11897968	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	11897968	11897968	C	A	SNP	GSPT1	NM_002094	human	genbank	54_36p	-1	validated	silent	c.198	p.P66	0.55	NULL	"superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C"	-	no_errors
RUNDC2A	84127	genome.wustl.edu	36	16	12044377	12044377	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	12044377	12044377	A	G	SNP	RUNDC2A	NM_032167	human	genbank	54_36p	1	validated	missense	c.370	p.N124D	1	"HMMPfam_RUN,HMMSmart_SM00593"	"HMMPfam_RUN,HMMSmart_SM00593"	-	no_errors
MKL2	57496	genome.wustl.edu	36	16	14142032	14142043	+	In_Frame_Del	DEL	CTCAGAGTGAAG	CTCAGAGTGAAG	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CTCAGAGTGAAG	CTCAGAGTGAAG	CTCAGAGTGAAG	-	CTCAGAGTGAAG	CTCAGAGTGAAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14142032	14142043	CTCAGAGTGAAG	-	DEL	MKL2	NM_014048	human	genbank	54_36p	1	validated	in_frame_del	c.68_79	p.QSEA24in_frame_del	1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	"(deletion:cds_exon[14141965,14142118])"	no_errors
MKL2	57496	genome.wustl.edu	36	16	14247013	14247013	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14247013	14247013	T	G	SNP	MKL2	NM_014048	human	genbank	54_36p	1	validated	missense	c.1207	p.L403V	0.99	"HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF68906"	"HMMPfam_SAP,HMMSmart_SAP,HMMSmart_RPEL,superfamily_SSF68906"	-	no_errors
PARN	5073	genome.wustl.edu	36	16	14557046	14557046	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14557046	14557046	C	G	SNP	PARN	NM_002582	human	genbank	54_36p	-1	reviewed	missense	c.1284	p.M428I	1	NULL	"HMMPfam_CAF1,superfamily_Ribonuclease H-like,superfamily_R3H domain,HMMPfam_R3H,superfamily_RNA-binding domain RBD,HMMPfam_RNA_bind"	-	no_errors
LOC728138	728138	genome.wustl.edu	36	16	14990025	14990025	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14990025	14990025	C	T	SNP	LOC728138	XM_001128282	human	genbank	54_36p	-1	model	silent	c.1419	p.A473	1	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
C16orf45	89927	genome.wustl.edu	36	16	15516746	15516756	+	Frame_Shift_Del	DEL	CGGGAAGTCTT	CGGGAAGTCTT	-	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	CGGGAAGTCTT	CGGGAAGTCTT	CGGGAAGTCTT	-	CGGGAAGTCTT	CGGGAAGTCTT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15516746	15516756	CGGGAAGTCTT	-	DEL	C16orf45	NM_033201	human	genbank	54_36p	1	validated	frame_shift_del	c.190_200	p.R64fs	1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.998:0.999:1.000	NULL	NULL	"(deletion:cds_exon[15516663,15516786])"	no_errors
NDE1	54820	genome.wustl.edu	36	16	15698143	15698143	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15698143	15698143	C	A	SNP	NDE1	NM_017668	human	genbank	54_36p	1	reviewed	missense	c.872	p.S291Y	0	HMMPfam_NUDE_C	HMMPfam_NUDE_C	-	no_errors
MYH11	4629	genome.wustl.edu	36	16	15743116	15743116	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15743116	15743116	A	T	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	splice_site	c.2673+2	e21+2	1	-	-	-	no_errors
MYH11	4629	genome.wustl.edu	36	16	15748982	15748982	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15748982	15748982	A	G	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.2378	p.I793T	1	"superfamily_SSF52540,HMMSmart_IQ"	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
IFT140	9742	genome.wustl.edu	36	16	1582488	1582488	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	1582488	1582488	G	A	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	missense	c.472	p.R158W	1	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like"	-	no_errors
ABCC1	4363	genome.wustl.edu	36	16	16080820	16080820	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	16080820	16080820	G	C	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	missense	c.2099	p.G700A	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC1	4363	genome.wustl.edu	36	16	16116180	16116180	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	16116180	16116180	C	T	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	missense	c.3136	p.R1046C	1	"HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
XYLT1	64131	genome.wustl.edu	36	16	17119016	17119016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	17119016	17119016	G	C	SNP	XYLT1	NM_022166	human	genbank	54_36p	-1	validated	missense	c.2545	p.P849A	1	NULL	HMMPfam_Branch	-	no_errors
ABCC6P1	653190	genome.wustl.edu	36	16	18493854	18493854	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	18493854	18493854	C	G	SNP	ABCC6P1	NR_003569	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.03	-	-	-	pseudogene
SYT17	51760	genome.wustl.edu	36	16	19102587	19102587	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	19102587	19102587	T	G	SNP	SYT17	NM_016524	human	genbank	54_36p	1	validated	missense	c.568	p.F190V	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SEPX1	51734	genome.wustl.edu	36	16	1930805	1930805	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	1930805	1930805	G	T	SNP	SEPX1	ENST00000399753	human	ensembl	54_36p	-1	known	missense	c.658	p.Q220K	1	NULL	"superfamily_Mss4_like,HMMPfam_SelR"	-	no_errors
GPR139	124274	genome.wustl.edu	36	16	19950734	19950734	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	19950734	19950734	C	A	SNP	GPR139	NM_001002911	human	genbank	54_36p	-1	validated	missense	c.886	p.A296S	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR139	124274	genome.wustl.edu	36	16	19950854	19950854	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	19950854	19950854	G	A	SNP	GPR139	NM_001002911	human	genbank	54_36p	-1	validated	missense	c.766	p.P256S	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
LOC100131046	100131046	genome.wustl.edu	36	16	20074259	20074259	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20074259	20074259	C	T	SNP	LOC100131046	XR_037711	human	genbank	54_36p	1	model	rna	NULL	NULL	0.13	-	-	-	pseudogene
UMOD	7369	genome.wustl.edu	36	16	20256187	20256187	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20256187	20256187	G	C	SNP	UMOD	NM_001008389	human	genbank	54_36p	-1	reviewed	missense	c.1667	p.A556G	1	"HMMPfam_Zona_pellucida,HMMSmart_SM00241"	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
ACSM5	54988	genome.wustl.edu	36	16	20356144	20356144	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20356144	20356144	T	C	SNP	ACSM5	NM_017888	human	genbank	54_36p	1	validated	missense	c.1490	p.V497A	0.99	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ACSM5	54988	genome.wustl.edu	36	16	20356181	20356181	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20356181	20356181	C	G	SNP	ACSM5	NM_017888	human	genbank	54_36p	1	validated	missense	c.1527	p.I509M	1	superfamily_Acetyl-CoA synthetase-like	"HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like"	-	no_errors
ACSM2B	348158	genome.wustl.edu	36	16	20461777	20461777	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20461777	20461777	T	G	SNP	ACSM2B	NM_001105069	human	genbank	54_36p	-1	validated	missense	c.1469	p.E490A	0.98	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
TSC2	7249	genome.wustl.edu	36	16	2076354	2076354	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2076354	2076354	T	G	SNP	TSC2	NM_000548	human	genbank	54_36p	1	reviewed	missense	c.4822	p.Y1608D	1	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	"superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20852261	20852261	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20852261	20852261	C	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.12067	p.E4023Q	1	HMMPfam_Dynein_heavy	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20882203	20882203	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20882203	20882203	C	A	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	nonsense	c.10504	p.E3502*	1	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20882273	20882273	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20882273	20882273	A	C	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.10434	p.C3478W	1	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20888760	20888761	+	Missense_Mutation	DNP	TA	TA	CT	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	TA	TA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	20888760	20888761	TA	CT	DNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.8313_8312	p.L2771Q	0.000:0.847	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20970551	20970551	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20970551	20970551	A	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	silent	c.4179	p.Y1393	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	21000511	21000511	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21000511	21000511	T	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.2916	p.E972D	0.39	HMMPfam_DHC_N2	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TMEM159	57146	genome.wustl.edu	36	16	21098357	21098357	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21098357	21098357	C	T	SNP	TMEM159	NM_020422	human	genbank	54_36p	1	validated	silent	c.465	p.F155	0	NULL	NULL	-	no_errors
METTL9	51108	genome.wustl.edu	36	16	21536719	21536719	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21536719	21536719	C	T	SNP	METTL9	NM_016025	human	genbank	54_36p	1	validated	missense	c.389	p.S130L	1	HMMPfam_DREV	"HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
LOC440345	440345	genome.wustl.edu	36	16	21756262	21756262	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	21756262	21756262	G	A	SNP	LOC440345	XR_015786	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	no_errors
MLST8	64223	genome.wustl.edu	36	16	2198833	2198833	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2198833	2198833	A	G	SNP	GBL	NM_022372	human	genbank	54_36p	1	validated	missense	c.935	p.Q312R	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
VWA3A	146177	genome.wustl.edu	36	16	22051738	22051738	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22051738	22051738	A	G	SNP	VWA3A	NM_173615	human	genbank	54_36p	1	validated	missense	c.1310	p.Y437C	0.96	superfamily_vWA-like	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	-	no_errors
E4F1	1877	genome.wustl.edu	36	16	2222784	2222784	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2222784	2222784	T	G	SNP	E4F1	NM_004424	human	genbank	54_36p	1	reviewed	missense	c.757	p.C253G	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC100131998	100131998	genome.wustl.edu	36	16	22348687	22348687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22348687	22348687	C	T	SNP	LOC100131998	XM_001725049	human	genbank	54_36p	-1	model	missense	c.152	p.G51E	1	HMMPfam_RRN3	HMMPfam_RRN3	-	pseudogene
RNPS1	10921	genome.wustl.edu	36	16	2252307	2252307	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2252307	2252307	C	T	SNP	RNPS1	NM_006711	human	genbank	54_36p	-1	reviewed	missense	c.649	p.E217K	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ABCA3	21	genome.wustl.edu	36	16	2269010	2269010	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2269010	2269010	G	A	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	silent	c.4482	p.C1494	0.99	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
HS3ST2	9956	genome.wustl.edu	36	16	22833913	22833913	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22833913	22833913	C	T	SNP	HS3ST2	NM_006043	human	genbank	54_36p	1	reviewed	silent	c.633	p.A211	1	"superfamily_SSF52540,HMMPfam_Sulfotransfer_1"	"superfamily_SSF52540,HMMPfam_Sulfotransfer_1"	-	no_errors
ABCA3	21	genome.wustl.edu	36	16	2298452	2298452	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2298452	2298452	C	T	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.G429S	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
USP31	57478	genome.wustl.edu	36	16	22987633	22987633	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22987633	22987633	C	T	SNP	USP31	NM_020718	human	genbank	54_36p	-1	validated	silent	c.3294	p.E1098	0.81	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
SCNN1G	6340	genome.wustl.edu	36	16	23113021	23113021	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23113021	23113021	C	T	SNP	SCNN1G	NM_001039	human	genbank	54_36p	1	validated	missense	c.838	p.H280Y	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
SCNN1B	6338	genome.wustl.edu	36	16	23296016	23296016	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23296016	23296016	G	A	SNP	SCNN1B	NM_000336	human	genbank	54_36p	1	validated	missense	c.1300	p.V434M	0	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23614081	23614081	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23614081	23614081	C	A	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	nonsense	c.1885	p.E629*	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23619433	23619433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23619433	23619433	C	T	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	missense	c.1597	p.G533R	0	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564"	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23623881	23623881	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23623881	23623881	G	A	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	silent	c.822	p.G274	1	superfamily_Quinoprotein alcohol dehydrogenase-like	"HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564"	-	no_errors
PRKCB	5579	genome.wustl.edu	36	16	24138795	24138795	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24138795	24138795	G	A	SNP	PRKCB	NM_212535	human	genbank	54_36p	1	reviewed	missense	c.1876	p.D626N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00133,HMMPfam_Pkinase_C"	###############################################################################################################################################################################################################################################################	-	no_errors
RBBP6	5930	genome.wustl.edu	36	16	24467772	24467772	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24467772	24467772	G	A	SNP	RBBP6	NM_006910	human	genbank	54_36p	1	reviewed	missense	c.272	p.R91Q	1	NULL	"HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00184"	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24708914	24708914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24708914	24708914	C	T	SNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.1450	p.R484C	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24710529	24710530	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24710529	24710530	GG	TT	DNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.3065_3066	p.W1022F	1.000:1.000	HMMPfam_Ago_hook	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24712301	24712301	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24712301	24712301	G	T	SNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.3182	p.G1061V	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
SLC5A11	115584	genome.wustl.edu	36	16	24809842	24809842	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24809842	24809842	G	T	SNP	SLC5A11