biojava org.biojava 3.0.5 4.0.0 biojava3-aa-prop biojava3-aa-prop http://www.biojava.org org.apache.maven.plugins maven-assembly-plugin AAProperties true org.biojava3.aaproperties.CommandPrompt jar-with-dependencies ${project.basedir}/src true make-assembly package single org.biojava biojava3-core 3.0.5 org.biojava biojava3-structure 3.0.5 junit junit test