identifier	name	description	resources	author_names	author_orcids
0000001	"Resources mentioned in ""Sharing biological data: why, when, and how"""	These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible.	biostudies|bmrb|cellimage|ega.dataset|ega.study|emdb|empiar|genbank|geo|idr|insdc.sra|massive|panorama|pdb|peptideatlas.dataset|pride|ssbd.dataset|ssbd.project	Charles Tapley Hoyt	0000-0003-4423-4370
0000002	Semantic Web Context	Resources used in the semantic web, drawing from lists in [BioContext](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) and [LinkML](https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/linked_data.curated.yaml) as well as W3C recommendations.	ac|bibo|dc|dcat|dcterms|dctypes|doap|faldo|foaf|idot|oa|oboinowl|oslc|owl|pav|prov|qb|qudt|rdf|rdfs|schema|sh|shex|skos|skosxl|swrl|vann|void|xsd	Charles Tapley Hoyt	0000-0003-4423-4370
0000003	ChEBI Data Sources	"The data sources used in xrefs in the ChEBI ontology. More information in the ""Data Sources"" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx)."	chebi|chemidplus|come|drugbank|ecmdb|eurofir|google.patent|hmdb|kegg.compound|kegg.drug|kegg.glycan|knapsack|lincs.smallmolecule|lipidmaps|metacyc.compound|molbase.sheffield|pdb|pdb-ccd|pesticides|resid|smid|umbbd.compound|webelements|ymdb	Charles Tapley Hoyt	0000-0003-4423-4370
0000004	International Classifications of Diseases	This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions.	icd10|icd10cm|icd10pcs|icd11|icd9|icd9cm|icdo	Charles Tapley Hoyt	0000-0003-4423-4370
0000005	Allen Institute Ontologies	This collection contains various brain atlases from the Allen Institute.	dhba|dmba|hba|mba|pba	Charles Tapley Hoyt	0000-0003-4423-4370
0000006	SPAR Ontologies	The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF.	bido|biro|c4o|cito|datacite|deo|doco|fabio|frapo|pso|puro|pwo|scoro	Charles Tapley Hoyt	0000-0003-4423-4370
0000007	Publication Provenance Prefixes	Prefixes useful in annotating documentation provenance.	arxiv|doi|pmc|pubmed	Charles Tapley Hoyt	0000-0003-4423-4370
0000008	ASKEM Epidemiology Prefixes	Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project.	bfo|caro|doi|doid|dso|hp|ido|oae|oboinowl|ovae|owl|pmc|pubmed|rdfs|ro|symp|trans|vo	Charles Tapley Hoyt	0000-0003-4423-4370
0000009	FHIR External Terminologies	"Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:

- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))
- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries
- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_
- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_
- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation"	atcc|clinicaltrials|clinvar|cosmic|cpt|cvx|dbsnp|dicom|dsm5|ensembl|hc.din|hc.npn|hgnc|hl7.v2codesystem|hl7.v3codesystem|icd10|icd9|icf|ietf.language|imgt.hla|iso.3166|loinc|lrg|ncit|ndc|ndfrt|nucc.taxonomy|omim|pharmgkb.gene|pubmed|radlex|refseq|rxnorm|snomedct|so|ucum|unii	Charles Tapley Hoyt	0000-0003-4423-4370
0000010	Global Biodata Coalition - Global Core Biodata Resources	"The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:

- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)
- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)
- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)
- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)
- [STRING](https://string-db.org/) (uses UniProt)"	agrkb|bacdive|brenda|brenda.ligand|brenda.ligandgroup|bto|chebi|chembl|civic.aid|civic.did|civic.eid|civic.gid|civic.sid|civic.tid|civic.vid|ecocyc|ena.embl|ensembl|eupath|flybase|gbif|gnomad|go|hgnc|interpro|mgi|orphanet|orphanet.ordo|panther.family|panther.node|panther.pathway|panther.pthcmp|pdb|pharmgkb.disease|pharmgkb.drug|pharmgkb.gene|pharmgkb.pathways|pmc|pombase|px|reactome|rgd|rhea|sgd|ucsc|uniprot|wormbase|zfin	Charles Tapley Hoyt	0000-0003-4423-4370
0000011	NDFI4Cat Collection	"A collection of ontologies relevant for chemistry.

The NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.

A further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).

OntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found."	afo|bfo|cao|chebi|cheminf|chmo|dolce|emmo|emmo.cif|iso15926|nfdi4chem.ontocape|nfdi4chem.osmo|rex|rxno|sbo|voc4cat	 Hendrik Borgelt|Charles Tapley Hoyt	0000-0001-5886-7860|0000-0003-4423-4370
0000012	Clinical Trial Registries	A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)	anzctr|chictr|clinicaltrials|ctis|ctri|drks|euclinicaltrials|hc.trial|irct|isrctn|itmctr|jrct|kcris|lbctr|pactr|phrr|rebec|repec|rpcec|slctr|snctp|tctr|uminctr	Charles Tapley Hoyt	0000-0003-4423-4370
0000013	Software Package Repositories	These resources represent software repositories	cran|crates|npm|packagist|pypi|rubygems	Charles Tapley Hoyt	0000-0003-4423-4370