'0000001': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: 'These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible.' identifier: '0000001' name: 'Resources mentioned in "Sharing biological data: why, when, and how"' resources: - biostudies - bmrb.entry - cellimage - ega.dataset - ega.study - emdb - empiar - genbank - geo - idr - insdc.sra - massive - panorama - pdb - peptideatlas.dataset - pride - ssbd.dataset - ssbd.project '0000002': context: semweb contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: Resources used in the semantic web, drawing from lists in [BioContext](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) and [LinkML](https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/linked_data.curated.yaml) as well as W3C recommendations. identifier: '0000002' name: Semantic Web Context resources: - ac - bibo - dc - dcat - dcterms - dctypes - doap - faldo - foaf - idot - oa - oboinowl - oslc - owl - pav - prov - qb - qudt - rdf - rdfs - schema - sh - shex - skos - skosxl - swrl - vann - void - xsd '0000003': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: The data sources used in xrefs in the ChEBI ontology. More information in the "Data Sources" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx). identifier: '0000003' name: ChEBI Data Sources resources: - chebi - chemidplus - come - drugbank - ecmdb - eurofir - google.patent - hmdb - kegg.compound - kegg.drug - kegg.glycan - knapsack - lincs.smallmolecule - lipidmaps - metacyc.compound - molbase.sheffield - pdb - pdb-ccd - pesticides - resid - smid - umbbd.compound - webelements - ymdb '0000004': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions. identifier: '0000004' name: International Classifications of Diseases resources: - icd10 - icd10cm - icd10pcs - icd11 - icd11.code - icd9 - icd9cm - icdo '0000005': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: This collection contains various brain atlases from the Allen Institute. identifier: '0000005' name: Allen Institute Ontologies resources: - dhba - dmba - hba - mba - pba '0000006': context: spar contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF. identifier: '0000006' name: SPAR Ontologies resources: - bido - biro - c4o - cito - datacite - deo - doco - fabio - frapo - mito - pso - puro - pwo - scoro '0000007': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: Prefixes useful in annotating documentation provenance. identifier: '0000007' name: Publication Provenance Prefixes resources: - arxiv - doi - pmc - pubmed 0000008: contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project. identifier: 0000008 name: ASKEM Epidemiology Prefixes resources: - bfo - caro - doi - doid - dso - hp - ido - oae - oboinowl - ovae - owl - pmc - pubmed - rdfs - ro - symp - trans - vo 0000009: contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: 'Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated: - HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460)) - [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries - [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_ - [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_ - [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation' identifier: 0000009 name: FHIR External Terminologies resources: - atcc - clinicaltrials - clinvar.variation - cosmic.gene - cpt - cvx - dbsnp - dicom - dsm5 - ensembl - hc.din - hc.npn - hgnc - hl7.v2codesystem - hl7.v3codesystem - icd10 - icd9 - icf - ietf.language - imgt.hla - iso.3166 - loinc - lrg - ncit - ndc - ndfrt - nucc.taxonomy - omim - pharmgkb.gene - pubmed - radlex - refseq - rxnorm - snomedct - so - ucum - unii '0000010': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: 'The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it''s not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don''t induce semantic spaces or have simple relationships to prefixes are: - [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.) - [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC) - [GENCODE](https://www.gencodegenes.org/) (uses GenBank) - [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc) - [STRING](https://string-db.org/) (uses UniProt)' identifier: '0000010' name: Global Biodata Coalition - Global Core Biodata Resources resources: - agrkb - bacdive - brenda - brenda.ligand - brenda.ligandgroup - bto - chebi - chembl - civic.aid - civic.did - civic.eid - civic.gid - civic.sid - civic.tid - civic.vid - ecocyc - ena.embl - ensembl - eupath - flybase - gbif - gnomad - go - hgnc - interpro - mgi - orpha - orphanet.ordo - panther.family - panther.node - panther.pathway - panther.pthcmp - pdb - pharmgkb.disease - pharmgkb.drug - pharmgkb.gene - pharmgkb.pathways - pmc - pombase - px - reactome - rgd - rhea - sgd - ucsc - uniprot - wormbase - zfin '0000011': contributors: - email: hendrik.borgelt@tu-dortmund.de github: HendrikBorgelt name: ' Hendrik Borgelt' orcid: 0000-0001-5886-7860 - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: 'A collection of ontologies, controlled vocabularies, and schemas relevant for the NDFI4Cat Consortium. This collection was originally based on the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat). OntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found.' identifier: '0000011' logo: https://www.nfdi.de/wp-content/uploads/2021/06/Logo_Ohne-BG.png maintainers: - email: hendrik.borgelt@tu-dortmund.de github: HendrikBorgelt name: ' Hendrik Borgelt' orcid: 0000-0001-5886-7860 - email: alexander.behr@tu-dortmund.de github: Amberlamps name: Alexander Behr orcid: 0000-0003-4620-8248 - email: david.linke@catalysis.de github: dalito name: David Linke orcid: 0000-0002-5898-1820 mappings: - identifier: nfdi4cat prefix: tib.collection name: NFDI4Cat Collection organizations: - name: NFDI4Cat ror: 01k9z4a50 wikidata: Q98380342 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://nfdi4cat.org/services/ontologie-sammlung/ - https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1 - https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat resources: - afo - bao - bfo - cao - chebi - cheminf - chmo - dolce - edam - emmo - emmo.cif - envo - iso15926 - m4i - mop - ms - obi - om - ontocape - osmo - rex - rxno - sbo - voc4cat - worldavatar.compchem - worldavatar.kin '0000012': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/) identifier: '0000012' name: Clinical Trial Registries resources: - anzctr - chictr - clinicaltrials - ctis - ctri - drks - euclinicaltrials - hc.trial - irct - isrctn - itmctr - jrct - kcris - lbctr - pactr - phrr - rebec - repec - rpcec - slctr - snctp - tctr - uminctr '0000013': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: These resources represent software repositories identifier: '0000013' name: Software Package Repositories resources: - cran - crates - npm - packagist - pypi - rubygems '0000014': contributors: - email: philip.stroemert@tib.eu github: StroemPhi name: ' Philip Strömert' orcid: 0000-0002-1595-3213 - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: 'A collection of ontologies relevant within the [NFDI4Chem project](https://www.nfdi4chem.de/) that is mostly based on the overview paper [Ontologies4Chem: the landscape of ontologies in chemistry](https://doi.org/10.1515/pac-2021-2007). NFDI4Chem deploys a [custom instance](https://terminology.nfdi4chem.de/ts/) of the Ontology Lookup Service (OLS), called NFDI4Chem Terminology Services (TS), that provides the ontologies in this list. This list contains ontologies that cover various domains of chemistry (e.g. ChEBI, CHMO, and RXNO), those that are dependencies of these chemistry specific ontologies (e.g. BFO, RO, IAO, and OBI) as well as those ontologies, which where indexed in the NFDI4Chem TS for interoperability research purposes (e.g. PROV-O, SOSA, and OBOE).' identifier: '0000014' keywords: - chemistry logo: https://nfdi4chem.de/wp-content/themes/wptheme/assets/img/logo.svg maintainers: - email: philip.stroemert@tib.eu github: StroemPhi name: ' Philip Strömert' orcid: 0000-0002-1595-3213 mappings: - identifier: nfdi4chem prefix: tib.collection name: NFDI4Chem Collection organizations: - name: NFDI4Chem ror: 05wwzbv21 wikidata: Q96678459 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://terminology.nfdi4chem.de/ts/ - https://doi.org/10.1515/pac-2021-2007 resources: - afo - prefix: bfo tags: - production - bto - comment: Used in YMDB, HMDB, PubChem, MassBank, KNApSAcK, UM-BBD, GMD, SMID-DB prefix: chebi - prefix: cheminf tags: - production - chemrof - chiro - prefix: chmo tags: - collaborative - production - prefix: dcat tags: - production - duo - edam - efo - enm - envo - fair - prefix: fix tags: - research - prefix: gainesville.core tags: - research - iao - mod - mop - ms - ncit - nmr - obi - oboe - oboe.standard - om - ontorxn - pato - proco - prefix: prov tags: - production - reproduceme - prefix: rex tags: - research - ro - prefix: rxno tags: - collaborative - sepio - sio - sosa - ssn - ssn.system - swo - time - uo - prefix: vibso tags: - collaborative - voc4cat - worldavatar.compchem - worldavatar.kin - worldavatar.os tags: - code: collaborative description: External, but curated by the consortium name: Collaborative - code: production description: Used in production within services of the consortium name: In Production - code: research description: not in any associated services of the consortium of the collection, but indexed to compare with the ones used, or to learn from, or to maybe build mappings name: Research '0000015': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: A collection of resources added during Biocuration 2025 in Kansas City, MO, USA. identifier: '0000015' name: Biocuration Conference 2025 Collection resources: - antifam - biomarkerkb.biomarker - biomarkerkb.canonical - blastrule - emi - endlessforms.collection - endlessforms.element - endlessforms.graphic - endlessforms.image - endlessforms.library - endlessforms.unit - gdo '0000016': contributors: - email: robert.j.allaway@gmail.com github: allaway name: Robert Allaway orcid: 0000-0003-3573-3565 description: A curated list by Sage Bionetworks of external resources that are automatically linked on Synapse.org and affiliated data portals identifier: '0000016' name: Synapse.org external links resources: - ado - agrkb - anzctr - arrayexpress - arxiv - atc - atcc - bacdive - bfo - bgee.gene - biocyc - biogrid - bioportal - bioproject - biorxiv - biosample - biostudies - bmrb.entry - brenda - brenda.ligand - brenda.ligandgroup - bto - cath - cbioportal - cdd - cellimage - cellxgene.collection - chebi - chembl - chembl.compound - chemspider - civic.aid - civic.did - civic.eid - civic.gid - civic.sid - civic.tid - civic.vid - clinicaltrials - clinvar.record - clinvar.variation - complexportal - cosmic.cell - cosmic.gene - cpt - ctd.chemical - ctri - cvx - dbgap - dbsnp - decipher - depmap - dhba - disprot - dmba - doi - doid - drks - drugbank - drugcentral - duo - ec - ecacc - edam - ega.dataset - ega.study - emdb - empiar - ena.embl - ensembl - ensembl.metazoa - ensembl.plant - euclinicaltrials - eupath - exac.variant - fairsharing - flybase - fma - funderregistry - gard - gbif - gdc - genecards.gene - geo - go - gramene.gene - gramene.growthstage - gramene.protein - gtdb - hba - hc.trial - hgnc - hl7.v2codesystem - hmdb - icd10 - icd9 - icdc - icf - idr - imgt.hla - inchi - inchikey - insdc - insdc.sra - intact - interpro - iso.3166 - isrctn - itis - jaxmice - kegg - kegg.compound - kegg.disease - kegg.drug - kegg.glycan - kegg.pathway - kegg.reaction - loinc - massive - mba - mesh - metabolights - metacyc.compound - mgi - mir - mirbase - mondo - ncbigene - ncbiprotein - ncbitaxon - ncit - ndc - ndfrt - nextprot - nihreporter.project - nord - omim - omop - orcid - orpha - orphanet.ordo - osf - panther.family - panther.pathway - panther.pthcmp - pba - pdb - pdb-ccd - pdb.ligand - pdc.study - peco - peptideatlas.dataset - pfam - pfam.clan - pharmgkb.disease - pharmgkb.drug - pharmgkb.gene - pharmgkb.pathways - pmc - pombase - pride.project - pubchem.compound - pubmed - px - radlex - reactome - rebec - refseq - rfam - rfc - rgd - rhea - rnacentral - ror - rrid - rrrc - rxnorm - scop - sgd - signor - snomedct - so - ssbd.dataset - ssbd.project - stitch - string - tao - tcdb - uberon - unii - uniparc - uniprot - uniprot.isoform - uniprot.proteome - uniref - wikidata - wikigenes - wikipathways - wormbase - xenbase - zenodo.record - zfin - zinc '0000017': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: Prefixes relevant for the [Data Literacy Alliance (DALIA)](https://dalia.education/en) project identifier: '0000017' name: DALIA Resources resources: - ans.educationlevel - bibframe - bibo - bmbf.glossary - ceds.element - citedcat - codata.rdmt - dai.thesauri - datacite - dbpedia.resource - dcterms - emmo - fabio - iana.mediatype - isced1997 - isced2011 - loc.fdd - m4i - marc21 - modalia - nfdi4dso - owl - prov - sage.socialsciencethesaurus - schema - sio - spdx - spdx.term - t4fs - unesco.thesaurus - wdrs - wikidata 0000018: contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 - email: m.voigt@hzdr.de github: eilmiv name: Martin Voigt orcid: 0000-0001-5556-838X description: 'The prefixes appearing in this collection correspond resources whose entities could appear as values for target groups, media types, educational levels, and other fields in OER data models. It can also include parts that are used to construct schemas for OERs It was originally curated as part of the publication [_Teaching RDM in a smart advanced inorganic lab course and its provision in the DALIA platform_ (arxiv:2509.18902)](https://arxiv.org/pdf/2509.18902).' identifier: 0000018 name: Resources for modeling Open Educational Resources references: - https://arxiv.org/pdf/2509.18902 resources: - adcad - ans.educationlevel - ccso - ceds.learning_resource_type - edam - gsso - iana.mediatype - isced1997 - isced2011 - isced2013 - kim.amb - kim.conditionsofaccess - kim.educationlevel - kim.esv - kim.hcrt - kim.hochschulfaechersystematik - kim.lp - kim.schularten - kim.schulfaecher - loc.fdd - lrmi - lrmi.alignmenttype - lrmi.educationalaudiencerole - lrmi.eduse - lrmi.interact - lrmi.resourcetype - modalia - oeh.educationlevel - oerschema - openeduhub.context - schema - t4fs - unesco.thesaurus - vivo 0000019: contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: Prefixes relevant for the digital humanities identifier: 0000019 name: Digital Humanities references: - https://det.social/@HxxxKxxx/115492424655875213 resources: - cidoc.crm - edm - getty.att - getty.cona - getty.gvp - getty.ia - getty.tgn - getty.ulan - iconclass '0000020': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: '[KonsortSWD (Strengthen, Widen, Deepen)](https://www.nfdi.de/consortia-konsortswd) is the German National Data Infrastructure (NFDI) consortium for social, educational, behavioral, and economic sciences. This collection reflects the prefixes collected by NFDI Section Metadata for ontologies and controlled vocabularies used by members of the consortium.' identifier: '0000020' logo: https://www.nfdi.de/wp-content/uploads/2025/01/KonsortSWD-NFDI4society-300.png maintainers: - email: noemi.betancort@suub.uni-bremen.de github: nbetancort name: Noemi Betancort Cabrera orcid: 0000-0002-0156-3556 name: KonsortSWD organizations: - name: KonsortSWD ror: 020tty630 wikidata: Q98380340 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 - name: GESIS - Leibniz-Institute for the Social Sciences ror: 018afyw53 wikidata: Q1485220 resources: - cessda - cessda.cdcpublishernames - cessda.cessdadatacataloguecollections - cessda.cessdapersistentidentifiertypes - cessda.countrynamesandcodes - cessda.topicclassification - ddi.aggregationmethod - ddi.analysisunit - ddi.characterset - ddi.commonalitytype - ddi.contributorrole - ddi.datasourcetype - ddi.datatype - ddi.datetype - ddi.generaldataformat - ddi.languageproficiency - ddi.lifecycleeventtype - ddi.modeofcollection - ddi.numerictype - ddi.responseunit - ddi.samplingprocedure - ddi.softwarepackage - ddi.summarystatistictype - ddi.timemethod - ddi.timezone - ddi.typeofaddress - ddi.typeofconceptgroup - ddi.typeoffrequency - ddi.typeofinstrument - ddi.typeofnote - ddi.typeoftelephone - ddi.typeoftranslationmethod - esco.isco - gesis.kategorienschemawahlstudien - gesis.rexconcepts - gesis.rexdatatype - gesis.rexgroups - gesis.thesoz - gesis.variables-relations - isced1997 - isced2011 - isced2013 '0000021': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: Prefixes for ontologies relevant for the NFDI4Energy identifier: '0000021' logo: https://www.nfdi.de/wp-content/uploads/2023/03/01_Logo_NFDI4Energy.png maintainers: - github: amanda-wein name: Amanda Wein orcid: 0009-0009-2960-3474 mappings: - identifier: nfdi4energy prefix: tib.collection name: NFDI4Energy Collection organizations: - name: NFDI4Energy ror: 0238fds33 wikidata: Q113499626 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FdQaz52 resources: - bonsai - brick - cim - digitalconstruction.energy - docbias - dogont - energymarketroles - meno - oeo - openadr - saref.ener - saref.grid - sargon - tib.re - udsaes.fmi - udsaes.sms - zbw.stw '0000022': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for engineering and the [NFDI4Ing Consortium](https://nfdi4ing.de). Ontologies are chronologically imported from the corresponding [TIB Terminology Service collection](https://service.tib.eu/terminology/collections/nfdi4ing). identifier: '0000022' logo: https://www.nfdi.de/wp-content/uploads/2025/03/NFDI4ING_Wort-Bildmarke_no-disclaimer_POS_RGB.png maintainers: - github: doigl name: Dorothea Iglezakis orcid: 0000-0002-8524-0569 - github: Zack-83 name: Giacomo Lanza orcid: 0000-0002-2239-3955 - github: SArndt-TIB name: Susanne Arndt orcid: 0000-0002-1019-9151 mappings: - identifier: nfdi4ing prefix: tib.collection name: NFDI4Ing Collection organizations: - gnd: '1227971389' name: NFDI4ING ror: 00enhv193 wikidata: Q98380344 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2F4kTQmd resources: - afo - atomistic - battinfo - bfo - bonsai - bot - brick - building - cc - commoncoreontology - condo - cora - credit - dcterms - dfg.fo - digitalconstruction.energy - digitalconstruction.lifecycle - digitalconstruction.occupancy - dogont - dpvocab - duo - edam - emmo - fabio - fair - fidbaudigital.subject - fiesta.iot - findex.bau - findex.raum - ftonto - geosparql - gist - iao - idsa - iirds.core - iirds.mch - iirds.sft - infosecsos - iofcore - kdsf.ffk - kit.mtxx - kpio - listdb.onto - m4i - mathmoddb - mobivoc - modsci - mwo - oeo - okn.sd - om - panet - physh - pmdco - polymat - pror - prov - rosetta - saref - saref.auto - saref.building - saref.ehaw - saref.ener - saref.environment - saref.industry - saref.lift - saref.system - saref.water - saref.wearable - sepio - sh - si - sio - sosa - ssn - ssn.system - sweet - swo - t4fs - tib.bk - tib.bo - tib.dot - tib.dr - tib.gpo - tib.hpont - tib.ifc - tib.io - tib.ioc - tib.lis - tib.mat - tib.mdo - tib.mdv - tib.mt - tib.n0 - tib.ofm - tib.sto - tib.tso - tribain - uat - uo - vssocore - woc.ontology - wot.td '0000023': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for the DataPLANT Consortium seeded from corresponding the [TIB OLS collection](https://service.tib.eu/terminology/collections/dataplant). See also a [recent review](https://doi.org/10.3389/fpls.2023.1279694) on ontologies for plant research data. identifier: '0000023' logo: https://www.nfdi.de/wp-content/uploads/2021/05/DataPLANT_logo_square_bg_transparent.svg maintainers: - email: k.dumschott@fz-juelich.de github: kdumschott name: Kathryn Dumschott orcid: 0000-0002-9905-4011 - email: a.kranz@fz-juelich.de github: AngelaKranz name: Angela Kranz orcid: 0000-0002-8000-0400 - email: h.doerpholz@fz-juelich.de github: Hannah-Doerpholz name: Hannah Dörpholz orcid: 0000-0002-0476-9699 mappings: - identifier: dataplant prefix: tib.collection name: DataPLANT Collection organizations: - name: DataPLANT ror: 01v7r4v08 wikidata: Q98380336 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - agro - bao - bco - bfo - bioportal.bof - bioportal.geospecies - bto - chebi - chmo - cob - dpbo - edam - efo - envo - eo - flopo - gaz - go - mmo - mod - ms - msio - ncbitaxon - ncit - obi - omp - pato - pco - peco - po - ppeo - ppo - pso - ro - stato - swo - to - uberon - uo '0000024': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for the FAIRmat Consortium seeded from corresponding the [TIB OLS collection](https://service.tib.eu/terminology/collections/fairmat). identifier: '0000024' logo: https://www.nfdi.de/wp-content/uploads/2025/02/aktuelles_logo_02.25.png maintainers: - email: markus.kuehbach@physik.hu-berlin.de github: mkuehbach name: Markus Kühbach orcid: 0000-0002-7117-5196 mappings: - identifier: fairmat prefix: tib.collection name: FAIRmat Collection organizations: - name: FAIRmat ror: 034pbpe12 wikidata: Q108542373 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FboyT2y - https://discord.com/channels/1201445470485106719/1498656792937500785 resources: - bfo - nexus - tfsco - voc4cat '0000025': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 - github: epoz name: Etienne Posthumus orcid: 0000-0002-0006-7542 description: 'A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Culture Consortium seeded from corresponding the [TIB OLS collection](https://service.tib.eu/terminology/collections/nfdi4culture). ' identifier: '0000025' logo: https://www.nfdi.de/wp-content/uploads/2021/05/NFDI4C_Logo.png maintainers: - email: tabea.tietz@fiz-karlsruhe.de github: tabeatietz name: Tabea Tietz orcid: 0000-0002-1648-1684 mappings: - identifier: nfdi4culture prefix: tib.collection name: NFDI4Culture Collection organizations: - name: NFDI4Culture ror: 001jhv750 wikidata: Q98276929 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - bfo - bot - cidoc.crm - dbo - dcat - dcterms - doap - fabio - foaf - frapo - geonames - gesah - gnd - iao - iconclass - lido - modsci - nfdi4culture.cto - obi - ohdab - okn.sd - org - premis - schema - skos - swo - vcard - viaf - vivo - wikidata '0000026': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the DAPHNE4NFDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying DAPHNE4NFDI Consortium members appropriate for maintaining this collection. identifier: '0000026' logo: https://www.nfdi.de/wp-content/uploads/2022/05/DAPHNE4NFDI_logo.png maintainers: - email: heike.goerzig@helmholtz-berlin.de github: hgoerzig name: Heike Görzig orcid: 0000-0001-9121-8643 - email: rolf.krahl@helmholtz-berlin.de github: RKrahl name: Rolf Krahl orcid: 0000-0002-1266-3819 - github: paulmillar name: Paul Millar orcid: 0000-0002-3957-1279 name: DAPHNE4NFDI Collection organizations: - name: DAPHNE4NFDI ror: 03xrvbe74 wikidata: Q108542327 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FZvh5e3 resources: - nexus - panet '0000027': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the MaRDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying MaRDI Consortium members appropriate for maintaining this collection. identifier: '0000027' logo: https://www.nfdi.de/wp-content/uploads/2021/12/MaRDI_Logo_rgba.png maintainers: - email: bjoern.schembera@mathematik.uni-stuttgart.de github: bjschembera name: ' Björn Schembera' orcid: 0000-0003-2860-6621 mappings: - identifier: mardi prefix: tib.collection name: MaRDI Collection organizations: - name: MaRDI ror: 04ncnzm65 wikidata: Q108327788 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - amv - codemeta - factgrid - mathalgodb - mathmoddb - msc - physh - qudt - tib.bk - wikidata 0000028: contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for the BERD@NFDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). identifier: 0000028 logo: https://www.nfdi.de/wp-content/uploads/2021/12/Logo_BERD-NFDI_transparent_gruen-schwarz_400px.png maintainers: - email: f.limani@zbw.eu github: fidanLimani name: Fidan Limani orcid: 0000-0002-5835-2784 - github: draatiflatif name: Atif Latif orcid: 0000-0003-3085-3031 name: BERD@NFDI Collection organizations: - name: BERD@NFDI ror: 02cxb1m07 wikidata: Q108542181 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FjxNRaY resources: - dfg.fo - jel - zbw.stw 0000029: contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4DataScience Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). identifier: 0000029 logo: https://www.nfdi.de/wp-content/uploads/2022/06/NFDI4DS_Logo.png maintainers: - email: Benjamin.Zapilko@gesis.org github: BenZapilko name: Benjamin Zapilko orcid: 0000-0001-9495-040X name: NFDI4DataScience Collection organizations: - name: NFDI4DataScience ror: 00bb4nn95 wikidata: Q108542422 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FNTuvAb resources: - nfdi.core - nfdi4dso - schema '0000030': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Earth Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). identifier: '0000030' logo: https://www.nfdi.de/wp-content/uploads/2021/12/NFDI4Earth_logo.png maintainers: - github: aurioldegbelo name: Auriol Degbelo orcid: 0000-0001-5087-8776 name: NFDI4Earth Collection organizations: - name: NFDI4Earth ror: 01f5dqg10 wikidata: Q108542504 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FXJ89uS resources: - bco - chebi - dcat - dcterms - envo - flopo - foaf - gaz - geonames - geosparql - legacy.ao - n4e - ncbitaxon - oboe - pato - po - prov - schema - skos - sosa - ssn - sweet - t4fs - tdwg.abcd - to - vcard - wlmo '0000031': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI-MatWerk Consortium created in cooperation with the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). identifier: '0000031' logo: https://www.nfdi.de/wp-content/uploads/2022/03/Logo_NFDI-MatWerk-1000px.png maintainers: - email: norouzi.iut@gmail.com github: ebrahimnorouzi name: Ebrahim Nourouzi orcid: 0000-0002-2691-6995 - email: Heike.Fliegl@fiz-karlsruhe.de github: heikef name: Heike Fliegl orcid: 0000-0002-7541-115X name: NFDI-MatWerk Collection organizations: - name: NFDI-MatWerk ror: 01d2qgg03 wikidata: Q108542607 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - bfo - chebi - mwo - nfdi.core - pmdco - comment: used by JL MDMC, NEP, EOSC-Pillar prefix: prima '0000032': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the PUNCH4NFDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying PUNCH4NFDI Consortium members appropriate for maintaining this collection. PUNCH4NFDI is notable in that its sub-disciplines (e.g., astronomy, high energy physics, nuclear physics, etc.) have a large variety in data and metadata needs. identifier: '0000032' logo: https://www.nfdi.de/wp-content/uploads/2021/12/PUNCH4NFDI-Logo_RGB.png maintainers: - github: harenk name: Harry Enke orcid: 0000-0002-2366-8316 name: PUNCH4NFDI Collection organizations: - name: PUNCH4NFDI ror: 03f6sdf65 wikidata: Q108542637 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FLMmoLA resources: - bioregistry '0000033': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the FAIRagro Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying FAIRagro Consortium members appropriate for maintaining this collection. identifier: '0000033' logo: https://www.nfdi.de/wp-content/uploads/2023/08/Fairagro_Logo_mittelachsig_Verklauf_cmyk.png maintainers: - email: schneiderg@zbmed.de github: ga-schneider name: Gabriel Schneider orcid: 0000-0001-6573-3115 name: FAIRagro Collection organizations: - name: FAIRagro ror: 00r0qs524 wikidata: Q113486316 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FP8mt5a resources: - bco - chebi - dcat - dcterms - envo - flopo - foaf - gaz - geonames - legacy.ao - ncbitaxon - oboe - pato - po - prov - schema - skos - sosa - ssn - sweet - tdwg.abcd - to - wlmo '0000034': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE identifier: '0000034' logo: https://www.nfdi.de/wp-content/uploads/2023/10/1_NDFI_Logo-4c.png maintainers: - email: damien@gerbi-gmb.de github: gouttegd name: Damien Goutte-Gattat orcid: 0000-0002-6095-8718 name: NFDI4BIOIMAGE Collection organizations: - name: NFDI4BIOIMAGE ror: 01vnkaz16 wikidata: Q113500855 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - bioregistry - chebi - cl - clo - cmpo - dicom - doid - edam - efo - fbbi - go - mesh - mondo - mp - mpath - ncbitaxon - obi - radlex - snomedct - swo - uberon - uo '0000035': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A collection of ontologies, controlled vocabularies, and schemas relevant for the NFDIxCS Consortium. identifier: '0000035' logo: https://nfdixcs.org/fileadmin/PR/NFDIxCS/NFDIxCS_Logo2024_deepblue_crop.png maintainers: - email: huch@in.tum.de name: Fabian Huch orcid: 0000-0002-9418-1580 mappings: - identifier: nfdixcs prefix: tib.collection name: NFDIxCS Collection organizations: - name: NFDIxCS ror: 0033j3009 wikidata: Q113501071 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FWgaGQB resources: - amv - bfo - cito - cso - datacite - dblp.schema - dcterms - doap - fabio - gufo - hpc - iao - infosecsos - iotlite - mathmoddb - schema - seon - swo '0000036': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: 'A collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Objects Consortium imported from the consortium''s official BARTOC record [https://bartoc.org/en/node/18961](https://bartoc.org/en/node/18961). Note: this collection is a subset of the BARTOC collection until all ontologies and controlled vocabularies in the BARTOC collection are also curated in the Semantic Farm.' identifier: '0000036' logo: https://www.nfdi.de/wp-content/uploads/2023/12/nfdi4objects_logo_digital_kurztitel.png maintainers: - email: voss@gbv.de github: nichtich name: Jakob Voß orcid: 0000-0002-7613-4123 - email: anja.gerber@klassik-stiftung.de github: anja-gerber name: Anja Gerber orcid: 0000-0003-2576-1511 - email: florian.thiery@leiza.de github: florianthiery name: Florian Thiery orcid: 0000-0002-3246-3531 - email: kristina.fischer@leiza.de github: KristinaYFischer name: Kristina Fischer orcid: 0009-0005-3991-1025 mappings: - identifier: '18961' prefix: bartoc name: NFDI4Objects Collection organizations: - name: NFDI4Objects ror: 01xptp363 wikidata: Q98229157 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - amh.material - bibo - bioregistry - cidoc.crm - dai.thesauri - datacite.contributor - datacite.date - datacite.description - datacite.identifier - datacite.name - datacite.relation - datacite.resource - fish.aoe - fish.as - fish.bm - fish.event - fish.mc - fish.mt - geonames - geosparql - getty.att - getty.tgn - getty.ulan - gnd - hessische.systematik - iconclass - kenom.material - lado - lido.actor - lido.event - lido.identifier - lido.recordmetadatadate - lido.recordtype - lido.repositoryset - lido.resourcerepresentation - lido.termmaterialstech - lv - oeai.ctp - oeai.material - orcid - ror - skos - time - unesco.thesaurus - viaf - whg - wikidata '0000037': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Memory Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Memory Consortium members appropriate for maintaining this collection. identifier: '0000037' logo: https://www.nfdi.de/wp-content/uploads/2023/08/Logo_for_memory_RGB.png maintainers: - email: tabea.tietz@fiz-karlsruhe.de github: tabeatietz name: Tabea Tietz orcid: 0000-0002-1648-1684 name: NFDI4Memory Collection organizations: - name: NFDI4Memory ror: 0310v3480 wikidata: Q98231721 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 resources: - cidoc.crm - edm - factgrid - geonames - getty.att - getty.cona - getty.ia - getty.tgn - getty.ulan - gnd - gov.object - hisco - iconclass - kldb - lido - nfdi.core - nfdi4culture.cto - ohdab - ontome - tadirah - wikidata 0000038: contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the Text+ Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying Text+ Consortium members appropriate for maintaining this collection. identifier: 0000038 logo: https://www.nfdi.de/wp-content/uploads/2023/12/textplus_logo_RGB.png maintainers: - github: ttrippel name: Thorsten Trippel orcid: 0000-0002-7211-7393 name: Text+ Collection organizations: - name: Text+ ror: 04dy2xw62 wikidata: Q98271443 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FaKbtMN resources: - bibframe - cessda.topicclassification - cidoc.crm - geonames - getty.att - getty.cona - getty.ia - getty.tgn - getty.ulan - gnd - iconclass - lido - ontolex - ontome - tadirah 0000039: contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the GHGA Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying GHGA Consortium members appropriate for maintaining this collection. identifier: 0000039 logo: https://www.nfdi.de/wp-content/uploads/2022/10/Logo-GHGA.png maintainers: - github: mauerk name: Karoline Mauer orcid: 0000-0002-9454-7941 name: GHGA Collection organizations: - name: GHGA ror: 05nfk7108 wikidata: Q98380337 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FCHzcLh resources: - biolink - cob - duo - edam - efo - genepio - ghga - gsso - hancestro - linkml - ncit - sio '0000040': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Biodiversity Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Biodiversity Consortium members appropriate for maintaining this collection. identifier: '0000040' logo: https://www.nfdi.de/wp-content/uploads/2023/03/NFDI_4_Biodiversity___Logo_Positiv_Kopie.png maintainers: - github: naouelkaram name: Naouel Karam orcid: 0000-0002-6762-6417 - email: schaefermeier@infai.org github: RalphBln name: Ralph Schäfermeier orcid: 0000-0002-4349-6726 name: NFDI4Biodiversity Collection organizations: - name: NFDI4Biodiversity ror: 03fqpzb44 wikidata: Q98380341 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FEWutLP resources: - abcd - ahol - aism - apto - atol - bco - bfo - biodivthes - bohlmann - bspo - caro - chebi - cl - cob - codata.rdmt - colao - dcat - dfg.fo - eco - edam - envo - envthes - eol - flopo - geonames - gfbio.biobank - gfbio.biol - gfbio.botany - gfbio.ets - gfbio.iho - gfbio.kingdom - gfbio.top - iadopt - inbio - iso.3166 - itis - lepao - lpt - ncbitaxon - nfdi.core - oba - oboe - odm2.methodtype - odm2.specimentype - oim - om - pato - pco - po - prov - qudt - ro - schema - sosa - sumso - sweet - swo - taxonconcept - taxrank - tib.bk - to - uberon - unesco.thesaurus - vbo - vt '0000041': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Health Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Health Consortium members appropriate for maintaining this collection. identifier: '0000041' logo: https://www.nfdi.de/wp-content/uploads/2021/05/nfdi_4_health_Logo.png maintainers: - email: matthias.loebe@imise.uni-leipzig.de github: beanformer name: Matthias Löbe orcid: 0000-0002-2344-0426 name: NFDI4Health Collection organizations: - name: NFDI4Health ror: 0305k8y39 wikidata: Q98380343 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FDFD2Ba resources: - agrovoc - ahol - atc - atol - bao - chebi - clo - cmpo - datacite - dbsnp - dcterms - doid - efo - foodex2 - foodon - go - hgnc - hp - iao - icd10 - icd11 - icdo - loinc - meddra - mesh - mgi - mirbase - ncbigene - ncbitaxon - ncit - orpha - rgd - snomedct - spdx - uberon - ucum - umls - uniprot '0000042': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Microbiota Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Microbiota Consortium members appropriate for maintaining this collection. identifier: '0000042' logo: https://www.nfdi.de/wp-content/uploads/2021/12/nfdi4microbiota_Logo_.png maintainers: - github: anandhi-iyappan name: Anandhi Iyappan orcid: 0000-0002-5571-4962 - github: nacnoriko name: Noriko Cassman orcid: 0000-0003-1655-0931 - github: magelm name: Maja Magel orcid: 0009-0004-2517-0791 name: NFDI4Microbiota Collection organizations: - name: NFDI4Microbiota ror: 03a4sp974 wikidata: Q99534506 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2F32bEDW resources: - bioregistry '0000043': contributors: - name: NFDI Section Metadata WG Ontology Harmonization and Mapping wikidata: Q139055838 description: A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Immuno Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Immuno Consortium members appropriate for maintaining this collection. identifier: '0000043' logo: https://www.nfdi.de/wp-content/uploads/2025/12/logo25_plus-text-hori_light_transparent.png maintainers: - github: ustervbo name: Ulrik Stervbo orcid: 0000-0002-2831-8868 - github: FederalGobbo name: Sebastian Böhm orcid: 0009-0006-4599-6309 name: NFDI4Immuno Collection organizations: - name: NFDI4Immuno ror: 01k8bwd50 wikidata: Q113543313 - name: NFDI ror: 05qj6w324 wikidata: Q61658497 references: - https://go.rocket.chat/invite?host=all-chat.nfdi.de&path=invite%2FBzRWeP resources: - bioregistry '0000044': contributors: - email: cthoyt@gmail.com github: cthoyt name: Charles Tapley Hoyt orcid: 0000-0003-4423-4370 description: '[PID4NFDI](https://pid.services.base4nfdi.de) is a Base4NFDI service that provides documentation about a small number of well-known identifier schemes (e.g., DOI) and services for registering identifiers within them (e.g., DataCite). This collection reflects their [PID Providers](https://pid.services.base4nfdi.de/get-pid/providers/) page. This comes with the following caveats: - Crossref and DataCite are services that mint DOIs. Since DOIs are the identifier space, only `doi` appears in this collection. - ePIC is a service that mints Handle system. Since Handles are the identifier space, only `hdl` appears in this collection - PIDINST is an abstraction on top of DataCite / ePIC, which is covered by `doi` and `hdl` as described above' identifier: '0000044' name: PID4NFDI Providers resources: - ark - doi - factgrid - gnd - hdl - igsn - orcid - pida - raid - ror - swh - wikidata '0000045': contributors: - github: anganske name: Anette Ganske orcid: 0000-0003-1043-4964 - github: kraftalin name: Angelina Kraft orcid: 0000-0002-6454-335X - email: markus.stocker@tib.eu github: markusstocker name: Markus Stocker orcid: 0000-0001-5492-3212 description: 'The Earth System Sciences (ESS) collection contains terminologies (ontologies and vocabularies) for describing Earth System Sciences (e.g., `bodc.cf`, `envo`), data and structures (e.g., `prov-o`), physical units (e.g., `time`), as well as measurements and observations (e.g., `tib.meth`). It was developed by the [BITS project](https://projects.tib.eu/bits/home) (BluePrints for the Integration of Terminology Services in Earth System Sciences), which was funded by the Deutsche Forschungsgemeinschaft ([project number 508107981](https://gepris.dfg.de/gepris/projekt/508107981), July 2023 – June 2026). The ESS collection''s terminologies were firstly chosen by the three project partners [TIB – Leibniz Information Centre for Science and Technology](https://www.tib.eu/en/), the [German Climate Computing Center (DKRZ)](https://www.dkrz.de/en/dkrz-partner-for-climate-research?set_language=en), and the [Senckenberg - Leibniz Institution for Biodiversity and Earth System Research (SGN)](https://www.senckenberg.de/en/about-us/senckenberg-society-nature-research/) in close cooperation with [NFDI4Earth](https://www.nfdi4earth.de/) and the [Helmholtz Metadata Collaboration](https://helmholtz-metadaten.de/).' identifier: '0000045' logo: https://private-user-images.githubusercontent.com/58422600/595255823-95fb77d4-c775-4d1f-8d1d-aacbda324bb7.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.9V4j3O3ppguT7s4TmyLNAJQwULkh2oGzIrRcP7N0SYg mappings: - identifier: ess prefix: tib.collection name: Earth System Sciences Collection resources: - bco - bodc.cf - bodc.sdn - chebi - dcat - dcterms - dfg.fo - dpvocab - dsw - duo - ecso - edam - efo - envo - envthes - flopo - gemet.concept - geosparql - gfbio.ets - gndo - n4e - oboe - om - pato - po - prov - sbo - schema - sio - sosa - ssn - stato - sweet - t4fs - tdwg.abcd - tib.bk - tib.cgo - tib.meth - time - to - uat - uo - wlmo