metaprefix name homepage description download example contact.name contact.email contact.github provider_uri_format resolver_uri_format resolver_type aberowl AberOWL http://aber-owl.net AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets. http://aber-owl.net/api/ontology/?format=json CHEBI Ali Syed ali.syed@kaust.edu.sa aliraza995 http://aber-owl.net/ontology/$1 http://aber-owl.net/ontology/$1/#/Browse/ lookup agroportal AgroPortal http://agroportal.lirmm.fr A vocabulary and ontology repository for agronomy and related domains. ENVO Clement Jonquet clement.jonquet@inrae.fr jonquet http://agroportal.lirmm.fr/ontologies/$1 lookup bartoc Basic Register of Thesauri, Ontologies & Classifications https://bartoc.org/ The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO). https://bartoc.org/data/dumps/latest.ndjson 181 Andreas Ledl andreas.ledl1@fhnw.ch nichtich https://bartoc.org/en/node/$1 biocontext BioContext https://github.com/prefixcommons/biocontext BioContext contains modular JSON-LD contexts for bioinformatics data. https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld CHEBI Chris Mungall cjmungall@lbl.gov cmungall https://bioregistry.io/metaregistry/biocontext/$1 biolink Biolink Model Registry https://github.com/biolink/biolink-model A modeling paradigm-specific registry of prefixes and their URL expansions https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml doi Deepak Unni deepak.unni3@lbl.gov deepakunni3 bioportal BioPortal Prefixes https://bioportal.bioontology.org/ The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry CHEBI John Graybeal jgraybeal@stanford.edu graybeal https://bioportal.bioontology.org/ontologies/$1 lookup bioregistry Bioregistry https://bioregistry.io The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database. https://bioregistry.io/api/registry/ chebi Charles Tapley Hoyt cthoyt@gmail.com cthoyt https://bioregistry.io/registry/$1 https://bioregistry.io/$1:$2 resolver cellosaurus Cellosaurus Registry https://web.expasy.org/cellosaurus/ The set of prefixes used in the Cellosaurus resource 4DN Amos Bairoch Amos.Bairoch@sib.swiss AmosBairoch cheminf Chemical Information Ontology https://github.com/semanticchemistry/semanticchemistry Contains entries for various database identifiers 000140 Egon Willighagen egon.willighagen@gmail.com egonw https://semanticscience.org/resource/CHEMINF_$1 lookup cropoct Crop Ontology Curation Tool https://www.cropontology.org The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms https://cropontology.org/metadata CO_325 Elizabeth Arnaud e.arnaud@cgiar.org elizabetharnaud https://cropontology.org/ontology/$1 https://cropontology.org/term/$1:$2 lookup ecoportal EcoPortal http://ecoportal.lifewatch.eu The LifeWatch ERIC repository of semantic resources for the ecological domain. AGROVOC Xeni Kechagioglou xeni.kechagioglou@lifewatch.eu xeniacs http://ecoportal.lifewatch.eu/ontologies/$1 lookup edam EDAM Ontology http://edamontology.org EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use. http://edamontology.org/EDAM.owl 1004 Matúš Kalaš matus.kalas@uib.no matuskalas http://edamontology.org/data_$1 fairsharing FAIRSharing https://fairsharing.org/ A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies. FAIRsharing.62qk8w Allyson Lister allyson.lister@oerc.ox.ac.uk allysonlister https://fairsharing.org/$1 go Gene Ontology Registry http://geneontology.org/ A database-specific registry supporting curation in the Gene Ontology https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml CHEBI Chris Mungall cjmungall@lbl.gov cmungall hl7 HL7 External Code Systems http://www.oid-info.com/get/2.16.840.1.113883.6 HL7 External Code Systems are stored within the greater OID system 2.16.840.1.113883.6.88 W. Ted Klein ted@tklein.com http://oid-info.com/get/$1 miriam Identifiers.org https://identifiers.org The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession). https://registry.api.identifiers.org/resolutionApi/getResolverDataset chebi Henning Hermjakob hhe@ebi.ac.uk hHermjakob https://registry.identifiers.org/registry/$1 https://identifiers.org/$1:$2 resolver n2t Name-to-Thing https://n2t.net An ARK resolver as well as resolver built with common prefixes as in Identifiers.org https://n2t.net/e/n2t_full_prefixes.yaml chebi John Kunze jak@ucop.edu jkunze https://n2t.net/$1: https://n2t.net/$1:$2 resolver ncbi National Center for Biotechnology Information Registry https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/ A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources ECOCYC GenBank Support gb-admin@ncbi.nlm.nih.gov obofoundry OBO Foundry http://www.obofoundry.org/ The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. http://www.obofoundry.org/registry/ontologies.yml CHEBI Chris Mungall cjmungall@lbl.gov cmungall https://www.obofoundry.org/ontology/$1 http://purl.obolibrary.org/obo/$1_$2 resolver ols Ontology Lookup Service https://www.ebi.ac.uk/ols4 The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. chebi Henriette Harmse henriette007@ebi.ac.uk henrietteharmse https://www.ebi.ac.uk/ols4/ontologies/$1 lookup ontobee OntoBee http://www.ontobee.org/ Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. AGRO Yongqun Oliver He yongqunh@med.umich.edu yongqunh http://www.ontobee.org/ontology/$1 http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2 lookup prefixcc Prefix.cc https://prefix.cc/ A web-developer centric archive of prefixes and URI prefixes https://prefix.cc/context.jsonld foaf Richard Cyganiak richard@cyganiak.de cygri https://prefix.cc/$1 prefixcommons Prefix Commons https://registry.bio2kg.org A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org. http://tinyurl.com/lsregistry doi Michel Dumontier michel.dumontier@gmail.com micheldumontier https://registry.bio2kg.org/resource/$1 re3data Registry of Research Data Repositories https://www.re3data.org Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines. r3d100014165 Michael Witt mwitt@purdue.edu mwittin https://www.re3data.org/repository/$1 rrid Research Resource Identifiers https://rrid.site The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools https://docs.google.com/spreadsheets/d/1BEPZXZsENhK7592AR83xUwbPbR2J-GVQ/edit?usp=sharing&ouid=107737386203376389514&rtpof=true&sd=true AB Anita Bandrowski bandrow@gmail.com bandrow https://scicrunch.org/resolver/RRID:$1_$2 lookup uniprot UniProt Cross-ref database https://www.uniprot.org/database/ The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources. https://www.uniprot.org/database/?format=rdf DB-0174 Alex Bateman agb@ebi.ac.uk bateman-research https://www.uniprot.org/database/$1 wikidata Wikidata Property https://www.wikidata.org An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries. P683 WikiData Support info@wikidata.org http://www.wikidata.org/entity/$1