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(from https://togoid.dbcls.jp/)" }, "http://purl.org/dc/terms/hasPart": [ { "@id": "https://togoid.dbcls.jp/#Pmc" }, { "@id": "https://togoid.dbcls.jp/#Mondo" }, { "@id": "https://togoid.dbcls.jp/#Pfam" }, { "@id": "https://togoid.dbcls.jp/#Mirbase" }, { "@id": "https://togoid.dbcls.jp/#Ncbigene" }, { "@id": "https://togoid.dbcls.jp/#Taxonomy" }, { "@id": "https://togoid.dbcls.jp/#Cog" }, { "@id": "https://togoid.dbcls.jp/#Lrg" }, { "@id": "https://togoid.dbcls.jp/#Pathbank" }, { "@id": "https://togoid.dbcls.jp/#PubchemCompound" }, { "@id": "https://togoid.dbcls.jp/#Prosite" }, { "@id": "https://togoid.dbcls.jp/#Hgnc" }, { "@id": "https://togoid.dbcls.jp/#Atc" }, { "@id": "https://togoid.dbcls.jp/#Lipidmaps" }, { "@id": "https://togoid.dbcls.jp/#ReactomePathway" }, { "@id": "https://togoid.dbcls.jp/#Ec" }, { "@id": "https://togoid.dbcls.jp/#OmaProtein" }, { "@id": "https://togoid.dbcls.jp/#Cellosaurus" }, { "@id": "https://togoid.dbcls.jp/#Uniprot" }, { "@id": "https://togoid.dbcls.jp/#PdbCcd" }, { "@id": "https://togoid.dbcls.jp/#Sgd" }, { "@id": "https://togoid.dbcls.jp/#Doid" }, { "@id": "https://togoid.dbcls.jp/#Clinvar" }, { "@id": "https://togoid.dbcls.jp/#Rhea" }, { "@id": "https://togoid.dbcls.jp/#Uberon" }, { "@id": "https://togoid.dbcls.jp/#Glytoucan" }, { "@id": "https://togoid.dbcls.jp/#Biosample" }, { "@id": "https://togoid.dbcls.jp/#InchiKey" }, { "@id": "https://togoid.dbcls.jp/#PubchemSubstance" }, { "@id": "https://togoid.dbcls.jp/#Medgen" }, { "@id": "https://togoid.dbcls.jp/#Intact" }, { "@id": "https://togoid.dbcls.jp/#HgncSymbol" }, { "@id": "https://togoid.dbcls.jp/#AffyProbeset" }, { "@id": "https://togoid.dbcls.jp/#Dbsnp" }, { "@id": "https://togoid.dbcls.jp/#Vgnc" }, { "@id": "https://togoid.dbcls.jp/#Smart" }, { "@id": "https://togoid.dbcls.jp/#ChemblTarget" }, { "@id": "https://togoid.dbcls.jp/#Pdb" }, { "@id": "https://togoid.dbcls.jp/#IupharLigand" }, { "@id": "https://togoid.dbcls.jp/#ChemblCompound" }, { "@id": "https://togoid.dbcls.jp/#Homologene" }, { "@id": "https://togoid.dbcls.jp/#UniprotProteome" }, { "@id": "https://togoid.dbcls.jp/#Interpro" }, { "@id": "https://togoid.dbcls.jp/#Chebi" }, { "@id": "https://togoid.dbcls.jp/#Mp" }, { "@id": "https://togoid.dbcls.jp/#Ccds" }, { "@id": "https://togoid.dbcls.jp/#Go" }, { "@id": "https://togoid.dbcls.jp/#Mesh" }, { "@id": "https://togoid.dbcls.jp/#Pubmed" }, { "@id": "https://togoid.dbcls.jp/#Hmdb" }, { "@id": "https://togoid.dbcls.jp/#Swisslipids" }, { "@id": "https://togoid.dbcls.jp/#Rgd" }, { "@id": "https://togoid.dbcls.jp/#Bioproject" }, { "@id": "https://togoid.dbcls.jp/#Drugbank" }, { "@id": "https://togoid.dbcls.jp/#Nando" }, { "@id": "https://togoid.dbcls.jp/#Wikipathways" }, { "@id": "https://togoid.dbcls.jp/#Meddra" }, { "@id": "https://togoid.dbcls.jp/#Togovar" }, { "@id": "https://togoid.dbcls.jp/#Insdc" }, { "@id": "https://togoid.dbcls.jp/#UniprotMnemonic" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "TogoID" }, "http://xmlns.com/foaf/0.1/homepage": { "@value": "https://togoid.dbcls.jp/" }, "https://bioregistry.io/schema/#0000005": { "@value": "AffyProbeset" }, "https://bioregistry.io/schema/#0000006": { "@value": "https://togoid.dbcls.jp/#$1" }, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-2391-0384" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc01071", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "http://www.ontobee.org/ontology/ORNASEQ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "http://www.wikidata.org/entity/Q4651693", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "http://www.ontobee.org/ontology/DRON", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://fairsharing.org/FAIRsharing.zx1td8", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://www.wikidata.org/entity/P591", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "http://www.wikidata.org/entity/Q7201529", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://bioregistry.io/registry/vs", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "This vocabulary was created in the FOAF project, based on experience with FOAF, Dublin Core and other early RDF vocabularies. Deployment experience shows that changing namespace URIs is expensive and unrewarding, so this vocabulary provides terms to support in-place evolution of structured data vocabularies. By indicating status at the level of terms rather than vocabularies, dictionary-style, fine grained improvements become easier. Different organizations and parties can agree or disagree on the status of a vocabulary term; however the status published alongside the term may deserve special attention. Future work could include patterns for citing announcements and decisions, or using SKOS to decentralise the extension of the basic status levels. (from artifact)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SemWeb Vocab Status ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/vs" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/vs" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "semantic web" }, { "@value": "metadata" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.w3.org/2003/06/sw-vocab-status/ns" }, "https://bioregistry.io/schema/#0000005": "term_status", "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2003/06/sw-vocab-status/ns#$1", "https://bioregistry.io/schema/#0000010": { "@id": "https://www.w3.org/2003/06/sw-vocab-status/ns" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2003/06/sw-vocab-status/ns#", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.w3.org/2003/06/sw-vocab-status/ns#term_status" }, "https://bioregistry.io/schema/#0000029": { "@value": "vs" } }, { "@id": "https://bioregistry.io/registry/depmap", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "DepMap Cell Lines" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "cancer cell line" }, { "@value": "cell" }, { "@value": "cell line" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://depmap.org/portal" }, "https://bioregistry.io/schema/#0000005": "ACH-000001", "https://bioregistry.io/schema/#0000006": "https://depmap.org/portal/cell_line/$1", "https://bioregistry.io/schema/#0000008": "^ACH-\\d+$", "https://bioregistry.io/schema/#0000010": { "@id": "https://w3id.org/biopragmatics/resources/depmap/depmap.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-2857-4685" }, "https://bioregistry.io/schema/#0000024": "https://depmap.org/portal/cell_line/", "https://bioregistry.io/schema/#0000027": { "@id": "https://depmap.org/portal/cell_line/ACH-000001" }, "https://bioregistry.io/schema/#0000029": { "@value": "depmap" } }, { "@id": "https://bioregistry.io/registry/endlessforms.collection", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Collections of images, based on topics, such as the human skull collection", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "EndlessForms Studio Image Collections" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://images.endlessforms.info/" }, "https://bioregistry.io/schema/#0000005": "2", "https://bioregistry.io/schema/#0000006": "https://images.endlessforms.info/collection/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-9979-176X" }, "https://bioregistry.io/schema/#0000024": "https://images.endlessforms.info/collection/", "https://bioregistry.io/schema/#0000027": { "@id": "https://images.endlessforms.info/collection/2" }, "https://bioregistry.io/schema/#0000029": { "@value": "endlessforms.collection" } }, { "@id": "https://bioregistry.io/registry/sweet.repdsv", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Validation", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Representation Data Service Validation" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "representation data service validation" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/reprDataServiceValidation/" }, "https://bioregistry.io/schema/#0000005": "Acceptance", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/reprDataServiceValidation/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "sorepdsv" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/reprDataServiceValidation/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/reprDataServiceValidation/Acceptance" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.repdsv" } }, { "@id": "https://bartoc.org/en/node/20474", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { "@id": "https://bioportal.bioontology.org/ontologies/OM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://registry.identifiers.org/registry/ccdc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/funcbase.fly", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "FuncBase Fly" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.identifiers.org/registry/funcbase.fly" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://func.mshri.on.ca/fly" }, "https://bioregistry.io/schema/#0000005": "10194", "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/fly/genes/list_functional_scores/", "https://bioregistry.io/schema/#0000027": { "@id": "http://func.mshri.on.ca/fly/genes/list_functional_scores/10194" }, "https://bioregistry.io/schema/#0000029": { "@value": "funcbase.fly" } }, { "@id": "http://www.wikidata.org/entity/Q51044", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "http://agroportal.lirmm.fr/ontologies/SO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { "@id": "https://orcid.org/0000-0003-3889-2879", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Kristian Axelsen" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "kristian.axelsen@sib.swiss" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/gc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://bioregistry.io/registry/mirbase.family", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. 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A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. 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"http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://orcid.org/0000-0003-2136-4519", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Sonia Balyan" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "sonia.balyan@ibdc.rcb.res.in" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "http://edamontology.org/data_3757", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { "@id": "http://www.wikidata.org/entity/Q114677953", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": 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"https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Genome Aggregation Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02561" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://gnomad.broadinstitute.org" }, "https://bioregistry.io/schema/#0000005": "1-55516888-G-GA", "https://bioregistry.io/schema/#0000006": "https://gnomad.broadinstitute.org/variant/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-6025-0015" }, "https://bioregistry.io/schema/#0000024": "https://gnomad.broadinstitute.org/variant/", "https://bioregistry.io/schema/#0000027": { "@id": "https://gnomad.broadinstitute.org/variant/1-55516888-G-GA" }, "https://bioregistry.io/schema/#0000029": { "@value": "gnomad" } }, { "@id": "https://bioportal.bioontology.org/ontologies/CL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://fairsharing.org/FAIRsharing.3wbgm0", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://fairsharing.org/FAIRsharing.y2qws7", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/registry/ssn", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-1595-3213" }, "http://purl.org/dc/terms/description": "This ontology describes sensors, actuators and observations, and related concepts. 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Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Homologous Organ Groups" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://bgee.org/bgee/bgee?page=documentation#sectionHomologyRelationships" }, "https://bioregistry.io/schema/#0000005": "0000255", "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/hog/$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "ftp://ftp.bgee.org/general/ontologies/HOG.obo" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/hog/", "https://bioregistry.io/schema/#0000027": { "@id": "https://biopragmatics.github.io/providers/hog/0000255" }, "https://bioregistry.io/schema/#0000029": { "@value": "hog" } }, { "@id": "http://agroportal.lirmm.fr/ontologies/EDAM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/ligandbook", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "LigandBook" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.identifiers.org/registry/ligandbook" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://ligandbook.org/" }, "https://bioregistry.io/schema/#0000005": "785", "https://bioregistry.io/schema/#0000006": "https://ligandbook.org/package/$1", "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://ligandbook.org/package/", "https://bioregistry.io/schema/#0000027": { "@id": "https://ligandbook.org/package/785" }, "https://bioregistry.io/schema/#0000029": { "@value": "ligandbook" } }, { "@id": "https://registry.identifiers.org/registry/identifiers.namespace", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://registry.bio2kg.org/resource/obi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/registry/saref.ehaw", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both: - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e. - Use case 1 ?elderly at home monitoring and support?, - Use case 2 ?monitoring and support of healthy lifestyles for citizens?, - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification. SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology. ![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg) For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). For embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e. - Use case 1 “elderly at home monitoring and support”, - Use case 2 “monitoring and support of healthy lifestyles for citizens”, - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "http://aber-owl.net/ontology/S4EHAW" }, { "@id": 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"@id": "https://saref.etsi.org/saref4ehaw/Activity" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.ehaw" } }, { "@id": "_:N363c9e4b69c24bbbb3ed4636e75d2528", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "LOV Migration" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "mohamed-el-amine.boukerfa@inrae.fr" } }, { "@id": "https://www.obofoundry.org/ontology/epo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/registry/vbase2", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" }, 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"https://bioregistry.io/schema/#0000005": "OS-27", "https://bioregistry.io/schema/#0000006": "https://osdr.nasa.gov/bio/repo/data/experiments/$1", "https://bioregistry.io/schema/#0000008": "^OS-\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-8542-2389" }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0001-9439-5346" }, "https://bioregistry.io/schema/#0000024": "https://osdr.nasa.gov/bio/repo/data/experiments/", "https://bioregistry.io/schema/#0000027": { "@id": "https://osdr.nasa.gov/bio/repo/data/experiments/OS-27" }, "https://bioregistry.io/schema/#0000029": { "@value": "nasaosdr.experiment" } }, { "@id": "https://cropontology.org/ontology/CO_333", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { "@id": "https://bioregistry.io/registry/sao", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Subcellular Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.bio2kg.org/resource/sao" }, { "@id": "https://bioportal.bioontology.org/ontologies/SAO" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/SAO" }, { "@id": "https://www.obofoundry.org/ontology/sao" }, { "@id": "http://www.wikidata.org/entity/Q114677911" }, { "@id": "http://aber-owl.net/ontology/SAO" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "owl" }, { "@value": "biochemistry" }, { "@value": "obo" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://ccdb.ucsd.edu/CCDBWebSite/sao.html" }, "https://bioregistry.io/schema/#0000005": "5277619", "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/sao$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { "@id": "http://aber-owl.net/media/ontologies/SAO/2/sao.owl" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { "@id": "_:N22f54049b83e4e1289264bdcf6d2a27b" }, "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/sao", "https://bioregistry.io/schema/#0000027": { "@id": "http://uri.neuinfo.org/nif/nifstd/sao5277619" }, "https://bioregistry.io/schema/#0000029": { "@value": "sao" } }, { "@id": "_:N22f54049b83e4e1289264bdcf6d2a27b", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Stephen Larson" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "slarson@ncmir.ucsd.edu" } }, { "@id": 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In particular the following ones have been considered in the project:\n- [Freesound](https://freesound.org/), a collaborative database of Creative Commons Licensed sounds;\n- [Jamendo](https://www.jamendo.com/), a music website for independent artists;\n- [Europeana Sounds](https://www.eusounds.eu/), a European project collecting and sharing data from several archives of sounds and sound-related media;\n- [Internet Archive](https://archive.org/), a non-profit library of millions of freely accessible media contents.\n\n### The base model\n
![A diagram showing the entities Work, Expression, Manifestation, Item](./img/FRBR-Group-1-entities-and-basic-relations.svg.png)
\nThe Audio Commons ontology is based on [Functional Requirements for Bibliographic Records (FRBR)](https://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records), a bibliographic model designed for user tasks of retrieval and access in online library catalogues and bibliographic databases. FRBR distinguish the products of intellectual or artistic endeavor in four main classes: work, expression, manifestation, item. It is available as RDF vocabulary at https://vocab.org/frbr/core. For further information on FRBR, check the [standard](https://repository.ifla.org/handle/123456789/811).\n\nAnother important model related to audio is the [Music Ontology](http://musicontology.com/), which is also based on the FRBR model. Our ontology is more generic than the Music Ontology but is interoperable with it to support the specificities of music-related audio content.\n\nThe Audio Commons ontology works also in conjunction with\n- [Dublin Core](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/) for basic metadata,\n- [EBU Core](https://www.ebu.ch/metadata/ontologies/ebucore/) for technical properties of audio files,\n- [SKOS](https://www.w3.org/TR/skos-primer/) to support taxonomic classifications,\n- [Creative Commons Licensing schema](https://creativecommons.org/ns) to represent media licensing,\n- [Event ontology](http://motools.sf.net/event/event.html) for the formalisation of events,\n- [Audio Features Ontology](https://w3id.org/afo/onto/) for the characterisation of audio features.\n\n### Ontology overview\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Skeleton.png)\n\nThe figure above shows the most general classes and properties of the Audio Commons ontology and their relationship with classes of the FRBR and the Music Ontology:\n- **`ac:AudioExpression`**, the specific intellectual or artistic form that a work takes each time it is _realised_, in the audio domain, e.g., the recording or synthesis of music or sounds;\n- **`ac:AudioManifestation`**, the physical embodiment of an audio expression, e.g., a musical track, a sound, an album; \n- **`ac:AudioItem`**, a single exemplar of an audio manifestation, e.g., a copy of a CD or a specific media file.\n\nThe FRBR class Work, representing a distinct intellectual or artistic creation on a more conceptual level, has not been specialised in Audio Commons.\n\nThe Audio Commons ontology provides a generic schema for audio classification through the property **`ac:audioCategory`** that associates any audio expression, manifestation, or item to some generic **`ac:AudioCategory`**. These two terms can be specialised to provide spefic categorisations.\n\n### Manifestations: audio clips and collections\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Manifestation.png)\n\nThe figure above shows classes and properties related to audio manifestations. An instance of **`ac:AudioClip`**, a subclass of `ac:AudioManifestation`, is any audio segment that has been published in some form or uploaded for consumption, for example, a track in a music label's repository or a sound in an audio repository, library or archive.\n\nThe class **`ac:AudioCollection`**, another subclass of `ac:AudioManifestation`, is used to represent collections of audio clips. The class **`ac:AudioCollectionNode`** is used to represent single nodes of a collection, offering local information like the index in the collection and pointers to previous and next nodes. The separation between the collection node and its actual content (e.g., an `ac:AudioClip`) permits the same content to be shared in multiple collections.\n\nThe content of each node of a collection is not limited to an `ac:AudioClip`, but may contain any `ac:AudioManifestation`. Collections can thus contain other collections to support specific cases, e.g. a mapping to the Music Ontology model where an `mo:Release` can contain multiple `mo:Record`(s) that can in turn contain multiple `mo:Track`(s).\n### Items: audio files\n![A diagram showing ac:Item class and related class and properties](./img/AC-Ontology-Item.png)\n\nAn `ac:AudioItem` is a concrete exemplar of an audio manifestation. In our domain, the main exemplars are the actual audio files. \n\nThe corresponding class **`ac:AudioFile`** is a subclass of `ac:AudioItem`. It is subclass of `ebu:MediaResource` too and the corresponging properties of EBU Core can be used to describe the file (e.g., `ebu:hasEncodingFormat`, `ebu:fileSize`).\n\n### Expressions: audio signals\n![A diagram showing ac:Expression class and related class and properties](./img/AC-Ontology-Expression.png)\n\nWhile `ac:AudioFile` represents a concrete file encoded in a certain format, **`ac:DigitalSignal`** is the representation of the corresponding digital signal. `ac:DigitalSignal` is a subclass of `ac:MusicalExpression`. \n\nThe data properties `ac:sampleRate`, `ac:bitsPerSample`, and `ac:channels`, associate a signal with its basic features specific to digital representations.\n\nThe property `ac:publicationOf` can be used to associate an `ac:AudioClip` with the corresponding digital signal. The property `ac:encodes` instead, associates an `ac:AudioFile` with the encoded digital signal.\n\n### Events: recording/syntesis\n![A diagram showing ac:SignalProduction class and related class and properties!](./img/AC-Ontology-SignalProduction.png)\n\nThe description of temporal events is crucial to formalise and document transitions in the workflow of audio production and publication. The class `event:Event` of the Event Ontology is thus specialised for specific actions that are interesting for the audio domain.\n\nUsing the `event:Event` class, details of an event such as its location in time and space, its factor and its products may be explicitly described. Moreover, events can be composed using the property `event:sub_event`, to build complex events.\n\nThe class `ac:SignalProduction` represents the act of producing a `ac:Signal`, which could be either an `ac:AnalogSignal` or a `ac:DigitalSignal`. This is complemented by **`ac:Recording`**, representing the process of recording a sound (`ac:Sound`) or the product of **`ac:Synthesis`**, in case of artificially generated sounds. \n\n### Events (continued): publication\n![A diagram showing ac:Publication class and related class and properties!](./img/AC-Ontology-Publication.png)\n\nThe event **`ac:AudioPublication`** represents the public release of a piece of work, e.g., the release of a new album by a band.\n\n### Usage Example\n![A diagram showing an example of ontology usage!](./img/AC_Example-AudioClip.png)\n\nThe figure above shows an example of use of the Audio Commons ontology to represent a sound from the Freesound database. 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"@id": "https://registry.identifiers.org/registry/disprot.region" }, { "@id": "https://registry.identifiers.org/registry/ricenetdb.compound" }, { "@id": "https://registry.identifiers.org/registry/biomodels.kisao" }, { "@id": "https://registry.identifiers.org/registry/noncodev4.rna" }, { "@id": "https://registry.identifiers.org/registry/img.gene" }, { "@id": "https://registry.identifiers.org/registry/nextdb" }, { "@id": "https://registry.identifiers.org/registry/brenda" }, { "@id": "https://registry.identifiers.org/registry/oryzabase.stage" }, { "@id": "https://registry.identifiers.org/registry/sheepqtldb" }, { "@id": "https://registry.identifiers.org/registry/pharmgkb.disease" }, { "@id": "https://registry.identifiers.org/registry/ega" }, { "@id": "https://registry.identifiers.org/registry/beetlebase" }, { "@id": "https://registry.identifiers.org/registry/nuclearbd" }, { "@id": "https://registry.identifiers.org/registry/bbkg" }, { "@id": 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"https://fairsharing.org/FAIRsharing.b9znd5" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ICO" }, { "@id": "https://www.obofoundry.org/ontology/ico" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico" }, { "@id": "http://aber-owl.net/ontology/ICO" }, { "@id": "http://www.ontobee.org/ontology/ICO" }, { "@id": "http://www.wikidata.org/entity/Q55118417" }, { "@id": "https://bioportal.bioontology.org/ontologies/ICO" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "clinical studies" }, { "@value": "biomedical science" }, { "@value": "health science" }, { "@value": "medicine" }, { "@value": "obo" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/ICO-ontology/ICO" }, "https://bioregistry.io/schema/#0000005": "0000066", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ICO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/ico.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000018": { "@id": "https://bioregistry.io/registry/scdo" }, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-9189-9661" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ICO_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/ICO_0000066" }, "https://bioregistry.io/schema/#0000029": { "@value": "ico" } }, { "@id": "http://www.wikidata.org/entity/Q81661782", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4ener", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/lov" } }, { "@id": "https://orcid.org/0000-0002-5101-5275", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Jonatan Jalle Steller" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "jonatan.steller@adwmainz.de" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://orcid.org/0000-0002-2497-3427", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Eric P. Nawrocki" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "nawrocke@ncbi.nlm.nih.gov" } }, { "@id": "https://bioregistry.io/registry/wbbt", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Ontology about the gross anatomy of the C. elegans", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "C. elegans Gross Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt" }, { "@id": "https://fairsharing.org/FAIRsharing.phk7dd" }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt" }, { "@id": "http://www.wikidata.org/entity/Q81661834" }, { "@id": "http://www.ontobee.org/ontology/WBbt" }, { "@id": "https://bioportal.bioontology.org/ontologies/WB-BT" }, { "@id": "https://registry.bio2kg.org/resource/wbbt" }, { "@id": "https://www.obofoundry.org/ontology/wbbt" }, { "@id": "http://aber-owl.net/ontology/WBBT" }, { "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "worm" }, { "@value": "anatomy" }, { "@value": "cell" }, { "@value": "life science" }, { "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" }, "https://bioregistry.io/schema/#0000005": "0001290", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBbt_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/wbbt.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-8151-7479" }, "https://bioregistry.io/schema/#0000023": { "@value": "WBbt" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBbt_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/WBbt_0001290" }, "https://bioregistry.io/schema/#0000029": { "@value": "wbbt" } }, { "@id": "https://www.re3data.org/repository/r3d100012171", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { "@id": "https://bioregistry.io/registry/hpath", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.\n\nThe original structure of the histopathology ontology was designed ab initio when the [INHAND](http://www.goreni.org/) manuscripts were not available. However, the ontology has been repetitively reviewed and updated to align with the subsequently published INHAND manuscripts. During this process cross references to INHAND lesion identifiers were added to the ontology. [from GitHub]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/Novartis/hpath" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Histopathology Ontology" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/Novartis/hpath" }, "https://bioregistry.io/schema/#0000005": "2000191", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MC_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { "@id": "https://raw.githubusercontent.com/Novartis/hpath/master/src/hpath.obo" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-8372-8387" }, "https://bioregistry.io/schema/#0000023": { "@value": "MC" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MC_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/MC_2000191" }, "https://bioregistry.io/schema/#0000029": { "@value": "hpath" } }, { "@id": "http://www.wikidata.org/entity/Q81661827", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "http://aber-owl.net/ontology/ICD9CM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://www.uniprot.org/database/DB-0152", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "http://www.wikidata.org/entity/P2057", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://aber-owl.net/ontology/MO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/registry/rrrc", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Rat Resource and Research Center" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "research" }, { "@value": "pathogen" }, { "@value": "biomedical" }, { "@value": "infectious" }, { "@value": "rat model" }, { "@value": "drug" }, { "@value": "cell line" }, { "@value": "embryo" }, { "@value": "database" }, { "@value": "animal" }, { "@value": "ovarian" }, { "@value": "nuclear" }, { "@value": "human" }, { "@value": "disease" }, { "@value": "strain" }, { "@value": "genome" }, { "@value": "cryopreserved" }, { "@value": "hybrid" }, { "@value": "catalog" }, { "@value": "germplasma" }, { "@value": "protocol" }, { "@value": "embryonic stem cell" }, { "@value": "stem cell" }, { "@value": "rat" }, { "@value": "tissue" }, { "@value": "gamete" }, { "@value": "inbred" }, { "@value": "mutant" }, { "@value": "molecular" }, { "@value": "reagent" }, { "@value": "genotyping" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.rrrc.us/" }, "https://bioregistry.io/schema/#0000005": "961", "https://bioregistry.io/schema/#0000006": "https://www.rrrc.us/Strain/?x=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://www.rrrc.us/Strain/?x=", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.rrrc.us/Strain/?x=961" }, "https://bioregistry.io/schema/#0000029": { "@value": "rrrc" } }, { "@id": "https://bioregistry.io/registry/saref.system", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.\n\n\n![SAREF4SYST overview](diagrams/overview.png)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF4SYST: an extension of SAREF for typology of systems and their inter-connections" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://terminology.tib.eu/ts/ontologies/s4syst" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4syst" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "iot" }, { "@value": "nfdi4ing" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4syst/" }, "https://bioregistry.io/schema/#0000005": "Connection", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4syst/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "s4syst" }, "https://bioregistry.io/schema/#0000024": "https://saref.etsi.org/saref4syst/", "https://bioregistry.io/schema/#0000027": { "@id": "https://saref.etsi.org/saref4syst/Connection" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.system" } }, { "@id": "https://fairsharing.org/FAIRsharing.84c1a7", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/registry/nvs", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "SKOS concept collections held in the NERC Vocabulary Server. A concept collection is useful where a group of concepts shares something in common, and it is convenient to group them under a common label. In the NVS, concept collections are synonymous with controlled vocabularies or code lists. Each collection is associated with its governance body. 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WebsiteHomepageNotes
ExplorEnzhttps://www.enzyme-database.orgThis is the resource officially recommended by IUBMB
IUBMB (via by Queen Mary)https://iubmb.qmul.ac.uk/enzymeThis is a web-based version of the 1992 publication.
IntEnzhttps://www.ebi.ac.uk/intenzShutdown in 2024
ExPaSyhttps://enzyme.expasy.org
EnzymePortalhttps://www.ebi.ac.uk/enzymeportal
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It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "GnpIS" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://fairsharing.org/FAIRsharing.dw22y3" }, { "@id": "https://www.re3data.org/repository/r3d100012647" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS" }, { "@id": "https://registry.identifiers.org/registry/gnpis" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "life science" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://urgi.versailles.inra.fr/gnpis/" }, "https://bioregistry.io/schema/#0000005": "AY109603", "https://bioregistry.io/schema/#0000006": "https://urgi.versailles.inra.fr/gnpis/#result/term=$1", "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-3001-4908" }, "https://bioregistry.io/schema/#0000024": "https://urgi.versailles.inra.fr/gnpis/#result/term=", "https://bioregistry.io/schema/#0000027": { "@id": "https://urgi.versailles.inra.fr/gnpis/#result/term=AY109603" }, "https://bioregistry.io/schema/#0000029": { "@value": "gnpis" } }, { "@id": "http://edamontology.org/data_2766", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { "@id": "https://registry.identifiers.org/registry/cellosaurus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/wot.hypermedia", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "an ontology for links and forms, the main hypermedia controls in use on the Web. This ontology offers, among others, a means to reify RDF statements interpreted as links between Web resources. It also provides a versatile exchange format for links and forms in RESTful Web applications. [from homepage]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Web of Things Hypermedia Controls Ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.w3.org/2019/wot/hypermedia#" }, "https://bioregistry.io/schema/#0000005": "AdditionalExpectedResponse", "https://bioregistry.io/schema/#0000006": "https://www.w3.org/2019/wot/hypermedia#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://www.w3.org/2019/wot/hypermedia#", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.w3.org/2019/wot/hypermedia#AdditionalExpectedResponse" }, "https://bioregistry.io/schema/#0000029": { "@value": "wot.hypermedia" } }, { "@id": "https://orcid.org/0000-0002-9074-3507", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Paul D Thomas" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "pdthomas@usc.edu" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/pocketome", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Pocketome" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://fairsharing.org/FAIRsharing.tc6df8" }, { "@id": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=537" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME" }, { "@id": "https://registry.identifiers.org/registry/pocketome" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "life science" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.pocketome.org/sfSearch.cgi?act=browseall" }, "https://bioregistry.io/schema/#0000005": "1433C_TOBAC_1_252", "https://bioregistry.io/schema/#0000006": "http://www.pocketome.org/files/$1.html", "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-9309-2976" }, "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pocketome:", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.pocketome.org/files/1433C_TOBAC_1_252.html" }, "https://bioregistry.io/schema/#0000029": { "@value": "pocketome" } }, { "@id": "https://registry.identifiers.org/registry/pmdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/hdl", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). 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(from website)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Handle" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://fairsharing.org/FAIRsharing.0b7e54" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "subject agnostic" }, { "@value": "centrally registered identifier" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.handle.net/" }, "https://bioregistry.io/schema/#0000005": "2381/12775", "https://bioregistry.io/schema/#0000006": "http://hdl.handle.net/$1", "https://bioregistry.io/schema/#0000008": "^\\d+/.+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "handle" }, "https://bioregistry.io/schema/#0000024": "http://hdl.handle.net/", "https://bioregistry.io/schema/#0000027": { "@id": "http://hdl.handle.net/2381/12775" }, "https://bioregistry.io/schema/#0000029": { "@value": "hdl" } }, { "@id": "https://registry.identifiers.org/registry/fbol", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "http://edamontology.org/data_1042", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { "@id": "https://bioregistry.io/registry/sweet.prope", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/registry/sweet" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Property Energy" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "energy" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/propEnergy/" }, "https://bioregistry.io/schema/#0000005": "AvailablePotentialEnergy", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/propEnergy/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "soprope" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/propEnergy/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/propEnergy/AvailablePotentialEnergy" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.prope" } }, { "@id": "http://aber-owl.net/ontology/OAE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "http://www.wikidata.org/entity/Q81661690", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://registry.identifiers.org/registry/myco.smeg", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://edamontology.org/data_1011", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { "@id": "https://bioregistry.io/registry/gramene.taxonomy", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Gramene Taxonomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.identifiers.org/registry/gramene.taxonomy" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.gramene.org/" }, "https://bioregistry.io/schema/#0000005": "013681", "https://bioregistry.io/schema/#0000006": "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://archive.gramene.org/db/ontology/search?id=GR_tax:", "https://bioregistry.io/schema/#0000027": { "@id": "https://archive.gramene.org/db/ontology/search?id=GR_tax:013681" }, "https://bioregistry.io/schema/#0000029": { "@value": "gramene.taxonomy" } }, { "@id": "http://www.wikidata.org/entity/Q111516803", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://registry.identifiers.org/registry/metanetx.chemical", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://registry.identifiers.org/registry/autdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://fairsharing.org/FAIRsharing.ca48xs", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://www.re3data.org/repository/r3d100013650", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { "@id": "https://bioregistry.io/registry/olatdv", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Life cycle stages for Medaka", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/obophenotype/developmental-stage-ontologies" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Medaka Developmental Stages" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "http://www.ontobee.org/ontology/OlatDv" }, { "@id": "https://bioportal.bioontology.org/ontologies/OLATDV" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV" }, { "@id": "https://www.obofoundry.org/ontology/olatdv" }, { "@id": "https://fairsharing.org/FAIRsharing.c86z66" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv" }, { "@id": "http://www.wikidata.org/entity/Q81661748" }, { "@id": "http://aber-owl.net/ontology/OLATDV" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "life cycle stage" }, { "@value": "developmental biology" }, { "@value": "aquaculture" }, { "@value": "life science" }, { "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv" }, "https://bioregistry.io/schema/#0000005": "0000210", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OlatDv_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/olatdv.owl" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-9415-5104" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OlatDv_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/OlatDv_0000210" }, "https://bioregistry.io/schema/#0000029": { "@value": "olatdv" } }, { "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { "@id": "https://bioregistry.io/registry/phosphopoint.protein", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. 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} }, { "@id": "https://registry.bio2kg.org/resource/propreo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://registry.identifiers.org/registry/gmd.profile", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://www.wikidata.org/entity/P354", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioregistry.io/registry/sweet.rea", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { 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"https://bioregistry.io/registry/rdf" }, { "@id": "https://bioregistry.io/registry/owl" }, { "@id": "https://bioregistry.io/registry/faldo" }, { "@id": "https://bioregistry.io/registry/qudt" }, { "@id": "https://bioregistry.io/registry/shex" }, { "@id": "https://bioregistry.io/registry/foaf" }, { "@id": "https://bioregistry.io/registry/oa" }, { "@id": "https://bioregistry.io/registry/dcterms" }, { "@id": "https://bioregistry.io/registry/xsd" }, { "@id": "https://bioregistry.io/registry/swrl" }, { "@id": "https://bioregistry.io/registry/sh" }, { "@id": "https://bioregistry.io/registry/oslc" }, { "@id": "https://bioregistry.io/registry/skos" }, { "@id": "https://bioregistry.io/registry/dc" }, { "@id": "https://bioregistry.io/registry/rdfs" }, { "@id": "https://bioregistry.io/registry/bibo" }, { "@id": "https://bioregistry.io/registry/dctypes" }, { "@id": "https://bioregistry.io/registry/prov" }, { "@id": "https://bioregistry.io/registry/qb" }, { "@id": 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"http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Fengcheng Li" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "lifengcheng@zju.edu.cn" } }, { "@id": "https://registry.identifiers.org/registry/vario", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/trnadbce", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "tRNA Gene Database" }, 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This extension is based on the ISO 16739:2013 Industry Foundation Classes (IFC) standard for data sharing in the construction and facility management industries. The descriptions of the classes and properties extracted from IFC have been taken from the IFC documentation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF extension for building devices" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4bldg" }, { "@id": "https://terminology.tib.eu/ts/ontologies/s4bldg" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "digital planning and construction" }, { "@value": "engineering" }, { "@value": "fid baudigital" }, { "@value": "iot" }, { "@value": "nfdi4ing" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4bldg/" }, "https://bioregistry.io/schema/#0000005": "Actuator", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4bldg/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "s4bldg" }, "https://bioregistry.io/schema/#0000024": "https://saref.etsi.org/saref4bldg/", "https://bioregistry.io/schema/#0000027": { "@id": "https://saref.etsi.org/saref4bldg/Actuator" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.building" } }, { "@id": "https://bioregistry.io/registry/rexo", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Regulation of Gene Expression", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Regulation of Gene Expression Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "http://aber-owl.net/ontology/REXO" }, { "@id": "https://fairsharing.org/FAIRsharing.recas1" }, { "@id": "https://bioportal.bioontology.org/ontologies/REXO" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "life science" }, { "@value": "orthologous" }, { "@value": "ontology" }, { "@value": "expression data" }, { "@value": "regulation of gene expression" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.semantic-systems-biology.org/apo" }, "https://bioregistry.io/schema/#0000010": { "@id": "https://www.bio.ntnu.no/ontology/ReXO/rexo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-1171-9876" }, "https://bioregistry.io/schema/#0000029": { "@value": "rexo" } }, { "@id": "https://fairsharing.org/FAIRsharing.e1byny", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "http://aber-owl.net/ontology/HSO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { "@id": "https://bioregistry.io/registry/mcc", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. 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"http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Material Energy" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "energy" }, { "@value": "materials" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/matrEnergy/" }, "https://bioregistry.io/schema/#0000005": "Battery", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/matrEnergy/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "somaen" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/matrEnergy/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/matrEnergy/Battery" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.maen" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/UO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/sweet.repsg3", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry 3D", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Representation Space Geometry 3D" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "representation space geometry 3d" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/reprSpaceGeometry3D/" }, "https://bioregistry.io/schema/#0000005": "AirSpace", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/reprSpaceGeometry3D/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "sorepsg3" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/reprSpaceGeometry3D/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/reprSpaceGeometry3D/AirSpace" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.repsg3" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.identifiers.org/registry/datanator.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02541", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://registry.identifiers.org/registry/complexportal", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://edamontology.org/data_1153", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { "@id": "https://bioregistry.io/collection/0000010", "@type": "https://bioregistry.io/schema/#0000003", "http://purl.org/dc/elements/1.1/creator": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/elements/1.1/description": { "@value": "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" }, "http://purl.org/dc/terms/hasPart": [ { "@id": "https://bioregistry.io/registry/orphanet.ordo" }, { "@id": "https://bioregistry.io/registry/hgnc" }, { "@id": "https://bioregistry.io/registry/civic.did" }, { "@id": "https://bioregistry.io/registry/civic.sid" }, { "@id": "https://bioregistry.io/registry/civic.vid" }, { "@id": "https://bioregistry.io/registry/pharmgkb.drug" }, { "@id": "https://bioregistry.io/registry/panther.family" }, { "@id": "https://bioregistry.io/registry/mgi" }, { "@id": "https://bioregistry.io/registry/panther.pathway" }, { "@id": "https://bioregistry.io/registry/pmc" }, { "@id": "https://bioregistry.io/registry/pharmgkb.disease" }, { "@id": "https://bioregistry.io/registry/agrkb" }, { "@id": "https://bioregistry.io/registry/panther.pthcmp" }, { "@id": "https://bioregistry.io/registry/ena.embl" }, { "@id": "https://bioregistry.io/registry/civic.gid" }, { "@id": "https://bioregistry.io/registry/brenda.ligand" }, { "@id": "https://bioregistry.io/registry/civic.tid" }, { "@id": "https://bioregistry.io/registry/orpha" }, { "@id": "https://bioregistry.io/registry/gbif" }, { "@id": "https://bioregistry.io/registry/gnomad" }, { "@id": "https://bioregistry.io/registry/pdb" }, { "@id": "https://bioregistry.io/registry/pombase" }, { "@id": "https://bioregistry.io/registry/uniprot" }, { "@id": "https://bioregistry.io/registry/ensembl" }, { "@id": "https://bioregistry.io/registry/rhea" }, { "@id": "https://bioregistry.io/registry/civic.aid" }, { "@id": "https://bioregistry.io/registry/brenda.ligandgroup" }, { "@id": "https://bioregistry.io/registry/interpro" }, { "@id": "https://bioregistry.io/registry/reactome" }, { "@id": "https://bioregistry.io/registry/sgd" }, { "@id": "https://bioregistry.io/registry/bacdive" }, { "@id": "https://bioregistry.io/registry/px" }, { "@id": "https://bioregistry.io/registry/ecocyc" }, { "@id": "https://bioregistry.io/registry/bto" }, { "@id": "https://bioregistry.io/registry/chembl" }, { "@id": "https://bioregistry.io/registry/rgd" }, { "@id": "https://bioregistry.io/registry/civic.eid" }, { "@id": "https://bioregistry.io/registry/flybase" }, { "@id": "https://bioregistry.io/registry/pharmgkb.pathways" }, { "@id": "https://bioregistry.io/registry/pharmgkb.gene" }, { "@id": "https://bioregistry.io/registry/chebi" }, { "@id": "https://bioregistry.io/registry/brenda" }, { "@id": "https://bioregistry.io/registry/go" }, { "@id": "https://bioregistry.io/registry/eupath" }, { "@id": "https://bioregistry.io/registry/zfin" }, { "@id": "https://bioregistry.io/registry/wormbase" }, { "@id": "https://bioregistry.io/registry/panther.node" }, { "@id": "https://bioregistry.io/registry/ucsc" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Global Biodata Coalition - Global Core Biodata Resources" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GOA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/ceds.element", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Common Entity Data Standards (CEDS) Domain Entity Schema (DES) provides a hierarchy of domains, entities, categories, and elements. It is intended for use primarily by people as an index to search, map, and organize elements in a logical way. [from homepage]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Common Entity Data Standards - Domain Entity Schema" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://ceds.ed.gov/domainEntitySchema.aspx" }, "https://bioregistry.io/schema/#0000005": "000254", "https://bioregistry.io/schema/#0000006": "https://ceds.ed.gov/element/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://ceds.ed.gov/element/", "https://bioregistry.io/schema/#0000027": { "@id": "https://ceds.ed.gov/element/000254" }, "https://bioregistry.io/schema/#0000029": { "@value": "ceds.element" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://www.uniprot.org/database/DB-0049", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://registry.identifiers.org/registry/worms", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://orcid.org/0000-0002-1560-809X", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Jesper Friis" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "jesper.friis@sintef.no" } }, { "@id": "https://bioregistry.io/registry/antweb", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "AntWeb" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb" }, { "@id": "http://www.wikidata.org/entity/P5299" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB" }, { "@id": "https://registry.bio2kg.org/resource/antweb" }, { "@id": "https://fairsharing.org/FAIRsharing.yk38tw" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb" }, { "@id": "https://registry.identifiers.org/registry/antweb" }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc01710" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "anatomy" }, { "@value": "life science" }, { "@value": "classification" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.antweb.org/" }, "https://bioregistry.io/schema/#0000005": "casent0106247", "https://bioregistry.io/schema/#0000006": "http://www.antweb.org/specimen.do?name=$1", "https://bioregistry.io/schema/#0000008": "^casent\\d+(\\-D\\d+)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://www.antweb.org/specimen.do?name=", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.antweb.org/specimen.do?name=casent0106247" }, "https://bioregistry.io/schema/#0000029": { "@value": "antweb" } }, { "@id": "https://fairsharing.org/FAIRsharing.w2eeqr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioportal.bioontology.org/ontologies/GECKO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/idsa", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "This ontology defines classes and properties for describing participants, infrastructure, data and services of the International Data Spaces (formerly known as Industrial Data Space).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/International-Data-Spaces-Association/InformationModel" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "International Data Spaces Information Model" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://terminology.tib.eu/ts/ontologies/idsa" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "nfdi4ing" }, { "@value": "engineering" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.internationaldataspaces.org/" }, "https://bioregistry.io/schema/#0000006": "https://w3id.org/idsa/core/$1", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000024": "https://w3id.org/idsa/core/", "https://bioregistry.io/schema/#0000029": { "@value": "idsa" } }, { "@id": "https://bioregistry.io/registry/bgee.organ", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-3947-488X" }, "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Bgee organ" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.identifiers.org/registry/bgee.organ" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://bgee.unil.ch/bgee/bgee" }, "https://bioregistry.io/schema/#0000005": "EHDAA:2185", "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1", "https://bioregistry.io/schema/#0000008": "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=", "https://bioregistry.io/schema/#0000027": { "@id": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=EHDAA:2185" }, "https://bioregistry.io/schema/#0000029": { "@value": "bgee.organ" } }, { "@id": "https://fairsharing.org/FAIRsharing.4fa657", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://registry.identifiers.org/registry/cgd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://www.obofoundry.org/ontology/pcl", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/peptideatlas.peptide", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "PeptideAtlas Peptide" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc01812" }, { "@id": "https://registry.identifiers.org/registry/peptideatlas" }, { "@id": "https://www.re3data.org/repository/r3d100010889" }, { "@id": "https://fairsharing.org/FAIRsharing.dvyrsz" }, { "@id": "https://registry.bio2kg.org/resource/peptideatlas" }, { "@id": "https://www.uniprot.org/database/DB-0071" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas" }, { 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