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SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology. ![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg) For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). 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"@id": "http://aber-owl.net/ontology/ICEO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "http://aber-owl.net/ontology/PRIDE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/registry/sweet.phatmol", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Lightning", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/registry/sweet" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Phenomena Atmosphere Lightning" }, 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This vocabulary provides values for the type attribute of the following LIDO identifier elements: Published Object Identifier, LIDO Metadata Record-ID, Actor Identifier, Concept Identifier, Description/Descriptive Note Identifier, Event Identifier, Legal Body ID, Object Identifier, Place Identifier, Record Info ID, Record ID, Resource Identification Number.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "LIDO Terminology Identifier Type" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://bartoc.org/en/node/18655" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://terminology.lido-schema.org/identifier_type" }, "https://bioregistry.io/schema/#0000005": "iri", "https://bioregistry.io/schema/#0000006": "http://terminology.lido-schema.org/identifier_type/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://terminology.lido-schema.org/identifier_type/", "https://bioregistry.io/schema/#0000027": { "@id": "http://terminology.lido-schema.org/identifier_type/iri" }, "https://bioregistry.io/schema/#0000029": { "@value": "lido.identifier" } }, { "@id": "https://registry.identifiers.org/registry/imgt.hla", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/mathalgodb", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "This vocabulary and grammar defines which types of objects are admissible to the MathAlgoDB - the algorithm knowledge graph - and by which properties they can relate. All in all five classes, \"problem\", \"algorithm\", \"benchmark\", \"software\", \"publication\", are defined, as well as a minimal but intuitively intelligible number of properties. As opposed to the more liberal WikiData, MathAlgoDB relies on the strict adherence to the ontology to provide a reliable machine-readable database of (numerical) algorithm knowledge. [from homepage]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Algorithm Knowledge Graph Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://terminology.tib.eu/ts/ontologies/mathalgodb" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "mathematics" }, { "@value": "ontology" }, { "@value": "mardi" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://mathalgodb.mardi4nfdi.de/static/widoco/v1/index-en.9634daaec9f8.html" }, "https://bioregistry.io/schema/#0000005": "algorithm", "https://bioregistry.io/schema/#0000006": "https://mardi4nfdi.de/mathalgodb/0.1#$1", "https://bioregistry.io/schema/#0000010": { "@id": "https://mathalgodb.mardi4nfdi.de/static/widoco/v1/ontology.ttl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-2194-6754" }, "https://bioregistry.io/schema/#0000024": "https://mardi4nfdi.de/mathalgodb/0.1#", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/04ncnzm65" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://mardi4nfdi.de/mathalgodb/0.1#algorithm" }, "https://bioregistry.io/schema/#0000029": { "@value": "mathalgodb" } }, { "@id": "https://biodivportal.gfbio.org/ontologies/OIM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biodivportal" } }, { "@id": "https://togoid.dbcls.jp/#Taxonomy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/togoid" } }, { "@id": "https://www.obofoundry.org/ontology/fypo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ARO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.identifiers.org/registry/intact.molecule", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://www.wikidata.org/entity/P11160", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://www.uniprot.org/database/DB-0206", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/TOL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.bio2kg.org/resource/shibase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://registry.identifiers.org/registry/psipar", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://agroportal.lirmm.fr/ontologies/PECO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { "@id": "https://orcid.org/0000-0003-4221-7956", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Michael Witt" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "mwitt@purdue.edu" } }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { "@id": "https://bioregistry.io/registry/vsdb", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Veterinary Substances DataBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://fairsharing.org/FAIRsharing.00be0d" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "chemical entity" }, { "@value": "environmental fate" }, { "@value": "ecotoxicity" }, { "@value": "toxicology" }, { "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://sitem.herts.ac.uk/aeru/vsdb" }, "https://bioregistry.io/schema/#0000005": "1868", "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-7666-5584" }, "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vsdb:", "https://bioregistry.io/schema/#0000027": { "@id": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/1868.htm" }, "https://bioregistry.io/schema/#0000029": { "@value": "vsdb" } }, { "@id": "http://www.wikidata.org/entity/P3890", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioportal.bioontology.org/ontologies/CTENO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "http://www.ontobee.org/ontology/COLAO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/dcterms", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/zazuko" } }, { "@id": "https://bioregistry.io/registry/pepbank", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "PepBank Peptide Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.bio2kg.org/resource/pepbank" }, { "@id": "http://www.pathguide.org/fullrecord.php?DBID=235" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "structure" }, { "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://pepbank.mgh.harvard.edu/" }, "https://bioregistry.io/schema/#0000005": "21877", "https://bioregistry.io/schema/#0000006": "http://pepbank.mgh.harvard.edu/interactions/details/$1", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "http://pepbank.mgh.harvard.edu/interactions/details/", "https://bioregistry.io/schema/#0000027": { "@id": "http://pepbank.mgh.harvard.edu/interactions/details/21877" }, "https://bioregistry.io/schema/#0000029": { "@value": "pepbank" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/skos", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://registry.bio2kg.org/resource/genage", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://orcid.org/0000-0002-7509-4801", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Tom Gillespie" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "tgbugs@gmail.com" } }, { "@id": "https://bioportal.bioontology.org/ontologies/SPDX-LICENSES", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc01909", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://www.uniprot.org/database/DB-0223", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://orcid.org/0000-0002-5959-6190", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Evan E Bolton" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "bolton@ncbi.nlm.nih.gov" } }, { "@id": "https://fairsharing.org/FAIRsharing.ae8hpt", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/go", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://fairsharing.org/FAIRsharing.5403x", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "http://www.wikidata.org/entity/P3608", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "http://www.wikidata.org/entity/P3431", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://registry.identifiers.org/registry/biolink", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://registry.bio2kg.org/resource/string", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/foaf", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Friend of a Friend" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://terminology.tib.eu/ts/ontologies/foaf" }, { "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf" }, { "@id": "https://bioportal.bioontology.org/ontologies/FOAF" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/foaf" }, { "@id": "http://aber-owl.net/ontology/FOAF" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/foaf" }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/foaf" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ess" }, { "@value": "people" }, { "@value": "digital planning and construction" }, { "@value": "fid baudigital" }, { "@value": "nfdi4ing" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://xmlns.com/foaf/spec" }, "https://bioregistry.io/schema/#0000005": "familyName", "https://bioregistry.io/schema/#0000006": "http://xmlns.com/foaf/0.1/$1", "https://bioregistry.io/schema/#0000010": { "@id": "http://aber-owl.net/media/ontologies/FOAF/1/foaf.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:N6d9270660ec941fda4d2c371c151b789" }, "https://bioregistry.io/schema/#0000024": "http://xmlns.com/foaf/0.1/", "https://bioregistry.io/schema/#0000027": { "@id": "http://xmlns.com/foaf/0.1/familyName" }, "https://bioregistry.io/schema/#0000029": { "@value": "foaf" } }, { "@id": "_:N6d9270660ec941fda4d2c371c151b789", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Rafael Gonçalves" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "rafael.goncalves@stanford.edu" } }, { "@id": "https://registry.bio2kg.org/resource/nucleardb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "http://www.wikidata.org/entity/P696", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioportal.bioontology.org/ontologies/XAO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02026", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/mod", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://bioregistry.io/registry/sweet.propst", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Thickness", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/registry/sweet" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Property Space Thickness" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "space thickness" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/propSpaceThickness" }, "https://bioregistry.io/schema/#0000005": "AverageAnnualPrecipitation", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/propSpaceThickness/$1", "https://bioregistry.io/schema/#0000010": { "@id": "https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceThickness.ttl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "sopropst" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/propSpaceThickness/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/propSpaceThickness/AverageAnnualPrecipitation" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.propst" } }, { "@id": "https://registry.bio2kg.org/resource/myco.smeg", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/cellxgene.dataset", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Chan Zuckerberg CELLxGENE Dataset" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "cellxgene" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://cellxgene.cziscience.com" }, "https://bioregistry.io/schema/#0000005": "f72958f5-7f42-4ebb-98da-445b0c6de516", "https://bioregistry.io/schema/#0000006": "https://cellxgene.cziscience.com/e/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-8457-2836" }, "https://bioregistry.io/schema/#0000024": "https://cellxgene.cziscience.com/e/", "https://bioregistry.io/schema/#0000027": { "@id": "https://cellxgene.cziscience.com/e/f72958f5-7f42-4ebb-98da-445b0c6de516" }, "https://bioregistry.io/schema/#0000029": { "@value": "cellxgene.dataset" } }, { "@id": "https://orcid.org/0000-0002-8912-5699", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Jeffrey Wong" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "jeffvin.wong@utoronto.ca" } }, { "@id": "https://orcid.org/0000-0002-5159-414X", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Edison Ong" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "edong@umich.edu" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://bioregistry.io/collection/0000032", "@type": "https://bioregistry.io/schema/#0000003", "http://purl.org/dc/elements/1.1/contributor": { "@id": "_:N5d0bab55bd274ad38d2344a525ce9348" }, 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Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories.\n\nThe Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). 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WebsiteHomepageNotes
ExplorEnzhttps://www.enzyme-database.orgThis is the resource officially recommended by IUBMB
IUBMB (via by Queen Mary)https://iubmb.qmul.ac.uk/enzymeThis is a web-based version of the 1992 publication.
IntEnzhttps://www.ebi.ac.uk/intenzShutdown in 2024
ExPaSyhttps://enzyme.expasy.org
EnzymePortalhttps://www.ebi.ac.uk/enzymeportal
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It provides key information of MIPs based on their sequence and structures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "MIPModDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.bio2kg.org/resource/mipmod" }, { "@id": "https://registry.identifiers.org/registry/mipmod" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "structure" }, { "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://bioinfo.iitk.ac.in/MIPModDB" }, "https://bioregistry.io/schema/#0000005": "HOSAPI0399", "https://bioregistry.io/schema/#0000006": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1", "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-8527-5614" }, "https://bioregistry.io/schema/#0000024": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=", "https://bioregistry.io/schema/#0000027": { "@id": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=HOSAPI0399" }, "https://bioregistry.io/schema/#0000029": { "@value": "mipmod" } }, { "@id": "http://aber-owl.net/ontology/FaBiO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "http://www.wikidata.org/entity/P214", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://www.uniprot.org/database/DB-0095", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://registry.bio2kg.org/resource/kegg.disease", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "http://www.ontobee.org/ontology/UPHENO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://registry.identifiers.org/registry/hco", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://orcid.org/0000-0001-6875-5360", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "John Graybeal" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "jgraybeal@stanford.edu" } }, { "@id": "https://bioregistry.io/registry/saref.system", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.\n\n\n![SAREF4SYST overview](diagrams/overview.png)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF4SYST: an extension of SAREF for typology of systems and their inter-connections" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://terminology.tib.eu/ts/ontologies/s4syst" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4syst" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "iot" }, { "@value": "saref" }, { "@value": "nfdi4ing" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4syst/" }, "https://bioregistry.io/schema/#0000005": "Connection", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4syst/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "s4syst" }, 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"@id": "https://registry.identifiers.org/registry/obcs" }, { "@id": "https://registry.identifiers.org/registry/rbk" }, { "@id": "https://registry.identifiers.org/registry/metanetx.chemical" }, { "@id": "https://registry.identifiers.org/registry/morpheus" }, { "@id": "https://registry.identifiers.org/registry/unite" }, { "@id": "https://registry.identifiers.org/registry/corrdb" }, { "@id": "https://registry.identifiers.org/registry/panther.family" }, { "@id": "https://registry.identifiers.org/registry/fairsharing" }, { "@id": "https://registry.identifiers.org/registry/mmp.ref" }, { "@id": "https://registry.identifiers.org/registry/lincs.cell" }, { "@id": "https://registry.identifiers.org/registry/ricenetdb.gene" }, { "@id": "https://registry.identifiers.org/registry/subtilist" }, { "@id": "https://registry.identifiers.org/registry/uniprot.chain" }, { "@id": "https://registry.identifiers.org/registry/pdb-ccd" }, { "@id": "https://registry.identifiers.org/registry/civic.fid" }, { "@id": "https://registry.identifiers.org/registry/genpept" }, { "@id": "https://registry.identifiers.org/registry/spdx" }, { "@id": "https://registry.identifiers.org/registry/gmd.profile" }, { "@id": "https://registry.identifiers.org/registry/eco" }, { "@id": "https://registry.identifiers.org/registry/nextdb" }, { "@id": "https://registry.identifiers.org/registry/rrid" }, { "@id": "https://registry.identifiers.org/registry/pride" }, { "@id": "https://registry.identifiers.org/registry/phosphopoint.protein" }, { "@id": "https://registry.identifiers.org/registry/toxoplasma" }, { "@id": "https://registry.identifiers.org/registry/echobase" }, { "@id": "https://registry.identifiers.org/registry/kegg.genes" }, { "@id": "https://registry.identifiers.org/registry/mdm" }, { "@id": "https://registry.identifiers.org/registry/goa" }, { "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset" }, { "@id": "https://registry.identifiers.org/registry/ps" }, { "@id": "https://registry.identifiers.org/registry/gmd" }, { "@id": "https://registry.identifiers.org/registry/cheminf" }, { "@id": "https://registry.identifiers.org/registry/oryzabase.mutant" }, { "@id": "https://registry.identifiers.org/registry/doi" }, { "@id": "https://registry.identifiers.org/registry/worms" }, { "@id": "https://registry.identifiers.org/registry/funcbase.mouse" }, { "@id": "https://registry.identifiers.org/registry/yetfasco" }, { "@id": "https://registry.identifiers.org/registry/insdc.sra" }, { "@id": "https://registry.identifiers.org/registry/genatlas" }, { "@id": "https://registry.identifiers.org/registry/pigqtldb" }, { "@id": "https://registry.identifiers.org/registry/bioproject" }, { "@id": "https://registry.identifiers.org/registry/3dmet" }, { "@id": "https://registry.identifiers.org/registry/biocyc" }, { "@id": "https://registry.identifiers.org/registry/unipathway.compound" }, { "@id": "https://registry.identifiers.org/registry/clb" }, { "@id": "https://registry.identifiers.org/registry/vipr" }, { "@id": "https://registry.identifiers.org/registry/oryzabase.strain" }, { "@id": "https://registry.identifiers.org/registry/nuclearbd" }, { "@id": "https://registry.identifiers.org/registry/mirbase.mature" }, { "@id": "https://registry.identifiers.org/registry/ifloprop" }, { "@id": "https://registry.identifiers.org/registry/ga4ghdos" }, { "@id": "https://registry.identifiers.org/registry/sabiork.compound" }, { "@id": "https://registry.identifiers.org/registry/vfdb.genus" }, { "@id": "https://registry.identifiers.org/registry/aceview.worm" }, { "@id": "https://registry.identifiers.org/registry/mex" }, { "@id": "https://registry.identifiers.org/registry/refseq" }, { "@id": "https://registry.identifiers.org/registry/hco" }, { "@id": "https://registry.identifiers.org/registry/tritrypdb" }, { "@id": "https://registry.identifiers.org/registry/oridb.sacch" }, { "@id": "https://registry.identifiers.org/registry/ricenetdb.protein" }, { "@id": "https://registry.identifiers.org/registry/bgee.family" }, { "@id": "https://registry.identifiers.org/registry/iuphar.family" }, { "@id": "https://registry.identifiers.org/registry/gramene.taxonomy" }, { "@id": "https://registry.identifiers.org/registry/lincs.data" }, { "@id": "https://registry.identifiers.org/registry/cameo" }, { "@id": "https://registry.identifiers.org/registry/pmr.workspace" }, { "@id": "https://registry.identifiers.org/registry/disprot" }, { "@id": "https://registry.identifiers.org/registry/unimod" }, { "@id": "https://registry.identifiers.org/registry/biomodels.teddy" }, { "@id": "https://registry.identifiers.org/registry/hcvdb" }, { "@id": "https://registry.identifiers.org/registry/aspgd.protein" }, { "@id": "https://registry.identifiers.org/registry/ascl" }, { "@id": "https://registry.identifiers.org/registry/bigg.reaction" }, { "@id": "https://registry.identifiers.org/registry/protonet.cluster" }, { "@id": "https://registry.identifiers.org/registry/lrg" }, { "@id": "https://registry.identifiers.org/registry/trichdb" }, { "@id": "https://registry.identifiers.org/registry/pypi" }, { "@id": "https://registry.identifiers.org/registry/drsc" }, { "@id": "https://registry.identifiers.org/registry/mcro" }, { "@id": "https://registry.identifiers.org/registry/homd.taxon" }, { "@id": "https://registry.identifiers.org/registry/pdb" }, { "@id": "https://registry.identifiers.org/registry/oridb.schizo" }, { "@id": "https://registry.identifiers.org/registry/isbn" }, { "@id": "https://registry.identifiers.org/registry/paleodb" }, { "@id": "https://registry.identifiers.org/registry/iuphar.receptor" }, { "@id": "https://registry.identifiers.org/registry/mlc" }, { "@id": "https://registry.identifiers.org/registry/gnd" }, { "@id": "https://registry.identifiers.org/registry/unipathway.reaction" }, { "@id": "https://registry.identifiers.org/registry/ricegap" }, { "@id": "https://registry.identifiers.org/registry/moid" }, { "@id": "https://registry.identifiers.org/registry/multicellds.snapshot" }, { "@id": "https://registry.identifiers.org/registry/scop" }, { "@id": "https://registry.identifiers.org/registry/maxo" }, { "@id": "https://registry.identifiers.org/registry/cosmic" }, { "@id": "https://registry.identifiers.org/registry/mmrrc" }, { "@id": "https://registry.identifiers.org/registry/signaling-gateway" }, { "@id": "https://registry.identifiers.org/registry/mo" }, { "@id": "https://registry.identifiers.org/registry/imgt.hla" }, { "@id": "https://registry.identifiers.org/registry/rism" }, { "@id": "https://registry.identifiers.org/registry/odc.sci" }, { "@id": "https://registry.identifiers.org/registry/hamap" }, { "@id": "https://registry.identifiers.org/registry/ms" }, { "@id": "https://registry.identifiers.org/registry/bgee.organ" }, { "@id": "https://registry.identifiers.org/registry/prints" }, { "@id": "https://registry.identifiers.org/registry/hinv.locus" }, { "@id": 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{ "@id": "https://registry.identifiers.org/registry/snomedct" }, { "@id": "https://registry.identifiers.org/registry/nbn" }, { "@id": "https://registry.identifiers.org/registry/yid" }, { "@id": "https://registry.identifiers.org/registry/fungidb" }, { "@id": "https://registry.identifiers.org/registry/re3data" }, { "@id": "https://registry.identifiers.org/registry/neurondb" }, { "@id": "https://registry.identifiers.org/registry/pmap.cutdb" }, { "@id": "https://registry.identifiers.org/registry/kegg.genome" }, { "@id": "https://registry.identifiers.org/registry/genprop" }, { "@id": "https://registry.identifiers.org/registry/modeldb" }, { "@id": "https://registry.identifiers.org/registry/treefam" }, { "@id": "https://registry.identifiers.org/registry/molbase" }, { "@id": "https://registry.identifiers.org/registry/nmdc" }, { "@id": "https://registry.identifiers.org/registry/classyfire" }, { "@id": "https://registry.identifiers.org/registry/synapse" }, { "@id": 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All Exif 2.2 tags are defined as RDF properties, as well as several terms to help this schema.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Exif data description vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/exif" }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/exif" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "image" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.w3.org/2003/12/exif/" }, "https://bioregistry.io/schema/#0000005": "orientation", "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2003/12/exif/ns#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2003/12/exif/ns#", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.w3.org/2003/12/exif/ns#orientation" }, "https://bioregistry.io/schema/#0000029": { "@value": "exif" } }, { "@id": "https://bioregistry.io/registry/odm2.methodtype", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "A vocabulary for describing types of Methods associated with creating observations. MethodTypes correspond with ActionTypes in ODM2. An Action must be performed using an appropriate MethodType - e.g., a specimen collection Action should be associated with a specimen collection method.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Method Type Vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://biodivportal.gfbio.org/ontologies/METHODTYPE" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://vocabulary.odm2.org/methodtype/" }, "https://bioregistry.io/schema/#0000005": "cruise", "https://bioregistry.io/schema/#0000006": "http://vocabulary.odm2.org/methodtype/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:N9d7af16fe5364390a6a68b5ab4d15fe2" }, "https://bioregistry.io/schema/#0000024": "http://vocabulary.odm2.org/methodtype/", "https://bioregistry.io/schema/#0000027": { "@id": "http://vocabulary.odm2.org/methodtype/cruise" }, "https://bioregistry.io/schema/#0000029": { "@value": "odm2.methodtype" } }, { "@id": "_:N9d7af16fe5364390a6a68b5ab4d15fe2", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Jeff Horsburgh" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "jeff.horsburgh@usu.edu" } }, { "@id": "https://bioregistry.io/registry/hprd", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Human Protein Reference Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://www.re3data.org/repository/r3d100010978" }, { "@id": "http://www.pathguide.org/fullrecord.php?DBID=14" }, { "@id": "https://registry.bio2kg.org/resource/hprd" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD" }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc00103" }, { "@id": "https://registry.identifiers.org/registry/hprd" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "sequence" }, { "@value": "cdna/est" }, { "@value": "structure" }, { "@value": "health/disease" }, { "@value": "psi-mi" }, { "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.hprd.org/" }, "https://bioregistry.io/schema/#0000005": "00001", "https://bioregistry.io/schema/#0000006": "http://www.hprd.org/protein/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000024": "http://www.hprd.org/protein/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/04hqfvm50" }, "https://bioregistry.io/schema/#0000027": { "@id": "http://www.hprd.org/protein/00001" }, "https://bioregistry.io/schema/#0000029": { "@value": "hprd" } }, { "@id": "https://bioregistry.io/registry/gold.genome", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "GOLD genome" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.identifiers.org/registry/gold.genome" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi" }, "https://bioregistry.io/schema/#0000005": "Gi07796", "https://bioregistry.io/schema/#0000006": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1", "https://bioregistry.io/schema/#0000008": "^(Gi|Gc)\\d+$", "https://bioregistry.io/schema/#0000011": { "@id": "https://bioregistry.io/registry/gold" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000024": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/04xm1d337" }, "https://bioregistry.io/schema/#0000027": { "@id": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=Gi07796" }, "https://bioregistry.io/schema/#0000029": { "@value": "gold.genome" } }, { "@id": "https://registry.identifiers.org/registry/hgnc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://fairsharing.org/FAIRsharing.f2c119", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "http://www.wikidata.org/entity/P5437", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://togoid.dbcls.jp/#Mondo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/togoid" } }, { "@id": "https://registry.identifiers.org/registry/pharmgkb.drug", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/acl", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/lov" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://www.obofoundry.org/ontology/psdo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://registry.identifiers.org/registry/ec-code", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/osti.article", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-8741-7823" }, "http://purl.org/dc/terms/description": "The U.S. Department of Energy (DOE) Office of Scientific and Technical Information (OSTI) is the main metadata archive for permanent storage of registered [DOE DOI products](https://www.osti.gov/pids/doi-services/doe-data-id-service) (datasets, code, articles, patents, multimedia, etc.). When a DOI is minted a unique OSTI identifier for each record [{osti_id}](https://www.osti.gov/api/v1/docs#endpoints-singlerecord) is provided as the suffix in the DOI schema ([{site-specific-prefix}/{user-supplied-doi-infix}/{osti_id}](https://www.osti.gov/pids/doi-services)) and can be alternatively used as the main product identifier endpoint when [searching OSTI.GOV](https://www.osti.gov/search-tools) registry archive (see example below). OSTI.GOV is the primary registry and search tool for all Department of Energy (DOE) funded science, technology, and engineering research and development (R&D) results and the organizational hub for information about the DOE Office of Scientific and Technical Information (OSTI. **Data Product Type Example:** - https://www.osti.gov/biblio/1668761 - https://www.osti.gov/search/semantic:1668761 - https://www.osti.gov/dataexplorer/biblio/dataset/1668761 - https://www.osti.gov/api/v1/records/1668761 - https://doi.org/10.11578/1668761 **Other Core Product Registry Examples:** - Journal Articles: https://www.osti.gov/pages/biblio - Datasets: https://www.osti.gov/dataexplorer/biblio/dataset/ - Software: https://www.osti.gov/doecode/biblio/ - Patents: https://www.osti.gov/doepatents/biblio/ - Multimedia: https://www.osti.gov/sciencecinema/biblio/", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Office of Scientific and Technical Information (OSTI)" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "http://www.wikidata.org/entity/P3894" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "articles" }, { "@value": "article" }, { "@value": "publications" }, { "@value": "publication" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.osti.gov" }, "https://bioregistry.io/schema/#0000005": "1668761", "https://bioregistry.io/schema/#0000006": "https://www.osti.gov/biblio/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "https://www.osti.gov/biblio/", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.osti.gov/biblio/1668761" }, "https://bioregistry.io/schema/#0000029": { "@value": "osti.article" } }, { "@id": "https://bartoc.org/en/node/18659", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { "@id": "https://orcid.org/0000-0001-7666-5584", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Andy Green" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "a.green@herts.ac.uk" } }, { "@id": "https://registry.bio2kg.org/resource/homd.seq", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://bioregistry.io/registry/authorea.author", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "identifier for an author on the Authorea writing service", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Authorea author" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "http://www.wikidata.org/entity/P5039" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.authorea.com" }, "https://bioregistry.io/schema/#0000005": "229233", "https://bioregistry.io/schema/#0000006": "https://www.authorea.com/users/$1", "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://www.authorea.com/users/", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.authorea.com/users/229233" }, "https://bioregistry.io/schema/#0000029": { "@value": "authorea.author" } }, { "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://oid-base.com/get/2.16.840.1.113883.6.77", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/hl7" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc01858", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://bioregistry.io/registry/miriam.collection", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "MIRIAM Registry collection" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION" }, { "@id": "https://registry.identifiers.org/registry/miriam.collection" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "miriam" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.ebi.ac.uk/miriam/" }, "https://bioregistry.io/schema/#0000005": "00000008", "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/miriam/main/$1", "https://bioregistry.io/schema/#0000008": "^000\\d{5}$", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/miriam/main/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/02catss52" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://www.ebi.ac.uk/miriam/main/00000008" }, "https://bioregistry.io/schema/#0000029": { "@value": "miriam.collection" } }, { "@id": "https://bioregistry.io/registry/insdc", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Nucleotide Sequence Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://togoid.dbcls.jp/#Insdc" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC" }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02567" }, { "@id": "https://registry.bio2kg.org/resource/insdc" }, { "@id": "https://registry.identifiers.org/registry/insdc" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "portal" }, { "@value": "sequence" }, { "@value": "genome/gene" }, { "@value": "insdc" }, { "@value": "gene" }, { "@value": "dna" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.ebi.ac.uk/ena/" }, "https://bioregistry.io/schema/#0000005": "X58356", "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/data/view/$1", "https://bioregistry.io/schema/#0000008": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/data/view/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/02catss52" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://www.ebi.ac.uk/ena/data/view/X58356" }, "https://bioregistry.io/schema/#0000029": { "@value": "insdc" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://www.wikidata.org/entity/Q81661585", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://registry.identifiers.org/registry/ctd.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioportal.bioontology.org/ontologies/VSO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/registry/mfoem", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/jannahastings/emotion-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Emotion Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM" }, { "@id": "https://bioportal.bioontology.org/ontologies/MFOEM" }, { "@id": "http://www.ontobee.org/ontology/MFOEM" }, { "@id": "http://www.wikidata.org/entity/Q55118370" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem" }, { "@id": "https://www.obofoundry.org/ontology/mfoem" }, { "@id": "http://aber-owl.net/ontology/MFOEM" }, { "@id": "https://fairsharing.org/FAIRsharing.dx30m8" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "biomedical science" }, { "@value": "emotion process" }, { "@value": "ontology" }, { 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