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It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ISA-tools/stato" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "The Statistical Methods Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.identifiers.org/registry/stato" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/STATO" }, { "@id": "http://aber-owl.net/ontology/STATO" }, { "@id": "https://www.obofoundry.org/ontology/stato" }, { "@id": "https://terminology.tib.eu/ts/ontologies/stato" }, { "@id": "https://fairsharing.org/FAIRsharing.na5xp" }, { "@id": "https://bioportal.bioontology.org/ontologies/STATO" }, { "@id": "http://www.wikidata.org/entity/Q83428681" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato" }, { "@id": "http://www.ontobee.org/ontology/STATO" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "statistics" }, { "@value": "ess" }, { "@value": "study design" }, { "@value": "experimental measurement" }, { "@value": "omics" }, { "@value": "obo" }, { "@value": "data analysis" }, { "@value": "dataplant" }, { "@value": "graph" }, { "@value": "data visualization" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://stato-ontology.org/" }, "https://bioregistry.io/schema/#0000005": "0000288", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/STATO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/stato.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000018": [ { "@id": "https://bioregistry.io/registry/scdo" }, { "@id": "https://bioregistry.io/registry/psdo" }, { "@id": "https://bioregistry.io/registry/ontoavida" } ], "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-9853-5668" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/STATO_", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/02catss52" }, "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/STATO_0000288" }, "https://bioregistry.io/schema/#0000029": { "@value": "stato" } }, { "@id": "https://www.obofoundry.org/ontology/cdao", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/registry/gallont", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Ontology of plant gall phenotypes. 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Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Datanator Reaction" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://registry.identifiers.org/registry/datanator.reaction" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://icahn.mssm.edu/" }, "https://bioregistry.io/schema/#0000005": "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N", "https://bioregistry.io/schema/#0000006": "https://datanator.info/reaction/$1", "https://bioregistry.io/schema/#0000008": "^.*?--%3E.*?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://datanator.info/reaction/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/04a9tmd77" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://datanator.info/reaction/XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N" }, "https://bioregistry.io/schema/#0000029": { "@value": "datanator.reaction" } }, { "@id": "https://oid-base.com/get/2.16.840.1.113883.6.173", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/hl7" } }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { "@id": "https://bioregistry.io/registry/togoid", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/dbcls/togoid/togoid-config" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "TogoID Ontology" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://togoid.dbcls.jp/ontology" }, "https://bioregistry.io/schema/#0000005": "AffyProbeset", "https://bioregistry.io/schema/#0000006": "https://togoid.dbcls.jp/#$1", "https://bioregistry.io/schema/#0000010": { "@id": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-2391-0384" }, "https://bioregistry.io/schema/#0000024": "https://togoid.dbcls.jp/#", "https://bioregistry.io/schema/#0000027": { "@id": "https://togoid.dbcls.jp/#AffyProbeset" }, "https://bioregistry.io/schema/#0000029": { "@value": "togoid" } }, { "@id": "https://bioregistry.io/collection/0000009", "@type": "https://bioregistry.io/schema/#0000003", "http://purl.org/dc/elements/1.1/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/elements/1.1/description": { "@value": "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation" }, "http://purl.org/dc/terms/hasPart": [ { "@id": "https://bioregistry.io/registry/icd10" }, { "@id": "https://bioregistry.io/registry/dbsnp" }, { "@id": "https://bioregistry.io/registry/ucum" }, { "@id": "https://bioregistry.io/registry/dicom" }, { "@id": "https://bioregistry.io/registry/refseq" }, { "@id": "https://bioregistry.io/registry/hc.din" }, { "@id": "https://bioregistry.io/registry/nucc.taxonomy" }, { "@id": "https://bioregistry.io/registry/clinicaltrials" }, { "@id": "https://bioregistry.io/registry/pharmgkb.gene" }, { "@id": "https://bioregistry.io/registry/ndc" }, { "@id": "https://bioregistry.io/registry/omim" }, { "@id": "https://bioregistry.io/registry/hgnc" }, { "@id": "https://bioregistry.io/registry/cvx" }, { "@id": "https://bioregistry.io/registry/iso.3166" }, { "@id": "https://bioregistry.io/registry/cosmic.gene" }, { "@id": "https://bioregistry.io/registry/radlex" }, { "@id": "https://bioregistry.io/registry/loinc" }, { "@id": "https://bioregistry.io/registry/ensembl" }, { "@id": "https://bioregistry.io/registry/pubmed" }, { "@id": "https://bioregistry.io/registry/hc.npn" }, { "@id": "https://bioregistry.io/registry/so" }, { "@id": "https://bioregistry.io/registry/icf" }, { "@id": "https://bioregistry.io/registry/ncit" }, { "@id": "https://bioregistry.io/registry/cpt" }, { "@id": "https://bioregistry.io/registry/hl7.v2codesystem" }, { "@id": "https://bioregistry.io/registry/ndfrt" }, { "@id": "https://bioregistry.io/registry/icd9" }, { "@id": "https://bioregistry.io/registry/lrg" }, { "@id": "https://bioregistry.io/registry/ietf.language" }, { "@id": "https://bioregistry.io/registry/snomedct" }, { "@id": "https://bioregistry.io/registry/atcc" }, { "@id": "https://bioregistry.io/registry/rxnorm" }, { "@id": "https://bioregistry.io/registry/imgt.hla" }, { "@id": "https://bioregistry.io/registry/clinvar.variation" }, { "@id": "https://bioregistry.io/registry/dsm5" }, { "@id": "https://bioregistry.io/registry/hl7.v3codesystem" }, { "@id": "https://bioregistry.io/registry/unii" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "FHIR External Terminologies" } }, { "@id": "https://bioregistry.io/registry/ised", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Influenza Sequence and Epitope Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://registry.bio2kg.org/resource/ised" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://influenza.korea.ac.kr" }, "https://bioregistry.io/schema/#0000005": "AY209920", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { "@value": "ised" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/NBO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.bio2kg.org/resource/cryptodb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://www.obofoundry.org/ontology/obib", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/registry/ecocyc", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-6601-2165" }, "http://purl.org/dc/terms/description": "EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. 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Orloff" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "dorloff@ncmir.ucsd.edu" } }, { "@id": "https://bioregistry.io/registry/sioc.actions", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "An ontology of predicates for actions in SIOC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Semantically-Interlinked Online Communities Actions Ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://rdfs.org/sioc/spec/" }, "https://bioregistry.io/schema/#0000005": "DigitalArtifact", "https://bioregistry.io/schema/#0000006": "http://rdfs.org/sioc/actions#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://rdfs.org/sioc/actions#", "https://bioregistry.io/schema/#0000027": { "@id": "http://rdfs.org/sioc/actions#DigitalArtifact" }, "https://bioregistry.io/schema/#0000029": { "@value": "sioc.actions" } }, { "@id": "https://registry.bio2kg.org/resource/rgd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://orcid.org/0000-0001-8108-1698", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Chong Qin" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "qc@ouc.edu.cn" } }, { "@id": "https://bioregistry.io/registry/zfin", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "ZFIN serves as the zebrafish model organism database. 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When a DOI is minted a unique OSTI identifier for each record [{osti_id}](https://www.osti.gov/api/v1/docs#endpoints-singlerecord) is provided as the suffix in the DOI schema ([{site-specific-prefix}/{user-supplied-doi-infix}/{osti_id}](https://www.osti.gov/pids/doi-services)) and can be alternatively used as the main product identifier endpoint when [searching OSTI.GOV](https://www.osti.gov/search-tools) registry archive (see example below). OSTI.GOV is the primary registry and search tool for all Department of Energy (DOE) funded science, technology, and engineering research and development (R&D) results and the organizational hub for information about the DOE Office of Scientific and Technical Information (OSTI. **Data Product Type Example:** - https://www.osti.gov/biblio/1668761 - https://www.osti.gov/search/semantic:1668761 - https://www.osti.gov/dataexplorer/biblio/dataset/1668761 - https://www.osti.gov/api/v1/records/1668761 - https://doi.org/10.11578/1668761 **Other Core Product Registry Examples:** - Journal Articles: https://www.osti.gov/pages/biblio - Datasets: https://www.osti.gov/dataexplorer/biblio/dataset/ - Software: https://www.osti.gov/doecode/biblio/ - Patents: https://www.osti.gov/doepatents/biblio/ - Multimedia: https://www.osti.gov/sciencecinema/biblio/", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { 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"https://bioregistry.io/registry/emapa", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/obophenotype/developmental-mouse-anatomy-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Mouse Developmental Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://www.obofoundry.org/ontology/emapa" }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA" }, { "@id": "http://aber-owl.net/ontology/EMAPA" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa" }, { "@id": "https://bartoc.org/en/node/549" }, { "@id": "https://fairsharing.org/FAIRsharing.j0fa1d" }, { 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It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "ChemIDplus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "http://edamontology.org/data_2658" }, { "@id": "https://registry.identifiers.org/registry/chemidplus" }, { "@id": "https://registry.bio2kg.org/resource/chemidplus" }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc01837" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "chemical compound" }, { "@value": "image/movie" }, { "@value": "molecules" }, { "@value": "structure" }, { "@value": "chemical structure" }, { "@value": "3d structure" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp" }, "https://bioregistry.io/schema/#0000005": "57-27-2", "https://bioregistry.io/schema/#0000006": "https://chem.nlm.nih.gov/chemidplus/rn/$1", "https://bioregistry.io/schema/#0000008": "^\\d+\\-\\d+\\-\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "ChemIDplus" }, "https://bioregistry.io/schema/#0000024": "https://chem.nlm.nih.gov/chemidplus/rn/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/0060t0j89" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://chem.nlm.nih.gov/chemidplus/rn/57-27-2" }, "https://bioregistry.io/schema/#0000029": { "@value": "chemidplus" } }, { "@id": "https://bioregistry.io/registry/go.gpi", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": [ { "@id": "https://orcid.org/0000-0003-4423-4370" }, { "@id": "https://orcid.org/0000-0002-8719-7760" } ], "http://purl.org/dc/terms/description": "This describes the metadata schema for the Gene Product Information (GPI) files in the Gene Ontology, i.e., the local unique identifiers in this identifier space refer to the columns in GPI files.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Gene Product Information Schema" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id" }, "https://bioregistry.io/schema/#0000005": "db-object-id", "https://bioregistry.io/schema/#0000006": "http://geneontology.org/docs/gene-product-information-gpi-format/#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://geneontology.org/docs/gene-product-information-gpi-format/#", "https://bioregistry.io/schema/#0000027": { "@id": "http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id" }, "https://bioregistry.io/schema/#0000029": { "@value": "go.gpi" } }, { "@id": "http://www.ontobee.org/ontology/PCO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://bioportal.bioontology.org/ontologies/PROVO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "http://aber-owl.net/ontology/OHMI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://fairsharing.org/FAIRsharing.hw3bh2", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/lido.actor", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Indicates if the actor is an individual, a group of individuals, a family or an organization, such as a legal body, a corporation, or a firm.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "LIDO Terminology Actor Type" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://bartoc.org/en/node/18653" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://terminology.lido-schema.org/actor_type" }, "https://bioregistry.io/schema/#0000005": "group_of_persons", "https://bioregistry.io/schema/#0000006": "http://terminology.lido-schema.org/actor_type/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://terminology.lido-schema.org/actor_type/", "https://bioregistry.io/schema/#0000027": { "@id": "http://terminology.lido-schema.org/actor_type/group_of_persons" }, "https://bioregistry.io/schema/#0000029": { "@value": "lido.actor" } }, { "@id": "https://bioregistry.io/registry/kim.conditionsofaccess", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0001-5556-838X" }, "http://purl.org/dc/terms/description": "Identifiers describing conditions of access to an object (login) as defined by the [OER metadata group](https://oerworldmap.org/resource/urn:uuid:fd06253e-fe67-4910-b923-51db9d27e59f).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Conditions of Access" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "open educational resource" }, { "@value": "open educational resources" }, { "@value": 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"http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://registry.bio2kg.org/resource/redfly", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "http://www.ontobee.org/ontology/DINTO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://registry.identifiers.org/registry/psipar", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://www.wikidata.org/entity/Q81661586", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.identifiers.org/registry/mod", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://registry.identifiers.org/registry/cath.superfamily", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/astd", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Identifier of an object from the ASTD database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "ASTD" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.bio2kg.org/resource/astd" }, { "@id": "http://edamontology.org/data_2367" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "gene" }, { "@value": "alternative splicing" }, { "@value": "transcript" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.ebi.ac.uk/astd/" }, "https://bioregistry.io/schema/#0000005": "ENSG00000136147", "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/astd/geneview.html?acc=$1", "https://bioregistry.io/schema/#0000011": { "@id": "https://bioregistry.io/registry/ensembl" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/astd/geneview.html?acc=", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.ebi.ac.uk/astd/geneview.html?acc=ENSG00000136147" }, "https://bioregistry.io/schema/#0000029": { "@value": "astd" } }, { "@id": "https://bioregistry.io/registry/crop2ml", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "CropMRespository is a database of soil and crop biophysical process models.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "CropMRepository" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://registry.identifiers.org/registry/crop2ml" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.crop2ml.org" }, "https://bioregistry.io/schema/#0000005": "000000001", "https://bioregistry.io/schema/#0000006": "http://www.crop2ml.org/cropmdb/$1", "https://bioregistry.io/schema/#0000008": "^[0-9]{9}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://www.crop2ml.org/cropmdb/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/003vg9w96" }, "https://bioregistry.io/schema/#0000027": { "@id": "http://www.crop2ml.org/cropmdb/000000001" }, "https://bioregistry.io/schema/#0000029": { "@value": "crop2ml" } }, { "@id": "https://bioregistry.io/registry/hisco", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Starting in the 1950s the International Labour Office has developed an International Standard Classification of Occupations (isco) allowing classification of occupational activities worldwide. Naturally, this system is not intended to deal with historical information. In recent years, a group of historians and sociologists have started to build upon the 1968 version of isco to create a classification scheme for occupational titles in the 19th and early 20th centuries, called hisco (...). It is tailored to cope with historical changes in the production process, and allows storage of information on product and status that could not be accommodated in isco. Large historical databases from which the hisco-data are taken and the international association of historians working on censuses have already agreed to adopt it, an many individual researchers are expected to do so as well.\n\nAltogether, the HISCO scheme was originally based on the coding of the 1,000 most frequent male and female occupational titles in datasets from eight different countries: Belgium, Britain, Canada, France, Germany, the Netherlands, Norway and Sweden. The occupational data which were employed to develop the scheme span the period 1690-1970, but are mostly from the nineteenth century. They contain titles declared by or recorded for people of all ages in parish and civil registration documents. The data used to create HISCO encompass the largest country in western Europe, the world’s first industrial nation, the two most influential of the Scandinavian territories, and a newly-settled region of French-Canada. This, and an emphasis on variations within economies in sampling design, ensures that they provide a good mix of agricultural, industrial and commercial activities, of old and new technologies, of traditional and modern forms of organization. Moreover, the inclusion of two French-speaking populations, and a further region in which the official language was French, provides an effective test of the HISCO scheme’s sensitivity to the relationship between language and meaning. 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"http://xmlns.com/foaf/0.1/mbox": { "@value": "bmeldal@ebi.ac.uk" } }, { "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { "@id": "https://bioregistry.io/registry/planp", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/obophenotype/planarian-phenotype-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Planarian Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioportal.bioontology.org/ontologies/PLANP" }, { "@id": "http://www.wikidata.org/entity/Q81661782" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp" }, { "@id": "https://www.obofoundry.org/ontology/planp" }, { "@id": "http://www.ontobee.org/ontology/PLANP" }, { "@id": "http://aber-owl.net/ontology/PLANP" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/obophenotype/planarian-phenotype-ontology" }, "https://bioregistry.io/schema/#0000005": "0000001", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLANP_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/planp.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000017": [ { "@id": "https://bioregistry.io/registry/ro" }, { "@id": "https://bioregistry.io/registry/plana" }, { "@id": "https://bioregistry.io/registry/go" }, { "@id": "https://bioregistry.io/registry/pato" } ], "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-3528-5267" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLANP_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/PLANP_0000001" }, "https://bioregistry.io/schema/#0000029": { "@value": "planp" } }, { "@id": "https://orcid.org/0000-0002-7981-8504", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Sheeba Samuel" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "sheeba.samuel@uni-jena.de" } }, { "@id": "https://bioregistry.io/registry/pharmgkb.variant", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "SNPs and other variants that can be mapped to dbSNP.", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/registry/pharmgkb" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "PharmGKB Variant" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.VARIANT" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "genetic variant" }, { "@value": "snp" }, { "@value": "genetic variation" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.pharmgkb.org" }, "https://bioregistry.io/schema/#0000005": "PA166156302", "https://bioregistry.io/schema/#0000006": "https://www.pharmgkb.org/variant/$1", "https://bioregistry.io/schema/#0000008": "^PA\\d+$", "https://bioregistry.io/schema/#0000010": { "@id": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-5527-6475" }, "https://bioregistry.io/schema/#0000024": "https://www.pharmgkb.org/variant/", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.pharmgkb.org/variant/PA166156302" }, "https://bioregistry.io/schema/#0000029": { "@value": "pharmgkb.variant" } }, { "@id": "https://orcid.org/0000-0001-5844-2731", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Christopher M. Overall" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "chris.overall@ubc.ca" } }, { "@id": "https://bioregistry.io/registry/matrixdb.association", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "MatrixDB Association" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association" }, { "@id": "https://registry.identifiers.org/registry/matrixdb.association" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://matrixdb.univ-lyon1.fr/" }, "https://bioregistry.io/schema/#0000005": "P00747__P07355", "https://bioregistry.io/schema/#0000006": "https://matrixdb.univ-lyon1.fr/association/$1", "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://matrixdb.univ-lyon1.fr/association/", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/0019x5d05" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://matrixdb.univ-lyon1.fr/association/P00747__P07355" }, "https://bioregistry.io/schema/#0000029": { "@value": "matrixdb.association" } }, { "@id": "http://aber-owl.net/ontology/ICF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "http://edamontology.org/data_2386", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/dicob", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://aber-owl.net/ontology/MESH", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02041", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "http://aber-owl.net/ontology/SIO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://orcid.org/0000-0002-2340-5356", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Troy Pells" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "troy_pells@yahoo.ca" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.bio2kg.org/resource/wormpep", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://registry.identifiers.org/registry/igsn", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://registry.identifiers.org/registry/pharmgkb.disease", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://orcid.org/0000-0001-6603-5060", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Zhang Zhang" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "zhangzhang@big.ac.cn" } }, { "@id": "https://registry.bio2kg.org/resource/fsnp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://togoid.dbcls.jp/#UniprotIsoform", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/togoid" } }, { "@id": "https://registry.identifiers.org/registry/dragondb.dna", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/saref.ehaw", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both: - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e. - Use case 1 ?elderly at home monitoring and support?, - Use case 2 ?monitoring and support of healthy lifestyles for citizens?, - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification. SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology. ![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg) For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). For embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e. - Use case 1 “elderly at home monitoring and support”, - Use case 2 “monitoring and support of healthy lifestyles for citizens”, - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "http://aber-owl.net/ontology/S4EHAW" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4ehaw" }, { "@id": "https://terminology.tib.eu/ts/ontologies/s4ehaw" }, { "@id": "https://bioportal.bioontology.org/ontologies/S4EHAW" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "iot" }, { "@value": "engineering" }, { "@value": "ontology" }, { "@value": "nfdi4ing" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4ehaw/" }, "https://bioregistry.io/schema/#0000005": "Activity", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4ehaw/$1", "https://bioregistry.io/schema/#0000010": { "@id": "http://aber-owl.net/media/ontologies/S4EHAW/1/s4ehaw.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:Nd94b0933cc844e31a78330790816ff0b" }, "https://bioregistry.io/schema/#0000023": { "@value": "s4ehaw" }, "https://bioregistry.io/schema/#0000024": "https://saref.etsi.org/saref4ehaw/", "https://bioregistry.io/schema/#0000027": { "@id": "https://saref.etsi.org/saref4ehaw/Activity" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.ehaw" } }, { "@id": "_:Nd94b0933cc844e31a78330790816ff0b", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "LOV Migration" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "mohamed-el-amine.boukerfa@inrae.fr" } }, { "@id": "https://bioregistry.io/registry/ictv", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Ontology representation of the [International Committee on Taxonomy of Viruses (ICTV)](https://ictv.global/) for the [EVORA project](https://evora-project.eu/)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/EVORA-project/ictv-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "International Committee on Taxonomy of Viruses Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bartoc.org/en/node/507" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/ictv" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/EVORA-project/ictv-ontology" }, "https://bioregistry.io/schema/#0000005": "ICTV19990991", "https://bioregistry.io/schema/#0000006": "http://ictv.global/id/MSL40/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://ictv.global/id/MSL40/", "https://bioregistry.io/schema/#0000027": { "@id": "http://ictv.global/id/MSL40/ICTV19990991" }, "https://bioregistry.io/schema/#0000029": { "@value": "ictv" } }, { "@id": "http://aber-owl.net/ontology/dcterms", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://togoid.dbcls.jp/#UniprotProteome", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/togoid" } }, { "@id": "https://www.obofoundry.org/ontology/ontoneo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/registry/saref.city", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "This ontology extends the SAREF ontology for the Smart City domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Smart City domain.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF extension for Smart City" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://terminology.tib.eu/ts/ontologies/s4city" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4city" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "civil engineering" }, { "@value": "fid move" }, { "@value": "computer science" }, { "@value": "traffic engineering" }, { "@value": "digital planning and construction" }, { "@value": "government" }, { "@value": "iot" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4city/" }, "https://bioregistry.io/schema/#0000005": "AccessibilityConcept", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4city/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "s4city" }, "https://bioregistry.io/schema/#0000024": "https://saref.etsi.org/saref4city/", "https://bioregistry.io/schema/#0000027": { "@id": "https://saref.etsi.org/saref4city/AccessibilityConcept" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.city" } }, { "@id": "https://bioregistry.io/registry/tib.mdv", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "A version of the Materials Data Vocabulary structured as Simple Knowledge Organization System (SKOS). The XML was originally created by the TemaTres software. This vocabulary describes the applicability to material science of records in the NIST Materials Resource Registry (NMRR - https://materials.registry.nist.gov/). The NMRR allows for the registration of materials resources, bridging the gap between existing resources and the end users. The NMRR functions as a node in a federated system, making the registered information available for research to the materials community. This is being developed at the National Institute of Standards and Technology and is made available to solicit comments from the Material Science community. (An Excel version of the file is also included in the distributions for ease of use.) Please cite this resource as: Medina-Smith, Andrea; Becker, Chandler (2017), Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary , National Institute of Standards and Technology, https://doi.org/10.18434/T4/1435037", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://terminology.tib.eu/ts/ontologies/mdv" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "nfdi4ing" }, { "@value": "material science" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://data.nist.gov/od/id/67C783D4BA814C8EE05324570681708A1899" }, "https://bioregistry.io/schema/#0000005": "953", "https://bioregistry.io/schema/#0000006": "https://data.nist.gov/od/dm/nmrr/vocab/?tema=$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://data.nist.gov/od/dm/nmrr/vocab/?tema=", "https://bioregistry.io/schema/#0000027": { "@id": "https://data.nist.gov/od/dm/nmrr/vocab/?tema=953" }, "https://bioregistry.io/schema/#0000029": { "@value": "tib.mdv" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://www.ontobee.org/ontology/EMAPA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/world2dpage", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "A public repository, standards compliant, for proteomics image data published in the literature. 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In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Viral Bioinformatics Resource Center" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc" }, { "@id": "https://registry.identifiers.org/registry/vbrc" }, { "@id": "https://registry.bio2kg.org/resource/vbrc" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://vbrc.org/" }, "https://bioregistry.io/schema/#0000005": "35742", "https://bioregistry.io/schema/#0000006": "http://vbrc.org/gene_detail.asp?gene_id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000024": "http://vbrc.org/gene_detail.asp?gene_id=", "https://bioregistry.io/schema/#0000027": { "@id": "http://vbrc.org/gene_detail.asp?gene_id=35742" }, "https://bioregistry.io/schema/#0000029": { "@value": "vbrc" } }, { "@id": "http://www.wikidata.org/entity/P8915", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioregistry.io/registry/hoso", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-3336-2476" }, "http://purl.org/dc/terms/description": "HOSO is an ontology of informational entities and processes related to healthcare organizations and services.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/OpenLHS/HOSO" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Healthcare Organizations and Services Ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://openlhs.github.io/HOSO/" }, "https://bioregistry.io/schema/#0000005": "0000001", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-3336-2476" }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000029": { "@value": "hoso" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioportal.bioontology.org/ontologies/SO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioportal.bioontology.org/ontologies/FLOPO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/registry/lbctr", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Lebanon Clinical Trials Registry" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://lbctr.moph.gov.lb/" }, "https://bioregistry.io/schema/#0000005": "LBCTR2023015204", "https://bioregistry.io/schema/#0000008": "^LBCTR\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { "@value": "lbctr" } }, { "@id": "https://orcid.org/0000-0003-2826-6444", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Amos Bairoch" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "Amos.Bairoch@sib.swiss" } }, { "@id": "https://www.obofoundry.org/ontology/ogsf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/collection/0000010", "@type": "https://bioregistry.io/schema/#0000003", "http://purl.org/dc/elements/1.1/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/elements/1.1/description": { "@value": "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)).\n\nWhile it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" }, "http://purl.org/dc/terms/hasPart": [ { "@id": "https://bioregistry.io/registry/bto" }, { "@id": "https://bioregistry.io/registry/rhea" }, { "@id": "https://bioregistry.io/registry/zfin" }, { "@id": "https://bioregistry.io/registry/panther.pathway" }, { "@id": "https://bioregistry.io/registry/pmc" }, { "@id": "https://bioregistry.io/registry/ucsc" }, { "@id": "https://bioregistry.io/registry/civic.vid" }, { "@id": "https://bioregistry.io/registry/civic.tid" }, { "@id": "https://bioregistry.io/registry/pdb" }, { "@id": "https://bioregistry.io/registry/civic.sid" }, { "@id": "https://bioregistry.io/registry/panther.node" }, { "@id": "https://bioregistry.io/registry/civic.aid" }, { "@id": "https://bioregistry.io/registry/ena.embl" }, { "@id": "https://bioregistry.io/registry/brenda.ligand" }, { "@id": "https://bioregistry.io/registry/go" }, { "@id": "https://bioregistry.io/registry/interpro" }, { "@id": "https://bioregistry.io/registry/reactome" }, { "@id": "https://bioregistry.io/registry/chembl" }, { "@id": "https://bioregistry.io/registry/civic.did" }, { "@id": "https://bioregistry.io/registry/gbif" }, { "@id": "https://bioregistry.io/registry/chebi" }, { "@id": "https://bioregistry.io/registry/civic.gid" }, { "@id": "https://bioregistry.io/registry/pharmgkb.drug" }, { "@id": "https://bioregistry.io/registry/hgnc" }, { "@id": "https://bioregistry.io/registry/pharmgkb.gene" }, { "@id": "https://bioregistry.io/registry/uniprot" }, { "@id": "https://bioregistry.io/registry/panther.pthcmp" }, { "@id": "https://bioregistry.io/registry/ecocyc" }, { "@id": "https://bioregistry.io/registry/pharmgkb.disease" }, { "@id": "https://bioregistry.io/registry/eupath" }, { "@id": "https://bioregistry.io/registry/brenda.ligandgroup" }, { "@id": "https://bioregistry.io/registry/gnomad" }, { "@id": "https://bioregistry.io/registry/ensembl" }, { "@id": "https://bioregistry.io/registry/pharmgkb.pathways" }, { "@id": "https://bioregistry.io/registry/orphanet.ordo" }, { "@id": "https://bioregistry.io/registry/rgd" }, { "@id": "https://bioregistry.io/registry/flybase" }, { "@id": "https://bioregistry.io/registry/brenda" }, { "@id": "https://bioregistry.io/registry/bacdive" }, { "@id": "https://bioregistry.io/registry/mgi" }, { "@id": "https://bioregistry.io/registry/orpha" }, { "@id": "https://bioregistry.io/registry/sgd" }, { "@id": "https://bioregistry.io/registry/pombase" }, { "@id": "https://bioregistry.io/registry/wormbase" }, { "@id": "https://bioregistry.io/registry/px" }, { "@id": "https://bioregistry.io/registry/civic.eid" }, { "@id": "https://bioregistry.io/registry/agrkb" }, { "@id": "https://bioregistry.io/registry/panther.family" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Global Biodata Coalition - Global Core Biodata Resources" } }, { "@id": "https://bioregistry.io/registry/ogms", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/OGMS/ogms" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Ontology for General Medical Science" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://www.obofoundry.org/ontology/ogms" }, { "@id": "https://bioportal.bioontology.org/ontologies/OGMS" }, { "@id": "http://aber-owl.net/ontology/OGMS" }, { "@id": "http://www.wikidata.org/entity/Q55118512" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS" }, { "@id": "https://fairsharing.org/FAIRsharing.rvz0m9" }, { "@id": "http://www.ontobee.org/ontology/OGMS" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "cancer" }, { "@value": "disease phenotype" }, { "@value": "biomedical science" }, { "@value": "disease" }, { "@value": "obo" }, { "@value": "diagnosis" }, { "@value": "medicine" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://github.com/OGMS/ogms" }, "https://bioregistry.io/schema/#0000005": "0000031", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGMS_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/ogms.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000018": [ { "@id": "https://bioregistry.io/registry/scdo" }, { "@id": "https://bioregistry.io/registry/labo" } ], "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-1346-1327" }, "https://bioregistry.io/schema/#0000023": { "@value": "ogms/OMRE" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGMS_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/OGMS_0000031" }, "https://bioregistry.io/schema/#0000029": { "@value": "ogms" } }, { "@id": "https://bartoc.org/en/node/400", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { "@id": "https://bioportal.bioontology.org/ontologies/DDI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://oid-base.com/get/2.16.840.1.113883.6.209", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/hl7" } }, { "@id": "http://aber-owl.net/ontology/MPIO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://orcid.org/0000-0002-0358-0130", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Martin Ramirez" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "ramirez@macn.gov.ar" } }, { "@id": "https://bioportal.bioontology.org/ontologies/CVDO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/registry/ddi.softwarepackage", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Indicates the statistical software package used in the production/processing/dissemination of the data. Data collection software is not covered in this list.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Software Package" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage" }, "https://bioregistry.io/schema/#0000005": "AcaStat", "https://bioregistry.io/schema/#0000006": "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/015em2733" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_AcaStat" }, "https://bioregistry.io/schema/#0000029": { "@value": "ddi.softwarepackage" } }, { "@id": "https://bioregistry.io/registry/vuid", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Veterans Health Administration (VHA) unique identifier" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.va.gov/health" }, "https://bioregistry.io/schema/#0000005": "4007166", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { "@value": "vuid" } }, { "@id": "https://bioregistry.io/registry/cabri", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. 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" }, "http://purl.org/dc/terms/hasPart": [ { "@id": "https://bioregistry.io/registry/fabio" }, { "@id": "https://bioregistry.io/registry/foaf" }, { "@id": "https://bioregistry.io/registry/cidoc.crm" }, { "@id": "https://bioregistry.io/registry/modsci" }, { "@id": "https://bioregistry.io/registry/gesah" }, { "@id": "https://bioregistry.io/registry/dcterms" }, { "@id": "https://bioregistry.io/registry/vivo" }, { "@id": "https://bioregistry.io/registry/okn.sd" }, { "@id": "https://bioregistry.io/registry/ohdab" }, { "@id": "https://bioregistry.io/registry/dbo" }, { "@id": "https://bioregistry.io/registry/iao" }, { "@id": "https://bioregistry.io/registry/bot" }, { "@id": "https://bioregistry.io/registry/lido" }, { "@id": "https://bioregistry.io/registry/geonames" }, { "@id": "https://bioregistry.io/registry/wikidata" }, { "@id": "https://bioregistry.io/registry/viaf" }, { "@id": "https://bioregistry.io/registry/skos" }, { "@id": "https://bioregistry.io/registry/doap" }, { "@id": "https://bioregistry.io/registry/gnd" }, { "@id": "https://bioregistry.io/registry/bfo" }, { "@id": "https://bioregistry.io/registry/iconclass" }, { "@id": "https://bioregistry.io/registry/vcard" }, { "@id": "https://bioregistry.io/registry/dcat" }, { "@id": "https://bioregistry.io/registry/nfdi4culture.cto" }, { "@id": "https://bioregistry.io/registry/obi" }, { "@id": "https://bioregistry.io/registry/swo" }, { "@id": "https://bioregistry.io/registry/org" }, { "@id": "https://bioregistry.io/registry/premis" }, { "@id": "https://bioregistry.io/registry/schema" }, { "@id": "https://bioregistry.io/registry/frapo" } ], "http://usefulinc.com/ns/doap#maintainer": { "@id": "https://orcid.org/0000-0002-1648-1684" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "NFDI4Culture Collection" }, "http://xmlns.com/foaf/0.1/logo": { "@type": "http://www.w3.org/2001/XMLSchema#anyURI", "@value": "https://www.nfdi.de/wp-content/uploads/2021/05/NFDI4C_Logo.png" } }, { "@id": "_:N49f0a1bcdcb54d7685125e7d04a4f6b0", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "NFDI Section Metadata WG Ontology Harmonization and Mapping" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/sms", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://bioregistry.io/registry/chembl.mechanism", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "This controlled vocabulary contains terms to describe the mechanism of action for a chemical-target interaction. The terms can be retrieved from ACTION_TYPE table in ChEMBL's SQL dump and are used to annotate the DRUG_MECHANISM table. Because these aren't really identifiers, they are transformed by lowercasing and replacing spaces with dashes to form 'identifiers'. 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All Exif 2.2 tags are defined as RDF properties, as well as several terms to help this schema.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Exif data description vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/exif" }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/exif" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "image" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.w3.org/2003/12/exif/" }, "https://bioregistry.io/schema/#0000005": "orientation", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { "@value": "exif" } }, { "@id": "https://bioregistry.io/registry/ivdb", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. 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English Heritage takes a leading role in setting standards for recording the built and buried heritage. By setting standards that can be adopted by everyone, we can make sure that all records are consistent. In other words, if everyone uses the same words to describe the same monument, archaeological object, building material, etc, then anyone using this common language can easily index, retrieve and understand these records. With this aim in mind, English Heritage is continually developing new thesauri to provide structure and guidelines for the standardisation of terms to be used when creating new records of the past. Now, in our drive to disseminate these standards and promote their wider use, we are making available seven separate online thesauri. A tailor-made suite of programs has been developed, which uses a database to create a series of web pages for any chosen thesaurus. These can be easily accessed using a frames-capable browser and regularly updated as new terms are submitted and approved by our Data Standards Unit.\n\n National cultural heritage thesauri and vocabularies have acted as standards for use by both national organizations and local authority Historic Environment Records but until now have lacked the persistent Linked Open Data (LOD) URIs that would allow them to act as vocabulary hubs for the Web of Data. The AHRC funded SENESCHAL project aims to make such vocabularies available online as Semantic Web resources. SENESCHAL will start with major vocabularies as exemplars and project partners will continue to make other vocabularies available. Other organizations are welcome to make use of the data and services which will be open licensed.\n\n RESTful web services will be developed for the project to make the vocabulary resources programmatically accessible and searchable. 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The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "NFDI4Culture Metadata API" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "digital humanities" }, { "@value": "organization" }, { "@value": "generic" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://nfdi4culture.de/id" }, "https://bioregistry.io/schema/#0000005": "E4330", "https://bioregistry.io/schema/#0000006": "https://nfdi4culture.de/id/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://nfdi4culture.de/id/", 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ModSci powers two projects for semantically representing scholarly information: Open Research Knowledge Graph (for the categorization of research papers) and OpenResearch.org (for the categorization of the information about scientific events, research projects, scientific papers, publishers, and journals).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Modern Science Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://terminology.tib.eu/ts/ontologies/modsci" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/modsci" }, { "@id": "http://aber-owl.net/ontology/ModSci" }, { "@id": "https://bioportal.bioontology.org/ontologies/MODSCI" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "society" }, { "@value": "ontology" }, { "@value": "academy" }, { "@value": "nfdi4ing" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html" }, "https://bioregistry.io/schema/#0000005": "AcidbaseChemistry", "https://bioregistry.io/schema/#0000006": "https://w3id.org/skgo/modsci#$1", "https://bioregistry.io/schema/#0000010": { "@id": "http://aber-owl.net/media/ontologies/ModSci/2/modsci.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:N91c080ce19ee409cb9f79607e4da674c" }, "https://bioregistry.io/schema/#0000024": "https://w3id.org/skgo/modsci#", "https://bioregistry.io/schema/#0000027": { "@id": "https://w3id.org/skgo/modsci#AcidbaseChemistry" }, "https://bioregistry.io/schema/#0000029": { "@value": "modsci" } }, { "@id": "_:N91c080ce19ee409cb9f79607e4da674c", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SaidFathalla" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "sm_fathalla@yahoo.com" } }, { "@id": "https://orcid.org/0000-0001-5208-3432", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Nicole Vasilevsky" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "vasilevs@ohsu.edu" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://registry.bio2kg.org/resource/pombase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bartoc.org/en/node/1143", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/schema", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/zazuko" } }, { "@id": "http://aber-owl.net/ontology/HSAPDV", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://orcid.org/0000-0002-7729-8453", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Edgar Wingender" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "edgar.wingender@edgar-wingender.de" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "http://aber-owl.net/ontology/PDRO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/registry/mixs", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": [ { "@id": "https://orcid.org/0000-0001-9076-6066" }, { "@id": "https://orcid.org/0000-0002-1335-0881" }, { "@id": "https://orcid.org/0000-0002-6601-2165" }, { "@id": "https://orcid.org/0000-0002-8741-7823" } ], "http://purl.org/dc/terms/description": "The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Minimum Information about any (x) Sequence" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://www.ebi.ac.uk/ols4/ontologies/gscmixs" }, { "@id": "http://aber-owl.net/ontology/MIXS" }, { "@id": "https://bioportal.bioontology.org/ontologies/MIXS" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://w3id.org/mixs" }, "https://bioregistry.io/schema/#0000005": "0001056", "https://bioregistry.io/schema/#0000006": "https://w3id.org/mixs/$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "https://w3id.org/mixs/mixs.owl.ttl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-9076-6066" }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "https://w3id.org/mixs/", "https://bioregistry.io/schema/#0000027": { "@id": "https://w3id.org/mixs/0001056" }, "https://bioregistry.io/schema/#0000029": { "@value": "mixs" } }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/sd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/lov" } }, { "@id": "https://bioregistry.io/registry/sweet.phhe", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Heliosphere", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Phenomena Heliosphere" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "phenomena" }, { "@value": "heliosphere" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/phenHelio/" }, "https://bioregistry.io/schema/#0000005": "Airglow", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/phenHelio/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "sophhe" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/phenHelio/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/phenHelio/Airglow" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.phhe" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc00545", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://registry.identifiers.org/registry/merops.inhibitor", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://www.wikidata.org/entity/Q81661797", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "http://aber-owl.net/ontology/EMAPA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bartoc.org/en/node/20832", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { "@id": "https://bioregistry.io/registry/goldbook", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Compendium is popularly referred to as the \"Gold Book\", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC \"Colour Books\" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.\n\nTerminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry.\n\nThe API can be accessed [here](https://goldbook.iupac.org/pages/api)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "IUPAC Gold Book Compendium of Chemical Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bartoc.org/en/node/1884" }, { "@id": "http://www.wikidata.org/entity/Q902163" }, { "@id": "http://www.wikidata.org/entity/P4732" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://goldbook.iupac.org" }, "https://bioregistry.io/schema/#0000005": "G02681", "https://bioregistry.io/schema/#0000006": "https://goldbook.iupac.org/terms/view/$1", "https://bioregistry.io/schema/#0000008": "^(\\wT?)?\\d{5}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-0703-7776" }, "https://bioregistry.io/schema/#0000024": "https://goldbook.iupac.org/terms/view/", "https://bioregistry.io/schema/#0000027": { "@id": "https://goldbook.iupac.org/terms/view/G02681" }, "https://bioregistry.io/schema/#0000029": { "@value": "goldbook" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://registry.bio2kg.org/resource/pubchem.compound", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://oid-base.com/get/1.0.639.3", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/hl7" } }, { "@id": "http://www.wikidata.org/entity/P8978", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioregistry.io/registry/medgen.cid", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "This vocabulary is used internally inside MedGen to assign temporary identifiers to terms that will later get put in UMLS. Mappings between MedGen, MedGen CIDs, and UMLS can be found [here](https://ftp.ncbi.nlm.nih.gov/pub/medgen/MedGenIDMappings.txt.gz).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "MedGen Concept Unique ID" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.ncbi.nlm.nih.gov/medgen" }, "https://bioregistry.io/schema/#0000005": "CN970821", "https://bioregistry.io/schema/#0000008": "^CN\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-5493-2602" }, "https://bioregistry.io/schema/#0000029": { "@value": "medgen.cid" } }, { "@id": "https://bioregistry.io/registry/dashr.rna", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Database of small human noncoding RNAs" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR" }, { "@id": "https://registry.identifiers.org/registry/dashr" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://lisanwanglab.org/DASHR/" }, "https://bioregistry.io/schema/#0000005": "hsa-mir-200a", "https://bioregistry.io/schema/#0000006": "http://lisanwanglab.org/DASHR/entry/$1", "https://bioregistry.io/schema/#0000008": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "dashr" }, "https://bioregistry.io/schema/#0000024": "http://lisanwanglab.org/DASHR/entry/", "https://bioregistry.io/schema/#0000027": { "@id": "http://lisanwanglab.org/DASHR/entry/hsa-mir-200a" }, "https://bioregistry.io/schema/#0000029": { "@value": "dashr.rna" } }, { "@id": "https://bioregistry.io/registry/oryzabase.gene", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. 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