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In particular the following ones have been considered in the project:\n- [Freesound](https://freesound.org/), a collaborative database of Creative Commons Licensed sounds;\n- [Jamendo](https://www.jamendo.com/), a music website for independent artists;\n- [Europeana Sounds](https://www.eusounds.eu/), a European project collecting and sharing data from several archives of sounds and sound-related media;\n- [Internet Archive](https://archive.org/), a non-profit library of millions of freely accessible media contents.\n\n### The base model\n
![A diagram showing the entities Work, Expression, Manifestation, Item](./img/FRBR-Group-1-entities-and-basic-relations.svg.png)
\nThe Audio Commons ontology is based on [Functional Requirements for Bibliographic Records (FRBR)](https://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records), a bibliographic model designed for user tasks of retrieval and access in online library catalogues and bibliographic databases. FRBR distinguish the products of intellectual or artistic endeavor in four main classes: work, expression, manifestation, item. It is available as RDF vocabulary at https://vocab.org/frbr/core. For further information on FRBR, check the [standard](https://repository.ifla.org/handle/123456789/811).\n\nAnother important model related to audio is the [Music Ontology](http://musicontology.com/), which is also based on the FRBR model. Our ontology is more generic than the Music Ontology but is interoperable with it to support the specificities of music-related audio content.\n\nThe Audio Commons ontology works also in conjunction with\n- [Dublin Core](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/) for basic metadata,\n- [EBU Core](https://www.ebu.ch/metadata/ontologies/ebucore/) for technical properties of audio files,\n- [SKOS](https://www.w3.org/TR/skos-primer/) to support taxonomic classifications,\n- [Creative Commons Licensing schema](https://creativecommons.org/ns) to represent media licensing,\n- [Event ontology](http://motools.sf.net/event/event.html) for the formalisation of events,\n- [Audio Features Ontology](https://w3id.org/afo/onto/) for the characterisation of audio features.\n\n### Ontology overview\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Skeleton.png)\n\nThe figure above shows the most general classes and properties of the Audio Commons ontology and their relationship with classes of the FRBR and the Music Ontology:\n- **`ac:AudioExpression`**, the specific intellectual or artistic form that a work takes each time it is _realised_, in the audio domain, e.g., the recording or synthesis of music or sounds;\n- **`ac:AudioManifestation`**, the physical embodiment of an audio expression, e.g., a musical track, a sound, an album; \n- **`ac:AudioItem`**, a single exemplar of an audio manifestation, e.g., a copy of a CD or a specific media file.\n\nThe FRBR class Work, representing a distinct intellectual or artistic creation on a more conceptual level, has not been specialised in Audio Commons.\n\nThe Audio Commons ontology provides a generic schema for audio classification through the property **`ac:audioCategory`** that associates any audio expression, manifestation, or item to some generic **`ac:AudioCategory`**. These two terms can be specialised to provide spefic categorisations.\n\n### Manifestations: audio clips and collections\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Manifestation.png)\n\nThe figure above shows classes and properties related to audio manifestations. An instance of **`ac:AudioClip`**, a subclass of `ac:AudioManifestation`, is any audio segment that has been published in some form or uploaded for consumption, for example, a track in a music label's repository or a sound in an audio repository, library or archive.\n\nThe class **`ac:AudioCollection`**, another subclass of `ac:AudioManifestation`, is used to represent collections of audio clips. The class **`ac:AudioCollectionNode`** is used to represent single nodes of a collection, offering local information like the index in the collection and pointers to previous and next nodes. The separation between the collection node and its actual content (e.g., an `ac:AudioClip`) permits the same content to be shared in multiple collections.\n\nThe content of each node of a collection is not limited to an `ac:AudioClip`, but may contain any `ac:AudioManifestation`. Collections can thus contain other collections to support specific cases, e.g. a mapping to the Music Ontology model where an `mo:Release` can contain multiple `mo:Record`(s) that can in turn contain multiple `mo:Track`(s).\n### Items: audio files\n![A diagram showing ac:Item class and related class and properties](./img/AC-Ontology-Item.png)\n\nAn `ac:AudioItem` is a concrete exemplar of an audio manifestation. In our domain, the main exemplars are the actual audio files. \n\nThe corresponding class **`ac:AudioFile`** is a subclass of `ac:AudioItem`. It is subclass of `ebu:MediaResource` too and the corresponging properties of EBU Core can be used to describe the file (e.g., `ebu:hasEncodingFormat`, `ebu:fileSize`).\n\n### Expressions: audio signals\n![A diagram showing ac:Expression class and related class and properties](./img/AC-Ontology-Expression.png)\n\nWhile `ac:AudioFile` represents a concrete file encoded in a certain format, **`ac:DigitalSignal`** is the representation of the corresponding digital signal. `ac:DigitalSignal` is a subclass of `ac:MusicalExpression`. \n\nThe data properties `ac:sampleRate`, `ac:bitsPerSample`, and `ac:channels`, associate a signal with its basic features specific to digital representations.\n\nThe property `ac:publicationOf` can be used to associate an `ac:AudioClip` with the corresponding digital signal. The property `ac:encodes` instead, associates an `ac:AudioFile` with the encoded digital signal.\n\n### Events: recording/syntesis\n![A diagram showing ac:SignalProduction class and related class and properties!](./img/AC-Ontology-SignalProduction.png)\n\nThe description of temporal events is crucial to formalise and document transitions in the workflow of audio production and publication. The class `event:Event` of the Event Ontology is thus specialised for specific actions that are interesting for the audio domain.\n\nUsing the `event:Event` class, details of an event such as its location in time and space, its factor and its products may be explicitly described. Moreover, events can be composed using the property `event:sub_event`, to build complex events.\n\nThe class `ac:SignalProduction` represents the act of producing a `ac:Signal`, which could be either an `ac:AnalogSignal` or a `ac:DigitalSignal`. This is complemented by **`ac:Recording`**, representing the process of recording a sound (`ac:Sound`) or the product of **`ac:Synthesis`**, in case of artificially generated sounds. \n\n### Events (continued): publication\n![A diagram showing ac:Publication class and related class and properties!](./img/AC-Ontology-Publication.png)\n\nThe event **`ac:AudioPublication`** represents the public release of a piece of work, e.g., the release of a new album by a band.\n\n### Usage Example\n![A diagram showing an example of ontology usage!](./img/AC_Example-AudioClip.png)\n\nThe figure above shows an example of use of the Audio Commons ontology to represent a sound from the Freesound database. 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This work has been developed in the context of the STF 566, which was established with the goal to create four SAREF extensions, one of them for the automotive domain.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF4AUTO: an extension of SAREF for the automotive domain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://terminology.tib.eu/ts/ontologies/s4auto" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "nfdi4ing" }, { "@value": "fid move" }, { "@value": "traffic engineering" }, { "@value": "engineering" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4auto/" }, "https://bioregistry.io/schema/#0000005": "AcousticSensor", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4auto/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "s4auto" }, "https://bioregistry.io/schema/#0000024": "https://saref.etsi.org/saref4auto/", "https://bioregistry.io/schema/#0000027": { "@id": "https://saref.etsi.org/saref4auto/AcousticSensor" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.auto" } }, { "@id": "https://registry.bio2kg.org/resource/virmirdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://orcid.org/0000-0002-0094-3186", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Lars Eisen" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "lars.eisen@colostate.edu" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/energymarketroles", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4inma", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/lov" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://aber-owl.net/ontology/GECKO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/registry/nucc.taxonomy", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. 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} }, { "@id": "https://bioregistry.io/registry/oerschema", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "A RDF vocabulary for OER content on the web.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/open-curriculum/oerschema" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "OER Schema" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "curriculum" }, { "@value": "open educational resources" }, { "@value": "curricula" }, { "@value": "oers" }, { "@value": "education" }, { "@value": "oer" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://oerschema.org" }, "https://bioregistry.io/schema/#0000005": "InstructionalPattern", "https://bioregistry.io/schema/#0000006": "https://oerschema.org/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:N16e71f5023ec4b9ea8571348ea9b3fad" }, "https://bioregistry.io/schema/#0000024": "https://oerschema.org/", "https://bioregistry.io/schema/#0000027": { "@id": "https://oerschema.org/InstructionalPattern" }, "https://bioregistry.io/schema/#0000029": { "@value": "oerschema" } }, { "@id": "_:N16e71f5023ec4b9ea8571348ea9b3fad", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Michael Collins" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioportal.bioontology.org/ontologies/DDI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://registry.identifiers.org/registry/insdc.cds", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/dialnet.author", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "identifier of an author in Dialnet", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Dialnet author ID" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "http://www.wikidata.org/entity/P1607" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "person" }, { "@value": "researcher" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://dialnet.unirioja.es" }, "https://bioregistry.io/schema/#0000005": "241889", "https://bioregistry.io/schema/#0000006": "https://dialnet.unirioja.es/servlet/autor?codigo=$1", "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", "https://bioregistry.io/schema/#0000012": false, 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A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html).\n\nThere are few notable resources providing access to the Enzyme Nomenclature:\n\n
WebsiteHomepageNotes
ExplorEnzhttps://www.enzyme-database.orgThis is the resource officially recommended by IUBMB
IUBMB (via by Queen Mary)https://iubmb.qmul.ac.uk/enzymeThis is a web-based version of the 1992 publication.
IntEnzhttps://www.ebi.ac.uk/intenzShutdown in 2024
ExPaSyhttps://enzyme.expasy.org
EnzymePortalhttps://www.ebi.ac.uk/enzymeportal
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SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. 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"http://purl.org/dc/terms/description": "UniProt provides proteome sets of proteins whose genomes have been completely sequenced.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "UniProt Proteomes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://togoid.dbcls.jp/#UniprotProteome" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.uniprot.org/proteomes" }, "https://bioregistry.io/schema/#0000005": "UP000005640", "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/proteomes/$1", "https://bioregistry.io/schema/#0000008": "^UP\\d{9}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/proteomes/", "https://bioregistry.io/schema/#0000027": { "@id": 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Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from )", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Zazuko Prefix Server" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://prefix.zazuko.com/" }, "https://bioregistry.io/schema/#0000005": "frbr", "https://bioregistry.io/schema/#0000006": "https://prefix.zazuko.com/prefix/$1:", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-2079-9636" }, "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/zazuko:", "https://bioregistry.io/schema/#0000027": { "@id": "https://prefix.zazuko.com/prefix/frbr:" }, "https://bioregistry.io/schema/#0000029": { "@value": "zazuko" } }, { "@id": "https://bioregistry.io/registry/osti.article", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-8741-7823" }, "http://purl.org/dc/terms/description": "The U.S. Department of Energy (DOE) Office of Scientific and Technical Information (OSTI) is the main metadata archive for permanent storage of registered [DOE DOI products](https://www.osti.gov/pids/doi-services/doe-data-id-service) (datasets, code, articles, patents, multimedia, etc.). When a DOI is minted a unique OSTI identifier for each record [{osti_id}](https://www.osti.gov/api/v1/docs#endpoints-singlerecord) is provided as the suffix in the DOI schema ([{site-specific-prefix}/{user-supplied-doi-infix}/{osti_id}](https://www.osti.gov/pids/doi-services)) and can be alternatively used as the main product identifier endpoint when [searching OSTI.GOV](https://www.osti.gov/search-tools) registry archive (see example below). 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"https://bioregistry.io/registry/diseasesdb", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Diseases Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "http://www.wikidata.org/entity/P557" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": 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"http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://www.uniprot.org/database/DB-0266", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "http://www.ontobee.org/ontology/BCGO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/collection/0000010", "@type": "https://bioregistry.io/schema/#0000003", "http://purl.org/dc/elements/1.1/creator": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/elements/1.1/description": { "@value": "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" }, "http://purl.org/dc/terms/hasPart": [ { "@id": "https://bioregistry.io/registry/brenda.ligand" }, { "@id": "https://bioregistry.io/registry/chembl" }, { "@id": "https://bioregistry.io/registry/pharmgkb.disease" }, { "@id": "https://bioregistry.io/registry/ecocyc" }, { "@id": "https://bioregistry.io/registry/rhea" }, { "@id": "https://bioregistry.io/registry/pombase" }, { "@id": "https://bioregistry.io/registry/orpha" }, { "@id": "https://bioregistry.io/registry/px" }, { "@id": "https://bioregistry.io/registry/pmc" }, { "@id": "https://bioregistry.io/registry/interpro" }, { "@id": "https://bioregistry.io/registry/gbif" }, { "@id": "https://bioregistry.io/registry/brenda.ligandgroup" }, { "@id": "https://bioregistry.io/registry/civic.tid" }, { "@id": "https://bioregistry.io/registry/civic.vid" }, { "@id": "https://bioregistry.io/registry/brenda" }, { "@id": "https://bioregistry.io/registry/hgnc" }, { "@id": "https://bioregistry.io/registry/panther.node" }, { "@id": "https://bioregistry.io/registry/uniprot" }, { "@id": "https://bioregistry.io/registry/rgd" }, { "@id": "https://bioregistry.io/registry/ensembl" }, { "@id": "https://bioregistry.io/registry/pharmgkb.pathways" }, { "@id": "https://bioregistry.io/registry/civic.sid" }, { "@id": "https://bioregistry.io/registry/civic.aid" }, { "@id": "https://bioregistry.io/registry/ena.embl" }, { "@id": "https://bioregistry.io/registry/civic.did" }, { "@id": "https://bioregistry.io/registry/bacdive" }, { "@id": "https://bioregistry.io/registry/civic.gid" }, { "@id": "https://bioregistry.io/registry/civic.eid" }, { "@id": "https://bioregistry.io/registry/panther.pathway" }, { "@id": "https://bioregistry.io/registry/wormbase" }, { "@id": "https://bioregistry.io/registry/pharmgkb.drug" }, { "@id": "https://bioregistry.io/registry/pdb" }, { "@id": "https://bioregistry.io/registry/panther.family" }, { "@id": "https://bioregistry.io/registry/bto" }, { "@id": "https://bioregistry.io/registry/mgi" }, { "@id": "https://bioregistry.io/registry/zfin" }, { "@id": "https://bioregistry.io/registry/chebi" }, { "@id": "https://bioregistry.io/registry/ucsc" }, { "@id": "https://bioregistry.io/registry/pharmgkb.gene" }, { "@id": "https://bioregistry.io/registry/reactome" }, { "@id": "https://bioregistry.io/registry/agrkb" }, { "@id": "https://bioregistry.io/registry/eupath" }, { "@id": "https://bioregistry.io/registry/panther.pthcmp" }, { "@id": "https://bioregistry.io/registry/flybase" }, { "@id": "https://bioregistry.io/registry/orphanet.ordo" }, { "@id": "https://bioregistry.io/registry/go" }, { "@id": "https://bioregistry.io/registry/sgd" }, { "@id": "https://bioregistry.io/registry/gnomad" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Global Biodata Coalition - Global Core Biodata Resources" } }, { "@id": "https://bioregistry.io/registry/nihreporter.project", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0001-9439-5346" }, "http://purl.org/dc/terms/description": "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "NIH RePORTER" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "bibliometrics" }, { "@value": "project" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://reporter.nih.gov/" }, "https://bioregistry.io/schema/#0000005": "10343835", "https://bioregistry.io/schema/#0000006": "https://reporter.nih.gov/project-details/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:N26eaa5bbbcb045be8a5b8d5394f35eaa" }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "https://reporter.nih.gov/project-details/", "https://bioregistry.io/schema/#0000027": { "@id": "https://reporter.nih.gov/project-details/10343835" }, "https://bioregistry.io/schema/#0000029": { "@value": "nihreporter.project" } }, { "@id": "_:N26eaa5bbbcb045be8a5b8d5394f35eaa", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "NIH Reporter Helpdesk" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "report@mail.nih.gov" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/oa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/zazuko" } }, { "@id": "https://bartoc.org/en/node/20719", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/uat", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://bioregistry.io/registry/sweet.phatmops", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Pressure", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Phenomena Atmosphere Pressure" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "phenomena" }, { "@value": "atmosphere pressure" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/phenAtmoPressure/" }, "https://bioregistry.io/schema/#0000005": "AtmosphericAnticyclone", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/phenAtmoPressure/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "sophatmops" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/phenAtmoPressure/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/phenAtmoPressure/AtmosphericAnticyclone" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.phatmops" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02563", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/c4o", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/lov" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/NBN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://bioregistry.io/registry/mgnify.samp", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "MGnify Sample" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp" }, { "@id": "https://registry.identifiers.org/registry/mgnify.samp" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.ebi.ac.uk/metagenomics" }, "https://bioregistry.io/schema/#0000005": "SRS086444", "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/samples/$1", "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/samples/", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.ebi.ac.uk/metagenomics/samples/SRS086444" }, "https://bioregistry.io/schema/#0000029": { "@value": "mgnify.samp" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/multicellds.cell_line", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/registry/multicellds" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "MultiCellDS Digital Cell Line" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE" }, { "@id": "https://registry.identifiers.org/registry/multicellds.cell_line" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://multicellds.org/MultiCellDB.php" }, "https://bioregistry.io/schema/#0000005": "MCDS_L_0000000001", "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", "https://bioregistry.io/schema/#0000008": "^MCDS_L_[a-zA-Z0-9]{1,10}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", "https://bioregistry.io/schema/#0000027": { "@id": "http://multicellds.org/MultiCellDB/MCDS_L_0000000001" }, "https://bioregistry.io/schema/#0000029": { "@value": "multicellds.cell_line" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MEX", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { "@id": "https://registry.identifiers.org/registry/rism", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/arrayexpress.platform", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "ArrayExpress Platform" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform" }, { "@id": "https://registry.identifiers.org/registry/arrayexpress.platform" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://www.ebi.ac.uk/arrayexpress/" }, "https://bioregistry.io/schema/#0000005": "A-GEOD-50", "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/arrayexpress/arrays/$1", "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/arrayexpress/arrays/", "https://bioregistry.io/schema/#0000027": { "@id": "https://www.ebi.ac.uk/arrayexpress/arrays/A-GEOD-50" }, "https://bioregistry.io/schema/#0000029": { "@value": "arrayexpress.platform" } }, { "@id": "http://www.wikidata.org/entity/Q81661853", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://www.obofoundry.org/ontology/nif_cell", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://registry.bio2kg.org/resource/pathwaycommons", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://fairsharing.org/FAIRsharing.pn1sr5", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { "@id": "https://www.uniprot.org/database/DB-0026", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://www.re3data.org/repository/r3d100011906", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { "@id": "https://bioregistry.io/registry/tib.dot", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The Damage Topology Ontology (DOT) allows the definition of damage representations and their relations with other damages and affected construction components. The ontology supports a generic damage modeling approach and therefore could be applied for any type of degradation as well as for any construction type (e.g. buildings or bridges). Damage representations can be modeled either as damaged areas (dot:DamageArea) or elementary damage elements (dot:DamageElement). Thereby, instances of dot:DamageElement should be aggregated in a dot:DamageArea, however significant damages e.g. large cracks could be modelled as dot:DamageElement without dot:DamageArea. For grouping multiple coherent damages, a damage pattern could be defined by using dot:DamagePattern as third type for damage representation. Besides the topological damage classes, damage can also be categorized acording to a certain damage type using subclasses of dot:ClassifiedDamage as defined in extensions of DOT. A division between structural and non-structural damage is made by using the dot:StructuralDamage or dot:Defect classes. 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It is based on RDF and NRL, the NEPOMUK Representational Language and other Semantic Web ontologies. This document describes the principle elements of the language and how to use them. (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Personal Information Model" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.semanticdesktop.org/ontologies/pimo" }, "https://bioregistry.io/schema/#0000005": "Note", "https://bioregistry.io/schema/#0000006": "http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#Note" }, "https://bioregistry.io/schema/#0000029": { "@value": "nepomuk.pimo" } }, { "@id": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=494", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/pathguide" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc02556", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://bioregistry.io/registry/sweet.repsp", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Science Provenance", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Representation Science Provenance" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "representation science provenance" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/reprSciProvenance/" }, "https://bioregistry.io/schema/#0000005": "Agent", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/reprSciProvenance/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "sorepsp" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/reprSciProvenance/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/reprSciProvenance/Agent" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.repsp" } }, { "@id": "https://registry.identifiers.org/registry/pubmed", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/dermo", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/dermatology-ontology/dermatology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Human Dermatological Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://bioportal.bioontology.org/ontologies/DERMO" }, { "@id": "http://aber-owl.net/ontology/DERMO" }, { "@id": "https://fairsharing.org/FAIRsharing.k008w7" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { "@value": "dermatology" }, { "@value": "disease" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0085-x" }, "https://bioregistry.io/schema/#0000005": "0000000", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DERMO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://aber-owl.net/media/ontologies/DERMO/10/dermo.obo" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-5111-7263" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DERMO_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/DERMO_0000000" }, "https://bioregistry.io/schema/#0000029": { "@value": "dermo" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://www.obofoundry.org/ontology/ehdaa2", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { "@id": "https://bioregistry.io/registry/ddinter.interaction", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Curated Drug-Drug Interactions Database - Interaction" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "relationships" }, { "@value": "drugs" }, { "@value": "drug-drug interactions" }, { "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://ddinter.scbdd.com" }, "https://bioregistry.io/schema/#0000005": "1122888", "https://bioregistry.io/schema/#0000006": "http://ddinter.scbdd.com/ddinter/interact/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-3604-3785" }, "https://bioregistry.io/schema/#0000024": "http://ddinter.scbdd.com/ddinter/interact/", "https://bioregistry.io/schema/#0000027": { "@id": "http://ddinter.scbdd.com/ddinter/interact/1122888" }, "https://bioregistry.io/schema/#0000029": { "@value": "ddinter.interaction" } }, { "@id": "https://registry.identifiers.org/registry/odc.sci", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://registry.bio2kg.org/resource/mpath", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://registry.identifiers.org/registry/hgnc.genegroup", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://fairsharing.org/FAIRsharing.9gqfpm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://fairsharing.org/FAIRsharing.4ef690", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.bio2kg.org/resource/vita", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://terminology.tib.eu/ts/ontologies/ifc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/tib" } }, { "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { "@id": "https://registry.bio2kg.org/resource/hdr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://registry.bio2kg.org/resource/scpd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/registry/lattes", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "number for the Lattes Platform entry on the person or group. Relationship between entry and subject must be supported by a source.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Lattes Platform number" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "http://www.wikidata.org/entity/P1007" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "person" }, { "@value": "researcher" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://lattes.cnpq.br" }, "https://bioregistry.io/schema/#0000005": "0061106995455595", "https://bioregistry.io/schema/#0000006": "https://lattes.cnpq.br/$1", "https://bioregistry.io/schema/#0000008": "^\\d{16}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://lattes.cnpq.br/", "https://bioregistry.io/schema/#0000027": { "@id": "https://lattes.cnpq.br/0061106995455595" }, "https://bioregistry.io/schema/#0000029": { "@value": "lattes" } }, { "@id": "http://www.wikidata.org/entity/P7834", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/one", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { "@id": "https://www.obofoundry.org/ontology/zea", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { "@id": "https://registry.identifiers.org/registry/worfdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/registry/aaindex", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-1216-4761" }, "http://purl.org/dc/terms/description": "Identifier of an entry from the AAindex database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "AAindex" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://registry.bio2kg.org/resource/aaindex" }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc00004" }, { "@id": "http://edamontology.org/data_1128" }, { "@id": "http://www.wikidata.org/entity/Q85738825" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.genome.ad.jp/aaindex/" }, "https://bioregistry.io/schema/#0000005": "BUNA790102", "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?aaindex:$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-7883-3756" }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?aaindex:", "https://bioregistry.io/schema/#0000027": { "@id": "http://www.genome.jp/dbget-bin/www_bget?aaindex:BUNA790102" }, "https://bioregistry.io/schema/#0000029": { "@value": "aaindex" } }, { "@id": "https://orcid.org/0000-0002-5941-3390", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Carl F. Schaefer" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "schaefec@mail.nih.gov" } }, { "@id": "https://bioregistry.io/registry/aero", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0002-1216-4761" }, "http://purl.org/dc/terms/description": "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Adverse Event Reporting Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero" }, { "@id": "https://bioportal.bioontology.org/ontologies/AERO" }, { "@id": "https://www.obofoundry.org/ontology/aero" }, { "@id": "http://www.wikidata.org/entity/Q55118235" }, { "@id": "https://fairsharing.org/FAIRsharing.rycy2x" }, { "@id": "https://bioregistry.io/metaregistry/biocontext/AERO" }, { "@id": "http://aber-owl.net/ontology/AERO" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "biomedical science" }, { "@value": "ontology" }, { "@value": "medicine" }, { "@value": "health science" }, { "@value": "obo" }, { "@value": "adverse reaction" }, { "@value": "preclinical studies" }, { "@value": "electronic health record" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://purl.obolibrary.org/obo/aero" }, "https://bioregistry.io/schema/#0000005": "0000125", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AERO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/aero.owl" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-9551-6370" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AERO_", "https://bioregistry.io/schema/#0000029": { "@value": "aero" } }, { "@id": "https://bioregistry.io/registry/sdmx", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "This vocabulary extends the data cube vocabulary to support publication of statistical data in RDF, using an information model based on SDMX", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SDMX-RDF vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/sdmx" }, { "@id": "https://bioregistry.io/metaregistry/zazuko/resolve/sdmx" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "methods" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://raw.githubusercontent.com/UKGovLD/publishing-statistical-data/master/specs/src/main/vocab/sdmx.ttl" }, "https://bioregistry.io/schema/#0000005": "EntityRole", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { "@value": "sdmx" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://registry.identifiers.org/registry/kegg.pathway", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/bioregistry.registry", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Bioregistry's meta-registry", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Bioregistry Metaregistry" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "data science" }, { "@value": "registry" }, { "@value": "data integration" }, { "@value": "metaregistry" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://bioregistry.io/metaregistry/" }, "https://bioregistry.io/schema/#0000005": "miriam", "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/", "https://bioregistry.io/schema/#0000027": { "@id": "https://bioregistry.io/metaregistry/miriam" }, "https://bioregistry.io/schema/#0000029": { "@value": "bioregistry.registry" } }, { "@id": "https://fairsharing.org/FAIRsharing.fcwyhz", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://registry.identifiers.org/registry/d1id", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://catalog.integbio.jp/dbcatalog/en/record/nbdc00054", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/integbio" } }, { "@id": "https://bioregistry.io/registry/psdo", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).\n\nLandis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. 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The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "NFDI4Culture Metadata API" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "generic" }, { "@value": "organization" }, { "@value": "digital humanities" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://nfdi4culture.de/id" }, "https://bioregistry.io/schema/#0000005": "E4330", "https://bioregistry.io/schema/#0000006": "https://nfdi4culture.de/id/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://nfdi4culture.de/id/", "https://bioregistry.io/schema/#0000027": { "@id": "https://nfdi4culture.de/id/E4330" }, "https://bioregistry.io/schema/#0000029": { "@value": "nfdi4culture.id" } }, { "@id": "https://fairsharing.org/FAIRsharing.fb99fa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioportal.bioontology.org/ontologies/CARO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GABI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/ndc", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. 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(from homepage)\n\nNote that the identifier in this semantic space is not the one used in the webpages", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "India Clinical Trials Registry" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://ctri.nic.in" }, "https://bioregistry.io/schema/#0000005": "CTRI/2023/04/052053", "https://bioregistry.io/schema/#0000006": "https://trialsearch.who.int/Trial2.aspx?TrialID=$1", "https://bioregistry.io/schema/#0000008": "^CTRI/\\d{4}/\\d{2,3}/\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://trialsearch.who.int/Trial2.aspx?TrialID=", "https://bioregistry.io/schema/#0000027": { "@id": "https://trialsearch.who.int/Trial2.aspx?TrialID=CTRI/2023/04/052053" }, "https://bioregistry.io/schema/#0000029": { "@value": "ctri" } }, { "@id": "https://registry.identifiers.org/registry/gitlab", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://www.re3data.org/repository/r3d100010561", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { "@id": "https://bioregistry.io/registry/co_326", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "Draft version", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Coconut ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://cropontology.org/ontology/CO_326" }, { "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326" }, { "@id": "http://agroportal.lirmm.fr/ontologies/CO_326" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://cropontology.org/ontology/CO_326/Coconut" }, "https://bioregistry.io/schema/#0000005": "0000254", "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_326:$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0002-6020-5919" }, "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_326:", "https://bioregistry.io/schema/#0000027": { "@id": "https://cropontology.org/rdf/CO_326:0000254" }, "https://bioregistry.io/schema/#0000029": { "@value": "co_326" } }, { "@id": "https://togoid.dbcls.jp/#Bioproject", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/togoid" } }, { "@id": "https://bioregistry.io/schema/#0000018", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { "@value": "Terms from the source appear in the target resource" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "appears in" }, "http://www.w3.org/2000/01/rdf-schema#range": { "@id": "https://bioregistry.io/schema/#0000001" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/bco", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/BiodiversityOntologies/bco" }, 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}, { "@id": "https://registry.bio2kg.org/resource/giardiadb" }, { "@id": "https://registry.bio2kg.org/resource/pt" }, { "@id": "https://registry.bio2kg.org/resource/snornalbmedb" }, { "@id": "https://registry.bio2kg.org/resource/datf" }, { "@id": "https://registry.bio2kg.org/resource/4dn" }, { "@id": "https://registry.bio2kg.org/resource/aao" }, { "@id": "https://registry.bio2kg.org/resource/sgn" }, { "@id": "https://registry.bio2kg.org/resource/geneannot" }, { "@id": "https://registry.bio2kg.org/resource/ena" }, { "@id": "https://registry.bio2kg.org/resource/asap" }, { "@id": "https://registry.bio2kg.org/resource/cmd" }, { "@id": "https://registry.bio2kg.org/resource/cas" }, { "@id": "https://registry.bio2kg.org/resource/doqcs.pathway" }, { "@id": "https://registry.bio2kg.org/resource/uniprot" }, { "@id": "https://registry.bio2kg.org/resource/reactome" }, { "@id": "https://registry.bio2kg.org/resource/mp" }, { "@id": "https://registry.bio2kg.org/resource/rebase" }, { "@id": 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{ "@id": "https://registry.bio2kg.org/resource/po" }, { "@id": "https://registry.bio2kg.org/resource/ygob" }, { "@id": "https://registry.bio2kg.org/resource/emap.ontology" }, { "@id": "https://registry.bio2kg.org/resource/img.taxon" }, { "@id": "https://registry.bio2kg.org/resource/vbrc" }, { "@id": "https://registry.bio2kg.org/resource/ensembl.fungi" }, { "@id": "https://registry.bio2kg.org/resource/grsdb" }, { "@id": "https://registry.bio2kg.org/resource/bto" }, { "@id": "https://registry.bio2kg.org/resource/merops" }, { "@id": "https://registry.bio2kg.org/resource/antweb" }, { "@id": "https://registry.bio2kg.org/resource/csa" }, { "@id": "https://registry.bio2kg.org/resource/sabiork.reaction" }, { "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage" }, { "@id": "https://registry.bio2kg.org/resource/pubchem.substance" }, { "@id": "https://registry.bio2kg.org/resource/come" }, { "@id": "https://registry.bio2kg.org/resource/pto" }, { "@id": 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"https://registry.bio2kg.org/resource/vita" }, { "@id": "https://registry.bio2kg.org/resource/imex" }, { "@id": "https://registry.bio2kg.org/resource/orthodb" }, { "@id": "https://registry.bio2kg.org/resource/ddanat" }, { "@id": "https://registry.bio2kg.org/resource/citexplore" }, { "@id": "https://registry.bio2kg.org/resource/huge" }, { "@id": "https://registry.bio2kg.org/resource/bindingdb" }, { "@id": "https://registry.bio2kg.org/resource/ncbigene" }, { "@id": "https://registry.bio2kg.org/resource/doi" }, { "@id": "https://registry.bio2kg.org/resource/vhog" }, { "@id": "https://registry.bio2kg.org/resource/cazy" }, { "@id": "https://registry.bio2kg.org/resource/astd" }, { "@id": "https://registry.bio2kg.org/resource/mpi" }, { "@id": "https://registry.bio2kg.org/resource/psi.mi" }, { "@id": "https://registry.bio2kg.org/resource/wikipedia" }, { "@id": "https://registry.bio2kg.org/resource/transportdb" }, { "@id": "https://registry.bio2kg.org/resource/so" }, { "@id": 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"https://registry.bio2kg.org/resource/sao" }, { "@id": "https://registry.bio2kg.org/resource/fix" }, { "@id": "https://registry.bio2kg.org/resource/cutg" }, { "@id": "https://registry.bio2kg.org/resource/cst" }, { "@id": "https://registry.bio2kg.org/resource/lipidbank" }, { "@id": "https://registry.bio2kg.org/resource/ipi" }, { "@id": "https://registry.bio2kg.org/resource/dictybase" }, { "@id": "https://registry.bio2kg.org/resource/mmsinc" }, { "@id": "https://registry.bio2kg.org/resource/eugenes" }, { "@id": "https://registry.bio2kg.org/resource/biomodels" }, { "@id": "https://registry.bio2kg.org/resource/vega" }, { "@id": "https://registry.bio2kg.org/resource/cl" }, { "@id": "https://registry.bio2kg.org/resource/loqate" }, { "@id": "https://registry.bio2kg.org/resource/yrc" }, { "@id": "https://registry.bio2kg.org/resource/unigene" }, { "@id": "https://registry.bio2kg.org/resource/geo" }, { "@id": "https://registry.bio2kg.org/resource/archdb" }, { "@id": "https://registry.bio2kg.org/resource/uniprot.kw" } ], "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Prefix Commons" }, "http://xmlns.com/foaf/0.1/homepage": { "@value": "https://registry.bio2kg.org" }, "https://bioregistry.io/schema/#0000005": { "@value": "doi" }, "https://bioregistry.io/schema/#0000006": { "@value": "https://registry.bio2kg.org/resource/$1" }, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0003-4727-9435" } }, { "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { "@id": "https://bioregistry.io/registry/integbio", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Integbio Database Catalog provides whereabouts information (URL), database description, biological species and other attributes (metadata) of Japanese and international life science databases to make it easier for users to find databases they need. This catalog has been developed as a part of the integration of life science databases promoted by four ministries in Japan: the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor, and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF), and the Ministry of Economy, Trade, and Industry of Japan (METI). 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"http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/ICO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioportal.bioontology.org/ontologies/BCIO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://fairsharing.org/FAIRsharing.48e326", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://fairsharing.org/FAIRsharing.6ccbe6", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "http://www.wikidata.org/entity/P6049", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "http://www.wikidata.org/entity/Q81661779", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/civic.aid", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. 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"http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Curtis Ross" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "http://www.wikidata.org/entity/Q5737131", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://www.uniprot.org/database/DB-0140", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { "@id": "https://bioregistry.io/registry/kim.hochschulfaechersystematik", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "A classification of subjects in Hochschule (universities of applied sciences)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/dini-ag-kim/hochschulfaechersystematik" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "German University Subject Classification System" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://terminology.tib.eu/ts/ontologies/hfs" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "educational resources" }, { "@value": "educational science" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://w3id.org/kim/hochschulfaechersystematik/scheme" }, "https://bioregistry.io/schema/#0000005": "n2", "https://bioregistry.io/schema/#0000006": "https://w3id.org/kim/hochschulfaechersystematik/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": 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"https://bioregistry.io/metaregistry/zazuko" } }, { "@id": "https://bioportal.bioontology.org/ontologies/AERO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { "@id": "https://bioregistry.io/registry/sweet.reagb", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Basin", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/registry/sweet" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, 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It covers scientific fields of Civil Engineering, Architecture and Urban Studies with a special section on digitization. This subject classification has been mapped to several other classification systems. The latest version of the subject classification including these mappings is available at https://gitlab.com/fid-bau/terminologie/fid-baudigital-faecherklassifikation/-/raw/main/Subject_Headings_all_mappings.owl.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "FID BAUdigital Subject Headings" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { "@id": "https://terminology.tib.eu/ts/ontologies/bdsubj" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "digital planning and construction" }, { "@value": "nfdi4ing" }, { "@value": "fid baudigital" }, { "@value": "architecture" }, { "@value": "civil engineering" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://gitlab.com/fid-bau/terminologie/fid-baudigital-faecherklassifikation" }, "https://bioregistry.io/schema/#0000005": "004d64e9-a7ab-4a73-b117-0c6fc6c76d81", "https://bioregistry.io/schema/#0000006": "https://purl.org/fidbaudigital/subjects#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://purl.org/fidbaudigital/subjects#", "https://bioregistry.io/schema/#0000027": { "@id": "https://purl.org/fidbaudigital/subjects#004d64e9-a7ab-4a73-b117-0c6fc6c76d81" }, "https://bioregistry.io/schema/#0000029": { "@value": "fidbaudigital.subject" } }, { "@id": "https://orcid.org/0000-0001-9439-5346", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Benjamin M. Gyori" }, "http://xmlns.com/foaf/0.1/mbox": [ { "@value": "b.gyori@northeastern.edu" }, { "@value": "benjamin_gyori@hms.harvard.edu" } ] }, { "@id": "https://bioregistry.io/registry/ddi.responseunit", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "Indicates the entity that provided the information carried by the variable.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Response Unit" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://vocabularies.cessda.eu/vocabulary/ResponseUnit" }, "https://bioregistry.io/schema/#0000005": "Self", "https://bioregistry.io/schema/#0000006": "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_", "https://bioregistry.io/schema/#0000026": { "@id": "https://ror.org/015em2733" }, "https://bioregistry.io/schema/#0000027": { "@id": "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_Self" }, "https://bioregistry.io/schema/#0000029": { "@value": "ddi.responseunit" } }, { "@id": "https://registry.bio2kg.org/resource/neurolex", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/registry/sweet.mapa", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Particle", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { "@id": "https://bioregistry.io/registry/sweet" } ], "http://usefulinc.com/ns/doap#GitRepository": { "@id": "https://github.com/ESIPFed/sweet" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SWEET Ontology Material Particle" }, "http://www.w3.org/ns/dcat#keyword": [ { "@value": "materials" }, { "@value": "particle" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://sweetontology.net/matrParticle/" }, "https://bioregistry.io/schema/#0000005": "AnomalousEnergeticParticle", "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/matrParticle/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { "@value": "somapa" }, "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/matrParticle/", "https://bioregistry.io/schema/#0000027": { "@id": "http://sweetontology.net/matrParticle/AnomalousEnergeticParticle" }, "https://bioregistry.io/schema/#0000029": { "@value": "sweet.mapa" } }, { "@id": "https://bioregistry.io/registry/sioc.argument", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/contributor": { "@id": "https://orcid.org/0000-0003-4423-4370" }, "http://purl.org/dc/terms/description": "A vocabulary of argumentation predicates for SIOC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Semantically-Interlinked Online Communities Argumentation Ontology" }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://rdfs.org/sioc/spec/" }, "https://bioregistry.io/schema/#0000005": "decides", "https://bioregistry.io/schema/#0000006": "http://rdfs.org/sioc/argument#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000024": "http://rdfs.org/sioc/argument#", "https://bioregistry.io/schema/#0000027": { "@id": "http://rdfs.org/sioc/argument#decides" }, "https://bioregistry.io/schema/#0000029": { "@value": "sioc.argument" } }, { "@id": "https://bioregistry.io/registry/metanetx.reaction", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. 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{ "@value": "morphology" }, { "@value": "obo" }, { "@value": "life cycle stage" }, { "@value": "study design" }, { "@value": "phenomics" }, { "@value": "phenotype" }, { "@value": "genomics" }, { "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.yeastgenome.org/" }, "https://bioregistry.io/schema/#0000005": "0000184", "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/APO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { "@id": "http://purl.obolibrary.org/obo/apo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "https://orcid.org/0000-0001-5472-917X" }, "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/APO_", "https://bioregistry.io/schema/#0000027": { "@id": "http://purl.obolibrary.org/obo/APO_0000184" }, "https://bioregistry.io/schema/#0000029": { "@value": "apo" } }, { "@id": "https://registry.identifiers.org/registry/opm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { "@id": "http://www.wikidata.org/entity/Q81661707", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata.entity" } }, { "@id": "https://bioregistry.io/registry/saref.ehaw", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both: - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e. - Use case 1 ?elderly at home monitoring and support?, - Use case 2 ?monitoring and support of healthy lifestyles for citizens?, - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification. SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology. ![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg) For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). For embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e. - Use case 1 “elderly at home monitoring and support”, - Use case 2 “monitoring and support of healthy lifestyles for citizens”, - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { "@id": "https://terminology.tib.eu/ts/ontologies/s4ehaw" }, { "@id": "http://aber-owl.net/ontology/S4EHAW" }, { "@id": "https://lov.linkeddata.es/dataset/lov/vocabs/s4ehaw" }, { "@id": "https://bioportal.bioontology.org/ontologies/S4EHAW" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "nfdi4ing" }, { "@value": "ontology" }, { "@value": "iot" }, { "@value": "engineering" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "https://saref.etsi.org/saref4ehaw/" }, "https://bioregistry.io/schema/#0000005": "Activity", "https://bioregistry.io/schema/#0000006": "https://saref.etsi.org/saref4ehaw/$1", "https://bioregistry.io/schema/#0000010": { "@id": "http://aber-owl.net/media/ontologies/S4EHAW/1/s4ehaw.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { "@id": "_:Naf12c26b434f40d1b344470838440ced" }, "https://bioregistry.io/schema/#0000023": { "@value": "s4ehaw" }, "https://bioregistry.io/schema/#0000024": "https://saref.etsi.org/saref4ehaw/", "https://bioregistry.io/schema/#0000027": { "@id": "https://saref.etsi.org/saref4ehaw/Activity" }, "https://bioregistry.io/schema/#0000029": { "@value": "saref.ehaw" } }, { "@id": "_:Naf12c26b434f40d1b344470838440ced", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "LOV Migration" }, "http://xmlns.com/foaf/0.1/mbox": { "@value": "mohamed-el-amine.boukerfa@inrae.fr" } }, { "@id": "http://www.wikidata.org/entity/P4394", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://fairsharing.org/FAIRsharing.qv4b3c", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { "@id": "http://aber-owl.net/ontology/NEMO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { "@id": "https://bioregistry.io/metaregistry/lov", "@type": "https://bioregistry.io/schema/#0000002", "http://purl.org/dc/elements/1.1/description": { "@value": "A vocabulary in LOV gathers definitions of a set of classes and properties (together simply called terms of the vocabulary), useful to describe specific types of things, or things in a given domain or industry, or things at large but for a specific usage. Terms of vocabularies also provide the links in linked data, in the above case between a Person and a City. The definitions of terms provided by the vocabularies bring clear semantics to descriptions and links, thanks to the formal language they use (some dialect of RDF such as RDFS or OWL). In short, vocabularies provide the semantic glue enabling Data to become meaningful Data. 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