"antigen" . . . . . . "biomedical science" . "zenodo.record" . . . "experimental measurement" . . . . . "health science" . "omics" . "inaturalist.user" . . . . . "http://avis.princeton.edu/pixie/viewgraph.php?graphID="^^ . "Ontology of species-neutral phenotypes observed in pathogen-host interactions."^^ . . "1058367"^^ . . . . . "huMAP3_04143.1"^^ . . . . "sweet.repsrs" . "c0001"^^ . . . . "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]"^^ . . . "A list containing images of MARC data."^^ . . . . . . "https://www.enzolifesciences.com/$1"^^ . . "Gerald Guala" . . . "false"^^ . "GenPept" . "Python"^^ . "go-term enrichment data" . "dna" . . "Jackson Laboratories Mouse Strain" . . _:N8cd4930ac4c14835a30e9f074ba112d5 "Terue Takatsuki" . . . . "http://www.kegg.jp/entry/"^^ . "gtuco.btuco@gmail.com" . . . "genotype" . "http://www.isni.org/isni/$1"^^ . "Data Source Type" . "http://www.drugtargetontology.org/dto/DTO_$1"^^ . . "nfdi4ing" . . . . "ArmoredRelictInclusion"^^ . . "false"^^ . "atomicMass"^^ . "genome" . . . . . . . . . . "sbml" . . . . "^A\\d{6}$"^^ . "false"^^ . "A controlled vocabulary to describe phenotypic traits in plants."^^ . . . . _:Nf1ef123c9f484bf69dffb2227ecc52bf . "human genetics" . . . "cancer" . . "interlex" . "educational resources" . "false"^^ . . . "life science" . . "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA."^^ . . "false"^^ . _:N0daa7e9a1c504a8492f4a422f5edf3af "edd@usefulinc.com" . "1915"^^ . "Yosef Shiloh" . "https://molbic.idrblab.net/data/cellline/details/"^^ . "false"^^ . . . . . . . "LIPID MAPS" . . "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO)."^^ . . "https://www.nwo.nl/en/projects/"^^ . . "http://www.t3db.org/toxins/$1"^^ . "covid-19" . . . "researcher" . . . "false"^^ . . "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."^^ . . . . "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis."^^ . "markus.kuehbach@physik.hu-berlin.de" . . . "ontology" . . . . . . . "https://mediadive.dsmz.de/ingredients/$1"^^ . . "http://purl.org/heritagedata/schemes/eh_tmt2/concepts/"^^ . . "SWEET Ontology State Spectral Line" . "genome/gene" . . "fisheries science" . "rrid" . "false"^^ . "0000983"^^ . "cognition" . _:Nefe5d7d6881d4dec845881bb7226bf0c "coli-conc" . "rvita@liai.org" . . . "pathogen" . "http://purl.org/dcx/lrmi-vocabs/learningResourceType/"^^ . . "drug" . "health/disease" . "^\\d{7}$"^^ . . . "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry."^^ . . . . . . . . . . . "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community."^^ . . "A collection of resources added during Biocuration 2025 in Kansas City, MO, USA." . "Cooperative Patent Classification" . "false"^^ . . . . . . . "AblationZone"^^ . . "animal genetics" . . . "http://www.ebi.ac.uk/efo/EFO_"^^ . "metabolomics" . "false"^^ . "unit" . "false"^^ . "http://sweetontology.net/reprDataServiceAnalysis/"^^ . "protein" . . "^PA\\d+$"^^ . "PNEUPAN000001000"^^ . "^\\d{7}$"^^ . . . . . "false"^^ . "biomedical science" . "false"^^ . . "biomedical science" . . . "sostsy" . . "sequence" . _:N4dc1f59566be4170b82e53645c11deee . "NFDI4Ing Collection" . . . . . "histone" . . "agriculture" . . . "sweet.repmf" . . . "biomedical science" . . "^\\d+$"^^ . "Address"^^ . . "epawaste" . "protein" . . "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species."^^ . "radiotherapy" . . . . "sequence feature" . "MassIVE" . "client_name"^^ . "Asthenosphere"^^ . . "false"^^ . . . "CODATA Research Data Management Terminology" . "EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries."^^ . . "http://www.w3.org/ns/auth/acl#"^^ . "^\\d+$"^^ . . . . "taxonomy" . "https://odc-tbi.org/data/"^^ . "sweet.realv" . . . . "ODAM (Open Data for Access and Mining) is an Experimental data table management software (EDTMS) to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines.\n\nODAM allows datasets to be explored and then extracted in whole or in part as needed.\n\nFor more information/explanation, see ODAM User's Guide : https://inrae.github.io/ODAM/"^^ . . . "genotype" . . "education level" . "HeatPumpOperatingMode"^^ . . . . . . "MT"^^ . "http://purl.obolibrary.org/obo/CLM_$1"^^ . . "binding site prediction" . "radiomics" . . . "DBPedia Resource" . "Pesticide Properties DataBase" . "http://purl.obolibrary.org/obo/PBPKO_"^^ . . "loc.geographicareas" . "time" . "systems biology" . . "The Bioinorganic Motif Database" . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records."^^ . . "40000617"^^ . . "false"^^ . . "aquaculture" . "dnasu" . . "psychology" . . . . "Tatsuya Kushida" . . "state thermodynamic" . . "orphanet.ordo" . . "nfdi4energy" . . . "water" . "^[1-9][0-9]*$"^^ . . . . . . . . . "nmrxiv.project" . . "cellimage" . "https://publons.com/publon/"^^ . "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data."^^ . . . . . . . "sequence annotation" . . . . "false"^^ . . . . . "https://w3id.org/emmo#"^^ . . "0000509"^^ . "https://vocabularies.cessda.eu/vocabulary/CommonalityType?lang=en#code_"^^ . . . . . . . "rna" . "sweet.sttc" . . . "http://wheat.pw.usda.gov/report?class=gene;name="^^ . "tno.interconnect.building" . . . . . . "biomedical science" . . . "scollins@crossref.org" . "false"^^ . "PSI-MI" . "ontology" . . "https://amzn.com/"^^ . . "ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.\n\nICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records."^^ . "oers" . "carlo.van-driesten@bmw.de" . . "This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI)."^^ . . . "Allocation"^^ . . . "engineering" . . "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object="^^ . "false"^^ . "Intelligence Task Ontology" . . "kim.schularten" . "soprocc" . . "http://www.w3.org/2007/ont/unit#$1"^^ . "http://purl.obolibrary.org/obo/VIDO_$1"^^ . "botany" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Product"^^ . . . . . . . . . "Rhiannon Cameron" . "DragonDB DNA" . "knowledge graph" . "BiometricProperty"^^ . . . . . . "snap" . "Ditch Townsend" . "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."^^ . . . "MIMAT0046872"^^ . "scsn.core" . . . . "transcript analysis by paired-end tag sequencing assay" . . . "ontology" . . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Locations" . . . "https://vietherb.com.vn/metabolites/"^^ . "World Health Organization Verbal Autopsy Code" . . . . . . "rna" . "voaf" . "nfdi4ing" . . . "^[0-9]+$"^^ . "0000038"^^ . . "Steven E. Wilson" . . "Food Classification and Description System (from FSA Food Type identifiers)" . "false"^^ . "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee."^^ . . "preclinical studies" . "genome" . . . "belongsToCluster"^^ . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene."^^ . "SWEET Ontology Property Space" . . "12969"^^ . . "^\\d+$"^^ . . "cordis.organization" . . "This resource is about studies in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]"^^ . "gtr" . . . . "omics" . . . "NCITm" . . "engineering" . . "snoRNABase" . "cbioportal" . . "behavior" . . "structure" . . . "Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets."^^ . "Publication Provenance Prefixes" . "false"^^ . "pharmacological family classification" . "reaction" . "false"^^ . "Genatlas" . . "classification" . . . "https://tools.ietf.org/rfc/rfc"^^ . . . . . . . "Anatomy"^^ . "Chan Zuckerberg CELLxGENE Dataset" . "AT1G73965"^^ . . "smart" . "gene" . "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." . "phenotype" . . "research" . "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1"^^ . . . "dbo" . "loc" . "obo" . . "^\\d+$"^^ . . . . . . "https://mycobrowser.epfl.ch/genes/$1"^^ . . . . . . "http://www.w3.org/2003/g/data-view#$1"^^ . "wos" . "SWEET Ontology State Role Trust" . "true"^^ . . "https://cropontology.org/rdf/CO_359:$1"^^ . . . "The Bacterial and Viral Bioinformatics Resource Center (BV-BRC) annotates features onto specific genomic sequences, such as gene/protein families and their functional impacts. This record represents a sample-specific genome."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy Flux"^^ . . . . . . . . . "software and information systems" . . . . "http://cegg.unige.ch/orthodb/results?searchtext="^^ . "A vocabulary for describing types of Methods associated with creating observations. MethodTypes correspond with ActionTypes in ODM2. An Action must be performed using an appropriate MethodType - e.g., a specimen collection Action should be associated with a specimen collection method."^^ . "coypu" . . "engineering" . . . . . . . "https://www.datascienceontology.org/concept/"^^ . . . . . "https://cropontology.org/rdf/CO_340:$1"^^ . . . . . "UMLS_ICD9CM_2005_AUI" . "https://animaldiversity.org/accounts/"^^ . . "A001094"^^ . . "Mauno Vihinen" . "E-cyanobacterium rule" . "Christopher Mull" . . "ChemRxiv" . . "Triangle"^^ . . "false"^^ . . . "unicarbdb" . "Vbase2" . . "wikipathways" . "lido" . "^[a-z0-9\\-_]+$"^^ . . . "openwemi" . . "https://terminology.fraunhofer.de/voc/raum#"^^ . . . "https://portal.hubmapconsortium.org/browse/collection/"^^ . . . . "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea."^^ . "https://trialsearch.who.int/Trial2.aspx?TrialID="^^ . . . "http://www.w3.org/2003/11/swrl#"^^ . . . "engineering" . . "chemical structure image" . . "ontology" . "current_repository_or_location"^^ . "false"^^ . . "CRW_00469"^^ . "life science" . . . . . "Bio-MINDER Tissue Database" . . . "life science" . "Guy Perrière" . "signor.relation" . "BowenRatio"^^ . "sequence" . . . . . . "false"^^ . "sequence" . "false"^^ . . "3075966"^^ . "genetics" . . . _:Nf3a1a56bb8ce45dcbb8d1df049a37d77 "J.Bard@ed.ac.uk" . "false"^^ . "MU9_3181"^^ . "dimensionless ratio" . . . "2.16.840.1.113883.6.88" . . . . "^\\d+$"^^ . "Orthology Ontology" . . . . "DateTime"^^ . . . "This controlled vocabulary contains terms to describe the mechanism of action for a chemical-target interaction. The terms can be retrieved from ACTION_TYPE table in ChEMBL's SQL dump and are used to annotate the DRUG_MECHANISM table. Because these aren't really identifiers, they are transformed by lowercasing and replacing spaces with dashes to form 'identifiers'. The pattern in the Bioregistry record contains an enumeration of the 33 allowed values as of ChEMBL v35."^^ . . . "CohesinDB - cohesin-related chromatin loop" . . "binaural beats" . "resource metadata" . . "50-00-0"^^ . "Node Package Manager" . "cdna/est" . "International Classification of Diseases, 10th Revision, Procedure Coding System" . . . . "46"^^ . . . . . "ontology" . "ino" . . . . . . "9606"^^ . "^DTXSID\\d+$"^^ . "icpd" . "SWRL XML Concrete Syntax" . "MycoBrowser leprae" . "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1"^^ . "https://www.bgee.org/gene/"^^ . . "annotation" . . . "4884"^^ . . "interaction" . . "false"^^ . . "SPU_000001"^^ . . "cheminformatics" . . . "database" . "xml" . "protein domain" . . "protein structure" . "NLXCELL" . "organism" . "genomics" . "nfdi4chem" . "http://data.europa.eu/eli/ontology#$1"^^ . . "^\\d+$"^^ . "45539"^^ . . . . . . "DIP-743N"^^ . . "4900"^^ . . "life science" . "co_367" . "false"^^ . . . "Library of Congress Subject Headings - Genre Forms" . . . "100000000000001"^^ . "rna" . "lagonzalezmo@unal.edu.co" . . . . . "phagedive" . "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools."^^ . "research on teaching, learning and training" . "ab275461"^^ . . . . . "obo" . . . "image/movie" . . "FDA Submission Tracking Number" . . . "hsa-let-7a-2-3p"^^ . . . "lbo" . . . "SWEET Ontology State Realm" . "DATU" . . . . "sciprofiles" . . "http://sweetontology.net/procStateChange/"^^ . . . . . "^XB\\-\\w+\\-\\d+$"^^ . . "http://www.w3.org/ns/org#$1"^^ . "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#"^^ . . . . . "false"^^ . "A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources."^^ . "TC" . "false"^^ . "0004486"^^ . . . . . "biocuration" . . . "sdy998"^^ . . . "Wikidata" . . . "Werner Müller" . "http://purl.obolibrary.org/obo/SEPIO_"^^ . . "https://models.physiomeproject.org/workspace/$1"^^ . . "sweet.reptd" . . . "inaturalist.observation" . . . "false"^^ . . . "gene" . "An ontology of information entities about an individual"^^ . . "PubMed Health" . . "ISBN-10" . . . . "miriam" . . "https://osdr.nasa.gov/bio/repo/data/experiments/"^^ . . "molecular biology" . . "The midlevel energy ontology (MENO) is a BFO-based midlevel ontology. It comprises the concepts for energy qualities, energy-based dispositions and energy-driven transformation and transfer processes and their interrelations. It has the goal to provide an upper level structure for these concepts for energy-related domain ontologies."^^ . . . . . . "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology."^^ . "biomedical" . . . . . "kegg.genome" . . . . "false"^^ . . "http://purl.obolibrary.org/obo/OBCS_$1"^^ . "http://vocabulary.odm2.org/methodtype/$1"^^ . . "false"^^ . . . "false"^^ . "mingxun.wang@cs.ucr.edu" . . "ontology" . "Protein Model Database" . "false"^^ . "image/movie" . . "A cell line collection"^^ . "life sciences, biology" . . . . "false"^^ . "chembiosys" . . "http://terminology.lido-schema.org/recordMetadataDate_type/"^^ . . . . "go" . . . . "22-46615880-T-C"^^ . . . . . . . . "Human developmental anatomy, abstract version" . . . . "FundRef" . . "ontology" . . . "mesh" . . "true"^^ . "mmo" . "recombinase" . "phylogenomics" . . . "obo" . . . "trnadbce" . . . . "co_350" . . "chembl.mechanism" . "false"^^ . "protein" . "enzyme" . . . "63189"^^ . "http://sweetontology.net/phenOcean/$1"^^ . "blast" . . . . . "life science" . . . "https://covid19.sfb.uit.no/api/records/$1"^^ . . . . . . "health/disease" . . "annotation" . "brazma@ebi.ac.uk" . . "https://www.confident-conference.org/index.php/Event:"^^ . . . "Snapshot" . . "icd9cm" . "http://dramp.cpu-bioinfor.org/browse/All_Information.php?id="^^ . . "expression" . . . . "ncbitaxon" . "15"^^ . . . "Metabolomics Workbench Metabolite Database" . . "obo" . . . . . . . . "TAB-884"^^ . "protein" . "false"^^ . "http://purl.obolibrary.org/obo/NBO_"^^ . "^mt\\d+$"^^ . . . "Multiple alignment" . . "mw.refmet" . . . "Drosophila Genomics Resource Center" . . "Supplier of mice for research purposes. [from RRID]"^^ . . . "^\\w+$"^^ . . "ontology" . . . . . . . "Dialnet journal" . "https://vocabularies.cessda.eu/vocabulary/DateType?lang=en#code_$1"^^ . . "concept23831"^^ . . "organism" . . "structure" . "This specification contains a framework for representing pointers - entities that permit identifying a portion or segment of a piece of content - making use of the Resource Description Framework (RDF). It also describes a number of specific types of pointers that permit portions of a document to be referred to in different ways. When referring to a specific part of, say, a piece of web content, it is useful to be able to have a consistent manner by which to refer to a particular segment of a web document, to have a variety of ways by which to refer to that same segment, and to make the reference robust in the face of changes to that document. This specification is part of the Evaluation And Report Language (EARL) but can be reused in other contexts too. [from homepage]"^^ . "Pathway ontology" . "Morphological and physiological measurement records generated from clinical and model organism research and health programs."^^ . "AGROVOC" . . . "shacl" . . . . "w3" . . . "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms."^^ . "62"^^ . _:N25ba11211c6b4b1c958701fbcd056faa "nospam@iandavis.com" . "Library of Congress Subject Schemes" . "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a"^^ . . . . . . . . "sébastien Aubourg" . . "https://ligandbook.org/package/$1"^^ . . . "false"^^ . "4D Nucleome Data Portal Biosource" . . . . "Rat Genome Database strain" . "syndication" . "biomedical science" . . "SciCrunch Registry" . . "http://terminology.lido-schema.org/identifier_type/"^^ . "Open Source Initiative License" . . . . . . "false"^^ . "100"^^ . "researcher" . . . . . . . "epidemiology" . "genetics" . "ontology" . . . . "proteomicsdb.protein" . "98034"^^ . . . . "bcbc" . "Diagnostic and Statistical Manual of Mental Disorders (5th Edition)" . "Agent"^^ . . . . . . "openWEMI Vocabulary" . "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?"^^ . . . . "https://cropontology.org/rdf/CO_365:"^^ . . . . "small molecule" . . "Wonpil Im" . . "enzymatic reaction" . . . . . "study design" . . . "fid baudigital" . . . . . . "genetics" . . . "false"^^ . . . . "A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods"^^ . . . "ontology" . . . . . . . "false"^^ . . . . "LncBook accommodates a high-quality collection of human lncRNA genes and transcripts, and incorporates their abundant annotations at different omics levels, thereby enabling users to decipher functional signatures of lncRNAs in human diseases and different biological contexts."^^ . "2196"^^ . "school subject" . . "flow cytometry assay" . . . . "http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1"^^ . . "false"^^ . "phylomedb" . . "single-cell multimodal omics" . . "false"^^ . . "microbiology" . . . . . "Mappings from SIOC to SWAN, with a small number of aux terms"^^ . . . . "receptome.family" . "google.book" . "An issue on the UBERON GitHub Issue tracker"^^ . . . . . "https://data.gesis.org/thesoz/concept_"^^ . . "The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2)."^^ . "false"^^ . . . . . . . "^\\d{7}$"^^ . . . "sequence" . "zeco" . "https://www.zobodat.at/personen.php?id=$1"^^ . . . . . . . . . "open science" . "^\\d{7}$"^^ . . . "marine environment" . . . . . "Animal natural history and life history" . . . "false"^^ . . . . . . "materials" . "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages."^^ . . . . . "protein" . . "model organisms" . . . "https://ximbio.com/reagent/$1"^^ . . "phenomena" . "false"^^ . . "false"^^ . . _:Nf7f43ab158c24ea6a3cf0035ffafc04f "davem@umn.edu" . "http://purl.obolibrary.org/obo/AEON_"^^ . "LINCS vocabularies support the linking of data related to cultural identities and activities, broadly defined, to complement other linked data vocabularies. They aim to support diversity, inclusivity, and context in the representation of human culture online."^^ . . "This ontology defines a taxonomy of software functions based on the work of the NSF-funded EarthCube Resource Registry working group. The functions are generally organized by their role in the research process."^^ . "annotation" . . "Mouse gross anatomy and development, timed" . "^\\d+$"^^ . . . . "repeatsdb.protein" . . . . "engineering" . . "si.prefix" . . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent."^^ . "gene" . . . . "false"^^ . . "true"^^ . . . "annotation"^^ . "mvx" . "https://www.mlcommons.org/mlc-id/$1"^^ . "oio" . "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens."^^ . . "https://www.omicsdi.org/dataset/massive/"^^ . . "regulatory ncrna-mediated post-transcriptional gene silencing" . "true"^^ . . "organism" . . . "protein" . . "false"^^ . . . . . "cell" . "taxrank" . . . . . "false"^^ . . . _:N1b7dc60c325b42ebb846baf3244804cf "alimanfoo@googlemail.com" . "nmrxiv.sample" . . . . "27223"^^ . . "developmental biology" . "Q81661651" . "oryzabase.mutant" . . "text mining" . . "^st\\d+$"^^ . . "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$"^^ . "EuroVoc is the EU's multilingual and multidisciplinary thesaurus. It contains keywords, organized in 21 domains and 127 sub-domains, which are used to describe the content of documents in EUR-Lex. [from homepage]"^^ . . . . . . "http://www.orpha.net/ORDO/Orphanet_$1"^^ . "Profile in the Ontology Management Environment"^^ . . . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Microbiota Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Microbiota Consortium members appropriate for maintaining this collection." . "genecards.genenote" . . . . . "A SKOSMOS server for the French School for Advanced Studies in the Social Sciences (EHSSS)"^^ . . "classification" . . "omim" . . . . . . . . . "rs121909098"^^ . "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1"^^ . "^\\d+$"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Climate"^^ . . . "000140" . "Vocabulary for describing organizational structures, specializable to a broad variety of types of organization."^^ . "transcription factor" . . "placeholder"^^ . "false"^^ . . . . "false"^^ . . . "genome" . "agsd" . . . "sweet.stb" . "http://sweetontology.net/realmLandFluvial/"^^ . "genome" . "Regulation of Transcription Ontology" . "obo" . "cell" . "Kalpana Panneerselvam" . "data mining" . "chemical compound" . . . . . . . . "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format."^^ . . "biopax" . . . . . "Fabian Huch" . "false"^^ . . . "repository" . "NanostarDB aggregates structured and searchable RNA and DNA nanostar data."^^ . . . "multicellds.snapshot" . . . "https://w3id.org/i40/sto#"^^ . "cognitive neuroscience" . . "bbtp" . . . "circrna" . . "100034"^^ . "knowledge and information systems" . . . "https://bartoc.org/" . . "evolution" . . "genome/gene" . . . "https://gtdb.ecogenomic.org/tree?r=$1"^^ . . "http://purl.org/ao/$1"^^ . . . . "gene functional annotation" . . "Archäologisches Museum Hamburg – Stadtmuseum Harburg/Helms-Museum: Material terms" . . "geography" . . . "NIFSTD" . "cdna/est" . . . "false"^^ . . "phenomena" . "https://saref.etsi.org/saref4inma/$1"^^ . "stitch" . . "rna" . . "ontology/terminology/nomenclature" . . . . . . . . . . . . . "functional domain" . "sorepsd" . . "assay" . "scop.sun" . . "CIViC Disease" . . . "fly" . . . "https://w3id.org/digitalconstruction/0.5/Lifecycle#"^^ . "Aquatic Sciences and Fisheries Information System" . . "false"^^ . "12492249"^^ . . . . . . "CYP2A6"^^ . . . "T00232742"^^ . . . . . . . "chromosome, centromeric region" . . "28"^^ . . . . . . "false"^^ . "hbvar" . . . . . . . . . "Linked Infrastructure for Networked Cultural Scholarship Vocabularies" . . . . . . . "Matt Jeffryes" . "sbml" . "ontology" . . . . . "http://purl.obolibrary.org/obo/PO_"^^ . . . . "http://topdb.enzim.hu/?m=show&id=$1"^^ . . "https://cropontology.org/rdf/CO_333:"^^ . "expression" . "VEGA" . "satyasahoo@ieee.org" . "dhba" . . . "Workflow"^^ . "Layla Michán Aguirre" . . . "ANOVA"^^ . . "pseudogene" . . . . . . _:N6955793c545e4473bd0056bb7fffeaae "First DataBank Customer Support" . "LDCM0160"^^ . "repository" . . "sweet.reagb" . "glycomics" . . . "differential gene expression profiling" . . . "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm="^^ . "hsdb" . . . . . . . "http://purl.obolibrary.org/obo/SDDO_"^^ . . . "PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment."^^ . "M94112"^^ . . . . . . "004126"^^ . "SWEET Ontology Realm Atmospheric" . "http://sweetontology.net/stateRoleRepresentative/$1"^^ . . . "false"^^ . "structural biology" . . "bel" . "false"^^ . "dialnet.article" . "interaction/pathway" . . "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]="^^ . "uniprot" . "protein" . "^(cl|tum)\\d+$"^^ . "KEGG" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Aerosol"^^ . "Paul David Neil Hebert" . "biomedical science" . "dblp" . . . . . . "genecards" . "model"^^ . "somapl" . . . "curated information" . "mouse" . "sohua" . . "loc" . . "https://www.ebi.ac.uk/ols4/ontologies/$1" . . "resource metadata" . . . "^r\\d+$"^^ . . . . "https://flybase.org/reports/FBrf"^^ . "^DG\\d+$"^^ . "streptococcus pneumoniae" . "^(\\wT?)?\\d{5}$"^^ . . . "https://uniresolver.io/#did:$1"^^ . . . "obo" . . "structure" . . . . "obo" . . "numerical identifier for a person in the International Plant Names Index"^^ . . . "^\\w\\d{4}\\w\\d{2}(\\-[35])?$"^^ . . . "https://www.probes-drugs.org/compound/$1"^^ . . . "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information."^^ . . "interaction/pathway" . . _:N2a310ca2acaa4e11aa9831f556a6970d "J.Bard@ed.ac.uk" . . . . "Quality"^^ . "AbductionOrForcedDisappearance"^^ . . "taxonomic classification" . "ViPR Strain" . . . "European Food Information Resource Network" . . . . "56305849200"^^ . . . . "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization."^^ . "DrugBank Salts" . . . "text mining" . "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa"^^ . . . . "bioregistry" . "protein" . "The role component of the Allotrope ontology suite"^^ . . . . . "false"^^ . . "protein interactions" . "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." . . "plant physiology" . . . . . "http://sweetontology.net/propTemperature/"^^ . . "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1"^^ . "Appliance"^^ . . "https://biosimulators.org/simulators/"^^ . . "https://raid.org/"^^ . . . . . . "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena"^^ . . . . . "false"^^ . . . "cessda.cessdapersistentidentifiertypes" . "Marc Hanauer" . . . . . "ontology" . "nikkaji" . "loc.datatype" . "Human Endogenous Retrovirus Database" . "^\\d+$"^^ . "bibliography/documents" . "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_"^^ . . "0000000"^^ . . . . . "0000080"^^ . "realm" . "^\\S+$"^^ . . . . "knapsack" . . . . . "https://ordb.biotech.ttu.edu/ORDB/Data/"^^ . . "https://mycobrowser.epfl.ch/genes/$1"^^ . . "Clinical Trial Registries" . "false"^^ . _:N94571b2f8fcd46cdb30a727e0e7d06a4 "American Medical Association" . . . . . "gene model annotation" . "material science" . "https://purl.org/sms-ontology#"^^ . "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities."^^ . . . . "sweet.propst" . . . "Tri©DB is a newly developed integrated platform functioning as a knowledge base and reporting system for cancer precision medicine. This platform harmonizes and mines cancer-related data from various aspects, presenting them on a centralized platform with enhanced accessibility, rich annotations, and robust analysis capabilities. The development of Tri©DB is aimed at meeting the needs of a broad range of researchers, thereby propelling both foundational and translational research in cancer precision medicine."^^ . . "expression" . "Assembly" . . . . . . . . . "false"^^ . . . _:N8aaaf892331f4402af8ce58256b40b23 . . "false"^^ . . . "http://purl.obolibrary.org/obo/PSDO_$1"^^ . "sstim.ecosystem" . "http://bigg.ucsd.edu/compartments/"^^ . . . . . "DrugBank Metabolite" . "medgen.cid" . . . . "http://www.w3.org/ns/hydra/core#"^^ . "sweet.relm" . "annotation" . "true"^^ . "^[0-9a-f\\-]+$"^^ . "geographic location" . . . "ecosystem science" . . "phenomena" . "toxicology" . "^\\d+$"^^ . "sequence annotation" . . . . . "Sweet Potato Ontology" . . . . . "false"^^ . . . . . "false"^^ . . . . . "^[A-Za-z_0-9]+$"^^ . . "^\\d{7}$"^^ . "https://www.ebi.ac.uk/pdbsum/$1"^^ . "license" . . . . . "sopropb" . . "http://www.wikipathways.org/instance/$1"^^ . . "chemical entity" . . "https://data.chembiosys.de/assays/"^^ . . . . . . "mathalgodb" . . . "Yeast-cell-cycle-Irons-J-Theor-Biol-2009"^^ . "^\\d+$"^^ . "3905431"^^ . . "earthcube.srt" . "organism-specific databases" . . "false"^^ . . . . "life cycle stage" . "13"^^ . . . . . "https://drks.de/search/en/trial/$1"^^ . . . . . . "Ensembl Bacteria" . . . "https://vocabularies.cessda.eu/vocabulary/TimeMethod?lang=en#code_$1"^^ . . . . . "sorepsg" . "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."^^ . . . "Unified Code for Units of Measure" . "life cycle stage" . . "SAREF4MARI is an extension of SAREF for the maritime domain."^^ . . "cell line" . . "ontology" . . "bibliography/documents" . . "FluidEquilibriumState"^^ . "ChiCTR2300070727"^^ . "http://ecmdb.ca/compounds/$1"^^ . . . "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Law"^^ . "ontology" . . . . . . . "Virtual Contact File" . . "ToxoDB" . . . . "https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"^^ . . "ENVO" . . "1"^^ . . "biochemistry" . . "pmid" . . "https://purls.helmholtz-metadaten.de/"^^ . "biomedical science" . . . . "sostrr" . "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt."^^ . . "WormBase" . . "pseudogene" . . . . "ILX" . "http://ctdbase.org/detail.go?type=disease&db=MESH&acc="^^ . "Publishing Roles Ontology" . . "enzyme" . . . . . . "bioinformatics" . "md.tyers@umontreal.ca" . "FuncBase Fly" . . "4623"^^ . "structure" . . . "An ontology to standardize research output of nutritional epidemiologic studies."^^ . "bone element" . . "metadata" . . . "life sciences, biology" . "false"^^ . . . "15"^^ . . . . . . . . . . "Leszek@missouri.edu" . "Torsten Schwede" . "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id="^^ . "health science" . "soprope" . . . "false"^^ . "genome annotation" . "SchultzN@mskcc.org" . . . . . . . . . _:N042b679defec4af38d13de3950cd8f2c . . "false"^^ . . . "gene" . . . "gene" . . . . "google.scholar" . "https://bioregistry.io/dashr.expression:"^^ . . . . "http://purl.obolibrary.org/obo/HAO_$1"^^ . . "ac" . . . "repository" . . "realm" . . "Golm Metabolome Database Reference Substance" . "https://nanocommons.github.io/identifiers/registry#$1"^^ . . . . "http://iot.uni-trier.de/FTOnto#"^^ . . "https://saref.etsi.org/saref4mari/"^^ . . . . . "classification" . . . . "obo" . . . . . "http://www.w3.org/ns/csvw#"^^ . . . . "90801"^^ . "DevTox" . "An identifier for an organization"^^ . . . . "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC."^^ . . . . "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature."^^ . . "http://purl.org/spar/cito/$1"^^ . . . "organism-specific databases" . "^rs\\d+$"^^ . "gene functional annotation" . . . . . "preclinical studies" . . "genome" . . "BERD@NFDI Collection" . . . . "gene" . "https://github.com/semanticchemistry/semanticchemistry" . "false"^^ . . . . . . "false"^^ . "Ontology of rat strains"^^ . "http://sweetontology.net/reprSciMethodology/"^^ . . "http://purl.obolibrary.org/obo/PR_"^^ . "SWEET Ontology Representation Scientific Component" . . "phenomena" . . "false"^^ . "exposure" . _:N092ac3ba259b4ccfa029ea6050b4b9fd . "0000021"^^ . . "ArithmeticMean"^^ . . . "reaction" . . "https://www.scopus.com/affil/profile.uri?afid="^^ . . . . . "environment" . "sequence alignment" . . . . . . "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions."^^ . . . . "identifier of a book in Dialnet"^^ . "Angle"^^ . . . . . . . . "^[A-Z_a-z]+$"^^ . . . . . . "phenotype" . "ontology" . "developmental biology" . . "http://vocabularies.bridgedb.org/ops#$1"^^ . . . "http://purl.bioontology.org/ontology/HOIP/HOIP_$1"^^ . "Sickle Cell Disease Ontology" . "http://rna.rega.kuleuven.be/rnamods/rnashow.pl?"^^ . "ontology" . "approved drug" . . "IHO World Seas" . . "pathway" . "BiGG Model" . "https://hdl.handle.net/hdl:20.500.12582/$1"^^ . "false"^^ . . . . . "47419"^^ . "small molecule" . . "has resolver formatter" . "rna" . "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database."^^ . . . "storedb" . "https://bioregistry.io/diseasesdb:"^^ . . "sweet.prop" . . "false"^^ . "https://embryology.med.unsw.edu.au/embryology/index.php/Carnegie_Stages#Stage_$1"^^ . . . "56586"^^ . . "General Multilingual Environmental Thesaurus Relation" . "protein" . . . "protease cleavage" . . "C34"^^ . . "chemistry" . . . "taxonomy" . "kit.mtxx" . "chemical structure" . . . "fishbase" . . . . . "engineering" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Chemical"^^ . . . . . . "mycobank" . "The Thesaurus of Geographic Names (TGN) is a terminology that focuses on places relevant to art, architecture, and related disciplines, recording names, relationships, place types, dates, notes, and coordinates for current and historical cities, nations, empires, archaeological sites, lost settlements, and physical features. The TGN is one of 5 Getty Vocabularies intended to provide terminology and other information about the objects, artists, concepts, and places important to various disciplines that specialize in art, architecture, and other material culture."^^ . . "false"^^ . . . "api" . . . . "phenotype" . . . "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" . . "https://vocabularies.cessda.eu/vocabulary/TypeOfFrequency?lang=en#code_"^^ . . . "3hB06"^^ . . . "Digital Reference" . . "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology"^^ . "eugenes" . . "assay" . . "http://w3id.org/nfdi4ing/pro-research#$1"^^ . "biomedical science" . . . "fly lines" . "disease" . . . . "http://purl.obolibrary.org/obo/TGMA_$1"^^ . . "uniprot.chain" . . . . "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1"^^ . . "Joanne Kamens" . "false"^^ . "http://www.loc.gov/premis/rdf/v3/"^^ . . "false"^^ . "secondary protein structure" . "http://uri.gbv.de/terminology/datacite-contributortype/$1"^^ . "false"^^ . . . "https://bioregistry.io/imgt.primerdb:"^^ . "TP53"^^ . . . . . "daml.pt" . "ASTD" . . . "ror" . "identifier in BugGuide.net"^^ . . . . . . "sequence" . . . . . . . . "http://sweetontology.net/matrAerosol/$1"^^ . "The pre-IND tracking number for submissions to the FDA"^^ . . . "TP53-47"^^ . "cheminf" . . . . "https://polbase.neb.com/polymerases/$1#sequences"^^ . "cytogenetic map" . "obo" . "model organisms" . "https://www.pombase.org/gene/"^^ . "cognition" . . . "sorepdsv" . . "PharmGKB pathway" . "^(CE[0-9]{5}|WB[A-Z][a-z]+\\d+)$"^^ . "AgentIdentifierScheme"^^ . . "https://www.sharkipedia.org/traits/$1"^^ . . . "Units in OBOE"^^ . . . "false"^^ . "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1"^^ . . "group_of_persons"^^ . "sweet.hukd" . "http://getentry.ddbj.nig.ac.jp/getentry/dad/"^^ . "homd.taxon" . "enzyme" . . . . "Study inside StoreDB at University of Cambridge"^^ . . . . . "taxonomy" . "SNOMEDCTCT_2019_03_01" . . . . . . . "drug-drug interactions" . . "MolBiC Protein" . . "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA)."^^ . . . . . "Potato Ontology" . . "0000004"^^ . "false"^^ . . "protein" . "genome" . . "bioinformatics" . . "false"^^ . "^\\d+$"^^ . . . . "http://www.w3.org/ns/locn#$1"^^ . . "David Brodbelt" . . . . . . "http://purl.obolibrary.org/obo/OMP_"^^ . "SWEET Ontology Property Space Distance" . "false"^^ . . "rna-seq assay" . . "^\\d+$"^^ . "^\\d+$"^^ . "ontology" . "gene" . "developmental biology" . "alzheimer's disease" . "https://www.langual.org/langual_thesaurus.asp?termid=$1"^^ . . "gold standard" . "Mid-level Energy Ontology" . . "false"^^ . "CNBG_0001"^^ . "1018"^^ . "nextprot" . "nfdi-matwerk" . . . . "Gmelin's Handbook of Inorganic Chemistry" . "The NINDS Human Cell and Data Repository (NHCDR) provides access to fibroblast and/or induced pluripotent stem cell (iPSC) lines for a number neurological disorders within the NINDS mission as well as healthy controls. NHCDR also supports access to unique iPSC collections from NeuroLINCS, PDBP, LEFFTDS and Target ALS with associated metadata. A GMP-grade iPSC line and corresponding research grade iPSC line are also available through the NHCDR."^^ . . "Alison Booth" . "One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]"^^ . "Sustainable Development Goals Interface Ontology" . . . . . . _:Ndc33bf2131bf477ba6cc072415e04761 "John Wieczorek" . "mirna" . . . . . "paced breathing" . . . . . . "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid="^^ . "false"^^ . "0003463"^^ . . . . . "AnVIL DRS" . . . "civic" . . "false"^^ . . . . . "http://metlin.scripps.edu/metabo_info.php?molid="^^ . "Brain Architecture Knowledge Management System Neuroanatomical Ontology" . . "false"^^ . "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1"^^ . . . . . "https://bioregistry.io/abcam:"^^ . "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1"^^ . "false"^^ . . "computational biology" . "chembl.tissue" . . "https://www.iana.org/assignments/media-types/$1"^^ . . . . "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-"^^ . . "protein domain" . . "px" . . . "Publishing Workflow Ontology" . . "International Nucleotide Sequence Database Collaboration (INSDC) Run" . . "The base ontology of the ABCD Standard."^^ . . "https://w3id.org/dfgfo/2020/$1"^^ . "electromagnetic" . "false"^^ . . . "health/disease" . . "false"^^ . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast."^^ . . "Human BioMolecular Atlas Program Collection" . . "experimental measurement" . "LIDO Terminology Resource Representation Type" . . . . "Environmental Molecular Sciences Laboratory Project" . . "mass spectrum" . . "false"^^ . . . "iirds.mch" . "https://dialnet.unirioja.es/servlet/revista?codigo="^^ . "absd" . "false"^^ . "sweet.hut" . . . . . . . . . . "false"^^ . "Influenza Sequence and Epitope Database" . "^\\d+$"^^ . "167047"^^ . . . . . . "obo" . "Bjoern Peters" . . "pathogen" . . . "FAIRMD Lipids Databank is a community-driven catalogue containing atomistic molecular dynamics (MD) simulations of biologically relevant lipid membranes emerging from the NMRlipids open collaboration. It improves the Findability, Accessibility, Interoperability, and Reuse (FAIR) of MD simulation data using an overlay databank structure."^^ . . _:N16a691ed839f421aa40322abee342eb9 . "^\\d{7,}$"^^ . "phenotype" . . . "anatomy" . . . . "structure" . . "https://www.synapse.org/Synapse:syn"^^ . "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them."^^ . . . . . "life cycle stage" . . "Dictyostelium discoideum phenotype ontology" . . "http://sweetontology.net/prop/$1"^^ . "bibliometrics" . "preclinical studies" . . . . "nist.codata" . . . . "culture" . . . . . "taxonomy" . "dclunie@dclunie.com" . . . . "false"^^ . "ontorxn" . . "earth sciences" . "true"^^ . . . . "hisco" . . . . "Identifiers for hardware used in experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . "https://www.brenda-enzymes.org/php/result_flat.php4?ecno="^^ . . "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world."^^ . "hasOpenAccessRating"^^ . . "ontology" . "http://www.ecogene.org/gene/$1"^^ . "https://www.w3.org/2022/wot/tm#$1"^^ . . . "https://oid-base.com/get/"^^ . "time frequency" . . . . . . . "nfdi4chem" . . "genome/gene" . "http://id.loc.gov/vocabulary/mvidformat/"^^ . . "2649230"^^ . . . . "computational biology" . . . . . . . "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules."^^ . . . . . "http://search.sisuproject.fi/#/variant/"^^ . . "0004"^^ . "bmont" . . "annotation" . . "BG11523"^^ . . "transport and kinetic data" . . . "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY|UPS)\\d+$"^^ . "evorao" . . . "life science" . "https://www.internationalgenome.org/data-portal/sample/"^^ . "http://purl.obolibrary.org/obo/MSIO_$1"^^ . . . "http://substrate.burnham.org/protein/annotation/$1/html"^^ . . "1351341"^^ . "http://sweetontology.net/propDifference/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Tectonic"^^ . . . . . . . . "habronattus" . . . . . . . . "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards."^^ . "stem cell" . _:N609fca27563d4b64a8d441bc8bdd6837 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information."^^ . "Daniel Marschall" . . "NEPOMUK Contact Ontology" . "scopus" . . "life sciences, biology" . "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration."^^ . . . . . "disease" . . . . . . "OMIA variants" . . . "Vertebrate Breed Ontology" . . . . . . . . "SubtiWiki" . . . "https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id="^^ . "rtecs" . "https://repeatsdb.org/structure/"^^ . . . . . . "umls" . "AP011135"^^ . . . . "false"^^ . "Since the introduction of ISO 639-3 in 2007, access to language information has increased tremendously. The code set initially adopted as ISO639-3:2007 was based on a harmonization of ISO 639-2 with the code set of SIL’s Ethnologue 15th edition and languages from Linguist List to form a comprehensive set of code elements for world languages. SIL International, the Language Coding Agency for 639-3, relies on the contributions of linguists, language coding experts, and language users around the world to maintain and improve the code set through the change request process defined in the ISO 639 standard. [from homepage]"^^ . . . . . "anatomy" . . . . "rdf" . "FBgn0011293"^^ . "chemistry" . . "SWEET Ontology Property Mass" . "377550"^^ . "rnaloops" . . "state role geographic" . "Relator terms and their associated codes designate the relationship between an agent and a bibliographic resource."^^ . "sophatmol" . "category"^^ . . "SWEET Ontology Material Mineral" . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Basin"^^ . "^\\d+$"^^ . . . . . "pmc" . "http://sweetontology.net/matrRock/"^^ . "RPCEC00000423"^^ . "https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"^^ . "medicine" . . . . "true"^^ . . . . . . . "genome annotation" . . . "spd" . "Contributor Roles Taxonomy" . "biomarker" . . "https://metazoa.ensembl.org/id/"^^ . . . . . "qtl" . "cco" . . . "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id="^^ . "https://www.pharmgkb.org/variant/$1"^^ . "^SD\\d+$"^^ . "Shuichi Kawashima" . . . "true"^^ . "deoxyribonucleic acid" . "sostst" . . "radiology" . . . "Oryzabase Gene" . . . . . . . . . "Ontology for genetic interval" . . . . . . . "units" . . "^MGYA\\d+$"^^ . . . . . . "materials" . . "^\\d{7}$"^^ . . "bykdb" . . . "^A\\d+$"^^ . "^[A-Za-z_]+$"^^ . "admin@envipath.org" . . . . "false"^^ . "ontology" . . . . "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . . . "data visualization" . . . . "life science" . . "https://www.inaturalist.org/users/$1"^^ . "false"^^ . . . "0000054"^^ . . . . . "image/movie" . "life science" . . . . "SWEET Ontology Phenomena Atmosphere Sky" . . "ATCC(dna)" . . . . . "Ribocentre" . . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena."^^ . "Yeast Deletion and the Mitochondrial Proteomics Project" . . "nfdi4chem" . "^\\d{7}$"^^ . . . . . "ontology" . . "false"^^ . . . . . . "gene expression" . . . . . "Stefan Schulz" . "ontology" . . "nuclear magnetic resonance spectroscopy" . "long non-coding ribonucleic acid" . . "https://search.clinicalgenome.org/CCID:$1"^^ . . . "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" . "sequence" . "nfdi4chem" . . . "https://www.ebi.ac.uk/ega/studies/$1"^^ . . . . "ontology" . "region" . "^(\\d|\\w)+-\\d$"^^ . . . . "subject agnostic" . "1050"^^ . . . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)"^^ . _:Naa05587a90ac481cb05cfe40d728c4ae "Patrick Le Bœuf" . . "^\\d+$"^^ . "ICDO" . . . "datacite" . . . . . "ontology" . . . . . . "^\\d+$"^^ . . . "metanetx.chemical" . . "https://osdr.nasa.gov/bio/repo/data/payloads/$1"^^ . . "alex.skrenchuk@stanford.edu" . . . "public health" . . "^\\d+$"^^ . . "kegg.environ" . . "biobank" . . . . . "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"."^^ . . "protein" . . . "false"^^ . . "MSBNK-IPB_Halle-PB000166"^^ . . "rubygems" . "multiple sequence alignment" . "PPJ_100024"^^ . "SWEET Ontology Representation Space Reference System" . . "false"^^ . "4214"^^ . "RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project"^^ . "interaction/pathway" . . "earth sciences" . . . "0000091"^^ . . "antibodies" . "registry" . . "SWEET Ontology Property Pressure" . . "https://cryptodb.org/cryptodb/app/record/gene/"^^ . "GWAS Central Marker" . . "miRBase pre-miRNA" . "organism" . "Ontology for Nutritional Studies" . . "^[a-z][a-z]/[0-9]+$"^^ . "UM-BBD_ruleID" . . "ontology" . . . "ess" . . . "arrayexpress" . . "9001411"^^ . "fid move" . "mro" . . _:Nef31aff4fcb548afa74996bc469528c8 "GenBank Support" . . . "https://dblp.org/rdf/schema#$1"^^ . . . . . . . . . . "binary" . . "SP_DI" . "Alan Bridge" . "gmd" . "hso" . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid="^^ . "https://nobias-project.eu/nobias/"^^ . . "Gemeinsame Normdatei" . "ECU03_0820i"^^ . . "10.1038/s41597-022-01807-3"^^ . . "digital planning and construction" . "The AntiBody Sequence Database is a public dataset for antibody sequence data. It provides unique identifiers for antibody sequences, including both immunoglobulin and single-chain variable fragment sequences. These are are critical for immunological studies, and allows users to search and retrieve antibody sequences based on sequence similarity and specificity, and other biological properties."^^ . . . "unique identifiers" . "Radiation Biology Ontology" . "false"^^ . "expression data" . "disease" . "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1"^^ . . "3"^^ . . "s4lift" . . . . . . . . "https://bioregistry.io/gabi:"^^ . . . . "rare disorder" . . "protein" . "00000180"^^ . . "false"^^ . "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . . "star" . "gene name" . "Regulation of Transcription"^^ . . . . . . . . "dna" . "EY223054.1"^^ . . "goeco" . "https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/"^^ . "nasaosdr.payload" . . . "http://arabidopsis.info/StockInfo?NASC_id="^^ . . "CFo000000197"^^ . "psychology" . "TA14985"^^ . . . "278"^^ . . . . "Wiktionary" . "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies."^^ . "This is a relational database of information about hemoglobin variants and mutations that cause thalassemia."^^ . . "^\\d+$"^^ . . "http://id.loc.gov/vocabulary/"^^ . . "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" . . . . "Jingshan Huang" . . . "streptomedb" . "sequence annotation" . . . . . . . "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . . . "biomedical science" . . "nfdi4ing" . . "false"^^ . "drug metabolism" . "ontology" . . . . . "ontology" . . . . . . . . . "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein."^^ . "953"^^ . . "chembiosys" . "signaling-gateway" . . . . . . "ArrayExpress Platform" . . "scopus.eid" . "The Graphic Descriptor Ontology (GDO) is intended for use in describing graphics that represent the form of objects. It uses the language of visual communication, illustration, and technical drawing. The GDO is rooted in the Basic Formal Ontology (BFO) and uses several classes from the Information Entity Ontology of the Common Core Ontologies as a mid-level ontology. [from https://gdo.endlessforms.info/about]"^^ . . . . . "John Darrell Van Horn" . . "https://ogp.me/ns#"^^ . . . . . . "pesticides" . "life science" . . . "Peroxibase" . "cdna/est" . "umbbd" . "false"^^ . "Data types in REX research" . . . . . "co_356" . . . "PXD000440"^^ . "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$"^^ . . . . "false"^^ . "https://chemprosquare.idrblab.net/data/competitor/details/"^^ . "^\\d{7}$"^^ . "Allotrope quality" . . "http://sweetontology.net/phenReaction/"^^ . . "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem."^^ . "pseudogene.org" . . "tno.eo" . . . . . . "^\\d{7}$"^^ . "dna sequence" . . . "https://bioregistry.io/resolve/github/issue/$1"^^ . "https://smid-db.org/smid/$1"^^ . "traffic engineering" . "SWEET Ontology Representation Data Model" . "This vocabulary was created in the FOAF project, based on experience with FOAF, Dublin Core and other early RDF vocabularies. Deployment experience shows that changing namespace URIs is expensive and unrewarding, so this vocabulary provides terms to support in-place evolution of structured data vocabularies. By indicating status at the level of terms rather than vocabularies, dictionary-style, fine grained improvements become easier. Different organizations and parties can agree or disagree on the status of a vocabulary term; however the status published alongside the term may deserve special attention. Future work could include patterns for citing announcements and decisions, or using SKOS to decentralise the extension of the basic status levels. (from artifact)"^^ . . "sopropst" . . "true"^^ . "Protein Structural Change Database" . . "An ontology for describing software components, including their metadata (attribution, licensing, usage instructions, how to get support) and their inputs, outputs and variables. The ontology extends schema.org and codemeta vocabularies and is based on OntoSoft, which proposed a vocabulary for describing software by asking scientists questions."^^ . . "cto" . . "nucleic acid" . "https://www.uniprot.org/database/$1"^^ . "Guide to Pharmacology Target" . . . "trans" . . "Yeast Intron Database v4.3" . . "^[0-9][A-Za-z0-9]{3}$"^^ . "taxonomy" . "^\\d+$"^^ . . "HIT000195363"^^ . . "^\\d+$"^^ . . . . "false"^^ . "mit"^^ . . "false"^^ . . . "gene expression" . "human" . . . . "^D\\d+$"^^ . . "disorder" . "genetic interaction (sensu unexpected)" . "agriculture" . . . . . "matrixdb" . _:Nd423fb73e2034d1ca45d81f71abf9f6b . "Software Ontology" . . . "genetics" . . . "loc" . . "https://datalab.rwth-aachen.de/MINDER/resource/$1"^^ . "http://www.alzgene.org/geneoverview.asp?geneid="^^ . "life science" . "w3" . . . . . . . . "SeaDataNet device categories" . "https://w3id.org/sstim#"^^ . . "https://bioregistry.io/bmbf.glossary:"^^ . . "metabolites" . "microbiome" . . . . "^[A-Za-z][A-Za-z0-9]*$"^^ . . "units" . "1000000"^^ . "http://purl.obolibrary.org/obo/CHR_$1"^^ . . "donny@polyneme.xyz" . . . . . "Database of Spatially Interacting Motifs in Proteins" . . "Database of Arabidopsis Transcription Factors" . . . "SAREF extension for Smart City" . "Karen.Christie@jax.org" . . . "ontology" . . . "cdcode" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Coordinate"^^ . "^\\d{6}$"^^ . "https://bmrb.io/data_library/summary/index.php?bmrbId=$1"^^ . "sweet.procsc" . . "Authorea author" . "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales."^^ . . . "microbes" . . . . . . . . . _:N12c055e7c3b8412e8e3a60078972780d "d.fichtmueller@bgbm.org" . "engineering" . "The SPARC Data Repository Service (DRS) is an implementation of the Global Alliance for Genomics and Health (GA4GH) DRS specification that provides a standardized API that enables researchers and other data consumers to access and retrieve data objects from various data repositories in a consistent and cloud-agnostic way. This implementation provides information for data objects in the SPARC repository (sparc.science)."^^ . . "IUPAC Compendium of Analytical Nomenclature (Orange Book)" . . "soreaab" . "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output."^^ . "Key Performance Indicator ontology" . . . "physiology" . "An _gentle_ implementation of the Unified Foundational Ontology (UFO), which is an upper level ontology like BFO that is concerned with e.g. expressing temporal relationships between events."^^ . "material science" . . . . "cordis.basis" . . . . . "environmental science" . . . . "https://services.scicrunch.io/sparc/drs/v1/package/$1"^^ . "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data"^^ . . "diagnosis" . . "http://qudt.org/schema/qudt#$1"^^ . . . "Comprehensive reference information for the world's languages, especially the lesser known languages. [from homepage]"^^ . "^\\d{8}$"^^ . . . "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . . . . . . "false"^^ . "ontology" . "educational resources" . . "^[a-z0-9\\-]+$"^^ . . "wiley"^^ . . "neuron" . . . . "DDB0016567"^^ . "DockerHub User" . . "immunology" . "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology."^^ . . "NIF Gross Anatomy" . . "umls.sty" . . . . . . "^\\d{8}$"^^ . "GWAS Central Phenotype" . "true"^^ . . . "https://deims.org/dataset/"^^ . "mass spectrometry assay" . "comparative genomics" . "Semantic Web Context" . . . "social science" . "HL7 V3 Code System" . . "R00100"^^ . "The aim of lemon is to provide rich linguistic grounding for ontologies. Rich linguistic grounding includes the representation of morphological and syntactic properties of lexical entries as well as the syntax-semantics interface, i.e. the meaning of these lexical entries with respect to an ontology or vocabulary. [homepage]"^^ . _:N6d9270660ec941fda4d2c371c151b789 "Rafael Gonçalves" . . "false"^^ . . . . "CHEMBL3559721"^^ . "ontology" . "image" . . . . . "false"^^ . "http://sweetontology.net/proc/"^^ . . "false"^^ . . "gerhard.mayer@rub.de" . . . . . . "bcio" . "realmGeol/GeologicFeature"^^ . "Active Animals Ontology" . "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."^^ . . . . . "LINCS Small Molecule" . "https://www.webelements.com/"^^ . . "plant phenotypes and traits" . "00573"^^ . "cdna/est" . "Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites."^^ . . "aclum@lbl.gov" . "expression data" . . . . _:N17c56b4f1ee04357b6ef1fa9328f99e8 "SEP developers" . "brettolivier@gmail.com" . . . "https://vocabularies.cessda.eu/vocabulary/TopicClassification?lang=en#code_$1"^^ . "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1"^^ . "agronomy" . . . . . . "U49845"^^ . "NXPFA" . . . . . . "planetary climate" . . . "https://www.ncbi.nlm.nih.gov/snp/"^^ . . "https://bioregistry.io/mesh.2013:"^^ . . . . . "070886"^^ . . . . "protein" . . . . . . "PMID" . . . "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes."^^ . "SWEET Ontology Property Space Height" . "Structural Database of Allergenic Proteins" . . . "Methods"^^ . "https://data.terra.bio/ga4gh/drs/v1/objects/"^^ . "ess" . . "AADB12"^^ . . "P00024"^^ . . . . . . . . . "Kristin D. Kasschau" . . "blastrule" . "biomedical science" . . . . . "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element."^^ . . . . . "crowdsourcing" . "false"^^ . . . "glycomedb" . . "false"^^ . . . . . "3dmet" . . . . "false"^^ . "75121530"^^ . . . "KEGG gene" . . . . "molecule" . "Paleobiology Database" . "TreeHub is a taxonomical database for trees. TreeHub contains extracted phylogenetic data and integrates relevant species information for each identifier."^^ . "Cell line databases/resources"^^ . . . "https://w3id.org/iliad/oim/$1"^^ . "false"^^ . "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:"^^ . . . . "https://www.flymine.org/come/entry?gn=$1"^^ . . . . . . . . . "genomics" . "false"^^ . "j.a.moore@dundee.ac.uk" . . . . "life science" . "^fdd\\d+$"^^ . . . "AJ Ireland" . "https://www.kew.org/data/grasses-db/www/"^^ . . . "0000947"^^ . "https://go.drugbank.com/metabolites/"^^ . . . "DragonDB Locus" . . "life sciences, biology" . . "CHEMBL465070"^^ . "expression data" . . "GR_GENE" . "http://sweetontology.net/relaSci/"^^ . "UniProt Keywords" . . . . "prefLabelGVP"^^ . . . . "false"^^ . "chemistry" . . . . "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies."^^ . "false"^^ . "1"^^ . "idoo" . . . . . . . "UMLS_CUI" . "hemolytic peptides" . . . . . "biology" . . . . "false"^^ . . . "plastid" . . "false"^^ . . "protein interactions" . "https://www.ebi.ac.uk/ols4/ontologies/nmrcv/terms?curie=NMR:"^^ . . "This ontology describes the car's attributes, branches and signals defined in the Vehicle Signal Specification."^^ . "nmrcv" . "uniprot.tissue" . . "disease" . "apetrov@ebi.ac.uk" . . _:Nfd86c4f71f094ef89e91b494996b223a "pierre.sprumont@unifr.ch" . "^[0-9]+$"^^ . . "biodiversity" . "R00000000000_3"^^ . "life science" . . "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)."^^ . "count" . "material science" . . "false"^^ . . . . "molecular_function" . . . . . . . . "GenBase is a genetic sequence database that accepts user submissions (mRNA, genomic DNAs, ncRNA, or small genomes such as organelles, viruses, plasmids, phages from any organism) and integrates data from INSDC."^^ . . . "genotyping" . "http://purl.obolibrary.org/obo/OBIB_$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Equipment"^^ . . "^\\d+$"^^ . . . . "life science" . . . . . . "whg" . . "https://pharmacodb.ca/cell_lines/"^^ . . . . . . . . . . . . . "sequence annotation" . . . "chemistry" . "rna" . . . . . . . . . . . . "biochemistry" . "https://vietherb.com.vn/species/"^^ . "loc.marcgt" . . . . . . . "http://purl.org/net/orth#"^^ . . . . . "tib.sto" . . "sweet.pho" . "accuracy" . . _:N2e1fc620843048d4ba24076bf8e0ece3 "info@wikidata.org" . _:N381c58b6249b4b41908ba18e816edc24 "f.nawar@cgiar.org" . . _:N96932286d34845f09220d9323a95c38b "MedDRA MSSO" . . . "exac.gene" . . "International Traditional Medicine Clinical Trial Registry" . "A subset of Library of Congress (LOC) subject headings"^^ . "GXA Gene" . . . . . . . . "genprop" . . . "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information."^^ . . . "arraymap" . . . . . . "clinical studies" . . . "clinvar.submission" . . . . . . . "https://www.cellbiolabs.com/search?keywords="^^ . "SWEET Ontology Phenomena Atmosphere Front" . . . . . _:Na46d6eb74a5f4c06910d7b8c410841db "William Bug" . . "model organism database" . . "https://reaxys.emolecules.com/cgi-bin/more?vid="^^ . "https://www.wormbase.org/db/seq/protein?name="^^ . . "human" . "mesh" . "http://www.pharmgkb.org/drug/$1"^^ . "genome" . . "Identifier used by the Cancer Chemotherapy National Service Center."^^ . . "147298"^^ . "false"^^ . . . "C. elegans Small Molecule Identifier Database identifier" . "dwudwary@lbl.gov" . . "The ESCO occupations pillar is built on ISCO-08 which serves as its hierarchical structure. ISCO-08 provides the top four levels for the occupations pillar and ESCO occupations are located at level 5 and lower. In ESCO, each occupation is mapped to exactly one ISCO-08 code. [from homepage]"^^ . "health science" . . . "Unimod protein modification database for mass spectrometry" . . "Library of Congress Video Format" . . "riboCIRC" . . . . . "Guide to Pharmacology Ligand" . . . "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG"^^ . . . "nfdixcs" . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs."^^ . "http://www.w3.org/2008/05/skos-xl#$1"^^ . . . "cell" . "Mathematics Subject Classification" . "tissue" . "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"^^ . "E-cyanobacterium Experimental Data" . . . "Online Computer Library Center WorldCat" . "The Pathogen Transmission Ontology describes the transmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles."^^ . . "bgee.family" . . "https://portal.gdc.cancer.gov/cases/"^^ . . . . "mba" . . . "rna-seq assay" . "0000032"^^ . . . "anatomy" . . "https://autoicdapi.com/reference/icd-11/$1"^^ . . . . _:Ne0d50bf2e9544eb289bad56568fe5309 "Natalie L Catlett" . . . . . . "tribain" . . "wasila.dahdul@usd.edu" . "ddi.datetype" . . . "cath" . . "biopax" . "The type of the Description."^^ . "raras" . . . . . "gmd.ref" . "ISRCTN10175490"^^ . . . . . . . . "subject agnostic" . . . . . "ncbigi" . . "false"^^ . "ARCBedrest"^^ . "benjamin.zapilko@gesis.org" . "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"^^ . . "faseb list" . . . "Kristina Fischer" . "InstrumentScientist"^^ . . . . . . "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+"^^ . "ClinVar Submitter" . "amphx" . . . "DRKS00031815"^^ . . . . . . . "dna" . "annotation" . . "aerosol" . "https://cellxgene.cziscience.com/collections/"^^ . . "PROSITE" . . . "demographicTerms"^^ . . . "ontology" . . "54"^^ . "^DIP(\\:)?\\-\\d{1,}[ENXS]$"^^ . "http://purl.org/dcx/lrmi-terms/"^^ . "72ff6ff882ec447f12df018e6183de59"^^ . "chemical structure" . . . . . "OECD TIVA Ontology" . . "Golm Metabolome Database" . . . . . . . . . "false"^^ . "false"^^ . . . . "gene" . "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1"^^ . . . . "^\\d+$"^^ . . "Alicia Clum" . . . "UniProt Chain" . "rat" . . . . . . "BDGP insertion DB" . . "I31.952"^^ . . "https://db.idrblab.net/ttd/data/target/details/"^^ . . . "hcao" . "crowdsourcing" . "0002350"^^ . . _:Nb7369606875946aa9d74582d4e373f61 "Tom Brennan" . "icepo" . . "small molecule" . "7e778d8e789373bb23d8022b911499f6"^^ . "https://civicdb.org/links/gene/"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Binary"^^ . "^\\d{7}$"^^ . "cessda.topicclassification" . . . . . . . "Integrated Microbial Genomes Taxon" . . "protein complex" . . . "life science" . . . . . . "https://bioregistry.io/dbd:"^^ . . "https://www.nfdi.de/wp-content/uploads/2023/12/textplus_logo_RGB.png"^^ . . "https://cropontology.org/rdf/CO_360:$1"^^ . . . "false"^^ . . . "https://skm.nib.si/search/identifiers/$1"^^ . . . "https://ec.europa.eu/info/funding-tenders/opportunities/portal/screen/how-to-participate/org-details/"^^ . "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."^^ . "obo" . "ontology" . "bibliography/documents" . "phenotype" . "TIGRFAMS" . "SWEET Ontology Representation Data Servcie Analysis" . "true"^^ . "https://viralzone.expasy.org/$1"^^ . . . "genome" . "http://www.nematodes.org/nembase4/cluster.php?cluster="^^ . "Sensory Stimulation Ontology Exposure Namespace" . . . "ambystoma" . "^[0-9]+$"^^ . "1443"^^ . "DataCite Contributor Type" . . "smc.bgc" . . . "WikiPathways Ontology" . "Open Citation Identifier" . . . . . . "chemistry" . . "bioresource" . . . . "https://www.uniprot.org/proteomes/"^^ . "repository" . "true"^^ . "histological assay" . . . . . "false"^^ . . "RF00230"^^ . "false"^^ . "PMH0001144"^^ . . "bspo" . . "Omar Harb" . . "http://purl.obolibrary.org/obo/ZFA_$1"^^ . . . "false"^^ . . . _:N749fb74ae1d1472da2e1229f55f3da8b "futo@stanford.edu" . "protein" . . _:Naf5110f7c7574171989f0131a1831cec "Harry Caufield" . . "imedvedeva@celgene.com" . . . . . . . "http://www.pantherdb.org/panther/family.do?clsAccession="^^ . . . . . "Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces."^^ . . . "59"^^ . . . "mmp.db" . . . "yeastract" . . "^MF_\\d+$"^^ . . "chemical entity" . "15997-2"^^ . . . . "Yungang Xu" . . "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id="^^ . "false"^^ . "false"^^ . "metabolite" . _:N9d47075f233d4499a349dc5db7d69dd0 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid="^^ . . "https://smpdb.ca/view/$1"^^ . . . "gro-cpga" . . . . "The type of name."^^ . "saref.water" . _:Nf488503062b74d018d8fc3d077b2a8cc . . "web of things" . . "chemical compound" . . "false"^^ . . "bacterin-toxoid" . . "^TS-\\d+$"^^ . "XML Schema Definition" . . . "Bohlmann Ontology" . "https://autoicdapi.com/reference/icd-11/"^^ . "johannes.wittmann@dsmz.de" . . "00011461"^^ . . . . "true"^^ . . "false"^^ . "interaction/pathway" . "Sebastian Böhm" . . "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:"^^ . . . "cell biology" . . . . . . . . . "NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results)."^^ . . . "Solid OpenID Connect vocabulary" . . "SKOS Thesaurus Extension" . . . "https://mycobrowser.epfl.ch/genes/"^^ . . . "ontology" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Speed"^^ . "25011"^^ . "gene" . "biospecimen" . . . . . . . . "false"^^ . . . "SARGON (SmArt eneRGy dOmain oNtology) is an open-source effort to define semantic descriptions of the smart assets in building automation and smart grid and the relationships between them. SARGON consists of an extensible dictionary of terms and concepts in and around building and smart grid, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of SARGON with existing tools and databases. Through the use of powerful Semantic Web technology, SARGON can describe the broad set of Devices and custom features, assets and subsystems found across the building stock in a consistent matter."^^ . "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Allele"^^ . . "biomedical science" . "false"^^ . . . "false"^^ . "https://gpo.ontology.link/GPO_"^^ . . "obo" . . . "false"^^ . "Archaea"^^ . . . . "data classification" . . "UniProt" . "740"^^ . . "false"^^ . . "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$"^^ . "classification" . "taxonomic classification" . "https://dblp.org/rdf/schema#"^^ . . . "ontome" . "anatomy" . . . "translational medicine" . "Tb927.8.620"^^ . "^\\d{7}$"^^ . . . _:Ndb5a47dcb9e0480eb4e3e523eee544e0 "admin@admin.com" . . "drug" . . . . "false"^^ . . . "metaproteomics" . "A vocabulary service for the social sciences, covering the Data Documentation Initiative (DDI) is an international standard for describing data produced by surveys and other observational methods in the social, behavioural, economic, and health sciences."^^ . "Compluyeast-2D-DB" . "Etsuko Yasugi" . . "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf="^^ . "http://bimerr.iot.linkeddata.es/def/information-objects#$1"^^ . . . "peptide" . . . "PubChem-substance" . . "SUPERFAMILY" . . "http://terminology.lido-schema.org/termMaterialsTech_type/"^^ . . . . "Minimal set of terms for anatomy."^^ . . . . "bibliography/documents" . "genetic polymorphism" . "gene" . . "Suzi Aleksander" . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc."^^ . "odc.tbi" . "http://www.w3.org/ns/sparql-service-description#"^^ . . . "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1"^^ . "genome/gene" . "http://sweetontology.net/reprMathGraph/"^^ . . . "major histocompatibility complex" . "0000030"^^ . . . . . "false"^^ . . "vo" . . . "https://spec.industrialontologies.org/ontology/$1"^^ . "ontology" . "knowledge representation" . "sweet.propi" . . "false"^^ . "gene" . "RealmConfiguration"^^ . . . "false"^^ . . "Materials Design Ontology - Full" . . . . . . . "The Statistical Methods Ontology" . . . . "https://www.encodeproject.org/"^^ . . . "ribonucleic acid" . . "biochemistry" . . "sweet.propsdis" . . . . . . . "ISO 3166-2 Country Code" . . "environmental impact" . . "n4e" . "ontology" . . "KEGG Compound" . . "ChemBioSys Institution" . "^\\w+$"^^ . . "DRAMP00005"^^ . "structure" . . . . "US4145692"^^ . "https://disprot.org/"^^ . . . . . . "http://func.mshri.on.ca/yeast/genes/list_functional_scores/"^^ . . "orth" . "ontology" . "false"^^ . . . . . . . . "https://biolink.github.io/biolink-model/"^^ . "https://bartoc.org/en/node/"^^ . "enzymatic reaction" . . . . . . "taxonomy" . "epidemiology" . . . "0000001"^^ . "tissue" . . . . "false"^^ . . . . "miriam.resource" . . . . . . "^[A-Za-z_0-9]+$"^^ . "false"^^ . . "false"^^ . "infectious" . "Mitja M. Zdouc" . "primer" . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Oceanic"^^ . "differential protein expression profiling" . "2011488555"^^ . . "Describes the level of proficiency of an individual in a natural language."^^ . "mirna" . "Biological Imaging Methods Ontology" . "fdb8a927-45c3-48b7-9743-cbb5e16837fa"^^ . "Identifiers correspond to literature references for molecular glue studies in the MGTbind database."^^ . "tib.ifc" . . . "The quality component of the Allotrope ontology suite"^^ . "skosmos" . . "^\\d{7,8}$"^^ . "false"^^ . . . "virology" . . "European Mouse Mutant Archive" . . "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references."^^ . . "ontology" . . "ocid" . . . "civic" . "ubio.namebank" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Dynamics"^^ . "http://erop.inbi.ras.ru/result2.php?PepName=$1"^^ . "ontology/terminology/nomenclature" . . . "sorepsp" . . "adriano.rutz@ik.me" . . "hsa-mir-200a"^^ . . . "50885"^^ . . . . . . "http://www.unimod.org/modifications_view.php?editid1=$1"^^ . "https://www.phosphosite.org/curatedInfoAction.action?record=$1"^^ . . "https://identifiers.org/$1:$2" . . . . . . "3d structure" . . "^\\d+$"^^ . "004d64e9-a7ab-4a73-b117-0c6fc6c76d81"^^ . . . . . . . "mirbase" . . . . . . "NCI_Thesaurus" . . . . "MaizeGDB is the maize research community's central repository for genetics and genomics information."^^ . . . "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI."^^ . "A hierarchy of the world oceans, seas and sea regions, based on the publication \"Limits of Oceans & Seas, Special Publication No. 23\" (1953) by the International Hydrographic Organization (IHO), extracted from the Shape Files (version 2 [2017]) available on http://www.marineregions.org and provided by Flanders Marine Institute (VLIZ)."^^ . "false"^^ . . . . "transcriptomics" . . . "obo" . . . "false"^^ . "somarocki" . . . . . "false"^^ . . "coypu" . . . "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes."^^ . . . . . . "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_"^^ . "caro" . . . "organism" . . "gold standard" . . _:N303350e101824790a487de1349c5e5b7 "steve.baskauf@vanderbilt.edu" . "xco" . . . "BaseUnit"^^ . "Valerie Wood" . "0000001"^^ . _:Nc94764990da346228a55114ce960109b . . . . . "https://mmp.sfb.uit.no/databases/marref/#/records/$1"^^ . . "false"^^ . "ebisc" . . "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1"^^ . . . "^PRI\\d*$"^^ . "3G6A5W338E"^^ . "false"^^ . "tag" . "ontology/terminology/nomenclature" . "ontology" . "abandrowski@ncmir.ucsd.edu" . . . "ZDB-GENE-041118-11"^^ . "^\\d+$"^^ . "issn" . . "^\\d{6}$"^^ . . "0001191"^^ . "http://sweetontology.net/phenEnvirImpact/"^^ . . . "77"^^ . "PhosphoPoint Phosphoprotein" . . "nando" . . "infection process" . . . "^[SCTAGMNUIXCP]{1,2}\\d{2,3}\\.(([ABP]\\d{2})|\\d{3})$"^^ . . "si.quantities" . . . "genome" . "norine" . "http://rdfs.org/sioc/argument#$1"^^ . "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id="^^ . . . . . . "BallLightning"^^ . "target" . "http://www.humanproteomemap.org/spectrum.php?pep_id="^^ . . . "http://www.narcis.nl/publication/RecordID/"^^ . . "pennsieve" . . . "ontology" . "^\\d+$"^^ . _:Nb40d9510788a406ba8e3cf0e638844fa . . "http://www.kegg.jp/entry/$1"^^ . . "gene expression" . . . "^ISRCTN\\d+$"^^ . "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships."^^ . "http://thebiogrid.org/"^^ . "repository" . . . . "German University Subject Classification System" . . . "fiesta.iot" . . . . "development" . . . . "http://purl.obolibrary.org/obo/MAT_"^^ . . . . . . "https://uts.nlm.nih.gov/uts/umls/vocabulary/MTH/"^^ . "NIF Standard Ontology: Neurolex" . "open source initiative" . "region" . . . . . . . . . "^\\d{7}$"^^ . . "obo" . . . "International Electrotechnical Commission Common Information Model Ontology" . "http://addgene.org/$1"^^ . "ecoliwiki" . . "major histocompatibility complex" . "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML)."^^ . . "ons" . . "researcher" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Line"^^ . "civil engineering" . . . . "pancreatic islet development" . . . "mao" . "\"Terminology of Anatomy of Human Histology\" is a standard, specialising in the fields described under \"scope and data types\", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1535. This text was generated automatically. If you work on the project responsible for \"Terminology of Anatomy of Human Histology\" then please consider helping us by claiming this record and updating it appropriately."^^ . . . . . . "bibliometrics" . . "false"^^ . . . . . "https://w3id.org/iliad/oim/"^^ . . "genetics" . . . . . . . "taxonomic classification" . . . . . "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did="^^ . . . . . "Alexander Wolodkin" . . "webelements" . . . "organism supplier" . "ontology" . . . . "life science" . . "Gene Expression Analysis Resource" . . "ctd" . "https://www.cabi.org/cabebooks/ebook/"^^ . . . "^[A-Z0-9]{4}$"^^ . . "Taxonomic rank vocabulary" . . . "002_xxx_xxx-a228d7e065dc45b4b5ab48876aab7228-vp"^^ . . . "http://sweetontology.net/matrMineral/"^^ . "Ontology of Host Pathogen Interactions" . "Global Research Identifier Database" . . "false"^^ . "evan@epatters.org" . . "chris.overall@ubc.ca" . "https://purls.helmholtz-metadaten.de/$1"^^ . "000260236"^^ . "false"^^ . . . "bpeters@lji.org" . . . "The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)"^^ . . . . . . "engineering" . "MI0026471"^^ . . . . . . . . "^\\d+$"^^ . . . . "bibliography/documents" . "computer science" . "^\\d+$"^^ . . . . "infection process" . "false"^^ . "^\\d{7}$"^^ . . . "http://syndromefinder.ncchd.go.jp/UR-DBMS/SyndromeDetail.php?winid=1&recid=$1"^^ . . "chemical structure" . "MolBiC Compound" . "A list containing the degree of the level of an encoding."^^ . . "Interconnect Unit Ontology" . . "A tag in the ChemBioSys data platform"^^ . "KIAA0001"^^ . . "^\\d(\\d|\\w)$"^^ . . . "An ontology to represent the enhancement of building data throughout the construction lifecycle stages"^^ . "lido.identifier" . "http://ddinter.scbdd.com/ddinter/drug-detail/$1"^^ . . . . . _:N9ee0403cae254e93bcdfb55148d15924 "Qiong Gu" . "https://sed-ml.org/urns.html#format:$1"^^ . . . . "ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al."^^ . . . "http://www.w3.org/ns/shex#"^^ . . . . . "SWEET Ontology Representation Time Season" . "An umbrella scheme to collocate all the preservation vocabularies."^^ . "datasets" . . _:Nfe3372ba42eb4a07920a86c03bd62252 . "chromosome" . . . . . . "^\\d+$"^^ . "cogs@ncbi.nlm.nih.gov" . "false"^^ . . . . "gdsc" . . . "EPA Hazardous Wastes" . . . . . "john.garavelli@ebi.ac.uk" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Geomorphology"^^ . "UK BioBank Category" . "An RDF vocabulary for the taxonomy of all forms of life"^^ . "life cycle" . . . "http://purl.uniprot.org/uniprot/$1"^^ . . . "genetic variation" . "obo" . "application_case"^^ . "JECFA provides identifiers for flavors, food additives, contaminants, toxicants, and veterinary drugs. Each entry includes chemical details, acceptable or tolerable intake limits, and links to related reports and monographs."^^ . "https://bioregistry.io/phosphopoint.protein:"^^ . . . . "sustainability" . . . "false"^^ . "metadata" . "computer science" . . "false"^^ . "Reaxys" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Seismicity"^^ . . "lido.resourcerepresentation" . . . . "System Science of Biological Dynamics dataset" . . "This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from )"^^ . . "citexplore" . . . . "microproteins" . . "https://nfdi4culture.de/ontology/CTO_$1"^^ . "plankton" . . . "CIViC gene" . "false"^^ . "gene name" . "attribution" . "https://opendata.inrae.fr/AHOL/AHOL_"^^ . . "sasbdb" . "Media Types Scheme is derived from a controlled list of coded values representing content types principally used in RDA cataloging."^^ . . "The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records."^^ . "MMP743597.11"^^ . "molecules" . "ddi.softwarepackage" . "true"^^ . "ontology" . "skosmos-server" . . . . . "Database of Genotypes and Phenotypes" . . "interaction" . "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1"^^ . . "research project" . . "ontology" . "^\\w{1,2}\\d{8,10}$"^^ . . . "false"^^ . "AllergenTypeCode-3-AMINOPHENOL"^^ . . . "contributor roles" . "omics" . . . "Taxonomy in DEIMS SDR"^^ . . "Atomistic" . . . . "life science" . . . . "false"^^ . "Ceri Van Slyke" . . "http://leafsnap.com/species/$1/"^^ . "saref" . . . . . . . "The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines). The following designations are used as part of local unique identifiers:\n\n- `PC`: positive control\n- `NC`: negative control\n- `AS`: antiserum\n- `PV`: plant viruses\n- `RT`: recommended test\n- `ACC`: human or animal cell line\n- `DSM`: microorganism cell line"^^ . . "igsn" . "^\\d+$"^^ . "7207"^^ . "https://togoid.dbcls.jp/" . . . . . . . "Bob Thacker" . "Todd M Lowe" . "Drosophila gross anatomy" . . . . . . "functional genomics" . "https://deims.org/locations/"^^ . "Nicolas Maillet" . . . . "false"^^ . "00000001"^^ . "FooDB compound" . "The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants."^^ . "interaction/pathway" . "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively."^^ . . . "taxonomic classification" . . "orthologous" . . "Gramene Taxonomy" . "w.simpson@orcid.org" . . . "Proteomics Identification Database Ontology" . . . . . . "VSAO_RETIRED" . "structure" . . . . . "cohd" . "linguistics" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Visibility"^^ . . "drug report" . . . . "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1"^^ . "umls.mth" . "gene" . "https://precision.fda.gov/uniisearch/srs/unii/$1"^^ . "fetal fibroblast" . . "^DataSet_[0-9]+$"^^ . "foodex2" . "iao" . "true"^^ . . "Access to Biological Collection Data Schema" . "The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)"^^ . . . . . "http://planttfdb.cbi.pku.edu.cn/tf.php?uid="^^ . . "genetic variation" . "false"^^ . . . "Health Surveillance Ontology" . . "https://w3id.org/kim/hochschulfaechersystematik/"^^ . . "International Standard Classification of Education, 2011 Edition" . "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1"^^ . "pruitt@ncbi.nlm.nih.gov" . . . . "Open Tree of Life" . . . . . . "ontology" . . "ontology" . "http://purl.obolibrary.org/obo/MIRO_$1"^^ . . "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1"^^ . . . "lspci" . . . . . . . . "http://purl.obolibrary.org/obo/OHD_"^^ . . . . . "http://sabiork.h-its.org/newSearch?q=ecnumber:"^^ . . "An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io)."^^ . . . . "http://edamontology.org/topic_$1"^^ . . . . . . . . "photographs" . "molbic.cellline" . . "This CV, developed as part of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the data types relevant to the research field. The CV includes data types that can result from a variety of different collection methods. These include, for example, standardised or unstandardised surveys, individual or repeated observations, as well as process-produced or user-generated types of data generation. The data types can be subject-, event-, space- or time-related and refer to the individual or aggregate level."^^ . . . . "0000081"^^ . "false"^^ . . "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity."^^ . . . "http://purl.obolibrary.org/obo/DINTO_"^^ . "obo" . "digital planning and construction" . "hasTaxonomy"^^ . . "http://purl.obolibrary.org/obo/OHPI_$1"^^ . . . . "protein" . . "https://biodivportal.gfbio.org/ontologies/$1" . "phenomena" . . . . "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1"^^ . . . . . . . . "false"^^ . . "chebi" . . . . . "http://purl.obolibrary.org/obo/MF_$1"^^ . "pathway" . . "^acc\\d{4}$"^^ . . . "https://cropontology.org/term/$1:$2" . . . "6376"^^ . . . . . . . "false"^^ . . . "protein" . . . . . "ontology/terminology/nomenclature" . "subject agnostic" . "https://www.ncbi.nlm.nih.gov/nlmcatalog/"^^ . . . . . "ontology" . . . . . . "materials" . . . . . . . "false"^^ . . . "representation space direction" . . "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"^^ . "http://sweetontology.net/humanAgriculture/$1"^^ . "Medscape" . "sioc" . "The Damage Topology Ontology (DOT) allows the definition of damage representations and their relations with other damages and affected construction components. The ontology supports a generic damage modeling approach and therefore could be applied for any type of degradation as well as for any construction type (e.g. buildings or bridges). Damage representations can be modeled either as damaged areas (dot:DamageArea) or elementary damage elements (dot:DamageElement). Thereby, instances of dot:DamageElement should be aggregated in a dot:DamageArea, however significant damages e.g. large cracks could be modelled as dot:DamageElement without dot:DamageArea. For grouping multiple coherent damages, a damage pattern could be defined by using dot:DamagePattern as third type for damage representation. Besides the topological damage classes, damage can also be categorized acording to a certain damage type using subclasses of dot:ClassifiedDamage as defined in extensions of DOT. A division between structural and non-structural damage is made by using the dot:StructuralDamage or dot:Defect classes. In addition to the topology, damage documentation that is commonly created during inspections and damage assessment can be linked to the damages as well as to the damaged components."^^ . . . "The Odysseus dynamic Energy Profile Card (dEPC) Ontology (or the Odysseus \"Energy Ontology\" in short) is an advanced open semantic information structure covering a wide variety of information types relevant for improved (fossil) energy - efficiency and CO2 reduction in city's neighbourhoods. The ontology covers entities like buildings where people perform activities; but also street lighting sections, windmill parks, solar parks etc., all under the required indoor/outdoor climate conditions. (text from https://studyres.com/doc/2789908/odysseus_depc-ontology)"^^ . . . . . . . . . . . "metacyc.compound" . "a.kikhney@embl-hamburg.de" . . "1"^^ . . "protein structure" . "false"^^ . . . . "https://repeatsdb.org/protein/$1"^^ . "true"^^ . . "Identifiers for the protein scaffolds of synthetic binding proteins (SBP), detailing their structural frameworks and roles in facilitating SBP function."^^ . . . . "ontology" . . . "true"^^ . . . . . "cmpo" . "obo" . . . "The choice of the Record Type should take into account both the form or function of a document, an object or work of art, and the goal of the cataloging approach with respect to the logical arrangement of the whole and its parts."^^ . . "false"^^ . . . . "fair data spaces" . . "nsv3875336"^^ . "rdf" . . "uniprot" . . "1174"^^ . . . "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . "PST_100013"^^ . . "Laurel Cooper" . "http://purl.org/spar/pro/"^^ . "42840"^^ . . . . "https://www.datanator.info/gene/"^^ . . "bioschemas_draft" . "Medaka Developmental Stages" . "false"^^ . "civil engineering" . "computer science" . "An ontology describing the anatomical structures and characteristics of Porifera (sponges)"^^ . "registry" . "ontology" . _:Ncb0780b367154acb9b990d47d34acc63 . . . . . . "phenomena" . "molecular interaction" . "Jianfeng Pei" . "^[AEP]-\\w{4}-\\d+$"^^ . "major histocompatibility complex" . "https://openenergyplatform.org/ontology/oeo/OEO_$1"^^ . "protein" . "false"^^ . . . "Kai Blin" . "0e39569d-ff81-4b78-9c34-b07309504d80"^^ . "T30002"^^ . "Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. \nDelivering a comprehensive overview of the world's research output in the fields of science, technology, medicine, social sciences, and arts \nand humanities, Scopus features smart tools to track, analyze and visualize research."^^ . . . . . "sonami@riken.jp" . . "https://phinvads.cdc.gov/vads/ViewCodeSystemConcept.action?oid=2.16.840.1.113883.12.227&code=$1"^^ . "The Scientific Event Ontology (SEO) is a reference ontology for modeling data about scientific events such as conferences, symposioums, and workshops."^^ . "http://www.w3.org/ns/activitystreams#"^^ . "hssp" . "nfdi4cat" . . . . . . "false"^^ . . . . "https://id.loc.gov/authorities/subjects/"^^ . "classification" . "Ensembl" . "http://vita.mbc.nctu.edu.tw/search.php?acc="^^ . . "Software Package Repositories" . "EuroVoc" . "An ontology that enables characterization of the nature or type of citations, both factually and rhetorically."^^ . . . . . . . . "Role Ontology" . . "^\\d{7}$"^^ . "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules."^^ . "irefweb" . . . . "SNHG3"^^ . "wikipathways.gpml" . "identifier for an academic research group issued by the CNRS"^^ . "health/disease" . "http://purl.obolibrary.org/obo/DC_CL_$1"^^ . . . "http://sweetontology.net/reprMathOperation/$1"^^ . . "false"^^ . "http://www.w3.org/ns/odrl/2/$1"^^ . "ontology" . . . . "Research Resource Identification" . . "false"^^ . . . . . "daniel.c.berrios@nasa.gov" . . "https://saref.etsi.org/saref4watr/"^^ . "representation representation scientific methodology" . . . . . . . . "medical imaging" . "jurisdiction" . . "ligand" . "8000221"^^ . . . . . "https://www.phosphosite.org/curatedInfoAction.action?record="^^ . "^\\d+$"^^ . . . . . "ontology" . "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier."^^ . . . "bibliography/documents" . "http://en.wikipedia.org/wiki/"^^ . . . . "HasPart"^^ . "http://sweetontology.net/relaSpace/"^^ . . "false"^^ . "Xenbase" . . . "binding" . . . . "nfdi4ing" . "morbidity" . "sioc" . "ASPL0000349247"^^ . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes."^^ . . "The Hydra Core Vocabulary" . "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"^^ . "pmap.substratedb" . . "https://biosimulators.org/simulators/$1"^^ . . "http://www.proglycprot.org/detail.aspx?ProId=$1"^^ . . . "portal" . . "0005452"^^ . "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information."^^ . . . "janna.hastings@gmail.com" . . . . "Job Dekker" . . . "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." . . . "SBML RDF Vocabulary" . . . "https://saref.etsi.org/saref4ener/"^^ . . "http://uri.neuinfo.org/nif/nifstd/sao"^^ . . "protein" . . . . "https://mobidb.org/"^^ . . . . . . "diseasesdb" . . "https://saref.etsi.org/saref4lift/"^^ . . . "http://vocab.nerc.ac.uk/collection/P06/current/$1"^^ . "expression" . . . "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC="^^ . "googlescholar.paper" . . . . . . "http://purl.org/linked-data/cube#"^^ . . . "^TCTR\\d+$"^^ . "http://multicellds.org/MultiCellDB/"^^ . "microbiology" . . "CL070"^^ . . "life science" . . "false"^^ . "false"^^ . . . . . "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html"^^ . . . "maggot" . . . "Lindsey N. Anderson" . . "state time" . . "genomics" . "ontology" . . "ontology" . "Francesco Vitali" . "atmosphere transport" . . "false"^^ . . . "biocuration" . . . . "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId="^^ . . "false"^^ . . "raras" . . "https://rpcec.sld.cu/en/trials/$1"^^ . . . . "natural language processing" . . "false"^^ . . "2019-08-03_00000089_1"^^ . "fid baudigital" . . . . . "https://rapdb.dna.naro.go.jp/locus/?name=$1"^^ . . "Ismail Fliss" . . "ontology" . . . "http://sweetontology.net/reprSpaceCoordinate/"^^ . . . . . "stewart.cole@epfl.ch" . "drm" . "botany" . . "https://www.ncbi.nlm.nih.gov/clinvar/variation/"^^ . "https://repeatsdb.org/structure/$1"^^ . . . . . . "idog" . . . . . . . "Heike Görzig" . "https://docid.africapidalliance.org/docid/"^^ . . . . "false"^^ . "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1"^^ . . "earth science" . . "grouping" . . "^\\d{7}$"^^ . . "AnimalProduction"^^ . . . . . "sstim.exposure" . . "classification" . "FileObject"^^ . . . "https://www.enzyme-database.org/query.php?ec=$1"^^ . "Numeric"^^ . "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences."^^ . . "http://vocab.nerc.ac.uk/collection/P07/current/$1"^^ . "fair data spaces" . "state biological" . "sorepmfo" . . . . . "Data Quality Vocabulary" . . "http://sweetontology.net/stateRoleRepresentative/"^^ . . . "dna" . . . . "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments."^^ . "https://pb.apf.edu.au/phenbank/strain.html?id=$1"^^ . "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_"^^ . . "^\\d{7}$"^^ . "ontology" . . . . . "false"^^ . . "false"^^ . "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps."^^ . "ontology" . "^TTHERM\\_\\d+$"^^ . . . . "https://modeldb.science/modellist/$1"^^ . . "nfdi4ing" . . "representation data service" . . "nfdi4ing" . . . . "database" . . "AnnualAverage"^^ . . "psipar" . . "uniprot.taxonomy" . "PD000596"^^ . "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made."^^ . . "Stephen Larson" . . "life cycle" . "cameo" . . "https://tree.opentreeoflife.org/taxonomy/browse?id="^^ . _:N32f5c5aa8b784f24a51cac9f83486e75 . . "Jacqueline Campbell" . . "S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix."^^ . "protein-containing complex" . "false"^^ . "true"^^ . . "anatomy" . "ontology" . "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." . . . . "ontoavida" . . "Protein and Associated NucleotideDomains with Inferred Trees" . . "http://uri.neuinfo.org/nif/nifstd/nlx_inv_"^^ . . "https://www.ebi.ac.uk/arrayexpress/experiments/"^^ . "MIRIAM Registry collection" . . "SWEET Ontology Property Energy Flux" . . "false"^^ . . "https://bioregistry.io/odam:"^^ . . . . "false"^^ . "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid="^^ . . . "spinal cord" . "molecular entity" . "Jose Leonardo (Onard) Mejino" . . "PUBCHEM_CID" . "SM0000020"^^ . . "CID" . "Bioregistry" . . "curated information" . . . "vmh.metabolite" . . . "snoDB" . . . "false"^^ . . _:N3401d916e85d4b69a93bfe639d6c1d65 "Gary O'Neall" . . . "business administration" . "ontology" . . . "ontology" . . "dataplant" . . . . . . . "engineering" . . . _:Nb637cfc764f3489199080f6fc6727d03 "NIH Reporter Helpdesk" . . . . "GR:0080039"^^ . . "KG09531"^^ . "http://purl.obolibrary.org/obo/CMO_"^^ . "0000016"^^ . "^\\d{7}$"^^ . . . "model organisms" . "^\\d+$"^^ . . . "An ontology of prokaryotic phenotypic and metabolic characters"^^ . . "f72958f5-7f42-4ebb-98da-445b0c6de516"^^ . . "biobank" . "og" . "0471491039"^^ . . . . . "https://www.pahgncb.com/genomedb/public/genefamily/"^^ . "deborahlehr"^^ . "http://sweetontology.net/phenFluidInstability/$1"^^ . . "InterPro" . "ontology" . "http://purl.obolibrary.org/obo/VTO_"^^ . "sitex" . . . . "https://bioregistry.io/beiresources:"^^ . . . . "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence."^^ . . . . . . . . "Iconclass Classification" . . "System Package Data Exchange" . "Aclame" . . . . . . "SNOMEDCTCT" . . . . . . . "https://vocabularies.cessda.eu/vocabulary/CountryNamesAndCodes?lang=en#code_$1"^^ . . . . "experimental plant" . . "00b51s9rc5"^^ . . "cessda.cessdadatacataloguecollections" . "gramene.taxonomy" . "Birgit Kersten" . . . "1a24"^^ . "sopropfu" . . . . "10798"^^ . . . . . "protein" . "rdf" . "https://lincs.hms.harvard.edu/db/antibodies/$1"^^ . "https://purls.helmholtz-metadaten.de/emg/EMG_$1"^^ . . . "^[A-Z0-9]+$"^^ . "http://purl.obolibrary.org/obo/IOIO_"^^ . . . "UniProt Variants" . "^\\d+$"^^ . "unirule" . . . "^FDB\\d+$"^^ . . "genecards.geneannot" . "fyler" . "http://www.whocc.no/atc_ddd_index/?code=$1"^^ . "ontology" . . . "Ontology for Certificates and crypto stuff."^^ . . . . "civic.mpid" . . . . . . . "ontology" . "spider" . . . . . "morbidity" . "genome" . . "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information."^^ . "This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)"^^ . "http://purl.obolibrary.org/obo/MIRNAO_$1"^^ . "sorelch" . . . . "ontology" . . . . . . "http://uri.neuinfo.org/nif/nifstd/birnlex_"^^ . "functional genomics" . "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences."^^ . "Type of Address" . . . "https://www.ebi.ac.uk/intact/interaction/"^^ . . . "opl" . "false"^^ . . "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."^^ . . . . . "Matthew Brush" . . . . "https://mmp.sfb.uit.no/databases/marfun/#/records/$1"^^ . . . . "53d583d8-40c6-40e1-9296-23f821cd77a5"^^ . . . . . . "Agent"^^ . . "The EMI ontology is used to structure spectrum annotation provenance by reusing the PROV-O ontology (a W3C recommendation) and sample and observation data by applying the SOSA ontology. EMI reuses the SOSA ontology as a data schema for struturing the Sample and Observation data. SOSA (Sensor, Observation, Sample, and Actuator) is a subset of SSN (Semantic Sensor Network Ontology) that is a W3C recommendation. [from homepage]"^^ . "false"^^ . . "https://arxiv.org/abs/$1"^^ . "life cycle" . . . . . . . "obo" . "https://www.ebi.ac.uk/complexportal/complex/"^^ . "false"^^ . "ontology" . "conoserver" . . . . "^\\d+$"^^ . . . "pathway" . "https://pmb-bordeaux.fr/dataexplorer/?ds=$1"^^ . "https://pneumowiki.med.uni-greifswald.de/"^^ . "biospecimen" . "Enrique Blanco" . . "^\\d{7}$"^^ . "The Ontology of units of Measure (OM) 2.0 models concepts and relations important to scientific research. It has a strong focus on units, quantities, measures, and dimensions."^^ . . . "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1"^^ . "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets."^^ . . . "sweet.realg" . . . "https://eds.gene.le.ac.uk/home.php?select_db="^^ . "sequence" . . "DBCOND0066902"^^ . "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types."^^ . . . "false"^^ . "http://drugcentral.org/drugcard/$1"^^ . "https://iso639-3.sil.org/code/$1"^^ . . "research" . "This file contains the Base Ontology of oneM2M as specified in TS-0012"^^ . "ontology" . . . . . . "HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers."^^ . "The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure."^^ . . "false"^^ . . "nfdi4ing" . "gene duplication" . . . "0005067"^^ . . . "cell" . "digitalconstruction" . . . "subject agnostic" . . "yetfasco" . . "obo" . "Maximilian Haeussler" . "^\\d{7}$"^^ . . . . "protein" . "embryo" . "The Protocol for Web Description Resources (POWDER) allows metadata to be associated with groups of resources such as those found on a Web site. Its main 'unit of information' is the Description Resource (DR), one or more of which are contained in a POWDER document. Processing such a document yields RDF triples describing the resources that are within the scope of the DRs. POWDER documents are written in XML and have relatively loose semantics, however, a GRDDL transform, associated with the root namespace, renders the data in RDF/OWL with more formal semantics. [from homepage]"^^ . "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine."^^ . "^[0-9]+$"^^ . . . "ontology" . . . . "000009"^^ . . "sopropef" . . "SWRL enables Horn-like rules to be combined with an OWL knowledge base."^^ . . . "ProteomeXchange" . "https://europepmc.org/article/AGR/$1"^^ . . . . . . . . . . . . "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD)."^^ . . . . . . . . . "http://purl.org/spar/doco/$1"^^ . . . "ontology" . . "^\\d{7}$"^^ . . "https://lattes.cnpq.br/$1"^^ . "https://www.clinicaltrialsregister.eu/ctr-search/search?query="^^ . . "^\\d{7}$"^^ . . "00100005"^^ . _:Na8ff46ff061a4e4a820f4d98132c5c3a "steve.ray@qudt.org" . "https://www.biozol.de/en/product/"^^ . . . . "The DCAT-AP conversion to a LinkML Schema is the intended point of truth for the DCAT-AP+ schema, but could be used alternatively as a LinkML representation of DCAT-AP for other Projects. It is a port of DCAT-AP to the LinkML world that is as faithful to the original as possible. This Persistent Identifier does not only provide the SHACL Shape, but could also be used as described [here](https://github.com/perma-id/w3id.org/tree/cecbc2e5f40d928f05ed5306d24fc60db0e7bb21/nfdi-de/dcat-ap-plus). DCAT-AP+ is a [LinkML](https://linkml.io/)-based extension of the [DCAT Application Profile 3.0](https://semiceu.github.io/DCAT-AP/releases/3.0.0/) that adds a provenance layer for describing how a dataset was generated and what it is about, using the [Starting Point Terms of PROV-O](https://www.w3.org/TR/prov-o/#description-starting-point-terms), the [QUDT ontology](https://www.qudt.org/), and [Dublin Core Terms](http://purl.org/dc/terms/)."^^ . . . . . "bfo11span" . . "architecture" . . "MEROPS Family" . "false"^^ . . "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$"^^ . "Assembling the Fungal Tree of Life - Taxonomy" . . . "ontology" . . . "robert.thacker@stonybrook.edu" . "sweet.propcou" . . . . "http://www.gramene.org/db/genes/search_gene?acc=$1"^^ . . . . "^\\d+$"^^ . . "^\\w+:[\\w\\d\\.-]*$"^^ . "EARL is a vocabulary, the terms of which are defined across a set of specifications and technical notes, and that is used to describe test results. The primary motivation for developing this vocabulary is to facilitate the exchange of test results between Web accessibility evaluation tools in a vendor-neutral and platform-independent format. It also provides reusable terms for generic quality assurance and validation purposes. [from homepage]"^^ . "Dictyostelium discoideum anatomy" . "http://purl.bioontology.org/ontology/NDDF/"^^ . "Evan Patterson" . "^\\d+$"^^ . . . . . . . "br/0601"^^ . . . . . . "plasmodb" . . . "person" . . . "A collection of ontologies, controlled vocabularies, and schemas relevant for the NFDIxCS Consortium." . "umbbd.pathway" . "This ontology is a part of the the Crop Ontology project, as an essential source of traits and variables to support the standardization of the breeding databases."^^ . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Organic Compound"^^ . "false"^^ . . . . "obo" . . "ohd" . . . "SWEET Ontology State Biological" . . "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . "units" . . . "kegg.drug" . . "gesis" . . "true"^^ . . "1cukA01"^^ . . "http://purl.obolibrary.org/obo/OMIABIS_"^^ . "ThermoFisher is a life sciences supply vendor."^^ . . . "support" . "ontology" . . . . . . "conotoxin" . . . "0376"^^ . . "false"^^ . . . . "chemical formula" . "botany" . "coypu" . "gnpis" . . "uniprot/swiss-prot" . . . . "^[FKPU]\\d{3}$"^^ . . . . . . "http://purl.obolibrary.org/obo/CLAO_$1"^^ . "plant breeding" . . . "A classification system for the subject matter of works of art, originating from work from Henri van de Waal in the 1940."^^ . . "https://w3id.org/kim/hcrt/"^^ . . "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis="^^ . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . "swisslipids" . . . "Ensembl Plants" . "Catalytic Site Atlas" . "0000001"^^ . . "ontology" . "food" . "expression" . . "01013"^^ . "SWEET Ontology Representation Mathematics Graph" . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Rotation"^^ . . . . "life science" . "function" . "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL). The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet. As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use."^^ . "true"^^ . "ontology" . . . "Arc"^^ . . "false"^^ . "ontology" . "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors."^^ . "sorelph" . "media-type"^^ . . "subject agnostic" . "MESHCS" . . "open educational resources" . . "gfbio.biobank" . . . . "http://www.pharmgkb.org/disease/$1"^^ . . . . . . . . "AKR-270"^^ . "Anton I Petrov" . . "false"^^ . . . . . . . "^\\d{3}\\w(\\w|\\d_)\\d{4}X$"^^ . . "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information."^^ . . . . "DataCite Ontology" . "npatlas" . . . . . . . . "frbrer" . . . . "^AA\\d{4}$"^^ . "LINCS Data" . . "The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture."^^ . "ndex" . . . "Fission Yeast Phenotype Ontology" . . . "^\\d+$"^^ . "http://www.weizmann.ac.il/molgen/loqate/gene/view/$1"^^ . . _:N52b7ab780dcd4fa698e7a2cb35b8efd8 "francolamping@gmail.com" . . . "false"^^ . "https://www.ndexbio.org/viewer/networks/"^^ . "false"^^ . "epidemiology" . "http://purl.obolibrary.org/obo/OGMS_"^^ . "omia" . "TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)"^^ . . "chemical" . . . . . . "http://purl.bioontology.org/ontology/HCPCS/$1"^^ . . . . . "protein" . "PubMed" . . . . . "0000639"^^ . "sulo" . . "protein" . . . . . . "dwc.em" . . "^\\d+$"^^ . . . . "GlycoNAVI" . . . . "The NLM Catalog provides access to NLM bibliographic data for journals, books, audiovisuals, computer software, electronic resources and other materials. Links to the library's holdings in LocatorPlus, NLM's online public access catalog, are also provided. [from homepage]"^^ . . "gmd" . . "virology" . . . "191"^^ . "EB0170"^^ . "rbeavis@thegpm.org" . "http://purl.obolibrary.org/obo/MAT_$1"^^ . . . "geosparql.function" . . . . . "Prefixes for ontologies relevant for the NFDI4Energy" . "false"^^ . . . . "Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.\n\n**Deprecation Notice**: While the `/elements/1.1/` namespace will be supported indefinitely, DCMI gently encourages use of the `/terms/` namespace (i.e., `dcterms`) ([source](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#section-3))."^^ . . "ontology" . . "false"^^ . "Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses."^^ . . . "ClassyFire" . . "https://www.genenames.org/data/gene-symbol-report/#!/symbol/"^^ . "machine learning" . . . . . "s4grid" . "The NFDI4Culture portal offers all content as Linked Open Data over this RESTful API. The API implements the Hydra-Specification of the W3C Hydra Community Group. The semantic description of this API can be retrieved by clients via the Hydra documentation file (JSON). Each metadata record offered via this API can also be retrieved in one of following machine-readable LOD serializations. The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage)."^^ . "^\\d{7}$"^^ . "false"^^ . . . "bacterin" . "ontology" . "centrally registered identifier" . . "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id="^^ . "github.pull" . . "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1"^^ . . "http://vivoweb.org/ontology/core#$1"^^ . . . "This ontology extends the SAREF ontology for the Smart City domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Smart City domain."^^ . . "biology" . "infection process" . . . . . . . . "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression."^^ . . . "AN6278-5"^^ . "https://comptox.epa.gov/dashboard/$1"^^ . . . . . "Cu.me.I1"^^ . . . . . "multiple sequence alignment" . "jmcl@ebi.ac.uk" . "^([3-5][A-Z])\\w+[^A-Z][0-9]$"^^ . . . . "The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species."^^ . "cells" . . "agrkb" . "obo" . "false"^^ . . "molecular genetics" . . "true"^^ . . . . "Interconnect Topology Ontology" . . "00000022"^^ . . . . . . . "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . . . "genomics" . . "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation" . "A vocabulary of argumentation predicates for SIOC"^^ . "enzyme" . "food" . "saref.ener" . . "The WikiPatwhays Graphical Pathway Markup Language (GPML) vocabulary."^^ . . . . . . . . . "The CDC's National Center for Immunization and Respiratory Diseases ([NCIRD](https://www.cdc.gov/ncird/)) developed and maintains HL7 Table 0227, Manufacturers of Vaccines (MVX). It includes both active and inactive manufacturers of vaccines in the US. Inactive MVX codes allow transmission of historical immunization records. When [MVX code is paired with a CVX code](https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=tradename) (vaccine administered code), the specific trade named vaccine may be indicated."^^ . . . . "https://github.com/w3c/vsso-core#"^^ . "genetic variation databases" . . . . . . "Biotin_biosynthesis"^^ . . . . . . . . . "EDAM Ontology" . "SAREF4AUTO: an extension of SAREF for the automotive domain" . "BE1"^^ . "ForwardStrandPosition"^^ . "iedb" . . . . . . "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities."^^ . . . . . "http://www.cazy.org/$1.html"^^ . "https://portal.gdc.cancer.gov/cases/$1"^^ . . . . . . "^\\d+$"^^ . . "http://top-thesaurus.org/trait#$1"^^ . . . . . "false"^^ . . . . "AbyssalHill"^^ . "rna" . "jfernand@um.es" . "sequence variant" . . . "Tick Anatomy Ontology" . . . "KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns."^^ . . . "ontology" . . "study design" . "beginning_of_existence"^^ . . "loc" . "Integbio" . . "U001388"^^ . "http://purl.obolibrary.org/obo/SPD_"^^ . "pfbaldi@uci.edu" . . . . "http://purl.obolibrary.org/obo/kestrelo_"^^ . . "ontology" . "civic.gid" . . . . . . . . . "false"^^ . "https://www.w3.org/ns/ui#$1"^^ . . "Christine Orengo" . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1"^^ . "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1"^^ . _:N63c196e1ce454593a397ccef50dd1ee8 . . . "covid-19" . . . "interaction" . . . "ribonucleic acid" . "measurement" . "FactGrid" . "^\\d{7}$"^^ . "false"^^ . . . . "http://sweetontology.net/propChemical/$1"^^ . "^FB\\w{2}\\d{7}$"^^ . . . "The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations."^^ . "nembase" . . . "298593-1"^^ . "abdelmoneim.desouki@tu-darmstadt.de" . . . . "https://vocabs.ilc4clarin.ilc.cnr.it/skosmos/$1"^^ . "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae."^^ . . "false"^^ . "ontology" . "Ontologized MIABIS" . . "structure" . "https://www.kew.org/data/grasses-db/www/$1"^^ . "Identifier for a user in iNaturalist"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Instrument"^^ . . "whole genome sequencing assay" . . "http://purl.obolibrary.org/obo/OMIT_$1"^^ . . . . . "sweet.procp" . . . . . . . . . "Anja Gerber" . "https://w3id.org/kim/hochschulfaechersystematik/$1"^^ . . "anatomy" . . "sequence" . . "guiderdoni@cirad.fr" . "drug metabolism" . "sd" . . . . . . "Atlas"^^ . . . . . "^\\d{3}$"^^ . . . "NIST Chemistry WebBook" . . . . . "kuiper@bio.ntnu.no" . . . . . "http://id.loc.gov/authorities/genreForms/"^^ . . . "IND608186955"^^ . . . . . "false"^^ . . . . "https://www.mavedb.org/#/experiments/urn:mavedb:"^^ . "obo" . . "chembl" . "sorel" . . . "iclc" . . "A vocabulary for annotating vocabulary descriptions" . . . "structural biology" . "fbql" . "Trade Agreement Ontology" . . . . . . "false"^^ . "lipro" . . "dna" . . "http://sweetontology.net/humanEnvirAssessment/"^^ . . . . . "olivier@nlm.nih.gov" . . . . "nfdi4ing" . . . "HUMAN0000174"^^ . . "omics" . . . . . . . . "Ontology for Biobanking" . . . . "https://biopragmatics.github.io/providers/bs/"^^ . "CYDRCOR.HE139104"^^ . "ecogene" . "relations" . . . "material science" . . . "Maggot" . . . . "G77500AY"^^ . . . . . . . . . . "molecular_function" . "Spectral Database for Organic Compounds" . _:N50f3f5c2b990468fb810205f04cb07e8 "fred@fgiasson.com" . . . . "AvailablePotentialEnergy"^^ . . "false"^^ . . "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene="^^ . "nucleic acid" . "^GLDS-\\d+$"^^ . . "http://purl.obolibrary.org/obo/SBO_$1"^^ . . "https://lincs.hms.harvard.edu/db/cells/$1"^^ . "materials" . . "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"^^ . . "Structural Classification of Proteins - Unique Identifier" . "^\\d{7}(_\\d)?$"^^ . . . . "chemistry" . "Creative Biolabs Antigen provides identifiers for antibody-based entities such as recombinant, functional, engineered, and format-specific antibodies as well as antibody processing tools, which are essential for applications in diagnostics, therapeutics, and immunology."^^ . . . . "235" . . "Christian Himpe" . . . . "systems engineering" . "gene" . "http://vbrc.org/gene_detail.asp?gene_id="^^ . _:Nf3a1a56bb8ce45dcbb8d1df049a37d77 . "false"^^ . . "^[a-f0-9]{32}$"^^ . "s4ener" . "saref.lift" . "https://ngdc.cncb.ac.cn/lncbook/gene?geneid="^^ . . "lipidbank" . . . . . . . . . . . "Cassava Ontology" . . "resource metadata" . . . "GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals"^^ . "geography" . "microarray" . "LTS0004651"^^ . . "^\\d{7}$"^^ . "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Aeolian"^^ . "biology" . . . . "sweet.phatmops" . "space" . "https://giardiadb.org/giardiadb/app/record/gene/"^^ . . . "Cultural Objects Names Authority" . . "pheno@jax.org" . "drugbank" . . "DCAT-AP is a DCAT profile for sharing information about Catalogues containing Datasets and Data Services descriptions in Europe, under maintenance by the SEMIC action, Interoperable Europe.\n\nThis Application Profile provides a minimal common basis within Europe to share Datasets and Data Services cross-border and cross-domain. [from homepage]"^^ . "sequence" . . . . . . . "The ISA Programme Location Core Vocabulary provides a minimum set of classes and properties for describing any place in terms of its name, address or geometry. The vocabulary is specifically designed to aid the publication of data that is interoperable with EU INSPIRE Directive."^^ . . . . "https://spdx.org/licenses/"^^ . . . "ofiehn@ucdavis.edu" . "Ontology of standardized units"^^ . . . "21692"^^ . . "doi" . . "datf" . "compulyeast" . . "C. elegans Gross Anatomy Ontology" . . "experimental measurement" . "project management" . . "Japan Chemical Substance Dictionary" . "UMLS CUI" . . . "sweet.phatmofr" . "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" . . "CB82546919"^^ . "assay" . . . "computational biology" . . "false"^^ . . "false"^^ . "false"^^ . . "http://sideeffects.embl.de/se/$1"^^ . . "Hsa-Let-7-P2a3"^^ . . . . . "immunology" . . . . . . . . . . "53504"^^ . "SWEET Ontology Phenomena Atmosphere Pressure" . . . "wave" . . . . . "tto" . . "^\\d+$"^^ . . . "pathbank" . "neurobiology" . "1801.012"^^ . "phenotype" . . "http://purl.obolibrary.org/obo/kestrelo_$1"^^ . . . . "http://purl.obolibrary.org/obo/FYPO_"^^ . "An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF."^^ . . . "ontology" . . . . . . . "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles."^^ . . "co_343" . . "plant cell biology" . "Keywan Hassani-Pak" . . . . "translational initiation" . . "A resource for anatomical and disease terms"^^ . "090924"^^ . . . . . . . "DrugBank" . . "2-s2.0-0030770923"^^ . . . . . . "engineering" . . . "false"^^ . . . . . "https://mgtbind.pkumdl.cn/complex/$1"^^ . . "dna" . "container" . . . . . "plant phenotypes and traits" . . "genetic construct" . . . . . "mechanical engineering, energy technology" . . "http://www.sasbdb.org/data/$1"^^ . . . "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl="^^ . . . "false"^^ . "ontology" . . _:N2d2bdb8f36b846d089477071249aa32c "barbara.magagna@gmail.com" . "Veterinary Substances DataBase" . . . . . . "genetics" . "drug structure" . . . . . . . . "@biopragmatics/curies"^^ . "sequence feature" . "https://bioregistry.io/cncb.gwh:"^^ . "economics" . "Gene Wiki" . . "http://purl.org/ontology/rec/core#$1"^^ . . "The RNA Modification Database" . "sohuecons" . . . . "https://terms.codata.org/rdmt/$1"^^ . "rbca.jackson@gmail.com" . . . . . . . "mesh.vocab" . "WHO Mortality Country Code" . . "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id="^^ . . "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0="^^ . . . . . . . "ComplexPortal" . . "project" . "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO."^^ . . "European Commission Library Thesaurus" . "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"^^ . "false"^^ . . . . . "false"^^ . "biomedical science" . "false"^^ . "condo" . . . . . . . . "http://purl.obolibrary.org/obo/LFID_$1"^^ . . . "http://purl.obolibrary.org/obo/VT_"^^ . . . . . "DOAP is a project to create an XML/RDF vocabulary to describe software projects, and in particular open source projects."^^ . "protein-protein interactions" . . . . . . . "go" . "National Science Foundation Award" . . . . . . "goldbook" . "EasyChair Call for Paper" . . . . . "false"^^ . "78"^^ . . . . . . "false"^^ . "gene" . . . "repository" . . "https://glytoucan.org/Structures/Glycans/$1"^^ . "Human developmental anatomy, abstract" . "genome" . "https://biopragmatics.github.io/providers/goche/$1"^^ . . . _:N0c61f424829b43e7b8486173c667afe0 . . . . "Luana Licata" . . "PSEEN0001"^^ . "sequence annotation" . "Online Mendelian Inheritance in Animals" . "obo" . . . . "https://pathbank.org/view/$1"^^ . "Yossih@tauex.tau.ac.il" . . . . "AC00963334"^^ . "https://gnss-metadata.eu/MOID/"^^ . "boo"^^ . . "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme."^^ . . "https://www.storedb.org/store_v3/download.jsp?fileId=$1"^^ . . "OMIM" . . . "biopax" . . . . . "maglott@ncbi.nlm.nih.gov" . "false"^^ . "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1"^^ . . "http://www.case.edu/EpilepsyOntology.owl#$1"^^ . "uniprot.location" . "pypi" . . . . "ST000900"^^ . . . . "false"^^ . . . "false"^^ . . . "clinical studies" . . . "A vocabulary for embedding provenance metadata into webpages via RDFa"^^ . "true"^^ . . . . . "COEXISTENCE" . . "http://zbw.eu/stw/thsys/"^^ . "https://grants.nih.gov/stem_cells/registry/current.htm?ID="^^ . . . "ontoneo" . . "obo" . "Tim Beck" . "Arc"^^ . . "markus.stocker@tib.eu" . "false"^^ . "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$"^^ . . . "pactr" . . . . "snp" . "false"^^ . "genome/gene" . "ehdaa2" . "disease" . "phenotype" . . "An ontology for mouse anatomy covering embryonic development and postnatal stages."^^ . . "true"^^ . . . "http://sweetontology.net/realmLandVolcanic/$1"^^ . . . "Identifier of an object from the ASTD database."^^ . "ontology" . . "ontology" . . "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships."^^ . . "namerxn" . "obo" . "^\\d{7}$"^^ . "http://www.molmovdb.org/cgi-bin/morph.cgi?ID="^^ . . "bead62a8-c3c2-46d6-9eb1-ffeaba38d5bf"^^ . "NLXBR" . . . . "life science" . "ontology" . . . . "sequence" . . . . . "Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions."^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean"^^ . "^\\d{7}$"^^ . . . "https://www.uniprot.org/diseases/$1"^^ . "kasschau@cgrb.oregonstate.edu" . "Human Reference Atlas Common Coordinate Framework Ontology" . . . "Abdelmoneim Amer Desouki" . "life science" . . . "false"^^ . "biomedical science" . "physical geography" . "https://gateway.eubopen.org/compound/"^^ . . "RCB0002"^^ . "chemistry" . . . "false"^^ . . . "^\\d{7}$"^^ . "dataplant" . . . "The digital content format descriptions accessible here provide specific information about individual formats and their characteristics. Each description provides moderately detailed information and citations. Planned for inclusion are a wide variety of formats: file formats, file-format classes, bitstream structures and encodings, and the mechanisms used to compress files or bitstreams. Inclusion of a description for a format does not imply that the format is preferred or acceptable for Library of Congress collections. [from homepage]"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Chemical"^^ . . "true"^^ . . "fly" . "0000504"^^ . . "ProDom" . "dalia" . . "Stefanie Seltmann" . "eropmoscow" . . . "^\\d+$"^^ . "https://www.w3.org/2000/10/swap/grammar/bnf#"^^ . "SWEET Ontology Realm Climate Zone" . "swo" . "co_365" . . . "https://ximbio.com/reagent/"^^ . . "co_339" . "false"^^ . . . . . "GPS_location"^^ . "energy" . "bs" . "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"^^ . . "chemistry" . . . _:N6d9270660ec941fda4d2c371c151b789 "rafael.goncalves@stanford.edu" . . . . . . . "protein family/group databases" . . "^(?:[a-zA-Z]+\\/)?[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . _:N5a8dc1c53dcc48a295290663ce719b4f "Anita Ghebeles" . "cell line" . . . . . . . "organism" . . . . "^[1-9]\\d*$"^^ . . _:Ncb8c53a519e3409db0fdedbb6e86aa62 "PLOS Taxonomy Team" . . . . . . . . . "fairmat" . "http://sweetontology.net/phenEcology/$1"^^ . "small molecule" . . . "transport" . . . . "false"^^ . "pubmed" . . . . "http://www.signaling-gateway.org/molecule/query?afcsid="^^ . . "biomedicine" . . . . . . "RID1"^^ . "^\\d{7}$"^^ . . . "The samples subsection of HuBMAP provides metadata about individual tissue samples collected from donors, and are the downstream experimental datasets for scRNA sequencing. Each sample has a unique identifier that links it to donor information, anatomical source, and related datasets."^^ . . . "An ontology for User Interface description, Hints and Forms" . . . "Basic Register of Thesauri, Ontologies & Classifications" . . . . . "Ge Gao" . "A structured controlled vocabulary of the anatomy of mosquitoes."^^ . . . . "xenopus" . "cst" . "co_370" . . "polysaccharides" . "SWISS-MODEL Repository" . . "pahg" . . "false"^^ . "organism-specific databases" . "ontology" . . . . . "gitea/gitea"^^ . . . . "https://civicdb.org/links/evidence/$1"^^ . . . . "Forum on Information Standards in Heritage - Event Types Thesaurus" . "unimod" . "fungi" . "intenz" . . "AN0097748"^^ . "agriculture" . "AtmosphericBoundaryLayer"^^ . "false"^^ . "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym="^^ . . . "Cell line collections (Providers)"^^ . "physical properties" . "protein" . "http://wikiba.se/ontology#"^^ . . "AmbientNoise"^^ . "protein" . "http://sweetontology.net/humanKnowledgeDomain/"^^ . "AKR"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time"^^ . "sorea" . . . "http://dramp.cpu-bioinfor.org/browse/All_Information.php?id=$1"^^ . "NCBI_Taxon_ID" . . . . . . . . . "small molecule" . "cohesindb.loops" . "metatlas.metabolite" . "https://cd-code.org/c-mods/$1"^^ . . . . . . "https://rpcec.sld.cu/en/trials/"^^ . . . . "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^ . "Loterre (Linked open terminology resources) is a platform for multidisciplinary terminological scientific resources sharing, complying with the linked open data standards and the FAIR principles."^^ . . . "ratmap" . "01001"^^ . . . "^PA[1-9]\\d*$"^^ . "65"^^ . . "crowdsourcing" . "jakkbl@gmail.com" . . . . . . . . "Brick is an open-source effort to standardize semantic descriptions of the physical, logical and virtual assets in buildings and the relationships between them. Brick consists of an extensible dictionary of terms and concepts in and around buildings, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of Brick with existing tools and databases. Through the use of powerful Semantic Web technology, Brick can describe the broad set of idiosyncratic and custom features, assets and subsystems found across the building stock in a consistent matter. Adopting Brick as the canonical description of a building enables the following: 1) Brick lowers the cost of deploying analytics, energy efficiency measures and intelligent controls across buildings, 2) Brick presents an integrated, cross-vendor representation of the multitude of subsystems in modern buildings: HVAC, lighting, fire, security and so on, 3) Brick simplifies the development of smart analytics and control applications, and 4) Brick reduces the reliance upon the non-standard, unstructured labels endemic to building management systems."^^ . . "xenobiotic metabolic process" . "obo" . "Curated Drug-Drug Interactions Database - Drug" . . . . . . "help@emdatabank.org" . . "medical informatics" . . . . . . . . . "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id="^^ . . . "protein" . . "virgen" . "Adam Godzik" . . "faldo" . . . . . "https://www.atcc.org/products/"^^ . "0000013"^^ . . "protein" . "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations."^^ . . "molecular_function" . . "mirjam.stappel@uni-osnabrueck.de" . . "transcriptomics" . . . . "nfdi-matwerk" . . . "enzyme commission number" . . "sequence" . . "0002-1975-61"^^ . "study design independent variable" . . . . . "ontology" . . . . . . . . . . "sequence" . "ontology" . . . . "genomics" . "datanator.gene" . "computer science" . . "ontology" . . "http://www.weizmann.ac.il/molgen/loqate/gene/view/"^^ . . . "https://bioregistry.io/metaregistry/"^^ . "data analysis" . . . "DOCiD" . "clinical studies" . . . . "http://purl.org/dsw/"^^ . "kelly.hughes@utah.edu" . "prediction and recognition" . "ypo" . "genetic interaction (sensu unexpected)" . . . . "Animal Genome Size Database" . "n.lenovere@gmail.com" . . . . . "difference" . "https://ordb.biotech.ttu.edu/ORDB/Data/$1"^^ . . . "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"^^ . . "^[0-9]+$"^^ . "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."^^ . "false"^^ . . "false"^^ . "PyPI" . . . . "carrine.blank@umontana.edu" . . "A nomenclatural ontology for biological names" . . "false"^^ . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors."^^ . "Matúš Kalaš" . . "http://sweetontology.net/stateRole/"^^ . "bibliography" . "soreaah" . . . . . . . "insertion" . . . "0000001"^^ . . . . "https://elsst.cessda.eu/id/3/$1"^^ . . "false"^^ . . . "false"^^ . . . . . . . . "FID BAUdigital Subject Headings" . . "mathias.uhlen@scilifelab.se" . "229233"^^ . "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information. This entry represents UniProt mnemonics which combine an alphanumeric representation the protein name and a species identification code representing the biological source of the protein."^^ . . . . . "expression" . . . "0000001"^^ . "genetic variation" . . . . . . . "^\\d+$"^^ . "ontology" . . . . . . "The Veterinary Nomenclature (VeNom) is a standard set of clinical veterinary terms for use in referral veterinary hospital electronic patient records and first opinion veterinary practice management systems."^^ . "^\\d{7}$"^^ . . . "F3436"^^ . . . . . . . . "ChemPro Competitor" . "false"^^ . "SNOMEDCTCT_2018_03_01" . . . . "immunology" . "Chinese Clinical Trial Registry" . . . "http://www.genomesize.com/result_species.php?id="^^ . . . "1433C_TOBAC_1_252"^^ . . "Yi Zhao" . "The Building ontology has been developed to perform as the core module of the BIMERR Ontology Network, containing information related to building topology, and components. The model is constructed as an extention of the BOT ontology that provides the vocabulary to describe the topology of a building as well as the relationships between their main components such as zones, spaces, and building elements. The taxonomy of building components is based on the proposed by the IFC 4.1 standard."^^ . "http://www.opengis.net/def/rule/geosparql/"^^ . "false"^^ . . . "morphology" . . . . "psi-mi" . . . "biomedical science" . "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer."^^ . "genome" . . . "Jörg Waitelonis" . . "time" . "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#"^^ . . "phenotype" . "atmosphere wind" . . . "kcris" . . "sorealc" . . . "nfdi4chem" . "^[A-Z0-9]+$"^^ . . "data infrastructure" . . "life science" . "Topology Data Bank of Transmembrane Proteins" . . "http://sweetontology.net/propMass/$1"^^ . . "gianni.cesareni@torvergata.it" . "FBbt" . . . "^CPX-[0-9]+$"^^ . . . "tdwg" . . . "false"^^ . "organ" . "14362"^^ . . "beiresources" . "cannabisdatabase" . . . "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase."^^ . . . . . "data analysis" . . "090801"^^ . . . . . . . "https://data.gesis.org/cvbrowser/$1"^^ . "http://ratmap.org/Showgene.php?gene_stable_id=$1"^^ . "http://ontology.tno.nl/cerise/cim-profile#"^^ . . . "ontology" . "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."^^ . . . "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=$1"^^ . . "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations."^^ . "BD1a05-A-A-IPM1"^^ . . "role" . . "subject agnostic" . "Library of Congress MARC File Type" . . . "Acre"^^ . "hasPrimaryUriPattern"^^ . . . "false"^^ . "AP00378"^^ . . "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible."^^ . "suprabank.additive" . "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms."^^ . "^[A-Za-z0-9]+$"^^ . . . "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match."^^ . . . . "assay" . "organ" . . "http://terminology.hl7.org/CodeSystem/v2-"^^ . "Human developmental anatomy, timed version" . "http://purl.obolibrary.org/obo/NGBO_"^^ . . "gist" . . "National Xenopus Resource" . . . "false"^^ . "tsc" . . "http://purl.obolibrary.org/obo/OGG_"^^ . "^\\d+$"^^ . "ontology/terminology/nomenclature" . "This is the core module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . "sopropdifu" . "proteins" . "false"^^ . . . . "rna" . . "false"^^ . "^[0-9]+$"^^ . "systems biology" . "biopax" . . "Yiming Bao" . "A collection of ontologies, controlled vocabularies, and schemas relevant for the NDFI4Cat Consortium.\n\nThis collection was originally based on the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." . . . "protein" . "Identifiers for microbially derived natural products that contains compound structures, producing organism taxonomy, biosynthetic and chemical properties."^^ . "mutant" . "ontology" . "developmental biology" . . "https://cameochemicals.noaa.gov/chemical/"^^ . "https://fedirect.toolforge.org/?id="^^ . . . . . . "http://www.hprd.org/protein/$1"^^ . . "Information Resource Registry" . . . "Getty Iconography Authority" . "MGYP000261684433"^^ . "https://www.chictr.org.cn/searchproj.html?title=&officialname=&subjectid=®status=®no=$1&secondaryid=&applier=&studyleader=&createyear=&sponsor=&secsponsor=&sourceofspends=&studyailment=&studyailmentcode=&studytype=&studystage=&studydesign=&recruitmentstatus=&gender=&agreetosign=&measure=&country=&province=&city=&institution=&institutionlevel=&intercode=ðicalcommitteesanction=&whetherpublic=&minstudyexecutetime=&maxstudyexecutetime=&btngo=btn"^^ . . "Ontology Concept Identifiers" . . "^\\w{5}\\.\\d{2}\\..*$"^^ . . . . "social sciences" . . . "Chemical Information Ontology" . "5112"^^ . . . "Rat Genome Database qTL" . "small molecule" . . . . "genotype" . "Philippe Le Mercier" . "realm" . . . "ChemicalCompound"^^ . "shuichi@hgc.jp" . . . "EncryptedDocument"^^ . . . . "A dictionary of named properties and classes for Software Package Data Exchange (SPDX) - an open standard for communicating software bill of material information, including components, licenses, copyrights, and security references. SPDX reduces redundant work by providing a common format for companies and communities to share important data, thereby streamlining and improving compliance. [from homepage]"^^ . . . . "xpo" . _:N1e896f270aff4ffd8744e2af89859474 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "https://www.merriam-webster.com/dictionary/$1"^^ . . "Christos (Kitsos) Louis" . "http://uri.neuinfo.org/nif/nifstd/nlx_$1"^^ . "false"^^ . "https://web.expasy.org/cellosaurus/cellopub/$1"^^ . . . "enzymatic reaction" . "VFDB Genus" . . . "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1"^^ . . "developmental biology" . . . "https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL#$1"^^ . "ConfIDent Event" . . . "^[A-Za-z0-9]+$"^^ . "pathway" . "metabolite" . "^[A-Z0-9]{6,7}$"^^ . . "polbase" . . "ess" . . . . . . . . "ontology" . "An ontology about scholarship"^^ . "sweet.stsb" . . . . "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells."^^ . "Destatis subject classification" . . . "Ramona Walls" . "false"^^ . . . "molecule" . . "^DP\\d{5}r\\d{3}$"^^ . "https://pharmacodb.ca/tissues/"^^ . . "https://mgtbind.pkumdl.cn/compound/"^^ . . "epigenetics" . . . "false"^^ . "saref" . "yperez@ebi.ac.uk" . . "false"^^ . . "pride.project" . . . . . "antibody" . . . . "Astrophysics Source Code Library" . "Database of small human noncoding RNAs" . "^\\d{7}$"^^ . . . "NCT00222573"^^ . . . . "false"^^ . . "^\\d+$"^^ . . "gene model annotation" . . "biomedical science" . "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Statistics"^^ . "https://proteininformationresource.org/cgi-bin/show_obci?id=OBCI:"^^ . "fid move" . . . . . . . "https://sparontologies.github.io/fabio/current/fabio.html#$1"^^ . . . "false"^^ . "mgtbind.citation" . . . . . . . "http://www.owl-ontologies.com/BiodiversityOntologyFull.owl#$1"^^ . . "https://www.chemfont.ca/chemicals/"^^ . "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system."^^ . . "https://books.google.com/books?id="^^ . "AntiBodies Chemically Defined database" . . . . "true"^^ . . "A representation of the periodic table of the elements in OWL, with both elements and a hierarchical classification. This is from the DARPA Agent Markup Language (DAML) project, which has been inactive since the mid 2000's."^^ . "raid" . . . . . . "ihw" . "https://www.findacode.com/code.php?set=ICD10PCS&c=$1"^^ . . "building" . "ZINC1084"^^ . . . . . . . . . . . "ruili.huang@nih.gov" . . . . "small molecule" . "false"^^ . . . "biocuration" . . "anatomy" . . "molecular biology" . "sophen" . . "Dialnet book" . "orthology" . . . . . "tbreddy@lbl.gov" . "UMLS Semantic Types Ontology" . . . . . . "12dgr161"^^ . "biomedical science" . . "RBR-6qvdftm"^^ . . . "1200031"^^ . . . . "gene expression" . "European Science Vocabulary Ontology" . "integbio" . "ngl" . "Chris Stoeckert" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Chemical"^^ . . "clinical data" . "crisprdb" . . . . . . "imaging" . . . . . "KEGG COMPOUND" . . "9530"^^ . . "false"^^ . "false"^^ . "^([a-z]{3,5}_)?M\\d{5}$"^^ . "exposedBy"^^ . "prefixcommons" . . "gist" . "SWEET Ontology Realm Land Orographic" . . "strain" . . "obo" . . . "http://sweetontology.net/phenAtmoWindMesoscale/$1"^^ . . "nfdi4chem" . . . "UniProt Isoform" . . . . . "chemical" . . "ontology" . . . . "disease" . . . . "https://www.ncbi.nlm.nih.gov/gtr/tests/"^^ . . "bioimaging" . . "http://www.cathdb.info/cathnode/"^^ . "http://rs.tdwg.org/dwc/terms/$1"^^ . "https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr=$1"^^ . . "http://purl.org/spar/bido/$1"^^ . . . . . . "http://w3id.org/kim/schulfaecher/"^^ . . . . . . . "ontology" . . "mmartone@ucsd.edu" . "repository" . "https://www.pirbright.ac.uk/node/$1"^^ . "https://www.horsetelex.com/horses/pedigree/$1"^^ . _:N96932286d34845f09220d9323a95c38b . . . "1178"^^ . "AffyProbeset" . "br/1"^^ . . "trust framework" . . . . "has reviewer" . . . "http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"^^ . . "AccretionaryPrism"^^ . . . "wot.tm" . "http://purl.obolibrary.org/obo/IDO_"^^ . . . . . "Thin-film Solar Cells Ontology" . . "pazar" . . "chemical structure image" . "26753"^^ . "animal organ development" . "isochronic tones" . "life science" . "nlx.br" . "false"^^ . "Leszek Vincent" . . . . . "eagle-i resource ontology" . "An experimental run, served thrugh the ENA"^^ . . . "ddi" . "false"^^ . "false"^^ . . "Ontology of the historical German-language nomenclature for offices and professions" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time"^^ . . . "ontology" . "37271072100"^^ . . "life sciences, biology" . _:N599724583ff9427d839af759d7d92293 . "^\\d+$"^^ . "pathway" . . . . . . "http://sweetontology.net/phenAtmoTransport/$1"^^ . "TubercuList" . . . "0001263"^^ . "Predicates in the Encyclopedia of Life data schema for describing animals, plants, and other organisms"^^ . . "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_"^^ . . "0000001"^^ . "610"^^ . "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement."^^ . "protein family/group databases" . "ontology" . "ProjectOrStudyDesign"^^ . . "^\\d{7}$"^^ . . "genetics" . . "compound" . "enzymatic reaction" . "hao.ref" . . . . "ccrid" . "http://bioinformatics.hsanmartino.it/hypercldb/$1.html"^^ . . . . . "Suggested Ontology for Pharmacogenomics" . . . . "environmental conservation" . "MGgn0008978"^^ . "pgx" . "protein" . "ontology" . . "434"^^ . . . "AlgebraicSolution"^^ . "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID="^^ . . "global health" . . . "cell" . "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"^^ . . . . "bernd.mueller@zbmed.de" . . . . "ontology" . "Photon and Neutron Experimental Techniques Ontology" . . "Open Biological and Biomedical Ontologies" . . "ontology" . . . . . . "sweet.huea" . . . . . . "Branch"^^ . . . "cc.legacy" . "http://purl.obolibrary.org/obo/CL_$1"^^ . "transcription factor" . "sorelm" . "UTRdb" . . . . "General Formal Ontology" . . . . "0000004"^^ . . . . . . "Canadian Drug Product Database" . . "PerkinElmer" . "Type of Instrument" . . . . "^[A-Z]+$"^^ . "life sciences, biology" . . . . . "regulatory region" . "protein" . "confident.series" . . . . "https://www.surechembl.org/chemical/$1"^^ . . . . "FB00000917"^^ . "s4mari" . "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins."^^ . . "false"^^ . . "general & upper" . "ontology" . . . . . . "^\\d+$"^^ . "mgnify.samp" . . . "PharmGKB Drug" . "classification" . . . . . . "http://terminology.lido-schema.org/eventType/"^^ . . . "bandrow@gmail.com" . "ncim" . . . "https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code=$1"^^ . "Protein Information Resource" . "protein" . . . "neurophysiology" . . . . . . . "false"^^ . . "Terminology of Anatomy of Human Embryology" . "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1"^^ . . . . "fishbase.species" . "phenotyping" . . "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id="^^ . "ontology" . "udsaes.sms" . . "genome" . . . "DG00301"^^ . . . . . . "https://www.ncbi.nlm.nih.gov/genome/"^^ . . . . . "false"^^ . "odor" . "NMRShiftDB structure" . . . . . "glycobiology" . "https://www.kegg.jp/brite/"^^ . "Stephan Sinn" . . . . "genomics" . . . . "bioinformatics" . "expression" . . . . "colao" . "sheepqtldb" . "SAGE Social Science Thesaurus" . "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . "joerg.overmann@dsmz.de" . . "EDDA Study Designs Taxonomy" . . . . . "SFLDS00019"^^ . . "taxonomy" . "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world."^^ . . . "Database of Interacting Proteins" . "^DP\\d{5}$"^^ . . "dna" . . . "whole genome sequencing assay" . . "Phenol-Explorer" . "ontology" . "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information."^^ . "sprint" . . "ontology" . . . . "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)."^^ . . "DBrodbelt@rvc.ac.uk" . . . . . . . . . . "TIB Terminology Collection" . . "Integrative and Conjugative Element Ontology" . "^SIGNOR\\-[A-Z]+\\d+$"^^ . . "^CDBP00\\d{6}$"^^ . . "educational science" . . "http://purl.obolibrary.org/obo/UO_"^^ . . . . . . . "9789211613865"^^ . "false"^^ . . "^\\d+$"^^ . . . . . . . "vaccine" . "life science" . . . . "http://rdfs.org/sioc/ns#$1"^^ . "false"^^ . "Damage Topology Ontology" . "ontology" . . "geologic tectonic" . "false"^^ . "This ontology is a part of the the Crop Ontology project , as an essential source of traits and variables to support the standardization of the breeding databases."^^ . "false"^^ . . . "551115"^^ . . . "Horizon Discovery cell line collection" . . . "false"^^ . . . . "false"^^ . "literature curation" . . . "false"^^ . . . "genetic disorder" . "chemistry" . . "^[A-Z0-9]+$"^^ . . "http://purl.obolibrary.org/obo/PD_ST_$1"^^ . . "embryonic stem cell line" . . . "Nematode Expression Pattern Database" . "Nathan Edwards" . . . . . "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity."^^ . "unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)"^^ . . "SNOMEDCT_US_2016_03_01" . "false"^^ . "ontology" . . . . "MGP005034"^^ . "feature"^^ . "^\\d{4,}((_[asx])?_at)?$"^^ . . "CIViC Molecular Profile" . . . . . "false"^^ . . "Bill Hogan" . . "reecehart@gmail.com" . . . . . . "false"^^ . . . "KEGG pathway" . . . "http://bigg.ucsd.edu/models/universal/reactions/$1"^^ . "Sanger Cell Model Passports" . . . . . . . "genome/gene" . . . "gene" . . "false"^^ . "false"^^ . "The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms."^^ . . . "http://www.w3.org/ns/activitystreams#$1"^^ . . "A database of GlycoMaps containing 2585 conformational maps."^^ . "Access"^^ . "154022"^^ . . "UP" . . . . . "coastalland" . . "^\\d+$"^^ . . "family and domain databases" . . . . . "commerce" . . . . "tib.bo" . . "jiezheng@pennmedicine.upenn.edu" . "dna" . . . . . . . "QualityAnnotation"^^ . "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web"^^ . . "EMLSAT00000003403"^^ . . "Actor"^^ . . . "a.39.1.1"^^ . . . . . . "Stemcell Knowledge and Information Portal" . "life sciences, biology" . "si" . "https://www.uniprot.org/locations/$1"^^ . . . . "health science" . "The Simplified Upper Level Ontology (SULO) is ontology with a minimal set of classes and relations to guide the development of a personal health knowledge graph. [from homepage]"^^ . "SWEET Ontology Phenomena Ocean Dynamics" . "nuts" . . . . . . "^[a-z0-9_]+/[A-Za-z0-9._-]+$"^^ . . "https://www.ndexbio.org/viewer/networks/$1"^^ . "SIDER Side Effect" . . . . . . . . "^\\w+_?\\d+(.\\d+)?$"^^ . . "false"^^ . . . "https://doulix.com/biomodules/$1"^^ . . . . "gene" . . . . "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . . . "sweet.sttg" . . . . "Represent chemical entities having particular CHEBI roles"^^ . . . . . . . "qtldb" . "gbif" . "0001157"^^ . . . . "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID="^^ . "sequence" . "CCSO is an educational ontology acting as a data model for concepts and entities within an academic setting, enabling also the annotation of potentially available resources. The ontology aims to conceptualize educational entities within Curriculum and Syllabus with appropriate coverage and quality, in order to support rich services on top for improving curriculum management and automatically enabling syllabus semantic processes. (from homepage)"^^ . "International repository of Adverse Outcome Pathways."^^ . "LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR)."^^ . . . "^[A-Za-z0-9]+$"^^ . . "sequence alignment" . "46"^^ . . "E5.11.2.0.0.0.4"^^ . "Flora Phenotype Ontology" . . . . . "created"^^ . . . "Minimum Information about a Tailoring Enzyme data repository" . "false"^^ . . "computer science" . "iedb.assay" . "false"^^ . "false"^^ . . . "flicek@ebi.ac.uk" . . "Imanis Life Sciences cell line products" . "SNOMEDCT_2020_03_01" . . . . . "gesis.variables-relations" . "http://purl.obolibrary.org/obo/ZP_"^^ . "243002_at"^^ . "genome/gene" . "receptor" . . . . . . "https://w3id.org/ontouml#"^^ . "ro" . "enzyme" . . "chemistry" . . . . . . "ArrayGroup"^^ . . . . "pubchem.substance" . "false"^^ . . "model organisms" . . . . "http://id.nlm.nih.gov/mesh/vocab#$1"^^ . . "ontology" . . . . . "Telethon Network of Genetic Biobanks" . "http://sweetontology.net/reprSciFunction/"^^ . "false"^^ . . . . . "http://sweetontology.net/propSpaceMultidimensional/"^^ . "ICD9" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Knowledge Domain"^^ . "Fab.Schreiber@gmail.com" . "CDBP00415501"^^ . . "cosmic.gene" . "^\\w+$"^^ . "^MMP\\d+.\\d+$"^^ . . . "^NCT\\d{8}$"^^ . "organism" . "BioLink Model" . "false"^^ . . . . . . "ddi.responseunit" . "mirex" . . . "130502"^^ . . . "^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$"^^ . . . "omics" . . . . "https://purl.brain-bican.org/ontology/hbao/HBA_$1"^^ . . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . "sjbrown@ksu.edu" . "PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains."^^ . "http://data.food.gov.uk/codes/foodtype/id/"^^ . "learning resource" . . . "health science" . "ontology" . . . "https://w3id.org/semapv/vocab/"^^ . . "ontology" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Physical"^^ . "agriculture" . "20.500.14351/5a7cdd09d9b65bc39697"^^ . "phenomena" . "biomarker" . . . "dbvar.variants" . . . "oae" . . . . . "false"^^ . . . . . . "hpm.peptide" . . "Zebrafish Experimental Conditions Ontology" . . "biology" . "bioresource" . "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1"^^ . "false"^^ . . "Sabine.Oesterle@sib.swiss" . "equipment" . "chemical structure" . "The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas."^^ . . "life science" . . "http://purl.obolibrary.org/obo/SOPHARM_"^^ . "biozil" . . . "https://mgtbind.pkumdl.cn/citation/"^^ . . "humap" . "todd.detwiler@uky.edu" . . . "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1"^^ . . . "false"^^ . "Vocabulary of a Friend" . "atc code" . . . "protein" . "ontology" . "603903"^^ . "http://w3id.org/openeduhub/vocabs/educationalLevel/$1"^^ . "space weather" . . . "Animal Health Ontology for Livestock" . "genotype" . "rna splicing" . . "obo" . "false"^^ . . "^[0-9a-f\\-]+$"^^ . "Web Annotation Ontology" . . "protein" . "http://bigg.ucsd.edu/compartments/$1"^^ . "sosa" . . "psychophysics" . . "^\\d{7}$"^^ . . . "omics" . . _:N42042392c3844fc98656954f8fcd79cf . . . . "false"^^ . "false"^^ . "protein" . . . "http://icd9cm.chrisendres.com/index.php?action=search&srchtext="^^ . . . "method" . "target" . "This ontology contains terms for defining a context-free grammar. The basic property is mustBeOneSequence which is equivalent to the expression of a production in the original simple BNF. Rules can be used to convert into and out of shorthand forms such as optional, repeating and token-separated list forms. Terminals are described either as a string, which is represented by itself, or are defined by a regular expression using cfg:matches."^^ . . . "EP0311"^^ . "phenotype" . . "marie-paule.lefranc@umontpellier.fr" . . "^\\d+$"^^ . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Potato Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . . "ontology" . "pierre.grenon@ifomis.uni-saarland.de" . . . . . . "iot" . . . . . . . "activityBoundOf"^^ . . . . . "0440"^^ . . . . "nfdi4ing" . "^\\d+$"^^ . . . . . . . "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins."^^ . "moonprot" . . "RXCUI" . "ERP004492"^^ . . "Finto" . "http://sweetontology.net/reprSpaceGeometry/"^^ . "Andrew C. McShan" . . "Digital Construction Occupancy ontology represents those aspects of construction and renovation projects that concern the comfort, safety and health of occupants, including visual and thermal comfort, indoor air quality and building acoustics, as well as related sensor observations."^^ . "biology" . . . . "false"^^ . . "runbiosimulations" . "^[A-Za-z0-9_-]*$"^^ . "ontology" . . "false"^^ . . _:N45da04ff54d749b7883f84ebf7481c0a "jamsden@us.ibm.com" . "structure" . . . _:N599724583ff9427d839af759d7d92293 "Gary O'Neall" . . . . . . "tfclass" . "https://bioregistry.io/resolve/github/pull/"^^ . "A public place to process, interpret and share GC/MS metabolomics datasets."^^ . . "tm.shah@cgiar.org" . . . . . . . . "http://www.coloncanceratlas.org/search_cell_line?cell_line="^^ . . "David Clunie" . _:Ncf368068c78b4d8cbea1d176ecac8547 . . . . "Standard-Thesaurus Wirtschaft" . . . . . . . . "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present."^^ . . "ISCW007415"^^ . "AT1G01030.1"^^ . . "http://www.loc.gov/premis/rdf/v3/$1"^^ . . "http://purl.obolibrary.org/obo/DOID_$1"^^ . . "ontology" . . "false"^^ . "evidence tiers" . . . . "pieter.mestdagh@ugent.be" . . . "myco" . . . "0000010"^^ . . . "public finance" . "^\\d+$"^^ . . . . . . "01.01.005"^^ . "proteomics" . "UniPathway Reaction" . . . "sddo" . "egon.willighagen@gmail.com" . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Biological"^^ . . . "https://pubmed.ncbi.nlm.nih.gov/$1/"^^ . "ActuatorLevel"^^ . "LDM24s001"^^ . . . "transcription factor (tf) enrichment" . "dna" . . "The Prescription of Drugs Ontology" . . . "InterLex" . . . . . "http://sweetontology.net/matr/$1"^^ . "A project in the ChemBioSys data platform"^^ . . . . "Tobias Hamann" . . "cultural studies" . . . . . "https://suprabank.org/buffers/"^^ . . . . . "http://id.loc.gov/vocabulary/mfiletype/$1"^^ . "primary health care" . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Science Provenance"^^ . . . . "false"^^ . . . "chemical structure" . . . . "http://sweetontology.net/stateSpace/$1"^^ . "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$"^^ . . . . . . "anatomy" . . . . . "MMsINC" . "A study in the ChemBioSys data platform"^^ . "^\\d+$"^^ . . . . "classification" . . . . . "785"^^ . . "pao" . . "Lonza" . . . . . "stw"^^ . "GCF_000001405"^^ . . "^(\\w){3}$"^^ . "brainwave entrainment" . "life science" . "sweet.phcy" . . . . . "units" . . "protein-protein interaction databases" . "false"^^ . . . . "gold.meta" . "false"^^ . . . "http://sweetontology.net/phenGeolGeomorphology/$1"^^ . "daae3565-dc29-4de6-af13-f7db239f95b7"^^ . "Nalika Palayoor" . "materials" . "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms."^^ . . . . "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources."^^ . . . . . . . . . . "false"^^ . . "AestheticFunction"^^ . . . "repository" . "The TIB Terminology Service is an instance of the EBI OLS." . . "bibliometrics" . . . "http://vocab.getty.edu/page/ia/"^^ . "Ontology Management Environment Project" . . . . . "Bgee organ" . . . . "NRFC051"^^ . . . . . . "expression" . . . . . . "Interactions are SupraBank's way to collect information about experiments that describe the binding interaction between molecules. The form for creating an interaction enables you to list all experimental conditions. An interaction is similar to an entry in a table in your scientific publication, but providing machine readable comprehensive information. (from homepage)"^^ . . . . "Gregory Landrum" . "wave" . "Wikidata Property" . . . . . "tdwg.format" . . "protein" . . . "pubchem_id" . "LOC_Os01g49190"^^ . . "zhaoxuetong@big.ac.cn" . . "icpd.study" . . . . . . . . "dna" . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1"^^ . "protein" . "sweet.man" . "false"^^ . "genome" . "ecotoxicity" . "ontology" . "protein" . "false"^^ . "protclustdb" . . "Repository of packages for the R programming language"^^ . "^\\d+$"^^ . . . . . . . . "pharmacy" . "ontology/terminology/nomenclature" . "http://purl.obolibrary.org/obo/"^^ . "veNOG12876"^^ . "http://www.kegg.jp/entry/"^^ . "sweet.manr" . . . "https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1"^^ . . . . . . "reagent" . "engineering" . . _:N73616f5897fa42ef883d55a961d5a352 "cameron@rockefeller.edu" . "vaccine" . "obo" . "0000255"^^ . . "false"^^ . "ddi" . . "ontology" . "iceberg.cime" . . "^\\d{7}$"^^ . "troy_pells@yahoo.ca" . "PseudoGene" . "The general type of a resource, a related resource or a related item."^^ . . "lobid vocab" . . . "^\\d{7}$"^^ . . "obo" . . . . "^N[0-9]{10}$"^^ . . "open science" . . "true"^^ . "mass spectrometry assay" . "906801"^^ . "karyotype" . . . "false"^^ . "false"^^ . . . . . "http://www.receptors.org/nucleardb/proteins/$1"^^ . . . . "http://sweetontology.net/stateRoleBiological/"^^ . . "realm" . . "false"^^ . . . . . . . . "Platform Material Digital Core Ontology" . "bmrb.restraint" . . . "entrez gene/locuslink" . "PubChem Cell Line" . "genecards" . . . "animal model" . . . . . . . . . "Yuki Yamagata" . "binding site" . _:Nff11fb709ac041ac83dabf28d3cb0e9e . "https://www.ncbi.nlm.nih.gov/genome/$1"^^ . "0000019"^^ . . . . . . . "nucleotide" . . . "genetic variation" . . "realm" . . "regulation of gene expression" . . "property" . "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs)."^^ . . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes."^^ . "false"^^ . . "mcourtot@gmail.com" . . . . "http://purl.obolibrary.org/obo/ADO_$1"^^ . "chemical entity" . . "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName="^^ . "ontology" . . "PharmacoDB Tissues" . . "https://biodolphin.chemistry.gatech.edu/detail/"^^ . . . . . "false"^^ . . "genome/gene" . . . "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$"^^ . . . . "Ontology used in the Historic Geo Information System"^^ . . . "https://zenodo.org/record/"^^ . . "^\\d{7}$"^^ . . . "10015919"^^ . . "medicine" . "sfEquals"^^ . "^XF[A-Z0-9]{8}$"^^ . . . "genome" . . . "https://odc-tbi.org/data/$1"^^ . . "differential gene expression profiling" . . "rebec" . . . . "^\\d+$"^^ . . "Hazardous Substances Data Bank" . . "chembiosys.project" . . "false"^^ . . . "ribonucleic acid" . . "cerise.cim" . . . . . . "polypeptide region" . . "aging" . . . "vibrotactile stimulation" . . "Yongqun Oliver He" . . . "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan="^^ . . . . . . "plant phenotypes and traits" . . "false"^^ . . . "https://rarediseases.org/?p="^^ . "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1"^^ . . . . "false"^^ . . "geography" . "A metadata stadnard to model data science training materials. Later, was replaced by Bioschemas' [training materials specification](http://bioschemas.org/specifications/TrainingMaterial/specification/)."^^ . . . . . "ess" . "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law."^^ . . "true"^^ . . . . . . . "https://unicarb-db.expasy.org/msData/$1"^^ . . . . . "sweet.relh" . "sweet.phhy" . . . "The main objective of RefMet is to provide a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. [from homepage]"^^ . . . "Karen R. Christie" . . . . . "^CE\\d{5}$"^^ . "This CV, developed within the framework of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the dimensions of discrimination and racialised characteristics relevant to the research area. The compilation is based on a systematic evaluation of the relevant national and international empirical research literature. These include self-attributed characteristics as well as anticipated attributions by others. The characteristics do not necessarily correspond to the studied units in the data set, but can also be the subject of studied concepts or theories in the surveys, such as on specific prejudices and attitudes."^^ . . "Experimental Factor Ontology" . . "https://nfdi.fiz-karlsruhe.de/ontology/NFDI_$1"^^ . "Nucleotide Sequence Database" . "^\\d{7}$"^^ . . "F45.21"^^ . . "^[A-Z]C\\d{1,3}$"^^ . . . . . "life science" . . . . "http://www.case.edu/EpilepsyOntology.owl#"^^ . "gmd.gcms" . . . "drug" . . . . "http://purl.obolibrary.org/obo/AGRO_$1"^^ . "computer science" . "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites."^^ . . . "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=$1"^^ . . "Osamu Ohara" . "educational resources" . . "NIF Standard Ontology: Subcellular Entities" . "journal" . . . . "10153"^^ . . "Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions"^^ . "This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from )" . "molecular weight" . . "proteins" . "BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format."^^ . . . "00001"^^ . . . "Ambrose Carr" . "^GenProp\\d+$"^^ . "sorepmso" . "life sciences, biology" . "obo" . "Raras Class" . . "gemet.relation" . . . "dermo" . "stem cell" . . . . "http://unite.ut.ee/bl_forw.php?nimi="^^ . . "Sol Genomics Network" . . . "phenotype" . . "https://www.inaturalist.org/observations/$1"^^ . . . "smid" . . . "http://sweetontology.net/reprDataServiceReduction/"^^ . "http://world-2dpage.expasy.org/repository/database=$1"^^ . . . "An alternative or synonymous prefix" . . "sequence" . . "biological regulation" . . . . "false"^^ . . . "post-translational protein modification" . "^PA\\d+$"^^ . "Value Sets" . . . "chromatography" . "An ontology for modeling international trade flows."^^ . . "nfdi4cat" . . "Names of organisations providing metadata for CESSDA Data Catalogue."^^ . . . . . . "ArrayExpress" . . "Salmon Ontology" . "false"^^ . "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities."^^ . . "https://cropontology.org/rdf/CO_334:"^^ . "multisensory integration" . . "macie" . "false"^^ . . . "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance."^^ . "cst.ab" . . "jaxMiceUID" . . . "CompoundEquivalence"^^ . . "Ontology of Zebrafish Experimental Conditions"^^ . . "^\\d+-\\d+(-[A-Z])?$"^^ . . "JGI Phytozome" . . . "genotype" . "dwc.pw" . . "mosquito" . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts."^^ . "UDB000691"^^ . . "peptideatlas" . . "https://biocomputeobject.org/BCO_"^^ . "kim.amb" . "Biocuration Conference 2025 Collection" . . . . . . . "has alternative prefix" . . "hasAverageAnnualPrecipitation"^^ . . "http://ktmfk.de/ontology/tribAIn/$1"^^ . . "organism" . "Absorption"^^ . . "This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain"^^ . "GCST000035"^^ . "https://repeatsdb.org/protein/"^^ . . . . . . "biology" . . "molecular entity" . . . . . "AcknowledgementCondition"^^ . "mutation" . . . "Gene Ontology Annotation Database" . . "image/movie" . . . . . . . . . . . . . . _:Nd44a53f9f6b54147bdd0003033f18b06 "Adriano Souza" . "^\\d+$"^^ . "ontology" . "computational biology" . "cdna/est" . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013."^^ . "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession="^^ . "https://resolver.api.identifiers.org/resolveMirId/"^^ . . "Provenance, Authoring, and Versioning Vocabulary" . "https://swbiodiversity.org/seinet/taxa/index.php?taxon="^^ . . "promoter" . . "life sciences, biology" . "AdministrativeUnit"^^ . "false"^^ . "health/disease" . . . "http://sweetontology.net/realmHydro/"^^ . . "transposable element" . . . "cteno" . . . . "Area"^^ . . . . "http://rs.tdwg.org/dwcpw/"^^ . . "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1"^^ . "https://vac.niaid.nih.gov/view?id=$1"^^ . "rnamods" . "agriculture" . . . . "false"^^ . "true"^^ . "genome/gene" . "^E\\d+$"^^ . "Gleaning Resource Descriptions from Dialects of Languages" . "http://world-2dpage.expasy.org/repository/database="^^ . "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments."^^ . "anatomy" . "analytical chemistry" . "protein interactions" . . . "http://cdb.iso.org/lg/"^^ . "protein domain" . . "environmental standards" . . . "false"^^ . . . "An anatomical and developmental ontology for ctenophores (Comb Jellies)"^^ . "omics" . "http://uri.gbv.de/terminology/datacite-relationtype/"^^ . "tib.io" . . . . . . . "Terry.Hayamizu@jax.org" . . . "false"^^ . "somatic" . . . . . "^\\d{7}$"^^ . "uniprot.keyword" . . . "ontology" . . . . "human" . . . . . . . . . "^(ENSFM|ENSGTV:)\\d+$"^^ . "structure" . . . "GA4GH Data Repository Service for data objects managed by the HeartData data commons."^^ . . "stereotype"^^ . . "WikiGenes" . "false"^^ . "civil engineering" . "https://git.onem2m.org/MAS/BaseOntology/raw/master/base_ontology.owl#"^^ . . "false"^^ . "obo" . . . . "expression data" . . "enzyme" . . "https://www.kegg.jp/brite/$1"^^ . "https://lov.linkeddata.es" . "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1"^^ . "Dutch Research Council file numbers are used for approved grants."^^ . "BioCarta Pathway" . . . . "false"^^ . . "https://www.gtexportal.org/home/gene/$1"^^ . . . . . . . "genome" . "allele" . . . . . "Mouse Tumor Biology Database" . . . . "cog" . . "The localization and quantitation atlas of the yeast proteome" . . "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders."^^ . "plant phenotypes and traits" . "health/disease" . "PANTHER Node" . "terms4FAIRskills" . "P12345"^^ . . . "gramene.ref" . "embryo" . "false"^^ . . "sequence" . . . . "Functional Mock-up Interface Ontology" . . "pso" . "digital planning and construction" . . . "BioModels Database" . "false"^^ . . . . "treebase" . "Biomarker Knowledgebase - Biomarker" . . "sweet.reac" . . . "ddi.analysisunit" . "http://purl.obolibrary.org/obo/HAO_"^^ . . "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . . "natural science" . . . . . "60316"^^ . . "Daniel Sonenshine" . . "group_27"^^ . "trans spliced" . . . . "aao" . . . . "Pointer Methods in RDF" . . . . . . "false"^^ . . . "relationships" . . "apd" . . "classification" . . . . . "This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]"^^ . . . . "violinnet" . "methods" . "^\\d{7}$"^^ . . "http://lincsportal.ccs.miami.edu/cells/#/view/$1"^^ . "http://sweetontology.net/statePhysical/"^^ . "false"^^ . . . . . "loc.vocabulary" . _:N9cd2dbccea9144e8bc22aee917ecf49e "Bgee team" . . . "obo" . "Pubchem" . . . "false"^^ . "https://biopragmatics.github.io/providers/peff/"^^ . . "langual" . "microbial" . . "^\\d{7}$"^^ . "http://sweetontology.net/realmGeolOrogen/"^^ . . . . . . "apto" . "life science" . . "sshopencloud" . . "MAM01234c"^^ . "31623"^^ . . . . "^CHEMBL\\d+$"^^ . . "AntiFam" . "^MIMAT\\d{7}$"^^ . . . "file format" . . "dna sequence" . . "nfdi4ing" . . "false"^^ . . "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products."^^ . "gavin.thomas@york.ac.uk" . . "SWEET Ontology Property Temperature Gradient" . . . . . . . . "http://www.w3.org/ns/prov#$1"^^ . "https://civicdb.org/links/drugs/$1"^^ . . "oclc" . "gudmap" . . . "Identifiers correspond to curated multigene families in the human genome from the Phylogenomic Analysis of Human Genome (PAHG) database, focusing on evolutionary relationships and gene duplication events across vertebrates."^^ . "An open, community-driven registry of conference and event venues.\n\nEVR assigns persistent identifiers (PIDs) to make referencing venues FAIR. This is similar to how ORCID assigns PIDs to researchers and ROR assigns PIDs to research organizations.\n\nThis benefits researchers assembling information about in-person conferences and events by enabling them to refer in an unambiguous way to the venue where it takes place.\n\nThis repository follows the [Open Data, Open Code, Open Infrastructure (O3) principles](https://www.nature.com/articles/s41597-024-03406-w), meaning that the data and code are all in one repository that anyone can contribute to."^^ . . . . . . "Zhiliang Hu" . "false"^^ . "immunology" . . "cdna/est" . "life sciences, biology" . . "Tree of Life Web Project" . "MinorGroup"^^ . "^\\d{7}$"^^ . . . . . . . . . . . . . "false"^^ . "false"^^ . "Josh Moore" . "NITE Biological Research Center Catalogue" . . . . "bibliography/documents" . . . . "Agricultural Online Access" . . "MOSAiC Ontology" . "disease" . "false"^^ . "biodiversity" . . . . "phosphopoint.protein" . . . . . . "molecular genetics" . "Banco de Celulas do Rio de Janeiro" . "sequence" . . . . "ontology" . . "ato" . "false"^^ . . . "https://nmrxiv.org/spectra?compound=$1"^^ . . "NFDI MatWerk Ontology" . . . . "dna" . "audio-visual entrainment" . . . . "^CNP\\d{7}(\\.\\d+)?$"^^ . . "ontology" . "^\\d+$"^^ . "compound" . "agriculture" . . . . . . . . . . . "https://sciflection.com/$1"^^ . . "http://purl.obolibrary.org/obo/FBSP_"^^ . "sael" . . "ontology" . "enzyme" . . . . . "1h68"^^ . "capacity" . . . "PolBase" . . . _:N1428f9180d1f471ab135b8894dae7164 . "moid" . "Yaron Guan Golan" . "http://purl.org/goodrelations/v1#$1"^^ . . . . . "power engineering" . . "genome/gene" . "ontology" . . "nfdi4culture.cto" . . "X58356"^^ . "infectious disease medicine" . _:N29321bc93ed44da79ffd26a6549637f2 "ncithesaurus@mail.nih.gov" . "chemistry" . "bioproject" . . "RiceNetDB Reaction" . "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1"^^ . "https://purls.helmholtz-metadaten.de/prima/dataset#$1"^^ . . . . "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view."^^ . . . "http://sweetontology.net/phenCryo/$1"^^ . _:Nf488503062b74d018d8fc3d077b2a8cc "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "http://lincsportal.ccs.miami.edu/cells/#/view/"^^ . . "^\\d+$"^^ . _:N8a5ab4b7ee874feb9f6c4c7af488934e "rpalma@man.poznan.pl" . "^[1-9]\\d*$"^^ . "structural biology" . . . "Horsetelex" . . . . . . "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA."^^ . . . "clinicaltrials" . "structure" . "Dating from 1978 when catalogues of the Central Library of the Commission of the European Communities (now the European Union) were computerised, ECLAS is a thesaurus created by the Central Library of the Commission of the European Communities for indexing the publications and documents acquired by the Central Library of the Commission. ECLAS was based on the Macrothesaurus of OECD and complemented by the ILO thesaurus. After creation of EUROVOC in 1984, convergence started in order to bring ECLAS in line with EUROVOC, but it was never complete. ECLAS contains nineteen areas of interest in a hierarchical tree structure consisting of four levels. ECLAS is fully available in English and in French. The OP COMM ECLAS is maintained by the Publications Office of the European Union on the EU Vocabularies website."^^ . . . "T06648"^^ . "rutgeraldo@gmail.com" . . "^t\\d+$"^^ . "ontology" . "https://beilstein-strenda-db.org/strenda/public/doiQuery.xhtml?doi=10.22011/strenda_db."^^ . . . "applied microbiology" . . . . . . . "https://meshb.nlm.nih.gov/record/ui?ui=$1"^^ . . "culture" . . "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term="^^ . "false"^^ . "http://sweetontology.net/repr/$1"^^ . . "PLOS Thesaurus" . . . "ontology" . "systems biology" . . . . "omics" . "publishing" . "ontology" . . "genome" . "NM_006262"^^ . "proteomicsdb.peptide" . "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1"^^ . "co_331" . "genome alignment" . "assays" . . "12"^^ . . . . . . "Glenn King" . . . . "IPR" . . . "physh" . "Integrated Chemical Environment - Chemical data" . . "Andrew I Su" . . "protein modification process" . . . "aging" . . "^(STUDY|FILE|DATASET)\\d+$"^^ . "sweet.repsl" . . "digital health" . "sweet.relsc" . "0000071"^^ . . . "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation."^^ . "https://www.nfdi.de/wp-content/uploads/2025/12/logo25_plus-text-hori_light_transparent.png"^^ . . . . . "http://gemma.msl.ubc.ca/ont/TGEMO_"^^ . "Daniel Kahn" . . "https://cordis.europa.eu/project/id/$1"^^ . "genetic engineering" . . "ddi" . . . . . . . "The main contact person for a registry" . . . . . . _:N458910af68ba4b41bd44acf5bb3ee72b . . . . . . . "Library of Congress Relator" . . . "Lipid"^^ . "dna" . . "https://ibdc.dbtindia.gov.in/icpd/study-view-home/$1"^^ . . "compound" . . . . "dayOfYear"^^ . . "SWEET Ontology Property Temperature" . "^[1-9][0-9]*$"^^ . . . "https://bioregistry.io/pubmed:"^^ . . "ehda" . . . . . "Mark Jensen" . "Air"^^ . . "experimental measurement" . . "Lucas Leclere" . . "false"^^ . . "biomaterial" . . "single balancer" . . "gene" . . . . "BSU29180"^^ . . "go.gpi" . "Robin.Buell@uga.edu" . . "target" . . "dct" . . . . "DP00086r013"^^ . . "uberon"^^ . . . "protein" . . . "ssrn.article" . "Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science."^^ . . "265"^^ . "interaction/pathway" . . "^D\\d{4}$"^^ . . . . . . . . . "https://www.kegg.jp/entry/"^^ . . . "http://vocabularies.unesco.org/thesaurus/concept$1"^^ . "MolBiC Cell Line" . . . . . "Life cycle stages for Mus Musculus"^^ . . "^[0-9]{6}$"^^ . . . . "ontology" . . "materials" . . . . "health science" . . "http://purls.helmholtz-metadaten.de/mwo/mwo_"^^ . . . . . "^[a-zA-Z0-9\\-:#\\.]+$"^^ . "biodiversity" . "jones@nceas.ucsb.edu" . . . "biomedical science" . "17165"^^ . . "false"^^ . . "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23$1"^^ . "https://www.nfdi.de/wp-content/uploads/2022/03/Logo_NFDI-MatWerk-1000px.png"^^ . "Addiction Ontology" . "AffyProbeset"^^ . . . "chemical" . . "Add"^^ . . . "ess" . "true"^^ . . . "Sensory Stimulation Ontology" . "soreala" . "A database-specific registry supporting curation in the Gene Ontology"^^ . "NameRXN" . "repository" . . . . . . . . . . . . "rgd" . . . . . "Ontology for Biomedical Investigations" . "Bacterial Tyrosine Kinase Database" . "genome annotation" . . . . "https://sed-ml.org/urns.html#format:"^^ . . . . "false"^^ . . . . . . "geography" . . "0000000"^^ . . "gene" . "Carlo Torniai" . "semion" . . . "Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars."^^ . "BacMap Biography" . . . "Toxin and Toxin Target Database" . "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1"^^ . "https://web.archive.org/web/1/https://www.semion.io/Author/$1"^^ . . . "http://vocabularies.wikipathways.org/wpTypes#"^^ . . "structure" . . "agriculture" . "ontology" . . "0000072"^^ . . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Temperature Gradient"^^ . . "fetus" . "TBK Reddy" . . . . . "false"^^ . "health/disease" . "ECCODE" . "academy" . "atmosphere pressure" . . . . . "SWEET Ontology Material Animal" . "https://civicdb.org/links/sources/$1"^^ . . . "false"^^ . . . "nfdi4ing" . "^\\d+$"^^ . . . "false"^^ . . "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_$1"^^ . . . "proteomics" . . "https://www.ribocentre.org/docs/$1"^^ . . "http://www.ontobee.org/" . . . "Emotion Response Ontology" . . . . "000000159"^^ . "iso.3166" . . . "life science" . "A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . . "http://sweetontology.net/relaChemical/"^^ . . . "^MCDS_S_[a-zA-Z0-9]{1,10}$"^^ . "obo" . "IPR016380"^^ . . . "SPAR Ontologies" . "00000001"^^ . "false"^^ . . . . . "dockerhub.repo" . . "https://www.chemicalbook.com/ChemicalProductProperty_IN_$1.htm"^^ . . . . "classification" . "http://dictybase.org/gene/$1"^^ . . "Jeet Kiran Vora" . "ontology" . . . "An identifier for an organization"^^ . . "http://sweetontology.net/stateOrdinal/"^^ . . . . "https://crates.io/crates/$1"^^ . "Library of Congress Carriers" . . "HD+118-001"^^ . "^LGCEDe-S-\\d{9}$"^^ . . . . . . "Type of Concept Group" . . . "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant."^^ . . . . "queerNewspapers"^^ . . . "Human Disease Ontology" . "https://neurovault.org/collections/$1"^^ . . "bactibase" . . "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid="^^ . "oridb.sacch" . . "^\\d+$"^^ . "linguistics" . . . . . . "drugs" . . . "http://www.wikipathways.org/instance/"^^ . . . . "https://www.pombase.org/gene/$1"^^ . "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#"^^ . . . . . . "gene expression" . "https://www.cienciavitae.pt/$1"^^ . . "http://emmo.info/emmo/cif-core#$1"^^ . . "false"^^ . "https://ec.europa.eu/esco/lod/static/model.html#"^^ . "false"^^ . . "disease" . . . "https://www.holofooddata.org/sample/"^^ . . . . "A sub-registry of the Library of Congress Linked Data Service"^^ . . "forest management" . . "dna" . . . "ontology" . "Gemma L. Holliday" . . "glycoprotein" . "false"^^ . . . "https://e-cyanobacterium.org/models/model/$1"^^ . "false"^^ . . . "tmjlowe@ucsc.edu" . . . "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1"^^ . . . . "DescriptionLevel"^^ . . . "classification" . . . . "SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies."^^ . "clinical decision support systems" . "virology" . "false"^^ . "cell line" . . _:Nddb7ddea3fa0460daa0f80e1b3fe5dda "Stephan Schurer" . . "ontology" . . "hc.din" . . . . "1374"^^ . "interaction/pathway" . "http://purl.obolibrary.org/obo/ATO_$1"^^ . . . . . . . . . . . . "sweet.huc" . "Anette Ganske" . "protein" . . "Matthias Löbe" . . "psdo" . . "ccso" . . . . "iedb.mhc" . "nfdi4chem" . . . "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop="^^ . . "protein" . . "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_$1"^^ . "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks."^^ . "ontology" . . "https://w3id.org/tso#"^^ . "false"^^ . "^\\d+$"^^ . . . . . . . "lgic" . "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)"^^ . "SWEET Ontology Realm Atmospheric Boundary Layer" . "COSMIC Gene" . . . . . "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data."^^ . . "rdfa" . . "Corpus Vitrearum" . "biology" . "http://purl.obolibrary.org/obo/OARCS_$1"^^ . "TVAG_386080"^^ . "fda.application" . "MAM01234c"^^ . "false"^^ . . "unit" . . "false"^^ . . . "image/movie" . . . . "sweet.rea" . . . . "protein" . . "carbohydrate" . "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Region"^^ . "^NX_\\w+$"^^ . . "https://mirgenedb.org/browse?qtype=mgid&org=ALL&query="^^ . "https://aopwiki.org/events/$1"^^ . "https://doulix.com/constructs/"^^ . "http://purl.obolibrary.org/obo/SIBO_$1"^^ . . "protein" . "sweet.mab" . . "chembiosys.tag" . . "false"^^ . "FEMA provides identifiers for flavor ingredients deemed safe for food use. These entities include chemical compounds and natural substances used as flavoring agents, each reviewed by the FEMA Expert Panel for GRAS (Generally Recognized As Safe) status. The identifiers link to safety data and regulatory assessments, including evaluations by the U.S. FDA and, where applicable, the Joint FAO/WHO Expert Committee on Food Additives (JECFA)."^^ . "Plant Transcription Factor Database" . . . "bioschemas" . "brain" . . "ontology" . . "sequence" . . . . . . . . "^\\d+$"^^ . "https://vocabularies.cessda.eu/vocabulary/TypeOfInstrument?lang=en#code_$1"^^ . . "The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/)."^^ . . . "http://purl.obolibrary.org/obo/WBPhenotype_$1"^^ . . . . . "genome" . . "domainIncludes"^^ . . "NIH RePORTER" . . "L000001"^^ . "https://humap3.proteincomplexes.org/displayComplexes?complex_key="^^ . "binding site" . . "obo" . . . "snp" . . "sequence" . "reactome.pathway" . . "bibliography/documents" . "BioDolphin" . _:Ncf368068c78b4d8cbea1d176ecac8547 "Eric Duchêne" . . . "genomics" . . "https://bioregistry.io/eu.rcn:"^^ . "http://purl.obolibrary.org/obo/EHDA_$1"^^ . "e.arnaud@cgiar.org" . . . . "https://creativecommons.org/ns#$1"^^ . "^\\d+$"^^ . . . "http://purl.obolibrary.org/obo/PLO_"^^ . "obo" . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Network" . "Plant Stress Ontology" . . "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer."^^ . . . "ERR436051"^^ . . "human" . . . "SWEET Ontology State Solid" . "https://bioregistry.io/flybrain.ndb:"^^ . "ontology" . "glycosylated residue" . "http://purl.obolibrary.org/obo/HANCESTRO_$1"^^ . . "nfdi4ing" . . "gaog@mail.cbi.pku.edu.cn" . "http://www.crop2ml.org/cropmdb/$1"^^ . . . . . . . "https://amphibiaweb.org/species/"^^ . "rx00408"^^ . "snomedct" . . "mcc" . "ontology" . . . . . . . . "Identifiers correspond to curated multi-omics datasets documenting post-transcriptional regulatory changes from RNA-binding protein perturbations in the KnockRBP database."^^ . . "pre mirna" . . "OpenTrials" . "w3c rec" . "^\\d{7}$"^^ . "sohu" . . . "protein" . . . . . "Bgee gene" . "6978836"^^ . . . "RM0108606"^^ . . . "ontology" . . . . . "^\\d+$"^^ . _:N3281637cb7e74a7f83cfe058b551151f "tim.vandermeersch@gmail.com" . . . "National Cancer Institute Thesaurus" . . "hpa" . "dataplant" . "loc.menclvl" . "soreaas" . . "eukaryotic" . "gene feature" . "0045310"^^ . . . . "clinical LABoratory Ontology" . . "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1"^^ . . . . . . . "Web of Things Thing Model" . . "Anne Morgat" . . "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research."^^ . . "false"^^ . . "^\\d{7}$"^^ . . . "001"^^ . . "ontology" . . "ZOBODAT person" . "http://purl.obolibrary.org/obo/BTO_"^^ . . "^\\d{8}$"^^ . . "Genomic Metadata for Infections Agents - anatomy" . "medical informatics" . . . . . "Temporal Gemma Ontology" . "doqcs" . "false"^^ . "taxonomy" . . . "livestock" . . "gene name" . . . . . . "rdf" . "https://nrid.nii.ac.jp/ja/nrid/10000"^^ . . . . "services" . . "biopragmatics/bioregistry"^^ . . "2gc4E"^^ . "family and domain databases" . "^\\d{7}$"^^ . "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID="^^ . "mutation" . . . . "http://www.pantherdb.org/panther/family.do?clsAccession=$1"^^ . . . . "PS00001"^^ . . . "expression data" . . . . "0000546"^^ . . "ogata@kuicr.kyoto-u.ac.jp" . . . . . "false"^^ . "false"^^ . "drugs" . "^C\\d+$"^^ . . . "disease phenotype" . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the DAPHNE4NFDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying DAPHNE4NFDI Consortium members appropriate for maintaining this collection." . . . _:Nd87dceae200847d3b09cf8cc4216d22f "d.fichtmueller@bgbm.org" . "false"^^ . "dcat ap" . . "dbpedia" . "false"^^ . . "strain" . "Activity"^^ . "http://www.tcdb.org/search/result.php?tc=$1"^^ . . . . . . "Vilma Hualla Mamani" . . "classification" . . . "biocuration" . "biology" . . . . . . . . "annotation" . . "saref.system" . . "Indian Crop Phenome Database Study" . "http://sweetontology.net/realmSoil/"^^ . "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view."^^ . . . . . . "false"^^ . "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis."^^ . "https://search.dalia.education/communities/$1"^^ . . . . . . . . . . "enzymology" . . "CrowDsourcing COndensate Database and Encyclopedia" . "humanities" . . "Joel Richardson" . . . . . "Drivers of human diseases including environmental, maternal and social exposures."^^ . . "genome/gene" . "phenotype" . . . "^[A-Za-z0-9_]+$"^^ . "health/disease" . . "subject agnostic" . "http://purl.bioontology.org/ontology/npo#NPO_$1"^^ . . "http://purl.obolibrary.org/obo/HSO_"^^ . "^(MNXR\\d+|EMPTY)$"^^ . . "http://exac.broadinstitute.org/transcript/"^^ . . "http://sweetontology.net/phenSolid/$1"^^ . . . . . "molecular microbiology" . . "iNaturalist User" . . "^\\d{7}$"^^ . . . "go-term enrichment data" . . . "nztcs" . "nfdi-matwerk" . "https://biopragmatics.github.io/providers/cemo/$1"^^ . _:N9b54355fa5004e609aac4bfef9d37770 "kdurante@stanford.edu" . "https://omim.org/MIM:PS"^^ . "false"^^ . . . . . . "Dendritic cell" . . "false"^^ . "enzyme" . . . "genomics" . . "^\\d+$"^^ . "https://immport.org/shared/study/"^^ . . . "true"^^ . "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world."^^ . . . . . "false"^^ . "https://vocabularies.cessda.eu/vocabulary/TypeOfTelephone?lang=en#code_"^^ . . "rbo" . . "protein" . . "nfdi4ing" . "ontology" . . . . . "^ANF\\d{5}$"^^ . . . . . "ontology" . . "enzyme" . . . "biomedical science" . . "false"^^ . . . "protein" . . . "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources."^^ . "Castor Bean Ontology" . . "mhucka@caltech.edu" . "dsm-v" . . "protein" . "SWEET Ontology Property Chemical" . "^\\d{8}$"^^ . . "dataplant" . "http://purl.obolibrary.org/obo/EUPATH_$1"^^ . . . . . "KIM Education Level" . "so" . "The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects."^^ . "http://modelseed.org/biochem/reactions/"^^ . "TreeFam" . . "https://www.leadscope.com/structure_search_results.php?ss_string=$1"^^ . "life science" . "ProGlycProt" . . . . "prediction and recognition" . "microbial" . "sorealp" . . . "co_321" . "AAC"^^ . "https://www.ebi.ac.uk/ena/data/view/$1"^^ . . . . . "ordo" . . . "false"^^ . . . . "^[A-Z_0-9]+$"^^ . "1kfv"^^ . . . "si" . "Crop-specific trait ontologies enhance the interoperability and effectiveness of data exchange between the data sources which adopt it, by providing standard concepts that are use to describe phenotypes stored in those sources. As one of them, the Cassava Ontology is actively used and shared in different databases such as the BMS (Breeding Management system) of the IBP or the CassavaBase. Cassava, a major staple crop, is the main source of calories for 500 million people across the globe. A perennial woody shrub native to Latin America, cassava is primarily grown as an annual crop in the humid tropics. A cash crop as well as a subsistence crop, cassava's large edible starchy roots are a source of low-cost carbohydrates for millions. Cassava end products range from fresh roots cooked, boiled, baked or fried at the household level, to highly processed starch as a food additive."^^ . . "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id="^^ . "obo" . . . "tgn" . . "w3c rec" . "http://rdf-vocabulary.ddialliance.org/xkos#$1"^^ . . _:Nb637cfc764f3489199080f6fc6727d03 "report@mail.nih.gov" . "sophatmoc" . . "^MDB\\d{8}$"^^ . . "false"^^ . "lars.eisen@colostate.edu" . . "SWEET Ontology Material Energy" . . . . . . . "anatomy" . . . . . "Loop" . . "DBLP Schema" . . . . . . "https://www.clinicaltrials.gov/study/"^^ . . . "^[a-z_A-Z0-9]+$"^^ . "cora" . . . "Plant Trait Ontology" . . "^\\d{7,8}$"^^ . . "http://ddinter.scbdd.com/ddinter/interact/$1"^^ . . . "0000005"^^ . . . . "Discourse Elements Ontology" . "0000001"^^ . . . "TTD Target" . . "SWEET Ontology State Physical" . . . . "anatomy" . "gene name" . . . "ontology" . . "Semantically-Interlinked Online Communities Services Ontology - SWAN Mapping" . . "An organization in the CORDIS database"^^ . "Synthetic Binding Proteins Binding Target" . "QS210728"^^ . . "false"^^ . "literature curation" . "vac" . "sweet.maae" . . . "nfdi4cat" . _:Na46d6eb74a5f4c06910d7b8c410841db . . . . . . . "ICD11" . . "learning resource" . "^\\d{7}$"^^ . "neuronames" . . . . "protein structure" . . . . . . "wellness" . . . "astrophysics" . . . "genetic disorder" . . . "people" . . . "0110974"^^ . "traits" . "false"^^ . . . . . "Ensembl Fungi" . . "http://purl.obolibrary.org/obo/RS_$1"^^ . . . . . . "genomics" . . . . . . "^\\d+$"^^ . . . . . . "http://sweetontology.net/realm/$1"^^ . . . "attachedTo"^^ . "environment" . "agronomy" . . "a formalization of concepts and relations relevant to evolutionary comparative analysis"^^ . . . . . . "https://si-digital-framework.org/SI/units/"^^ . "genedb" . "life science" . "protein-protein interaction databases" . "life science" . "^DBCOND\\d+$"^^ . "po" . "https://bioregistry.io/cabri:"^^ . "Sharkipedia Trend" . . "The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology."^^ . . . . . "http://purl.org/dc/dcam/"^^ . . "disease model" . . . "https://mathscinet.ams.org/mathscinet/msc/msc2020.html?t=$1"^^ . "traffic engineering" . . "traumatic brain injury" . "00001234"^^ . "semantic web" . . . . . "education science" . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information."^^ . . "0000001"^^ . "https://fairsharing.org/$1" . "r376"^^ . "metacyc.pathway" . . . "wikibase" . "proteomics" . "preclinical studies" . "life cycle" . "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."^^ . . . . "ontology" . . . "immunogenetics" . "rfam" . . "Probability Distribution Ontology" . . . . "http://protege.stanford.edu/plugins/owl/protege#"^^ . "somaen" . . . "life science" . . . . . . . . . "small molecule" . . . . . . "00000001"^^ . . "https://omabrowser.org/oma/vps/$1"^^ . . . . . "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid="^^ . "subject agnostic" . . . . . . "regulation" . . "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$"^^ . "Inverse of provides for" . . . "^PIRSF\\d{6}$"^^ . "Gene"^^ . "true"^^ . . . "Pierre-Alain Binz" . . . . . . "expression" . "swrlx" . "false"^^ . . . . . . . . . "disease" . . "false"^^ . . "Alpha Tom Kodamullil" . . . . . . . "Allyson Lister" . "Descriptive Ontology for Linguistic and Cognitive Engineering" . "2"^^ . . "https://www.inaturalist.org/observations/"^^ . "frederique.lisacek@isb-sib.ch" . "apdavis3@ncsu.edu" . "00007294"^^ . . "false"^^ . . . . "civic.gene" . . . . . . . "^[A-Za-z0-9\\-\\/]+$"^^ . "https://datacommons.org/browser/"^^ . . . "325.4"^^ . . . . "44259"^^ . . . . "The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccines and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clinical vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities."^^ . . "classification" . . "false"^^ . "http://purl.uniprot.org/core/$1"^^ . . . . "false"^^ . "video resource" . . . . "A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc."^^ . . . . "A mid-level ontology for representing metadata related to NFDI resources, including individuals, organizations, projects, data portals, and more"^^ . . . "https://explorer.opentrials.net/trials/$1"^^ . "Quinoa Ontology database of the Crop Ontology (CO_367) of the Generation Challenge Program (GCP) describe traits variables of Quinoa Germinate Database http://germinate.quinoadb.org. Quinoa Phenotyping Consortium Creation Date 23.05.2021"^^ . . "bt0001"^^ . "Miguel A. Fortuna" . . . "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice="^^ . . . . "matthias.loebe@imise.uni-leipzig.de" . . . "morpheus" . "ontology" . "https://bioregistry.io/collection/"^^ . . . . . . . "false"^^ . "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia.variant' prefix is used for genetic variants associated with phenes listed in OMIA"^^ . . . "neurology" . "CORDIS topic" . . "protein interactions" . . . . "James C. Hu" . "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1"^^ . . . . "developmental biology" . . "food" . . "materials informatics" . . . . "image/movie" . "ExAC Transcript" . "HOSAPI0399"^^ . "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"^^ . . "molecular_function" . "^A(N|O)\\d+-\\d+$"^^ . . "http://sweetontology.net/phenAtmoLightning/$1"^^ . "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies."^^ . . "ontology" . . "false"^^ . . . "life science" . "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump"^^ . . . "Homeodomain Research" . . . "^\\d+$"^^ . "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Temperature"^^ . . . . . . "engineering" . . . "proteomic databases" . "structure" . . . "Plant Anatomy Ontology" . "true"^^ . . . "João Paulo A. Almeida" . . . . . . . . "gene" . "Joachim Kopka" . . . "https://saref.etsi.org/saref4grid/$1"^^ . . "gsherloc@stanford.edu" . . . . . . "^spike\\d{5}$"^^ . "https://www.nfdi.de/wp-content/uploads/2022/05/DAPHNE4NFDI_logo.png"^^ . "Common Core Ontologies" . "false"^^ . "https://cropontology.org/rdf/CO_360:"^^ . . "metabolite" . "^\\d+$"^^ . "Allotrope equipment" . . "ontology" . . "https://packagist.org/packages/$1"^^ . "International System of Units - Quantities" . . "biochemistry" . . . "ncbiprotein" . . . . . "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0"^^ . "sioc.types" . "civil engineering" . . "00018c2f-25bf-439b-a58f-8c098118300d"^^ . "ctd.chemical" . "Germplasm Resources Information Network" . "http://purl.obolibrary.org/obo/OPMI_"^^ . "^[A-Z]+[0-9]+$"^^ . "Identifiers for epitopes, which are the specific parts of antigens recognized by the immune system."^^ . "^\\d+$"^^ . "ALA"^^ . . "genetic code" . . "electron microscopy" . . "ontology" . . "http://ctdbase.org/detail.go?type=gene&acc="^^ . "Robert J. West" . . . "GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections."^^ . "earth science" . "gene" . . "rna" . "Date Type" . . . . . . "Interlab Cell Line Collection" . . "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$"^^ . . . "Mirjam Stappel" . . . "http://www.wikidata.org/entity/$1" . "post-translational modification site prediction" . . "https://www.plantplus.cn/treehub/tree/"^^ . "rolf.krahl@helmholtz-berlin.de" . . "KEGG Drug" . . "umbbd.enzyme" . "https://scholar.google.com/citations?user=$1"^^ . . . . "An ontology of minimum information regarding potential drug-drug interaction information."^^ . . . . "Dylan McGagh" . . . . . . "ontology" . "sequence" . "obo" . . . "chemical biology" . . "tol.webproj" . . "educational resources" . . "false"^^ . "Petra Fey" . . . "ontology/terminology/nomenclature" . . . "https://swissmodel.expasy.org/repository/uniprot/"^^ . . . "preclinical studies" . . . . . . "obo" . . "http://purl.org/pan-science/PaNET/PaNET$1"^^ . . . . "https://schema.org/"^^ . "0002005"^^ . . . . . "gene-disease association" . . "sequencing assay" . "digital humanities" . . "https://biokb.lcsb.uni.lu/fact/$1"^^ . "protein expression profiling assay" . . . "drugbank" . . . . "functional genomics" . "http://id.loc.gov/vocabulary/genreFormSchemes/"^^ . "false"^^ . "0000001"^^ . . . "mint" . . . . . . "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets."^^ . "http://uri.neuinfo.org/nif/nifstd/birnlex_$1"^^ . "hpscreg" . "https://openalex.org/"^^ . "genome/gene" . "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments."^^ . "false"^^ . . . . . . "true"^^ . . . _:Ne2ec985d7e9d497a85f1cd18be07c9fa "Kim Durante" . "false"^^ . . "genetics" . . "somaio" . "http://dbpedia.org/property/$1"^^ . . . . "mmp.fun" . "Adrien Coulet" . . "merops" . "The process component of the Allotrope ontology suite"^^ . "medical microbiology" . . "false"^^ . . . . "life cycle stage" . "SWEET Ontology State Visibility" . . "false"^^ . . . "ontology" . . _:Na10ef4aa83064c51a38ef91db21c80c1 "info@wikidata.org" . . "genomics" . . . . "neuroscience" . "Specifies the type of numeric data."^^ . "ontology" . . . "software engineering" . "disease phenotype" . . . . . . . . . "https://dini-ag-kim.github.io/amb/20231019/#$1"^^ . "alternative_term"^^ . "https://deims.org/networks/"^^ . . . . "sioc" . . "qualityOfObservation"^^ . "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"^^ . . . "^P\\d+$"^^ . . . "http://purl.obolibrary.org/obo/OMRSE_"^^ . . . . . . . "http://astrothesaurus.org/uat/$1"^^ . . "6017782"^^ . "http://www.ebi.ac.uk/efo/EFO_$1"^^ . "modeldb" . . "This ontology is a formal representation that captures the fundamental concepts and their relationships to one another in the field of curriculum design and implementation of the German school system."^^ . . . "sweet.phm" . . . . . "geochemistry" . "Conference Ontology" . . "ontology" . . . . "Gene Ontology Reference" . "media type" . "https://bioregistry.io/chemsynthesis:"^^ . "http://addgene.org/"^^ . . . . . . . "protein domain" . . . . . "lectins/172"^^ . . "life science" . "drugbank" . "repository" . "isced-2011" . . . "false"^^ . "taxonomy" . "RXN-14904"^^ . . . . . . . . . "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable."^^ . . "https://www.ebi.ac.uk/arrayexpress/arrays/"^^ . . . "https://www.ebi.ac.uk/ena/browser/view/"^^ . . . "https://bioportal.bioontology.org/ontologies/$1" . . . . . . . . . "ontology" . "SNOMEDCT_US_2019_03_01" . . . "false"^^ . . "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"^^ . . "http://geneontology.org/docs/gene-product-information-gpi-format/#$1"^^ . . "disease" . . "engineering" . . . . . . "https://civicdb.org/links/variant_group/"^^ . . "^\\d{7}$"^^ . . . . "ribonucleic acid" . . "false"^^ . . "^LTS\\d{7}$"^^ . . "isbn" . "http://qudt.org/schema/qudt#"^^ . "ddi.typeoffrequency" . "euroscivoc" . . "bgee.stage" . . . . "https://meshb.nlm.nih.gov/record/ui?ui="^^ . "life science" . "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id="^^ . "cordis.article" . . "nlm.publisher" . . "dailymed" . . "21877"^^ . "false"^^ . . "project" . "Global Biodiversity Information Facility" . . . . . . "SWEET Ontology Material Aerosol" . . . . "SWEET Ontology Material Microbiota" . "loc" . "MIRT000002"^^ . "AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages."^^ . . "https://ec.europa.eu/esco/lod/static/model.html#$1"^^ . "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . "Accession"^^ . . . "catalogs" . "dbpedia" . "https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_$1"^^ . "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/detailed_view/$1"^^ . . . . . "gemina" . . "https://scicrunch.org/resolver/RRID:IMSR_TAC_"^^ . . "false"^^ . "Pennsieve" . . "protein" . . "format controlled vocabulary" . . "09200010"^^ . "AutDB" . . . . "chemical entity" . . "health_care_quality_assessment"^^ . "http://reg.clinicalgenome.org/allele?hgvs="^^ . . . . "dataplant" . . . "nmrXiv compound" . "gene expression" . . . . "sweet.relch" . . . . . "Hepatitis C Virus Database Project" . "http://sweetontology.net/matrParticle/$1"^^ . . . . "6000122"^^ . . . . . . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Geographic"^^ . "Regulation of Gene Expression"^^ . "functional domain" . "organism supplier" . . . . "BioDeep Database" . "ontology" . . . . . _:N151a3034be62402982dfd75f3a6ad46d . "Studies in dbVar."^^ . . . . . . "genetic variation" . . . "https://biomodels.net/vocab/idot.rdf#$1"^^ . . "sorepmg" . "Cancer Data Standards Registry and Repository" . . . "The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)."^^ . "Lists the types of persistent identifiers that CESSDA accepts as study level PIDs in its data catalogue."^^ . . . "http://purl.obolibrary.org/obo/XCO_"^^ . "metagenomics" . "glycomics" . . "https://www.loc.gov/preservation/digital/formats/fdd/$1"^^ . "cellular component" . . "frbr" . . . "d1id" . . "alpha.tom.kodamullil@scai.fraunhofer.de" . . "Transport Systems Tracker" . . . . . . . . . "https://hub.docker.com/u/$1"^^ . . "^\\d{7}$"^^ . "http://www.w3.org/ns/solid/oidc#$1"^^ . . . "aop.relationships" . "http://rds.posccaesar.org/ontology/lis14/rdl/$1"^^ . "http://sweetontology.net/reprSciComponent/$1"^^ . "gomf" . "false"^^ . "Nisha Sharma" . "false"^^ . . "^[0-9]+$"^^ . . "01a"^^ . . "A subspace of Metabolic Atlas for compartment-specific records for metabolites."^^ . . "ontology" . . . "00000011-a"^^ . . "AseismicRidge"^^ . . . "biology" . . . . . "^UMIN\\d+$|^C\\d+$"^^ . "P06"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Constituent"^^ . . "cessda" . "The data cube vocabulary" . "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease."^^ . . _:Nfaab21a690d344e19bfbe35f73c7b87e . . . "genome" . . . "^\\d{7}$"^^ . "sweet.hu" . "cgsc" . . . "genome/gene" . "https://data.chembiosys.de/data_files/$1"^^ . "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object="^^ . "sequence" . "1354581"^^ . . . "serhii.nazarovets@gmail.com" . . . "http://purl.obolibrary.org/obo/IDOMAL_"^^ . . . "gene functional annotation" . . "foundational ontologies" . . "sweet.hur" . "http://data.europa.eu/8mn/euroscivoc/$1"^^ . "SWEET Ontology Property Quantity" . . . . "materials" . "study design" . . . "behavior" . . "Collection"^^ . "Alice Allen" . . "rna" . "annotation" . . "false"^^ . . "MetaCyc Compound" . "false"^^ . . "https://dbpedia.org/ontology/"^^ . . "condition" . "lbd domain binding" . . "^[A-Za-z0-9]+$"^^ . "mfmo" . . "http://terminology.lido-schema.org/termMaterialsTech_type/$1"^^ . . . . . "http://sweetontology.net/humanCommerce/"^^ . . . . . . . "241"^^ . . . "^OSC\\d{4}$"^^ . "natural science" . . "cessda" . "^TA\\d+$"^^ . "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1"^^ . . "File inside StoreDB at University of Cambridge"^^ . "false"^^ . "genetic material" . "lncrna" . . . "ekaterina.chuprikova@eurac.edu" . . . . "VFG2154"^^ . . . _:N50f3f5c2b990468fb810205f04cb07e8 "Frédérick Giasson" . . "http://sweetontology.net/propCount/$1"^^ . . . "true"^^ . . . "http://sweetontology.net/phenElecMag/"^^ . . "SWEET Ontology Human Environmental Control" . "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas."^^ . . . "false"^^ . . . . . "ontology" . . "resource metadata" . . . "small molecule" . . "carbohydrate" . . . . "neuroscience" . . . "biopax" . "an ontology for links and forms, the main hypermedia controls in use on the Web. This ontology offers, among others, a means to reify RDF statements interpreted as links between Web resources. It also provides a versatile exchange format for links and forms in RESTful Web applications. [from homepage]"^^ . . "creativebiolabs.protein" . "binding site prediction" . "DigitRubber Ontology" . . "https://w3id.org/seo#$1"^^ . . "https://envipath.org/package/$1"^^ . . "tkg" . . . . "ontology" . "A registry of life science prefxes"^^ . . "3"^^ . "http://ascl.net/$1"^^ . "ontology" . "vbrc" . . . "The Groundnut Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . . "https://www.bv-brc.org/view/Genome/$1"^^ . . . "http://www.w3.org/1999/xhtml/vocab#"^^ . "0000001"^^ . . "http://purl.obolibrary.org/obo/ONE_"^^ . "Sebastian Lobentanzer" . . . "J0705A10"^^ . "0019171"^^ . . . . . . "spradling@ciwemb.edu" . . "SWEET Ontology Relationships Provenance" . "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits."^^ . "orthology assignment" . "DrugBank Drug Category" . . "Hui Wu" . . "ontology" . . . "disease" . . . . . . "grin" . . . . . . . . "scop.sid" . . . . . . "verbal autopsy" . "graingenes.symbol" . . . "MGnify Project" . "Basic Classification" . "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=$1"^^ . "Philipp Bucher" . "idr" . "microbiology" . . . . "false"^^ . . "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc="^^ . "https://cropontology.org/rdf/CO_370:"^^ . "biomedical science" . . . "chemistry" . . "ontology" . "obv" . . "environmental science" . . . . . . "^(ATBRA\\.\\d{6}\\-[01]{3}|BEKBOBCE\\.[01]\\d{3}\\.\\d{3}\\.\\d{3}|BGCOMREG\\.\\d{9}|CYDRCOR\\.(AE|HE)\\d{1,10}|CZVROR\\.\\d{8}|DE[A-Z][1-9]\\d{3}[RV]?(_[A-Z][1-9]\\d{3}[RV]?)?\\.(G[ns]R|HR[AB]|[PV]R)\\d+[A-Z]*|DKCVR\\.\\d{8}|EEARIREG\\.\\d{8}|ELGEMI\\.\\d{12}|ES[0-5]\\d{4}\\.\\d{9}|FIFPRO\\.\\d{7}\\-\\d|FR\\d{4}\\.\\d{9}|HRSR\\.\\d{9}|HUOCCSZ\\.\\d{2}\\-\\d{2}\\-\\d{6}|IECRO\\.\\d{6,7}|ISREI\\.[4-7]\\d[01]\\d{3}\\-\\d{3}[09]|ITRI\\.\\d{11}|LIFL\\.FL\\-\\d{4}\\.\\d{3}\\.\\d{3}-\\d|LTJAR\\.\\d{9}|LURCSL\\.B\\d{1,6}|LVUR\\.(\\d{9}|\\d{11})|MTROC\\.C\\d{1,6}|NLNHR\\.\\d{8}|NOFOR\\.\\d{9}|PLKRS\\.\\d{10}|PTIRNMJ\\.\\d{9}|ROONRC\\.[CFJ](\\d{1,2}/\\d{1,6}/\\d{4}|\\d{13})|SEBOLREG\\.\\d{10}|SIPRS\\.\\d{7}0{3}|SKORSR\\.\\d{1,18})$"^^ . "http://sweetontology.net/stateRoleGeographic/$1"^^ . . . "Online Dictionary"^^ . . "SWEET Ontology Phenomena Wave Noise" . "openWEMI is a minimally constrained vocabulary for describing created resources using the concepts of Work, Expression, Manifestation, Item."^^ . . . . . . "SoyBase is a repository for curated genetics, genomics and related data resources for soybean."^^ . . "https://osdr.nasa.gov/bio/repo/data/payloads/"^^ . . . . . . . . "http://vocab.getty.edu/page/cona/"^^ . . . . . . . . "structure" . "max@soe.ucsc.edu" . "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$"^^ . "sensory stimulation" . . "Cell Image Library" . . . . . . "Scholarly Contributions and Roles Ontology" . . "chenyuzong@sz.tsinghua.edu.cn" . "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$"^^ . . "^[\\w\\-:,]{3,64}$"^^ . . . . "rnavdb" . . "^\\d{7}$"^^ . "https://mediadive.dsmz.de/medium/$1"^^ . . . . "http://rs.tdwg.org/acsubtype/$1"^^ . "digital image processing" . . . "00000001"^^ . . . "This ontology extends the SAREF ontology for the water domain. This work has been developed in the context of the STF 566, which was established with the goal to create three SAREF extensions, one of them for the water domain."^^ . . "0000015"^^ . "false"^^ . . . "roberts@neb.com" . "https://purl.org/fmi-ontology#$1"^^ . "Protocol for Web Description Resources (POWDER) Schema" . "https://vocabularies.cessda.eu/vocabulary/CountryNamesAndCodes?lang=en#code_"^^ . "sophft" . . . . "false"^^ . . "grouping" . "literalForm"^^ . . . . "agriculture" . . . . . "Chinese Biological Abstracts" . . . . . . "https://bioregistry.io/bpdb:"^^ . . "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm"^^ . . . "obo" . . . "plant phenotypes and traits" . . "Paolo Romano" . . . "Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).\n\nLandis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. International Conference on Biomedical Ontology 2022 (ICBO 2022). https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_2172.pdf"^^ . . "false"^^ . . . . . . . . "3d structure" . . . . . "^[A-Z-_0-9]+$"^^ . . . . . . . . "nucleic acid sequence" . . . "life science" . . . . . . . _:Nfb81251a0f224fa19ece22b626626d5b "kpetersen@who.int" . "pmp" . . . "GenProp0699"^^ . "Cell line collections (Providers)"^^ . . "false"^^ . . . . "https://openalex.org/$1"^^ . "si" . "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information."^^ . . "dna" . "chemical compound" . . . . . "structure" . . . . . "genome/gene" . . . . . . . . "A precursor that was later replaced with the Creative Commons Rights Expression Language (ccREL)"^^ . "false"^^ . . "w3" . "mice" . . "^jRCT\\w?\\d+$"^^ . . . "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways."^^ . "http://sweetontology.net/stateTime/$1"^^ . "http://purl.obolibrary.org/obo/ORNASEQ_"^^ . . . "true"^^ . "Linked open terminology resources" . . "affy.probeset" . . . . "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding."^^ . "dna" . . "false"^^ . . "protein name" . "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$"^^ . . . "open educational resources" . "nlx.anat" . . "false"^^ . . . . . "ontology" . "jerven.bolleman@isb-sib.ch" . "COB brings together key terms from a wide range of OBO projects to improve interoperability."^^ . "7dfd3f10-d410-45a4-983d-8fbd6dfbc374"^^ . . . "Endogenous Regulatory OligoPeptide knowledgebase-Moscow" . . . . . "^\\d{6}$"^^ . "dna" . . "58"^^ . . "http://www.humanproteomemap.org/protein.php?hpm_id=$1"^^ . . "Chemical Entity Materials and Reactions Ontological Framework" . . "DI" . . . . . "http://www.w3.org/2003/05/owl-xml#$1"^^ . "MarkerDB" . . . "https://bidd.group/NPASS/compound.php?compoundID="^^ . . . . "TyPon provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field."^^ . . "false"^^ . . . . "false"^^ . . "health science" . "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community."^^ . "false"^^ . . . "heart" . "vmh.reaction" . "has canonical" . . . "reagent" . "PicTar" . . . "noemi.betancort@suub.uni-bremen.de" . . . . . . . . . . "reagents" . . . . . "engineering science" . . "ucum" . . "Perry Miller" . . "Backus-Naur form" . "small molecule" . "false"^^ . . "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1"^^ . "structrual bioinformatics" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Boundary Layer"^^ . . "false"^^ . . "taxon" . "FungiDB" . "CASID" . "eurofir" . . "https://www.linkedin.com/in/$1"^^ . "^\\d+$"^^ . . . . "https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/"^^ . "protein" . . "ontology" . "false"^^ . "^\\d+$"^^ . "ontology" . . "nathan.baker@pnnl.gov" . . . "DLayer"^^ . . "structure" . "^\\d+$"^^ . . "traffic engineering" . . "^\\d+$"^^ . . . . . "Clinical Trials Information System" . . . "fyeco" . "MITE0000001"^^ . . "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id="^^ . . "pdbechem" . . "false"^^ . "computer science" . . . "chebi" . "transcriptomics" . "biomarkerkb.canonical" . . "Provenance Information for Materials Science Ontology - Computational Module" . "health/disease" . "SKOS-Modellierung des Thesaurus FINDEX Raum des Fraunhofer-Informationszentrums Raum und Bau IRB"^^ . "A vocabulary for describing the usage of land cover (e.g., pasture, wetlands, barren, forest, water) extended from the original 16 land cover classes proposed by the [Anderson Level II classification system](https://doi.org/10.3133/pp964) in 1976"^^ . "https://fairsharing.org/" . "Human Gene Mutation Database" . "false"^^ . . . . "genome map" . "CAS_RN" . . . . . . "3d structure" . . "physics" . "SWEET Ontology State Space Scale" . . . "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T"^^ . . . . . . "false"^^ . "sbml" . . . . . "ddi.timezone" . . . "false"^^ . . . . "Linked Archaeological Data Ontology" . . "Doug Howe" . "false"^^ . . "Daniel Himmelstein" . "^\\d+$"^^ . . "nfdi4ing" . "^\\d+$"^^ . "life science" . "ess" . "https://www.wormbase.org/db/seq/protein?name=$1"^^ . "CurrentSheet"^^ . . "ddinter.interaction" . "image" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Distance"^^ . "developmental biology" . . "ontome.namespace" . . . "structure" . . "metabolite" . . . . "vann" . "EntrezGene" . "DFG Fachsystematik Ontology / DFG Classification of Subject Areas Ontology (DFGFO) encodes the DFG Classification of Subject Areas into an ontology, where each subject number are is enconded into a Class with subclass statements following the DFG Classification of Subject Areas hierarchy. Labels are provide German and English."^^ . . "https://cropontology.org/rdf/CO_370:$1"^^ . "Stephen R. Heller" . . . . . "nfdi4chem" . "transport" . "Sylvie Ricard-Blum" . "https://bioregistry.io/geonames.feature:"^^ . . . . . "mirTarBase" . . . "Dominik Martinat" . "xenobiotic metabolic process" . . "http://sweetontology.net/phenSystemComplexity/$1"^^ . "false"^^ . "life science" . . . . . . . . . . "http://sweetontology.net/phenOceanDynamics/$1"^^ . "google.patent" . "life cycle stage" . . . "^PA\\d+$"^^ . . "117395"^^ . "https://flybase.org/reports/FBtc"^^ . _:Ne8ec8e36980f43e18553e88cff205c68 . . . . "bibliography/documents" . "^[A-Za-z]+$"^^ . . "false"^^ . . "miR-1"^^ . "SciProfiles" . "https://purl.org/fidbaudigital/subjects#$1"^^ . "https://abrc.osu.edu/stocks/number/SALK_"^^ . . . "tdwg" . "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"^^ . "https://deims.org/sensors/"^^ . _:N68b464b802c8499794da975d16983e4b "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . "materials" . "false"^^ . . . . "10193"^^ . . . . "Biolink Model Registry" . . . "SWEET Ontology Phenomena ElectroMagnetic" . . . "pathway" . "reactome" . . "false"^^ . . "false"^^ . . . "https://vocabularies.cessda.eu/vocabulary/TimeZone?lang=en#code_$1"^^ . "COG Pathways" . . "03yrm5c26"^^ . "nmrshiftdb2" . . "orientation"^^ . "https://togoid.dbcls.jp/#$1" . "sweet.propsp" . "evidence tiers" . . . . "computer science" . . . "false"^^ . . "false"^^ . . . "0000001"^^ . . . "https://www.uniprot.org/journals/"^^ . . . "organism-specific databases" . . "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"^^ . . . "https://bioregistry.io/bykdb:"^^ . . "true"^^ . . "Erik.Segerdell@cchmc.org" . . . . . . . "animal breeding" . . . "false"^^ . . . . . . "astd" . . "https://vocabularies.cessda.eu/vocabulary/ModeOfCollection?lang=en#code_"^^ . "https://www.ebi.ac.uk/metagenomics/projects/"^^ . . . . . "ISO 3166-1 alpha-2 country codes and names."^^ . . "DrugBank Condition" . . . "icd10cm" . "ontology" . . . . "http://www.w3.org/ns/sosa/"^^ . . . . "John L. Markley" . "Gajendra P. S. Raghava" . . "false"^^ . "^\\d+$"^^ . . . "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.\n\nThe original structure of the histopathology ontology was designed ab initio when the [INHAND](http://www.goreni.org/) manuscripts were not available. However, the ontology has been repetitively reviewed and updated to align with the subsequently published INHAND manuscripts. During this process cross references to INHAND lesion identifiers were added to the ontology. [from GitHub]"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Climate Zone"^^ . . . . . "NCIT" . "TOKU-E Cell-culture Database" . "phenotype" . "^\\d+$"^^ . . . . . . "https://florabase.dpaw.wa.gov.au/browse/profile/$1"^^ . "ProtClustDB" . . . . . . . . . "CE28239"^^ . "developmental biology" . . . "false"^^ . . . "S1295"^^ . . . . . . "Michel Dumontier" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena ElectroMagnetic"^^ . "20512"^^ . "proteomics" . . "DNASU Plasmid Repository vector" . . "pdumdv" . . "brainwave entrainment" . "researcher" . . "biomedical science" . . "HMDB00001"^^ . . "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$"^^ . "fisheries science" . "Lozana Rossenova" . . . . . "Kevin Boske" . "https://www.holofooddata.org/sample/$1"^^ . . . "101"^^ . . . . "plant genetics" . "false"^^ . "computer science" . "Common Greenhouse Ontology" . . . "congenic rat" . . . "agriculture" . . . "false"^^ . . . . "http://www.gramene.org/db/literature/pub_search?ref_id=$1"^^ . . . . . . "next generation sequencing" . . . . "^(imp|gen)\\d{5}$"^^ . "energy flux" . "^PRO_[0-9]{10}$"^^ . . . . . . "medicine" . "^\\d+$"^^ . "Integrated Microbial Genomes Gene" . . "3d structure" . . "experimentally determined" . "true"^^ . "false"^^ . . . . . "genome" . . "ontology" . "UniProtKB_VAR" . "http://edamontology.org/format_"^^ . "https://www.ncbi.nlm.nih.gov/sra/$1"^^ . . "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . . "https://coicatalogue.uc.pt/index.php?t=specimen&COINumber=$1"^^ . . . . "deims.network" . . "disease" . . "GL50803_102438"^^ . . "institutional repository" . "Registered Organization Vocabulary" . "A field appearing in the data of the UK BioBank, like 'time spent outdoors in the summer'"^^ . "protein structure" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Day"^^ . "skip" . . . "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1"^^ . . . . "Marie-Paule Lefranc" . . "danbri@w3.org" . . "immunology" . "false"^^ . "Uniprot Core Ontology" . . "A representation of variables appearing in models in the environmental research space."^^ . "https://nfdi.fiz-karlsruhe.de/nfdi4dso/"^^ . . "https://reactome.org/content/detail/"^^ . . . . "Vitis Ontology" . "http://www.geneontology.org/doc/GO.xrf_abbs:"^^ . . . . . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . "phylogenetics" . . "sequence" . "A collection of graphics that relate to a theme"^^ . . "realm" . . . "false"^^ . . "do12@sanger.ac.uk" . "https://smc.jgi.doe.gov/sources/$1"^^ . "hasDbXref"^^ . "^[WAICV]\\d{2,}$"^^ . "Gene Ontology Rules" . . "dna" . . "Matthew B Jones" . "sound" . "disease" . . "http://purl.org/vocommons/voaf#$1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock"^^ . "aspgd.protein" . . "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources."^^ . . "http://purl.obolibrary.org/obo/CIO_$1"^^ . . "The first number is the chapter then the remainder are subsections."^^ . . "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1"^^ . "https://www.uniprot.org/journals/$1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships"^^ . "ConfIDent Event Series" . . . "false"^^ . . . "BioContext" . . . . "ontology" . . . . . . . . . "nif" . . . "http://eol.org/schema/terms/$1"^^ . . "cancer" . "FAIRmat Collection" . . . . "^\\d+$"^^ . . . "ferroliganddb" . . "cryosphere" . "iceberg.ime" . "https://www.fisheries.noaa.gov/species/$1"^^ . . "bioinformatics" . "http://www.bootstrep.eu/ontology/GRO#"^^ . "A collection of ontologies, controlled vocabularies, and schemas relevant for the FAIRmat Consortium seeded from corresponding the [TIB OLS collection](https://service.tib.eu/terminology/collections/fairmat)." . . . "repository" . . "obci" . "chemistry" . "openadr" . . "false"^^ . "^\\d{8}$"^^ . "https://www.npmjs.com/package/$1"^^ . . . "ontome.profile" . . "^\\d{7}$"^^ . "ontology/terminology/nomenclature" . "^\\d+$"^^ . . . . "image/movie" . . "experimental condition" . "false"^^ . . "CRISP" . . . . . . . "http://purl.obolibrary.org/obo/PREFER_"^^ . . . "false"^^ . "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century."^^ . . . . . "^\\d+$"^^ . . . "http://purl.obolibrary.org/obo/CLO_"^^ . . . . "umbbd" . . "GND stands for \"Gemeinsame Normdatei\" (Integrated Authority File) and offers a broad range of elements to describe authorities. The GND originates from the German library community and aims to solve the name ambiguity problem in the library world."^^ . . "classification" . "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1"^^ . . "https://pephub.databio.org/$1"^^ . . "true"^^ . "false"^^ . . "https://www.ncbi.nlm.nih.gov/dbvar/variants/"^^ . . "earth sciences" . . "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."^^ . . . . . "https://scholar.google.com/scholar?cluster="^^ . "protein" . . "false"^^ . . "nfdi4energy" . . . "Sam Seaver" . "he WOT, or Web Of Trust, schema is designed to facilitate the use of Public Key Cryptography tools such as PGP or GPG to sign RDF documents and document these signatures."^^ . "1837"^^ . . "http://purl.obolibrary.org/obo/ONTOAVIDA_$1"^^ . . "http://id.loc.gov/vocabulary/contentTypes/$1"^^ . "meetings" . "omics" . . . "gc" . "tcia.collection" . . "PubMed Central" . . "ae8c77fe-e6c8-44d5-8265-4a38c637bbef"^^ . "Scientific Event Ontology" . . "Progenetix" . . "expression data" . "http://sweetontology.net/phenAtmoWind/"^^ . . . . "soprop" . "phenomena" . . "alteration" . . . . "Database of Quantitative Cellular Signaling: Model" . "vibrotactile stimulation" . "HEPRO is an ontology of informational entities and processes related to health procedures and health activities."^^ . . "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."^^ . . . . "transcription factor" . "http://www.w3.org/ns/ssn/systems/"^^ . . "DarcyFlux"^^ . "sostc" . "^\\w{3}\\d+$"^^ . "true"^^ . . . . . . "CHEBI" . "transposable element" . . . . . "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information."^^ . . _:N821762d7d2b041d5ad288e7eb5331d50 "Hossein Beygi Nasrabadi" . "protein-containing complex" . . "paralogons" . "obo" . . . . "^[a-zA-Z0-9_\\.]+$"^^ . . "false"^^ . . . "ontology" . . "mental health" . . "true"^^ . "Raras Brazilian Rare Disease Knowledge Graph" . . . . . . . . "false"^^ . "nfdi4ing" . . "microbiome" . . . "false"^^ . "Small Angle Scattering Biological Data Bank" . "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information."^^ . . . . "Identifiers in the GTN correspond to training materials in various formats (markdown, slides, video). The users can apply learned concepts directly within the framework via galaxy workflows."^^ . . "https://finto.fi/"^^ . . "http://purl.obolibrary.org/obo/IMR_"^^ . . . . . "cell culture" . "http://purl.obolibrary.org/obo/HTN_$1"^^ . "https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1"^^ . . "false"^^ . . "^\\d+$"^^ . "C"^^ . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . . "family and domain databases" . . "rna" . . "false"^^ . "false"^^ . "structure" . . . "b97957"^^ . . "dna" . . "http://www.peptideatlas.org/PASS/$1"^^ . "ontology" . "registry" . "false"^^ . . . "cvdo" . . "false"^^ . "biology" . "life science" . "https://gdo.endlessforms.info/view/classes?uuid=GDO_$1"^^ . "ATTC" . "https://www.storedb.org/?STOREDB:DATASET"^^ . "http://purl.obolibrary.org/obo/APO_"^^ . . . "^[A-Za-z0-9_\\-]+(/[A-Za-z0-9_\\-]+)?$"^^ . "SWEET Ontology Relationships Climate" . "rna" . "OTTHUMG00000169812"^^ . "false"^^ . . "false"^^ . . "chemistry databases" . "RNA Modification Database" . "gene model annotation" . . . . "cell" . . "Properties in DBPedia."^^ . "224308.179"^^ . . . "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=$1"^^ . . "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information."^^ . . "raras.property" . "expression" . "false"^^ . . . "Modern Science Ontology" . . "http://purl.org/oban/$1"^^ . "ontology" . . "wormmart" . "author" . "sfam" . "cell biology" . "false"^^ . "chemistry" . . . . "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways."^^ . "false"^^ . "AssignStatement"^^ . "mzspec" . "coypu" . "Wikipedia" . "ecg" . "method" . "enzyme and pathway databases" . "element" . . . . . . . . . "1693"^^ . "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility."^^ . "false"^^ . "16129"^^ . "https://lattes.cnpq.br/"^^ . . "false"^^ . "chemistry" . . "A schema describing users in Interconnect"^^ . . . "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1"^^ . "https://purl.org/nfdi4plants/ontology/dpbo/DPBO_$1"^^ . . "false"^^ . . . . . . . . "obo" . "https://impi.omicsbio.info/detail?sorfid="^^ . "kegg" . . . . "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information."^^ . . "physical" . . . "Philippine Health Research Registry" . "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1"^^ . . . "https://w3id.org/oc/meta/$1"^^ . "funderregistry" . . . . . . "7123"^^ . . . . "obo" . . . . . . "http://purl.phyloviz.net/ontology/typon#$1"^^ . . "false"^^ . . . . "tgma" . . "MGYG000004903"^^ . "disease" . "pombase" . "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D."^^ . . "false"^^ . . "http://purl.obolibrary.org/obo/MAXO_$1"^^ . "Andreas Ledl" . . . "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected."^^ . "HL7 V2 Code System" . "https://vocabularies.cessda.eu/vocabulary/rexdatatype?lang=en#code_"^^ . "dna" . . . "fid baudigital" . . . "false"^^ . . "https://ferr.gulab.org.cn/browse/$1"^^ . "sosttg" . . . . . . . "chembiosys.study" . "model" . "obo" . . . . . . . . "true"^^ . . . . . "https://id.loc.gov/datatypes/"^^ . . . "Cell line databases/resources"^^ . "false"^^ . . . "false"^^ . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes."^^ . . . "interaction/pathway" . "ddi" . . . . . . . . . . . "wosuid" . "http://sweetontology.net/phenHelio/$1"^^ . . . . . . . "steve.baskauf@vanderbilt.edu" . "Starting in the 1950s the International Labour Office has developed an International Standard Classification of Occupations (isco) allowing classification of occupational activities worldwide. Naturally, this system is not intended to deal with historical information. In recent years, a group of historians and sociologists have started to build upon the 1968 version of isco to create a classification scheme for occupational titles in the 19th and early 20th centuries, called hisco (...). It is tailored to cope with historical changes in the production process, and allows storage of information on product and status that could not be accommodated in isco. Large historical databases from which the hisco-data are taken and the international association of historians working on censuses have already agreed to adopt it, an many individual researchers are expected to do so as well.\n\nAltogether, the HISCO scheme was originally based on the coding of the 1,000 most frequent male and female occupational titles in datasets from eight different countries: Belgium, Britain, Canada, France, Germany, the Netherlands, Norway and Sweden. The occupational data which were employed to develop the scheme span the period 1690-1970, but are mostly from the nineteenth century. They contain titles declared by or recorded for people of all ages in parish and civil registration documents. The data used to create HISCO encompass the largest country in western Europe, the world’s first industrial nation, the two most influential of the Scandinavian territories, and a newly-settled region of French-Canada. This, and an emphasis on variations within economies in sampling design, ensures that they provide a good mix of agricultural, industrial and commercial activities, of old and new technologies, of traditional and modern forms of organization. Moreover, the inclusion of two French-speaking populations, and a further region in which the official language was French, provides an effective test of the HISCO scheme’s sensitivity to the relationship between language and meaning. Nevertheless, the scheme is currently limited in coverage to the Northern European and Atlantic economies. Future development of the scheme will broaden its scope. To this end, the coding of new data into HISCO is being undertaken in several other countries.\n\nThe History of Work Information System has a coding section that helps users code their data in HISCO, and thus both make it comparable to other datasets, and make it of use to other scholars. The Provenance file lists all contributors to the HISCO-database."^^ . . . . . . . "biomedical science" . . "Ontology to model processes"^^ . . . "cell regeneration" . . "mizrachi@ncbi.nlm.nih.gov" . "Antony Williams" . "b.gyori@northeastern.edu" . . . . "https://hl7.org/fhir/us/$1"^^ . . "Cell line collections (Providers)"^^ . . . "skosmos-server" . "http://purl.obolibrary.org/obo/GOREL_"^^ . . "http://www.icd9data.com/getICD9Code.ashx?icd9="^^ . . . . . . . "https://smpdb.ca/view/"^^ . . "http://purl.obolibrary.org/obo/MPATH_"^^ . "^\\d+$"^^ . "https://w3id.org/kim/isced-2011/level"^^ . . . . . "phyloviz.typon" . . "GCF_000005845.2"^^ . . . . . "false"^^ . . . . . "https://www.re3data.org" . "dialnet.book" . . . . . . . "General Multilingual Environmental Thesaurus Concept" . "Carlos Moreno" . "Genome assembly database - INSDC accessions" . . . "biomedical science" . "genetic variation" . . . . "^\\d{5}$"^^ . "UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries."^^ . . . "http://bio2rdf.org/affymetrix:$1"^^ . . . . . . . . . . "MultiCellDS collection" . . "biology" . . . . . . . "false"^^ . "7646"^^ . . . "cstr" . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id="^^ . . "nbrc" . "genome/gene" . "identifier for a plant metabolite in the Vietherb database"^^ . . . "miscellaneous" . . . "^\\w+$"^^ . "Chandu Nainala" . . . "https://w3id.org/eo#"^^ . "swrl" . "structure" . "engineering" . "atmosphere wind mesoscale" . "^\\d{7}$"^^ . . . "AGRO" . . . . "genome" . "http://sweetontology.net/reprDataServiceAnalysis/$1"^^ . "Al Kikhney" . "https://vocabularies.cessda.eu/vocabulary/rexconcepts?lang=en#code_$1"^^ . . . "false"^^ . "Property"^^ . "https://purls.helmholtz-metadaten.de/prima/computational#"^^ . . . . "isni" . "bibliometrics" . "https://bioregistry.io/tkg:"^^ . . . . "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1"^^ . . . "false"^^ . . . . "false"^^ . "https://bioregistry.io/whg:"^^ . . "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . "false"^^ . "dbEST" . "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein="^^ . . . "nfdi4ing" . "European Bank for induced pluripotent Stem Cells" . . . "jpalmeida@ieee.org" . . "state storm" . . . . . . . . . "ontology" . "genetic interaction (sensu unexpected)" . "false"^^ . "LDTP03903"^^ . "^\\d+$"^^ . "gary.bader@utoronto.ca" . "false"^^ . "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)).\n\nWhile it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" . . . . "true"^^ . . . "Megan S. Kane" . "The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model."^^ . "^[sS][dD][yY]\\d+$"^^ . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes."^^ . . "https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term="^^ . "Abundance"^^ . . . "protein" . "Odor Molecules DataBase" . . "Heike Fliegl" . . . "^\\d{7}$"^^ . . . . "UniPathway Compound" . . "gesis.rexdatatype" . . . "https://proteininformationresource.org/cgi-bin/nbrfget?uid=$1"^^ . . . . "https://bioregistry.io/chemicalbook:"^^ . . "https://morpheus.gitlab.io/models/"^^ . . . . . "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . . . . "A specific vector technology"^^ . "nfdixcs" . "ontology" . "false"^^ . . . "false"^^ . . . "tak-kiuchi@umin.ac.jp" . . "false"^^ . . . . . . . . . . "false"^^ . "gene" . "nfdi4ing" . . "classification" . . "http://sweetontology.net/stateTimeGeologic/"^^ . . . . "^\\d{6}$"^^ . . . "This document describes a vocabulary for annotating descriptions of vocabularies with examples and usage notes."^^ . . . "has identifier space owner" . "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids."^^ . . . "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)."^^ . "foundational ontologies" . "Fahim Imam" . "https://vocabularies.cessda.eu/vocabulary/LanguageProficiency?lang=en#code_"^^ . "organ" . "Mouse Brain Atlas" . "http://w3id.org/nfdi4ing/metadata4ing#$1"^^ . "Noura Rayya" . . "false"^^ . "science" . "omics" . . "http://purl.obolibrary.org/obo/MF_"^^ . . "^[a-z]{3}-[a-km-z0-9]{7}$"^^ . "LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry."^^ . "BioBank_acrotrichis"^^ . . . . . . . . . . "jgrethe@ucsd.edu" . "false"^^ . "D0N5OV"^^ . . . "ontology" . . "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace."^^ . "Signaling Gateway" . . . "ontology" . . . "0000001"^^ . . . "ontology" . . . . "murphyte@ncbi.nlm.nih.gov" . . "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment."^^ . . "comparative genomics" . "ontolex" . "ontology/terminology/nomenclature" . "package/8ca67504-3167-4cc8-ba74-98137bb7cd0a"^^ . . . . . "92"^^ . . "http://id.loc.gov/vocabulary/mprojection/"^^ . . . "https://w3id.org/def/openadr#"^^ . "proteomics" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Scale"^^ . . "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . . . . "NCBI Bookshelf" . . "false"^^ . "Mutant Mouse Resource and Research Centers" . . . . . . . "gene" . . . . . "ChemBioSys Study" . . . . . . . "false"^^ . . . . "gramene.reference" . "ontology" . . . . . "false"^^ . "National Center for Biotechnology Information Registry" . . . . "ma" . . "loc" . . . . . "Jeffrey Grethe" . . . . . . . "open educational resource" . "atol" . . . . . "disease course" . "https://registry.bio2kg.org/resource/$1" . "genome/gene" . . . . . . . "1251"^^ . . "smiles" . . "Guangshun Wang" . "literature" . . . . . "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession="^^ . "protein" . "false"^^ . . . "ClimaticCondition"^^ . "0000389"^^ . "false"^^ . . "glycomapsdb" . . "Yaroslav Halchenko" . . "http://www.w3.org/ns/dqv#$1"^^ . . . "E12768"^^ . "gene" . "false"^^ . "https://pubchem.ncbi.nlm.nih.gov/cell/$1"^^ . "The Cancer Imaging Archive" . . . "http://sweetontology.net/reprDataServiceGeospatial/"^^ . "iirds.core" . . . "https://saref.etsi.org/saref4ehaw/$1"^^ . "http://sweetontology.net/reprMath/"^^ . . "MJoachimiak@lbl.gov" . "http://purl.obolibrary.org/obo/PCO_$1"^^ . "ontology" . "metaregistry" . . _:N73e0b9782669416a9c3c40396c980c5a "WHO Collaborating Centre for Drug Statistics Methodology" . "georgeta.bordea@u-bordeaux.fr" . "hendrik.borgelt@tu-dortmund.de" . . . "^EBI\\-[0-9]+$"^^ . . "^([A-Z]+)?\\d+(\\.\\d+)?$"^^ . "sequence" . . . . . "ac.subtype" . . "https://go.drugbank.com/bio_entities/"^^ . . . . . . "ontology/terminology/nomenclature" . . "^(CN)?\\d{2,7}$"^^ . . . "^\\d+$"^^ . . . "prediction and recognition" . . . . . . . . . "Assigns identifiers to collections of datasets indexed by CELLxGENE.\n\nCELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types."^^ . . "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip"^^ . "biomedical science" . . . "false"^^ . . "molecular interaction" . . . "NAPP (Nucleic Acids Phylogenetic Profiling) is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters."^^ . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes."^^ . . . . "ontology" . "biomodels.kisao" . . "neuroimaging measurement" . . "NONCODE v3" . . "34665743"^^ . . "small molecule" . "^AT[1-5]G\\d{5}(\\.\\d+)?$"^^ . "https://www.antibodypedia.com/supplier_details.php?supplier_id=$1"^^ . "Description of the relationship of the resource being registered (A) and the related resource (B)."^^ . "orthologous genes" . "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records."^^ . "^EGAD\\d{11}$"^^ . "1150"^^ . . . . . . . "0000062"^^ . "BandLimited"^^ . . "0002233"^^ . . . "^\\d{7}$"^^ . . "^\\d+$"^^ . . . . "iri"^^ . . "mutation" . . . "bridgedb" . "^URS[0-9A-F]{10}(\\_\\d+)?$"^^ . "CEMS"^^ . . . "chemical entity" . . "https://ocid.ontochem.com/prefname?ocid=$1"^^ . "genome" . "Elementary Multiperspective Material Ontology" . "PA447218"^^ . "false"^^ . . "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration)."^^ . . . . . "http://spinrdf.org/spin#$1"^^ . . "An ontology used to enable annotating geospatial semantic information to entities in GeoNames"^^ . "ontology" . . . "DALIA Community" . . "false"^^ . "A vocabulary of taxonomic ranks (species, family, phylum, etc)"^^ . "false"^^ . . "false"^^ . "LOC_Os01g49190.1"^^ . . . . "http://purl.obolibrary.org/obo/ERO_"^^ . "chemical entity" . "Cell line databases/resources"^^ . "ontology" . . . "SWEET Ontology Relationships" . . . "EDCC Taxonomy contains the terms that are used to classify citizens' requests to the Europe Direct Contact Centre (EDCC). EDCC Taxonomy is maintained by the Directorate-General for Communication of the European Commission and published by the Publications Office of the European Union on the EU Vocabularies website."^^ . . "cdna/est" . "literature curation" . . "fid move" . . . . "^\\d+$"^^ . . . . . . "edam.topic" . . "http://purl.obolibrary.org/obo/ONE_$1"^^ . "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome."^^ . "SWEET Ontology Representation Mathematics Operation" . . "https://nfdi4culture.de/id/"^^ . . . "phenomena" . . "food" . . . "^\\d+$"^^ . . "genetic polymorphism" . . . "The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections."^^ . "0000111"^^ . . "The BONSAI ontologies provides elements of description for product footprint concepts defined in the bonsai.uno data base"^^ . . "The DevTox Project harmonizes the nomenclature used to describe developmental anomalies in laboratory animals, assists in the visual recognition of developmental anomalies with the aid of photographs, and provides a historical control database of developmental effects in laboratory animals."^^ . "https://fairsharing.org/users/$1"^^ . . . . . . "genome" . . . . . . "0000254"^^ . . "http://ontology.tno.nl/transport#"^^ . "Be"^^ . . . . . "^M\\d+$"^^ . . "malaria" . . "B10000000000_3"^^ . . "proteome" . . . "false"^^ . . . "fernanda.dorea@sva.se" . . . "None"^^ . "The Digital Competence Framework for Citizens standard list identifies the key components of digital competence in 5 broader, and a total of 21 narrower areas, with eight proficiency levels for each concept and a few contextualising examples of use. It is maintained by DG EMPL and published by the Publications Office of the European Union on the EU Vocabularies website."^^ . . "ontology" . "saref.environment" . "protein" . . . "applicableLegislation"^^ . . . . . . "Montana Smith" . . "false"^^ . . . . "francesco.vitali@ibba.cnr.it" . . . "Includes a typology of data sources."^^ . . . "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract)."^^ . . "0000001"^^ . "cordis" . . . "0000618"^^ . . . . . "nfdi4ing" . . . . . . . . "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web."^^ . "ontology" . . . . . . "ontology" . . . "data identity and mapping" . . . "http://www.w3.org/2002/07/owl#$1"^^ . "false"^^ . . "Building Ontology" . . "obo" . . "jupp@ebi.ac.uk" . "^U\\d+$"^^ . . . . . . "false"^^ . "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information."^^ . "false"^^ . "false"^^ . "Arrow"^^ . . . "The German Clinical Trials Register (DRKS) is the German WHO primary registry. It is competent for the registration of all patient-oriented clinical trials conducted in Germany. The DRKS now contains well over 14,000 studies. Currently, around 2,000 studies are added annually. (from website)"^^ . "E4330"^^ . . . . "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1"^^ . . "false"^^ . "Val Wood" . . . . "kegg.compound" . . "^\\d{7}$"^^ . . "https://web.www.healthdatagateway.org/dataset/"^^ . . . . . . . "Immune Epitope Database Epitopes" . "https://data.gesis.org/thesoz/concept_$1"^^ . . . "peptide" . . . . . . . "https://absd.pasteur.cloud/antibody/"^^ . . . . . . . . . "https://www.rrrc.us/Strain/?x=$1"^^ . . "^\\d{5}$"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Scientific"^^ . . "post-translational protein modification" . . . . . . . _:Nad2ebeb5178b49579cc00fcaccb4be4f "Allen Institute for Brain Science" . . . "https://sorgerlab.github.io/famplex/$1"^^ . "ctd.disease" . . "https://www.nfdi.de/wp-content/uploads/2021/12/PUNCH4NFDI-Logo_RGB.png"^^ . "MEROPS Entry" . "http://biohackathon.org/resource/faldo#$1"^^ . . . . . . . . . "life science" . . "188"^^ . "SNOMEDCT_US_2021_07_31" . "antoine.danchin@normalesup.org" . . "multicellds.cell_line" . . "http://cor.esipfed.org/ont/SWL_$1"^^ . "U.S. Education Level Vocabulary" . "Vendor for assays, cells, and antibodies"^^ . "chris.ponting@ed.ac.uk" . "Aqueduct"^^ . . "false"^^ . . . . "C4"^^ . . . . "TreeHub" . . . . . . "geonames" . "false"^^ . "omop" . . "false"^^ . . "https://dbpedia.org/ontology/$1"^^ . . "false"^^ . . . "sjwang@mcw.edu" . . "false"^^ . "Bioregistry Collections" . . . . . "false"^^ . "Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries."^^ . "Kevin Drew" . . "The SustainGraph ontology is developed to track the United Nations Sustainable Development Goals(SDGs) at national and regional level, their evolution accross time and inter-connectedness with existing and emerging policies and directives at European Union (EU) and global level. It is described using W3C RDF Schema and the Web Ontology Language."^^ . . . . "jgoll@emmes.com" . "true"^^ . . . . "classAtom"^^ . "nddf" . . . "UBPROP" . . . . . . "ribonucleic acid" . . . "soreal" . "MedGen" . "neuroname" . . "ndc" . . . . . . . "false"^^ . . "phenotype" . . "identifier for OpenTrials database over clinical trials"^^ . "open educational resources" . . "811"^^ . "education science" . . . . "false"^^ . "http://swissregulon.unibas.ch/query/"^^ . "^\\d{7}$"^^ . . "false"^^ . . "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information."^^ . . "John Cottrell" . . . . . "saref.grid" . . . . . . "Microbial Conditions Ontology is an ontology..."^^ . . . "rna" . "SWEET Ontology Phenomena Heliosphere" . . . "David Osumi-Sutherland" . . . . "EAWAG Biocatalysis/Biodegradation Database enzyme" . "http://purl.org/spar/pwo/$1"^^ . . "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false®expr=off"^^ . "false"^^ . . . . . . . "bibliography/documents" . . "mass spectrum" . . "software" . . "ontology" . . . . . . . "bioinformatics" . . . . . . "http://sweetontology.net/phenAtmoTransport/"^^ . . . . "0000006"^^ . "grid.225360.0"^^ . . . . . . . . . . "Drug Central" . . "food" . "scopus.affiliation" . "^PF\\d{5}$"^^ . "kim.license" . . . "http://sweetontology.net/propTemperature/$1"^^ . "r3d100010772"^^ . . "http://sweetontology.net/relaPhysical/$1"^^ . . . . . "This is the experiment module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . "sperm" . "Open Data for Access and Mining" . . "false"^^ . "https://www.cancerrxgene.org/translation/Drug/$1"^^ . . "AlternateAssessment"^^ . . "Theiler stages (TS) define mouse development by a set of morphological criteria ([Theiler, 1989](https://doi.org/10.1007/978-3-642-88418-4)). This staging scheme is used because embryos at the same gestational age can have developed at different rates and therefore exhibit different morphological characteristics. Theiler stages may in some cases correspond to a single gestation age, but more often cover a range of ages. (from [https://www.informatics.jax.org/glossary/theiler](https://www.informatics.jax.org/glossary/theiler))"^^ . "ess" . . . . "unit" . "An ontology of physical medicine & rehabilitation, physical therapy, occupational therapy, and speech therapy."^^ . . . "digital planning and construction" . . . . . . . . "^\\w+#\\d+$"^^ . "The Bioregistry's meta-registry"^^ . "http://purl.obolibrary.org/obo/PW_"^^ . . . "http://solgenomics.net/phenome/locus_display.pl?locus_id="^^ . . "https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:"^^ . . . . . "resource metadata" . . . "MM00040"^^ . "http://purl.obolibrary.org/obo/RXNO_"^^ . . . . . "gene-disease association" . . . "http://www.ncbi.nlm.nih.gov/clinvar/"^^ . . "Gene Ontology Registry" . . . . "https://data.chembiosys.de/investigations/"^^ . . . "https://doi.org/"^^ . "The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations."^^ . . "false"^^ . "http://archaeology.link/ontology#$1"^^ . . . . . . . "https://www.nfdi.de/wp-content/uploads/2025/02/aktuelles_logo_02.25.png"^^ . . . "false"^^ . . . "Geförderte Projekte Informationssystem" . "proteome" . "realm" . "^\\d+$"^^ . . "MetaNetX reaction" . "odamexplorer" . . . "1"^^ . "false"^^ . . . . "bsweeney@ebi.ac.uk" . "gx" . . "true"^^ . "18030"^^ . _:Nb40d9510788a406ba8e3cf0e638844fa "ICD Helpdesk" . "http://emmo.info/emmo/cif-core#"^^ . . "http://aims.fao.org/aos/agrovoc/c_$1"^^ . . . "growth profiles" . . . . "usageNote"^^ . . . "Logical Observation Identifiers Names and Codes" . . . "climate" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Cloud"^^ . "genome annotation databases" . "0000001"^^ . . "deims" . "function" . "Website with general information about Arabidopsis and functionalities such as a genomic viewer"^^ . . "Cell line collections (Providers)"^^ . "ncrna" . "Space"^^ . "cio" . . . . . . "metadata" . "true"^^ . . "http://www.ebi.ac.uk/astd/geneview.html?acc=$1"^^ . "Ontology representation of the [International Committee on Taxonomy of Viruses (ICTV)](https://ictv.global/) for the [EVORA project](https://evora-project.eu/)"^^ . . . . . . . "small molecule" . "sequence motif" . "ncrna" . "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code="^^ . "https://www.ebi.ac.uk/pride/archive/projects/$1"^^ . "KEGG_REACTION_CLASS" . "dbvar.variant" . "http://sweetontology.net/matrFacility/"^^ . "http://www.w3.org/ns/dcat#"^^ . . "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA."^^ . "false"^^ . . "open educational resources" . . "ontology" . . . "http://sweetontology.net/stateChemical/$1"^^ . . . . . "http://bigg.ucsd.edu/models/universal/metabolites/"^^ . "civic" . "dna" . . . . . "NCI Drug Dictionary" . "Larisa Soldatova" . . . "protein" . "cell biology" . "https://w3id.org/def/openadr#$1"^^ . "saref" . . . . . "gene" . . . "sequence" . . . . "C0020004/4992"^^ . "ontology" . "earth science" . "^.+$"^^ . . . . . . "sabiork.kineticrecord" . "^\\d+$"^^ . . "datacite" . "somaem" . . "kenan@ucsd.edu" . "soybase" . "true"^^ . "life sciences, biology" . . . "Chris Hunter" . "nfdi4cat" . . . . . . "^[0-9A-Za-z\\-.\\+]+$"^^ . "Semion author" . "false"^^ . . "false"^^ . . . . . . . . . "0000002"^^ . . "nfdi4chem" . . . "OMA Group" . . . . "https://www.kaggle.com/"^^ . . "ised" . . . . "ontology" . "plant phenotypes and traits" . . . . "DEIMS-SDR (Dynamic Ecological Information Management System - Site and dataset registry) is an information management system powered by eLTER. It allows you to discover long-term ecosystem research sites around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR describes a wide range of sites, providing a wealth of information, including each site’s location, ecosystems, facilities, parameters measured and research themes. It is also possible to access a growing number of datasets and data products associated with the sites."^^ . . "small molecule" . "https://rnaloops.cs.put.poznan.pl/search/details/"^^ . . . "regulatory region" . "dna" . . "https://plantreactome.gramene.org/content/detail/"^^ . "sequence" . . . . "https://knockrbp.xu-bioinfo.com/result_by_datasets/?DatasetID="^^ . "taxonomy" . . "famplex" . "http://www.receptors.org/nucleardb/proteins/"^^ . . . . "The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web."^^ . . . . . "chemistry databases" . . "harukin@protein.osaka-u.ac.jp" . . "false"^^ . . "pharmacodynamics" . . . . . "FHIR External Terminologies" . "david@mbi.ucla.edu" . "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1"^^ . . . . "genetic disorder" . . . . "obo" . . "A vocabulary and ontology repository for agronomy and related domains." . "00005254"^^ . . . . . "false"^^ . "biomedical science" . "David Wishart" . . "veterinary medicine" . . "false"^^ . . "false"^^ . . . . . "CAMEO Chemicals is a database of hazardous chemical datasheets that emergency responders and planners can use to get response recommendations and predict hazards—such as explosions or toxic fumes."^^ . . . _:N381c58b6249b4b41908ba18e816edc24 . "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no="^^ . "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . "chemical structure" . . "environmental science" . . "187021"^^ . . . "anatomy" . "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects."^^ . . "biomedical science" . . . "Adverse Event Reporting Ontology" . "https://w3id.org/metpo/"^^ . . "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays."^^ . . "Language"^^ . . "nfdi4ing" . "ontology" . . "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1"^^ . . . . "johnbeverley2021@u.northwestern.edu" . "bioinformatics" . . . . "clinical trials" . . . . . . . . . "A gazetteer constructed on ontological principles. The countries are actively maintained."^^ . "envipath" . "suprabank" . "SWEET Ontology Realm Geologic Continental" . "false"^^ . . . "bold.taxonomy" . . "^SMP\\d+$"^^ . "PF11779"^^ . . . "Linked Open Vocabularies" . . "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . "http://purl.obolibrary.org/obo/LIPRO_$1"^^ . "false"^^ . "0000487"^^ . . "RHEA" . "ontology" . "103"^^ . "pictar" . "https://bidd.group/NPASS/compound.php?compoundID=$1"^^ . "protein" . "ontology" . "emedicine" . "protein" . "https://w3id.org/reproduceme#"^^ . "ocean floor" . . . . "Haiyun Wang" . . "^DDB\\d+$"^^ . . . "https://entomology.ca.uky.edu/content/$1"^^ . . . . "0010015"^^ . "Library of Congress MARC Countries" . . "molbase" . "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."^^ . . . . . "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease."^^ . . . . "tetrahymena thermophila" . "S7000002168151102"^^ . . . . "drugbank.reaction" . . . . . . . . "classification" . . . "Molecular Interaction Database" . . "EGAD00000000001"^^ . "covid-19" . "gene family" . . . . "protein" . . . . "m.a.laporte@cgiar.org" . . "Molecular Modeling Database" . . . . . "^\\d{7}$"^^ . "https://brickschema.org/schema/Brick#"^^ . "pba" . "biostudies" . "CompositeProcess"^^ . . . . "proteomics" . . "https://hub.docker.com/r/"^^ . . . "obo" . . "gene" . . "^\\d{7}$"^^ . . "protein-protein interaction databases" . "https://w3id.org/kim/isced-2013/$1"^^ . . "ero" . "Disease Drivers Ontology" . "^HGVPM\\d+$"^^ . . . . . "method" . . "Graphic Descriptor Ontology" . "jel" . "^\\d+$"^^ . . . "Based on the classification of occupations (KldB) by the Federal Employment Agency and the Federal Statistical Office from 2010. This in turn is based on the International Standard Classification of Occupations (ISCO) by the International Labor Office (ILO 2008). The KldB was revised and expanded in parts at the Historical Data Center in Halle, making it usable for the classification of historical occupations. More than 44,000 historical occupations are taxonomically classified in the OhdAB and can be sorted into occupational areas, main occupational groups, or variously differentiated occupational groups."^^ . . . . "nfdi4ing" . . "http://sweetontology.net/phenAtmoFront/"^^ . . . "SchemaDefinition"^^ . "https://www.ncbi.nlm.nih.gov/dbvar/variants/$1"^^ . "bibliography/documents" . . . . "compound" . "https://registry.identifiers.org/registry/"^^ . . . "false"^^ . "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1"^^ . . "sophhy" . "true"^^ . . . . "http://purl.obolibrary.org/obo/FOBI_$1"^^ . . "digital curation" . "false"^^ . . . "Lepidoptera Anatomy Ontology" . "^\\d+$"^^ . . . . "miscellaneous" . "OASIS Open Services for Lifecycle Collaboration Core Vocabulary" . . "engineering" . "bibliography/documents" . . "Authenticus" . "plant phenotypes and traits" . "chemical" . "Learning Resource Metadata Innovation Terms" . . . . . "http://www.ymdb.ca/compounds/$1"^^ . "gene" . "atmosphere front" . . . "https://metacyc.org/compound?orgid=META&id="^^ . . "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature."^^ . "sequence annotation" . "materials" . . "A person" . . "Ontology Management Environment" . "bioactive entity" . "environmental science" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Element"^^ . . . "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-"^^ . . "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project."^^ . . "instancesOf"^^ . . . . "^\\d{7}$"^^ . . "suprabank" . . . . . . . "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . . "repository" . "kclb" . . "Database of RNA Junctions and Kissing loop Structures" . . . . . "ecosystem" . "nlx.inv" . "false"^^ . . "osa-miR446"^^ . "http://sweetontology.net/realmGeolConstituent/$1"^^ . . "experimentally determined" . . "soreaa" . "cst.antibody" . "^\\d+$"^^ . "RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database."^^ . . . "false"^^ . . . . "false"^^ . "http://vocabularies.unesco.org/thesaurus/concept"^^ . . . "wave noise" . . . . . "compound" . "false"^^ . . . "classification" . "The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary."^^ . "http://dbpedia.org/resource/$1"^^ . . "true"^^ . . . "https://w3id.org/reproduceme#$1"^^ . . "physics" . "http://synbip.idrblab.net/data/sbp-target-complex/details/$1"^^ . "268"^^ . "environmental science" . "false"^^ . . . "ontology" . "biomedical science" . . . "protein domain" . . "Subset of OeAI Thesaurus focusing on cultural time periods"^^ . "http://purl.obolibrary.org/obo/AISM_$1"^^ . . "^S\\d+$"^^ . . . "https://netmode.gitlab.io/sustaingraph/$1"^^ . "Enzo Life Sciences" . . "bodc.sdn" . "systems biology" . . . . . "atmospheric" . . . "srvoss@uky.edu" . . . . "https://w3id.org/emmo/domain/battery#battery_$1"^^ . . . "MarRef" . . "https://nfdi4culture.de/ontology/CTO_"^^ . . . . . . . . . . "https://terminology.fraunhofer.de/voc/bau#$1"^^ . "false"^^ . "ontology" . . . . "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id="^^ . . . . . . "ontology" . . "http://purl.obolibrary.org/obo/CDNO_$1"^^ . . "ontology" . "emmo.cif" . "phenxtoolkit" . "OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research."^^ . . "KNApSAcK" . "false"^^ . . "ugis@ebi.ac.uk" . . "aireland@lbl.gov" . . "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1"^^ . "false"^^ . . . "bams" . "Rice Annotation Project Database Transcript" . . . "family and domain databases" . "sequence" . . . . "pathway diagram" . "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1"^^ . . . "plasmid" . . "false"^^ . . . "Metabolic Atlas" . "agronomy" . "biochemistry" . "https://chemprosquare.idrblab.net/data/competitor/details/$1"^^ . "https://hub.docker.com/u/"^^ . "http://uri.neuinfo.org/nif/nifstd/nlx_res_"^^ . "civil engineering" . . "ontology" . "ontology" . . "Xian Zeng" . . "sweet.sttf" . "false"^^ . . . . "http://sweetontology.net/phenAtmoCloud/$1"^^ . . "http://www.interfil.org/details.php?id="^^ . "http://purl.obolibrary.org/obo/MFOEM_"^^ . . "https://www.w3.org/2003/11/swrlx#$1"^^ . "Functions for GeoSPARQL"^^ . . . "false"^^ . . "Provenance Information for Materials Science Ontology - Dataset Module" . "false"^^ . . . "ontology" . . "pathoplant" . . "http://sweetontology.net/stateThermodynamic/"^^ . . . . . . . _:Nfe267ce023634d3eba513fe740e002a5 "zimmerly@ucalgary.ca" . "expression data" . . . "LIDO Terminology Actor Type" . "https://www.iedb.org/receptor/$1"^^ . . . . . "false"^^ . "^CFc\\d{9}$"^^ . "anatomy" . . . "chempro.competitor" . . . "false"^^ . . "http://bitterdb.agri.huji.ac.il/Receptor.php?id="^^ . . "^\\d{7}$"^^ . "false"^^ . . "http://sweetontology.net/phenOceanCoastal/$1"^^ . . . "DriedSpecimen"^^ . . . . "ID of a researcher in Authenticus website"^^ . . "nfdi4culture" . . "NBC00001"^^ . "https://scholar.google.com/scholar?cluster=$1"^^ . "sequence" . . "c_n4J1c3"^^ . . . "^[a-zA-Z0-9]+(-[a-zA-Z0-9]+)+$"^^ . . . . "strain" . . . "https://cropontology.org/rdf/CO_339:$1"^^ . "life science" . . . . . "StudyProposal"^^ . _:N27863f07808b4bd79db364c2c5c1818b "custserv@nlm.nih.gov" . "ccon" . . "pii" . . "https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/"^^ . . "false"^^ . . . . "false"^^ . "false"^^ . . "anatomy" . . . . "obo" . "nfdi4chem" . . "wgs84" . "protein interactions" . "SM00015"^^ . "liuzx@sysucc.org.cn" . . "chemical compound" . "4390079"^^ . . "genome" . . "https://w3id.org/evorao/"^^ . "infectious disease medicine" . "ontology" . "gemet" . "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid="^^ . "ChEMBL mechanism" . . . . . "vietherb.species" . "https://panoramaweb.org/$1.url"^^ . "16941567"^^ . . . "genetics" . . "AdiabaticInvariant"^^ . "genome/gene" . "sweet.phatmo" . . . "mental health" . . . "5046"^^ . . . . "rdf" . . . . . . . . . "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"^^ . "http://www.w3.org/2006/vcard/ns#"^^ . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes."^^ . "pre mirna" . "false"^^ . . . . . . . "chemical biology" . . . . "protein interactions" . . "genetic polymorphism" . "contracts" . . . . "^\\d+$"^^ . "Asset"^^ . . "function" . "https://schema.coypu.org/em-dat#"^^ . "swissregulon" . "gene" . "biomedical science" . . "anatomy" . . "CIViC Assertion" . . . . . . . "environment" . "Anita Bandrowski" . "martin.pospisek@natur.cuni.cz" . . . "false"^^ . . . "interaction" . . . . "transcript" . . . . . . "http://www.informatics.jax.org/accession/MGI:"^^ . . "protein" . "https://pneumowiki.med.uni-greifswald.de/$1"^^ . "industry" . . . "AcousticComfort"^^ . "aop.events" . . "flybase" . . . "https://www.metanetx.org/equa_info/"^^ . . . . . "An ontology for modeling global trade alerts, mainly inspired by the Global Trade Alerts repository."^^ . . . "AnnualCycle"^^ . "zhufeng@zju.edu.cn" . . . . "DOME Registry" . _:Nddb7ddea3fa0460daa0f80e1b3fe5dda "sschurer@med.miami.edu" . . . . . . . . "FINDEX Bau as a SKOS Thesaurus - Facetted Indexing System for Civil Engineering" . . . . . . . "multiple sequence alignment" . . "BiGG Compartment" . . "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . "Feng Zhu" . "false"^^ . . "Pierre Cosson" . . . "Simple Modular Architecture Research Tool" . "nfdixcs" . . "^[A-Z]{2,}(\\d{2}|__)[sm]\\d{3}$"^^ . . "suprabank.buffer" . . "taxonomic classification" . . "cell" . . "life science" . "000912"^^ . . . . "sisu" . "false"^^ . . "The BiodivPortal is an OntoPortal instance for biodiversity-related ontologies" . "polypeptide region" . . . . "The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts."^^ . "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms."^^ . . "The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)"^^ . . . . "TogoID" . . "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1"^^ . "christian.hauschke@tib.eu" . . "Underlying schema for POWDER"^^ . . . _:Nf1ef123c9f484bf69dffb2227ecc52bf "Kirk Hess" . . "SWEET Ontology Phenomena Fluid Dynamics" . "fix" . . "https://cordis.europa.eu/project/rcn/$1_en.html"^^ . "Secondary Metabolism Collaboratory - taxon" . . . _:Na007fb91a7b64c5c8347dc9647245316 . "Fission Yeast Experimental Conditions Ontology" . . . . "data identity and mapping" . . "LCCN Permalinks are persistent URLs for bibliographic records in the LC Catalog and authority records in LC Authorities. These links are constructed using the record's LCCN (or Library of Congress Control Number), an identifier assigned by the Library of Congress to bibliographic and authority records. LCCN Permalinks are also available for citation records in the Handbook for Latin American Studies (HLAS). [from homepage]"^^ . . "vibso" . . . . . . . . . . "rna" . . "biological regulation" . . . . . . "obo" . "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$"^^ . "Lifecycle Event Type" . . "3d structure" . . "http://www.gramene.org/db/genes/search_gene?acc="^^ . "https://bbp.epfl.ch/nexus/web/studios/public/$1"^^ . . "bibliography/documents" . . . "data transformation" . . . "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1"^^ . . . "3403"^^ . "markerdb" . "loc.graphicmaterials" . "genetic analysis" . . "Social Behavior in insects"^^ . . "00001"^^ . . . . . . . . . . . "http://sweetontology.net/matrIndustrial/$1"^^ . . . "http://edamontology.org/topic_"^^ . "synapse" . "false"^^ . "http://eugenes.org:7072/.bin/fbidq.html?$1"^^ . "genome/gene" . . "material science" . "Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models."^^ . . . "vario" . "proteins" . "immunoglobulin complex, circulating" . "ontology" . . . . . . "biosamples" . "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u"^^ . . . . . . "Sigma Aldrich" . . . . . . . "small molecule" . . "botany" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic"^^ . . . "gabdank@stanford.edu" . "false"^^ . "pseudogene" . "batchelorc@rsc.org" . . . . "geologic constituent" . . . "sweet.stth" . . . "https://glyconavi.org/hub/?id=$1"^^ . . . "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1"^^ . . "hgnc" . . "Thomas Keane" . . . . . . . . . "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments."^^ . . "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"^^ . . . "silva.taxon" . . . . . . . "https://www.ebi.ac.uk/gxa/genes/"^^ . "rsankar@iitk.ac.in" . . "false"^^ . "DataPLANT Collection" . "biomedical science" . "SWEET Ontology Phenomena Cryosphere" . "Donovan Parks" . . "genetic polymorphism" . . "pathway" . "educational science" . . . "loc" . "https://neurovault.org/images/$1"^^ . "000000024"^^ . . . "false"^^ . . . . "myco.lepra" . "life science" . "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase."^^ . "obo" . "Bill Duncan" . "Cell line collections (Providers)"^^ . "nfdi4ing" . "http://purl.obolibrary.org/obo/RBO_$1"^^ . . . "Audubon Core Variant Controlled Vocabulary" . "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions."^^ . . "false"^^ . . . "125768"^^ . . "https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/$1"^^ . . . "ontology" . . . . . . "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1"^^ . . "http://sweetontology.net/stateFluid/"^^ . . . "Quaternary Structural Proteome Repository" . "http://sweetontology.net/realmHydroBody/"^^ . "http://homosaurus.org/terms/"^^ . . "obo" . . "false"^^ . . . "^[0-9]+$"^^ . . "obo" . "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N"^^ . "https://www.uniprot.org/database/"^^ . "http://purl.obolibrary.org/obo/MmusDv_$1"^^ . . "dpvocab" . . . "http://research.bmh.manchester.ac.uk/informall/allergenic-food/?FoodId="^^ . . . "PRINTS" . . . "https://civicdb.org/links/feature/"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Fraction"^^ . . . . . . . . . . . "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies."^^ . . "false"^^ . "protein" . . . "http://purl.obolibrary.org/obo/GNO_$1"^^ . "ontology" . . . . "genome/gene" . "structure" . "biomedical science" . . . "http://id.loc.gov/vocabulary/subjectSchemes/"^^ . . . . "Wormpep" . "repository" . . . . "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0="^^ . "http://rdfs.org/sioc/swan#$1"^^ . . . "CHEMBL4303805"^^ . "pathogen" . "hinv.transcript" . . . . . "http://eurovoc.europa.eu/"^^ . . "PUNCH4NFDI Collection" . . . . "gepris" . . . . . . "lrmi.eduse" . . "EcoGene" . . . "swan" . . "chemistry" . . "http://purl.obolibrary.org/obo/MICRO_$1"^^ . "https://datanator.info/reaction/"^^ . . "study design" . "dalia" . . . . . "sweet.phatmoc" . . . "false"^^ . "enables"^^ . . . . . . . "^\\d+$"^^ . . "SWEET Ontology Representation Scientific Function" . . . . . . "http://id.loc.gov/vocabulary/resourceTypes/"^^ . . "nhcdr" . . . "false"^^ . . . "isTextual"^^ . . . . "^\\d+$"^^ . "Describes the time dimension of the data collection."^^ . . "oharb@pcbi.upenn.edu" . . . "Kerafast cell lines" . . . "https://vocabularies.cessda.eu/vocabulary/AggregationMethod?lang=en#code_$1"^^ . . "Life cycle stages for Platynereis dumerilii"^^ . "^\\w{14}$"^^ . "false"^^ . . . . . . . . . "life science" . "NIH Human Embryonic Stem Cell Registry" . "^\\d{7}$"^^ . "mpath" . "dblp.publication" . . . . . . "sparcdrs" . "0001"^^ . "ontology" . . . . . "space height" . "https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code="^^ . . "tsrnadisease" . "https://www.webofscience.com/wos/woscc/full-record/WOS:$1"^^ . . "botany" . . . "functional genomics" . . "proteomics" . "NLXORG" . "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc."^^ . . . "nif.std" . . . "health science" . "chromosomal aberration" . "http://id.loc.gov/vocabulary/classSchemes/$1"^^ . . . . "2gc4"^^ . "https://geneontology.org/GO_REF/$1"^^ . "cheminformatics" . . . "cosmic" . . . "false"^^ . . . . . "rcameron@sfu.com" . "HL7 External Code Systems" . "Preservation Schemes" . "000064"^^ . . . . . "sequence motif" . . "^EDI_\\d+$"^^ . . "psi-mi" . . "^\\d+$"^^ . "false"^^ . "https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx"^^ . "neurolex" . "technology readiness" . "The HoloFood Data Portal centralizes access to datasets from the HoloFood project, which explores host microbiota interactions in salmon and chicken production. It links phenotypic data with microbiome samples and derived genomic resources and therefore simplifies data integration, supporting researchers in multiomics and microbiome studies. The identifiers in the samples semantic space represent samples derived from animals in HoloFood trials."^^ . . . "reaction data" . "eggNOG" . . . . "false"^^ . . . . . . . . "ldp" . "biomodels.db" . . "transposon family" . . . . . . . . . . . "false"^^ . . . . . . . . "lcsh.genreforms" . . "true"^^ . "intrinsically disordered proteins" . . "hsa_ribocircSCD_001"^^ . . . . . "http://sweetontology.net/humanDecision/$1"^^ . "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name="^^ . . . "sgd" . . "0000109"^^ . . . . . . . "HEX1"^^ . . . "reagents" . . . "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands."^^ . . . . "false"^^ . . . . . . "statistics on classification schemes" . "PhosphoSite Residue" . . . "IoT-lite Ontology" . . . "digital planning and construction" . . "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1"^^ . . "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.)."^^ . . "Yeast Genome Order Browser" . "^MI\\d{7}$"^^ . . "data science" . . . "13GS"^^ . . "http://addictovocab.org/ADDICTO_"^^ . "UPC04349"^^ . "MeDRA" . . . . "false"^^ . . . . . "http://top-thesaurus.org/trait#"^^ . . . "ontology" . "3d structure" . . . "metadata" . "mobidb" . "localization" . "polypeptide region" . "edgar.wingender@edgar-wingender.de" . . . . "CADAFLAT00006211"^^ . "https://www.rsc.org/Merck-Index/reaction/"^^ . "grassland research" . "https://pharmacome.github.io/conso/$1"^^ . "http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae5.owl#$1"^^ . . . . "protein" . "PubMed ID" . . . . . "un" . . . . . . . . "blast" . . "glycan" . "^\\d{7}$"^^ . . . . "amphibiaweb.species" . . . "http://www.pharmgkb.org/pathway/$1"^^ . "http://uri.neuinfo.org/nif/nifstd/"^^ . "http://sweetontology.net/phenGeolFault/$1"^^ . "Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)\nNote that the website uses a different identifier then the one reported in this semantic space."^^ . "obo" . . "000040"^^ . . . "protein precursor organization" . . "Veterinary Nomenclature" . . . . "PepBank Peptide Database" . . "ontology" . . . "rna" . "false"^^ . "https://www.ncbi.nlm.nih.gov/pubmedhealth/"^^ . . . . . "SWEET Ontology Material Organic Compound" . "KYinno cell lines" . "https://op.europa.eu/en/web/eu-vocabularies/concept/-/resource?uri=http://data.europa.eu/nuts/code/"^^ . "https://www.cbioportal.org/study/summary?id=$1"^^ . "bcp47" . "funding agencies" . "identifier of an author in Dialnet"^^ . _:N40622b12c21745549d635379f29f884d . "https://www.ncbi.nlm.nih.gov/homologene/$1"^^ . "sopropfr" . . . . "^\\d{7}$"^^ . . "phenotype" . . . . "life science" . . "http://sweetontology.net/matrIon/"^^ . . "ji.kang@northeastern.edu" . . "Semantic Mapping Vocabulary" . "Alex Bateman" . . . . . "http://sweetontology.net/reprDataFormat/"^^ . "computer science" . . . . . "afset006116"^^ . "^\\d+$"^^ . . "pathway" . . "https://data.legilux.public.lu/vocabulaires/"^^ . . . . "false"^^ . . "ontology" . . "chemical structure" . . . . . . "chembiosys" . . . "Air"^^ . . . "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."^^ . "http://bioportal.bioontology.org/ontologies/"^^ . . . . "EMD-1001"^^ . . "https://fairsharing.org/$1"^^ . "http://sweetontology.net/propDiffusivity/$1"^^ . "obo" . . . . . . . "ghr" . . . "A project in the nmrXiv"^^ . . . . "fair data spaces" . _:Nfe3372ba42eb4a07920a86c03bd62252 "SPAR Ontologies" . . "soreaaw" . "^CL\\d+$"^^ . . . . "false"^^ . "http://ecmdb.ca/compounds/"^^ . . . . "representation mathematics function" . . . . . "protein structure" . . "Ryan Brinkman" . "https://vocabularies.cessda.eu/vocabulary/TypeOfTranslationMethod?lang=en#code_"^^ . "environmental fate" . . "false"^^ . . . . . . "sasap" . . . . . . "gxa.expt" . "false"^^ . . "https://www.uniprot.org/uniprotkb/"^^ . . "phenotype" . . . . . "alternate"^^ . . . . "nucleic acid sequence" . "medical toxicology" . "http://purl.obolibrary.org/obo/PLANP_$1"^^ . "Medical Dictionary for Regulatory Activities" . "optical microscopy" . "^\\d{7}$"^^ . "ukprns" . "pscdb" . . . . . . . "https://purl.org/sms-ontology#$1"^^ . "property" . . . "false"^^ . "molecular interaction" . _:N41580e24001a4b0c826f658e6b3a0074 . . "http://cerrado.linkeddata.es/ecology/ccon#"^^ . "rna" . "false"^^ . . "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily."^^ . "Ctibor Škuta" . "^DRAMP\\d{5}$"^^ . . "http://ctdbase.org/detail.go?type=chem&acc=$1"^^ . . . . "obo" . "https://purl.dataone.org/odo/ADCAD_$1"^^ . "aging" . . . "health science" . "chromatin loop" . "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception."^^ . . "coypu" . "molecular interaction" . "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1"^^ . . . "P00266"^^ . . . . "software"^^ . "http://autism.mindspec.org/GeneDetail/"^^ . . "https://purl.infoflora.ch/concept/ifloprop/$1"^^ . "https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1"^^ . "http://purl.obolibrary.org/obo/XLMOD_"^^ . . "Molecular Interactions Controlled Vocabulary" . . . . . . . "^\\d+$"^^ . "bhsung@kribb.re.kr" . . "phenomena" . . . . . . . . "00020134"^^ . _:N6b220d57f28d47fbaa7e0d14942dea9e "hajo.rijgersberg@wur.nl" . . "ddi.typeoftranslationmethod" . . "Collection of European paediatric cardiac coding files"^^ . . "mieg@ncbi.nlm.nih.gov" . . . . . . "^HGVST\\d+$"^^ . . . . "Information Artifact Ontology" . "jeffvin.wong@utoronto.ca" . . "TAX" . "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"^^ . . "life science" . "drug" . . "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . . . "http://thesauri.dainst.org/en/concepts/$1"^^ . . . "false"^^ . "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays."^^ . . . "NCATS Drugs" . . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4."^^ . . . "ontology/terminology/nomenclature" . . "genome" . . "http://ecoportal.lifewatch.eu/ontologies/$1" . "tno.interconnect.s2" . . . "frbr" . "^\\w+$"^^ . "Climate"^^ . "https://go.drugbank.com/reactions/$1"^^ . . "obo" . "coss@cnb.csic.es" . . "http://uri.gbv.de/terminology/datacite-contributortype/"^^ . . . . . . . "goa" . . . . . "false"^^ . . . "human" . "AdiabaticCondensationLevel"^^ . . "cellline" . . . . . "https://bioregistry.io/gmd:"^^ . "false"^^ . . . . . . "091005"^^ . . . . . "compound" . . . "^4DN[A-Z]{2}[A-Z0-9]{7}$"^^ . . . . . "obo" . . "rna" . "http://repository.topdownproteomics.org/proteoforms/$1"^^ . "http://purl.obolibrary.org/obo/COVOC_$1"^^ . . "http://www.wikidata.org/entity/"^^ . "ontology" . . . . "O80725"^^ . . . . "Randi Vita" . . "plant phenotypes and traits" . "Kidney and Urinary Pathway Ontology" . . . . . "oban" . . "https://sargon-n5geh.netlify.app/ontology/1.0/object_properties/$1"^^ . . . . . . "false"^^ . . . . . . . . "pathway" . _:N6d9270660ec941fda4d2c371c151b789 . . "iot" . . "^\\d{4}$"^^ . "bartoc" . "calendar" . . "teddy" . "https://www.npatlas.org/explore/compounds/$1"^^ . . "As the variable is one of the most relevant entities to enhance data reuse in the Social Sciences, we provide a framework design to better semantics the variables' relations descriptions. These explicit relations between variables enable comparability and facilitate harmonization across waves. We provide a brief textual identification of the relation type, supported by a controlled vocabulary (CV) and an extended description of the relationship. These relations within variables include but are not limited to different versions, derived formats in new waves, new labels and name wording, and alternative response schema through questionnaires and surveys. For instance, a given variable label is changed from one wave to another, even though its concept remains the same. Their values also are subject to change, such as new cardinalities settings, their categorization, or response scheme and scale measurement. They change based on different conditions, e.g., values are updated by any constraints or modified to comply with the study evolution requirements or a new sociological approach. In the Social Sciences, Economics, and Behaviour Sciences, which investigate, for instance, the social structure of the population, political attitudes of voters and candidates, opinions on family, work, religion, politics and society or competencies of adults, those topics are highly subject to change to fit the empirical reality in a constantly changing world. Thus, we propose widening relations descriptions for Social Sciences variables within datasets beginning from the BasedOnObjectType DDI as a first approach."^^ . "NIH HIV Reagent Program" . . . . . "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae."^^ . . . . "Sample processing and separation techniques" . "Maize Ontology" . "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . . "sequence" . . . . . "Provenance Information for Materials Science Ontology - Data Analysis Lifecycle Module" . . . . . "sweet.propsh" . "nfdi4ing" . "protein" . . "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli."^^ . "false"^^ . "https://onto.tib.eu/destf/cs/$1"^^ . . "true"^^ . "Annotation"^^ . . . . . . . "AgriculturalProductionFacility"^^ . . "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."^^ . . . "https://saref.etsi.org/saref4agri/"^^ . . "Sierra Moxon" . "http://purl.obolibrary.org/obo/ACTAN_"^^ . . . . "Rolf Krahl" . "genetic variation" . . "clinical studies" . . . "false"^^ . . . . . . "http://nava.liacs.nl/cgi-bin/nava.py?id="^^ . "https://biopragmatics.github.io/providers/scomp/$1"^^ . . "^[0-9]+$"^^ . . "life science" . . . . . . "data schema" . . . "^\\d+$"^^ . "Selventa legacy protein family namespace used with the Biological Expression Language"^^ . . . . . . . "Jens Klump" . . . "ontology" . "epidemiology" . "researcher" . . "botany" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Units"^^ . "learning material" . . "BioProject" . . . . . "FAIRsharing" . . . . . . "https://cstr.cn/"^^ . _:Nd0a43519a8684adbbcfa3dd7b8a92e6d "ESIP Semantic Team" . . . . "false"^^ . "state change" . "^\\d+$"^^ . . "CAL0003079"^^ . "gene family" . . . . . "ado" . "scdo" . "multiple sequence alignment" . "https://n2t.net" . . . "life science" . . . . . "ontology" . "false"^^ . . . "signaling" . . "sophgt" . . . "https://gudmap.org/id/"^^ . "^\\d+$"^^ . "REACT" . . "Standards Ontology" . . . "100"^^ . . . "https://www.ebi.ac.uk/arrayexpress/experiments/$1"^^ . . . "false"^^ . . . "history" . "https://w3id.org/skgo/modsci#"^^ . . "http://lincsportal.ccs.miami.edu/datasets/#/view/"^^ . "false"^^ . "false"^^ . . . . . "https://www.drugbank.ca/categories/$1"^^ . . "true"^^ . "ontology" . . . . "who.va" . . "nfdi4ing" . _:Ndc33bf2131bf477ba6cc072415e04761 . "0000069"^^ . "van_slyke@zfin.org" . . . "sopropp" . . "BacDive" . . "zoology" . . . . "modsci" . "https://metacyc.org/META/NEW-IMAGE?object="^^ . . . "false"^^ . . . "http://www.sasbdb.org/data/"^^ . . . . . "life science" . . "takeya.kasukawa@riken.jp" . "Exercise Medicine Ontology" . . "image/movie" . . . . . "DSSTox_Generic_SID" . . "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . . _:Nefe5d7d6881d4dec845881bb7226bf0c . "saref.agri" . "https://www.echa.europa.eu/information-on-chemicals/ec-inventory/-/dislist/details/$1"^^ . . "CTD Disease" . . . "chembiosys.data" . . "^\\w+$"^^ . . . . . . "genome" . . . . . "metabolite" . "obo" . . . "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."^^ . . . "iceberg" . . . "livestock" . "Matteo Lissandrini" . . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Sensor" . "https://www.glycoepitope.jp/epitopes/$1"^^ . . "^\\d+$"^^ . . "https://www.aapc.com/codes/cpt-codes/$1"^^ . . "http://gov.genealogy.net/ontology.owl#"^^ . "Leif Oxburgh" . "The Philippine Health Research Registry (PHRR), managed by the Philippine Council for Health Research and Development, is a tool for good governance to promote transparency and accountability in health research. PHRR is a publicly accessible database on newly approved health researches. It includes clinical trials and non-clinical studies conducted in the Philippines. The registry is compliant with the World Health Organization (WHO) standard for clinical trials registry. [from website]"^^ . . "false"^^ . . . . . "0000127"^^ . . "18125"^^ . . . . . "SWEET Ontology Phenomena Atmosphere Transport" . . . . . "nuclear magnetic resonance spectroscopy" . "http://sweetontology.net/realmAstroHelio/$1"^^ . "0000125"^^ . . . . . . . . . . "G8944"^^ . . "http://agroportal.lirmm.fr/ontologies/$1" . . . . . . . . . "Semantically-Interlinked Online Communities Access Ontology" . . "obo" . . . . . "sophgf" . . . "metascience" . . "gene set" . . "false"^^ . "^[0-9]+$"^^ . "rexo" . "person" . "structure" . . _:N5a8dc1c53dcc48a295290663ce719b4f "af8d@nih.gov" . . "^MAR\\d{5}$"^^ . "ontology" . "PTM-0450"^^ . . "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products."^^ . "16"^^ . "erik.vannimwegen@unibas.ch" . "Big Open Network of Sustainability Assessment Information Ontology" . "plo" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Location"^^ . . "dna" . "eukaryotic" . "sweet.hua" . . . "kcoyle@kcoyle.net" . "metabolomics" . "https://biolink.github.io/biolink-model/$1"^^ . . "false"^^ . . "false"^^ . . "life science" . "Database of one-to-one ortholog information provided by the NCBI as a subset of their Gene resource. Used for users to access ortholog information for over 1000 species of vertebrates and arthropods."^^ . . . "tib.mat" . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families."^^ . . . "Cell Line Ontology" . . . "anzctr" . "ccle.cell" . . . "FAIR Cookbook" . "chemfont" . . . . "^\\d+$"^^ . "https://stemcells.nindsgenetics.org?line=$1"^^ . "ontology" . "co_358" . "flybase" . . . "false"^^ . "biology" . . "RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale."^^ . . "http://sweetontology.net/stateRoleGeographic/"^^ . "chemical structure" . . . "WP732"^^ . "1000560"^^ . "false"^^ . "Ioannis Xenarios" . . . . "life sciences, biology" . . "false"^^ . "Two letter country codes assigned by ISO"^^ . "sweet.repdsg" . "false"^^ . "gene expression" . . "https://vocabularies.cessda.eu/vocabulary/LanguageProficiency?lang=en#code_$1"^^ . . . "phenomena" . "genome-wide association study" . . . . "TemplatedLink"^^ . . . "http://purl.obolibrary.org/obo/ACTAN_$1"^^ . "structural biology" . . . . . . "fdd000613"^^ . "http://sweetontology.net/stateEnergyFlux/"^^ . . . "do" . . "https://www.arabidopsis.org/protein?key=$1"^^ . "SpBase" . . "sorelsc" . . "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code."^^ . . "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid="^^ . . . . "snp500cancer" . . . . . "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . . . . . . . . . . . "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information."^^ . . . "00000443"^^ . . "molmovdb" . "humanities" . "chromosomal element nomenclature" . . . . "electronic health record" . . "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers."^^ . . . . "ontology" . . . . . . . . "Evgeny M Zdobnov" . "https://saref.etsi.org/saref4inma/"^^ . "http://hdl.handle.net/"^^ . "Collembola Anatomy Ontology" . . . "false"^^ . . . . . . "ontology" . . "molecule" . "ucas" . . . . "4"^^ . . "^cpd\\d+$"^^ . "https://cn.dataone.org/cn/v2/resolve/%7B$1%7D"^^ . "epidemiology" . . . "icechem" . . . . "https://ontology.iedb.org/ontology/ONTIE_$1"^^ . "molecular entity" . "PEPhub is a database, web interface, and API for sharing, retrieving, and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP) biological metadata standard to store, edit, and access PEPs in one place."^^ . . . . . . . . "The COnCEPT upper-level Design Ontology (COnDO)."^^ . . . "ontology" . . . "http://archaeology.link/ontology#"^^ . . "https://bugguide.net/node/view/$1"^^ . . "http://sweetontology.net/phenAtmoSky/"^^ . . . "cpc" . "jrc-eurl-ecvam-chemagora"^^ . "go" . . "true"^^ . . . . "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln="^^ . . . "57"^^ . . . . . . . . "^[A-Z_]{3}[0-9]{4,}$"^^ . . . "virology" . . . "false"^^ . . "https://bioregistry.io/dragondb.locus:"^^ . "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp="^^ . . "umls.st" . "^G[0-9]{5}[A-Z]{2}$"^^ . . . "botany" . "false"^^ . . . . . "research" . . . . "Immune Epitope Database Assays" . . . . . . "MultiCellDS Digital snapshot" . "https://cropontology.org/rdf/CO_340:"^^ . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Categorical"^^ . . "development" . . "https://www.plantplus.cn/treehub/tree/$1"^^ . "ICEberg family" . . "http://bacmap.wishartlab.com/organisms/"^^ . . . "docid" . . "https://w3id.org/faircookbook/"^^ . . . . "sequence" . . . "^\\d{3}$"^^ . . "deims.sensor" . "charprot" . "http://sweetontology.net/realmLandCoastal/"^^ . "civic.disease" . "suprabank" . . "materials" . . "^\\d+$"^^ . . "http://sweetontology.net/reprSciProvenance/$1"^^ . . "false"^^ . "ontology" . "ontology" . . . . . . "http://purl.obolibrary.org/obo/RO_"^^ . . . "false"^^ . "pmr" . . "http://www.scopus.com/record/display.url?origin=inward&eid=$1"^^ . "21393"^^ . . . "false"^^ . "life sciences" . . "health/disease" . . . "http://purl.obolibrary.org/obo/PR_$1"^^ . . . "ontology" . . "ontology" . "ontology" . "NP_012345"^^ . . "https://goldbook.iupac.org/terms/view/"^^ . . . . "chemical structure" . . . . . . "prospero" . . . "Kyoto Encyclopedia of Genes and Genomes" . . "chembiosys.institution" . . . "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease"^^ . . "electroencephalography" . . . "http://terminologies.gfbio.org/terms/BOHLMANN/$1"^^ . "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)."^^ . . "phenomena" . . . "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG"^^ . . "wosid" . . "https://www.molgluedb.com/browseDB/"^^ . . "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information."^^ . "https://scicrunch.org/resolver/RRID:$1"^^ . . "protein family" . . . "health/disease" . . "General Multilingual Environmental Thesaurus Theme" . "organism-specific databases" . "false"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Chemical"^^ . . "false"^^ . . . "social and behavioural science" . "https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString=$1"^^ . "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally."^^ . . . . . . "ontology" . . . "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications."^^ . . "^\\d{8}$"^^ . . "bibliography/documents" . . . . "edam" . "false"^^ . . . "^\\d{5}$"^^ . . "hsa-mir-200a"^^ . . . "portal" . "The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can"^^ . . . "Chlamydia"^^ . "molecular interaction" . . . . . . "Pierre Baldi" . "^[A-Z0-9][A-Z0-9-]*$"^^ . . . . . "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?"^^ . "chembiosys" . . "gqzhang@sinh.ac.cn" . "cgnc" . . "false"^^ . "A repository of software packages written in PHP."^^ . "protein" . . "NeuroNames" . . "https://www.genenames.org/cgi-bin/genefamilies/set/$1"^^ . . "endpoint"^^ . . . . "https://onto.tib.eu/destf/cs/"^^ . "iuphar.family" . "sweet.repdm" . . "educational resources" . "false"^^ . "ess" . "false"^^ . . "false"^^ . . . . . "compound" . . . . . "https://w3id.org/sulo/$1"^^ . "^\\d{7}$"^^ . "false"^^ . "false"^^ . . . . . . . "chemical" . "life science" . "rhea" . . "^\\d+$"^^ . . _:N99d549f71e614dccb949dfb40e5059dd "davem@umn.edu" . . . . "M00002"^^ . . "anatomy" . "LOTUS Initiative for Open Natural Products Research" . "prediction and recognition" . "PAp00000009"^^ . . . . . . . "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog."^^ . . "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes."^^ . "dbProbe" . "dcterms" . . "http://sweetontology.net/humanJurisdiction/"^^ . . "ddi" . "Saccharomyces Genome Database" . . "Digital Construction Lifecycle (dicl)" . . . . . . . . . . . . . . "false"^^ . . . "false"^^ . "http://purl.obolibrary.org/obo/MFO_$1"^^ . . "^\\d+$"^^ . "plant anatomy" . . "drug interaction" . . "Amanda Wein" . . "Identifies the type of telephone entered as contact information for an individual or an organization."^^ . . . "state physical" . . "ontology" . "0003003"^^ . . "https://www.ebi.ac.uk/ols4/ontologies/nmrcv/terms?curie=NMR:$1"^^ . "http://igsn.org/"^^ . "DDB_G0267522"^^ . . "worldavatar.compchem" . "epigenomics" . . . . "https://nmrxiv.org/sample/"^^ . . . "expression" . . . . "selventa" . . "open educational resources" . . . . . "^\\d{8}$"^^ . . . . "^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$"^^ . . "Ontology of Biological Attributes" . . "molecular entity" . "https://www.ebi.ac.uk/QuickGO/GProtein?ac="^^ . "cabi" . "http://terminology.lido-schema.org/eventType/$1"^^ . "The International Harmonization of Nomenclature and Diagnostic criteria" . . "http://sweetontology.net/propOrdinal/$1"^^ . "qtl" . . "CLV_MEL_PAP_1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State System"^^ . "result#AFR_10001055"^^ . "https://www.uniprot.org/locations/"^^ . "diagnosis" . . "earth sciences" . "AcousticSensor"^^ . "chemistry databases" . . "dpbo" . "opb" . "subject agnostic" . . "Fernanda Dorea" . . "protein-protein interaction" . . . "ontology" . "drug" . "false"^^ . "plant phenotypes and traits" . . "false"^^ . "https://cropontology.org/rdf/CO_336:"^^ . "A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada."^^ . . "An issue in any public repository on GitHub."^^ . "mutation" . . . . . . "cancer" . . "^\\d+$"^^ . . . . . "https://w3id.org/sstim/exposure#$1"^^ . . "http://cellimagelibrary.org/images/"^^ . . "https://ontome.net/ontology/$1"^^ . . "text mining" . "https://molbic.idrblab.net/data/compound/details/"^^ . "Insect Resistance Ontology" . "oa" . . . "1011.00"^^ . "https://bioregistry.io/registry/"^^ . . . . . . . . "dnasu.vector" . . . "true"^^ . . . "^\\d{7}$"^^ . "domain" . "https://w3id.org/aio/$1"^^ . . "false"^^ . "genome annotation" . . "biology" . . "1915"^^ . "false"^^ . "false"^^ . "PPR103739"^^ . "hubmap.donor" . . . "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways."^^ . . "The ZBW classifications on the ZBW Skosmos portal are structured knowledge organization systems used in economics and related fields, most notably the Standard-Thesaurus Wirtschaft (STW). They also include other classification schemes such as the JEL classification and other subject category systems."^^ . . "An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc."^^ . "iCalendar in RDF" . . _:Na46d6eb74a5f4c06910d7b8c410841db "wbug@ncmir.ucsd.edu" . "1"^^ . "food" . . "false"^^ . "Rice Genome Annotation Project" . . . . "utr" . "allele" . . . . "prima.dal" . "geonames.feature" . "computer science" . "false"^^ . "open educational resources" . "Variation Modelling Collaboration" . "sweet.hutr" . "omics" . "sequence" . "loc.authority" . "fivestars" . "books/el/01/BurkartCMS01"^^ . "mod" . . "vfdb.genus" . "K33QZ1W4-D"^^ . . "lw" . "https://saref.etsi.org/saref4ehaw/"^^ . "phosphorylation" . "single cell rna-seq" . "http://sweetontology.net/realmOcean/$1"^^ . "polypeptide region" . . "EROP-Moscow is a curated oligopeptide (2-50 amino acid residues) sequence database which strives to provide a high level of annotations (such as descriptions of the structure of an oligopeptide, its source and function, post-translational modifications, etc.)."^^ . . . . . . "program"^^ . "false"^^ . . "gmelin" . . . . "G-Rich Sequences Database" . . . . "false"^^ . . . "identifier of an article in Dialnet"^^ . . . . . "false"^^ . "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"^^ . "http://ictv.global/id/MSL40/"^^ . "^.+$"^^ . . . "genetics" . "https://dandiarchive.org/dandiset/"^^ . "https://www.ebi.ac.uk/interpro/entry/sfld/$1"^^ . "knockout" . . . "LRMI Alignment Type Vocabulary" . . . "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . "fly" . "http://w3id.org/openeduhub/vocabs/educationalContext/$1"^^ . . "loc.resourcetype" . . "Smart Applications Reference ontology" . "nasaosdr.hardware" . "https://biopragmatics.github.io/providers/sdis/$1"^^ . . . "^GCA_[0-9]{9}(\\.[0-9]+)?$"^^ . "nfdi4ing" . . . . . . . "FiehnLib001006"^^ . . "SemWeb Vocab Status ontology" . . . "dermatology" . "A condensate-modulating drug"^^ . "nif" . . "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies"^^ . . . "ontology" . . "Rosemary Shrestha" . "organism" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Orographic"^^ . . . . . . "microscopy" . "molecular interaction" . . "Genetics Home Reference" . . "false"^^ . "person" . "Demography"^^ . . . . "napdi" . . . . . "sample annotation" . . . "C12345"^^ . . . . . "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States."^^ . . . "^\\d+$"^^ . . . . "linikujp@gmail.com" . "genome" . "false"^^ . "General Process Ontology" . . "false"^^ . "reactions" . "https://web.expasy.org/abcd/ABCD_"^^ . "https://cthoyt.com/evr/"^^ . . . . "physiology" . . . "ecology" . . "^ACTRN\\d+$"^^ . "http://antibodyregistry.org/AB_"^^ . . "saref" . . . . . "computational biology" . . . "https://mardi4nfdi.de/mathalgodb/0.1#"^^ . . "Supply Chain Operation Reference" . "ImmPort is a scientific data resource funded by the National Institutes of Health (NIH) to preserve and share immunology research and clinical trials data generated by NIH researchers and external organizations. ImmPort uses FAIR principles to maximize reuse of deposited data for advancement of biomedical sciences."^^ . . "^\\d{7}$"^^ . . "http://ecoportal.lifewatch.eu" . "biological regulation" . "0000008"^^ . "compound" . . . "https://www.eionet.europa.eu/gemet/en/concept/"^^ . "project" . "A structured controlled vocabulary for the anatomy of fungi."^^ . "00000000"^^ . . "cp" . "kegg_genomes" . . . . . "gene" . . . "false"^^ . . . . "ess" . _:N26f2aa29206f4097a4961a5b7e47bba3 "brinkley@uw.edu" . "http://purl.obolibrary.org/obo/SBO_"^^ . . "false"^^ . . . . "^\\w+\\d+$"^^ . "https://www.ebi.ac.uk/metagenomics/proteins/$1"^^ . "ontology" . . . "protein interactions" . . . "neuroscience" . . . . . "http://www.opengis.net/def/function/geosparql/"^^ . "http://data.europa.eu/bkc/notation_$1"^^ . . . "The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a thorough framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the information contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of inheritance and modularity. \"Inheritance\" means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. Modularity means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research."^^ . . "Klassifikation für interdisziplinäre Forschungsfelder im Rahmen des Kerndatensatz Forschung"^^ . "A list of values for class levels. Created in the context of the OpenEduHub"^^ . . . . . "ontology" . "phenomena" . "10008"^^ . "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide."^^ . "http://www.fairsharing.org/ontology/domain/DRAO_"^^ . . . . . "13"^^ . . . "The System Package Data Exchange™ (SPDX®) specification is an open standard designed to represent systems containing software components as Software Bill of Materials (SBOMs). Additionally, SPDX supports AI, data, and security references, making it suitable for a wide range of risk management use cases. This _spdx3_ prefix is for SPDX 3.x versions. For earlier versions, use _spdx.term_."^^ . . . . . "christoph.steinbeck@uni-jena.de" . "molecular dynamics" . . "false"^^ . . . . "cdna/est" . . . "fid baudigital" . . "mclarkson@uky.edu" . "molecular microbiology" . "https://omabrowser.org/oma/hog/HOG:"^^ . . . . . . "true"^^ . "sweet.propdr" . "false"^^ . "biomedical science" . . . . . . . . "ssn.system" . . . . "vaccine" . . "SWEET Ontology Human Commerce" . "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome."^^ . "^\\d+$"^^ . . . . "2679240"^^ . "mixs" . "obo" . "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID="^^ . . "^\\d+$"^^ . . "region" . "ontology" . "The Creative Commons Rights Expression Language (ccREL) lets you describe copyright licenses in RDF. For more information on describing licenses in RDF and attaching those descriptions to digital works, see [ccREL](https://wiki.creativecommons.org/CC_REL) in the [Creative Commons wiki](https://wiki.creativecommons.org/)."^^ . . "VEuPathDB ontology" . . . . . . . "PA166156302"^^ . . . "dashr" . . "ontology" . . "qualo" . "https://mmp.sfb.uit.no/databases/marcat/#/records/$1"^^ . . "chembiosys.assay" . . . "zty2009@hit.edu.cn" . . "Software Engineering Ontology Network" . "metabolite" . "Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR)."^^ . "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1"^^ . . "D053716"^^ . "MIBiG (Minimum Information about a Biosynthetic Gene Cluster) is a data repository and associated data standard designed to describe biosynthetic gene clusters involved in the production of specialized metabolites. It also stores data on measured biological activities and links to other resources such as NCBI, NPAtlas, and ChEBI. MIBiG is used as a reference database, knowledgebase, and training dataset for machine learning."^^ . . "false"^^ . "^CONSO\\d{5}$"^^ . . "151022"^^ . "AMDEFA"^^ . . . . . . . . "false"^^ . "http://purl.obolibrary.org/obo/NBO_$1"^^ . . . . . "gene group" . . . . . . . . . "http://www.w3.org/ns/rdfa#"^^ . "0000000"^^ . . "Chromosome Ontology" . . . "proteolysis" . "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)."^^ . . . . . . "protein" . "http://www-bionet.sscc.ru/sitex/index.php?siteid="^^ . . . . . "pathway" . . . . . "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates."^^ . "false"^^ . . "false"^^ . "false"^^ . "85dc6019-9654-4ba0-8338-08c4ffe8fe47"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Elemental Molecule"^^ . _:N5d0bab55bd274ad38d2344a525ce9348 . "sweet.propfr" . . . "annethessen@gmail.com" . . . . "The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics."^^ . . . . "false"^^ . "si" . "0000121"^^ . "The Ecosystem Ontology" . . . . "loc.mfiletype" . . "chemspider" . . "ontology" . "100101"^^ . . . . "Current Procedural Terminology" . . . "repository" . . "anatomy" . _:Nc42a72d142454be18152111ba9935da2 . . . "false"^^ . . "false"^^ . "true"^^ . "molecular interaction" . . "Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality."^^ . . . "pubchem.cell" . . "Diversification criteria of REX research" . . "Application ontology for entities related to insecticide resistance in mosquitos"^^ . "Selventa Families" . . "protein" . . "0020"^^ . "data acquisition" . "ghga" . . . "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters."^^ . "Ugis Sarkans" . "begdb" . "http://purl.obolibrary.org/obo/OMO_$1"^^ . . "lipidmaps" . . . "ICEberg integrative and mobilizable element" . . . . "00000268"^^ . "NCBI Taxonomy" . . "phenotype" . . . . "PR000001"^^ . . "http://sweetontology.net/relaHuman/"^^ . . . . . "lrmi.interact" . "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . "false"^^ . "^\\d+$"^^ . "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . . . . . . . . "false"^^ . . . . . "fideo" . . "http://www.nematodes.org/nembase4/cluster.php?cluster=$1"^^ . . . "nlx.res" . . _:Nbd95111e9dcc412b89db3a13f5139311 "Cynthia.Hake@cms.hhs.gov" . . "false"^^ . "comparative genomics" . "false"^^ . . . . "sopropcou" . . . "prefer" . . "structure" . "false"^^ . . "https://nfdi4chem.de/wp-content/themes/wptheme/assets/img/logo.svg"^^ . "A vocabulary for describing the type of a physical Specimen."^^ . . "genome/gene" . . . "cido" . "knowledge and information systems" . . . "developmental biology" . "http://data.europa.eu/89h/$1"^^ . "mge" . "https://phytochem.nal.usda.gov/phytochem/chemicals/show/"^^ . "botany" . "00001760"^^ . "https://bykdb.lyon.inserm.fr/data/html/annotated/$1.html"^^ . "groom@ccdc.cam.ac.uk" . "Homosaurus" . . . . "Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier."^^ . "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$"^^ . . "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"^^ . "OSR0818"^^ . "ontology" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Water"^^ . . "cog" . "economics" . . "gpmdb" . "bel" . . . "https://saref.etsi.org/saref4envi/$1"^^ . "skos-xl" . "The Solid Terms vocabulary defines terms referenced in Solid specifications."^^ . "neurobiology" . "rgap" . . "false"^^ . . . "http://cor.esipfed.org/ont/earthcube/AUT_"^^ . . . "soreag" . . . . . "enzymatic reaction" . "Research Resource Identifiers" . . "loc.contenttypes" . "dlx" . . "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . "Cephalopod Ontology" . . "ChEBI Integrated Role Ontology" . "ontology" . "disease" . . . . . . . "Type of Note" . . . . . "sweet.strg" . "protein structure" . . . . . . . "http://uri.neuinfo.org/nif/nifstd/nlx_br_$1"^^ . "^C\\d+$"^^ . "John Kunze" . . "A vector, derived from a specific gene, that can be purchased from DNASU"^^ . "0000066"^^ . "imke.tammen@sydney.edu.au" . "Maja Magel" . "energy" . . . . . "dpo" . . "biomedical science" . "https://saref.etsi.org/core/"^^ . . "http://purl.obolibrary.org/obo/OBI_$1"^^ . . . "rna-seq assay" . . . "false"^^ . . "http://sweetontology.net/propFraction/$1"^^ . "ontology" . "https://suprabank.org/molecules/$1"^^ . . "false"^^ . "SIDM01262"^^ . . . . "mirna" . "ontology" . "false"^^ . . . "E13035"^^ . . . "natural science" . . . . "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."^^ . "organ" . . "phenomena" . "building information modeling" . . . . "genome/gene" . "doqcs.pathway" . . . "molecular neuroanatomy resource" . . "phenotype" . "si.prefixes" . "interaction/pathway" . . . "https://www.ncbi.nlm.nih.gov/nucest/"^^ . . . . . . "http://sweetontology.net/realmSoil/$1"^^ . . . "false"^^ . . "ESi007-A"^^ . "International Classification of Diseases, 10th Revision, Clinical Modification" . "sorepdsg" . . "nfdi4chem" . . "molecular biology" . . "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$"^^ . "patent" . "genome" . "glycomics" . "omics" . . "jiezhen@med.umich.edu" . "https://pubchem.ncbi.nlm.nih.gov/substance/"^^ . "Coconut Ontology" . . "nfdi4ing" . "fish" . . . . "sabiork.ec" . . . "https://civicdb.org/links/gene/$1"^^ . . "https://ontome.net/profile/"^^ . "^A\\d+$"^^ . "false"^^ . "VCell Published Models" . "viral sequence" . "0101963"^^ . "digital planning and construction" . "archdb" . . "afo"^^ . . . "computer science" . "medlineplus" . . "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications."^^ . . . . _:N458910af68ba4b41bd44acf5bb3ee72b "COI Catalogue" . . . "metabolite" . "v1"^^ . . "fid baudigital" . "ddi" . . . "Forum on Information Standards in Heritage - Archaeological Objects Thesaurus" . "KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated."^^ . . . . . . "unists" . . . "cpd15380"^^ . . . . "https://knowledge.lonza.com/cell?id=$1"^^ . . . . "biomarkerkb" . . . . "false"^^ . . . . . . . . . . . . "https://i.uestc.edu.cn/AACDB/details.php?id="^^ . . . "The Microbial Typing Ontology" . "kenom.material" . . . . "http://id.loc.gov/vocabulary/millus/"^^ . . . "Pazar Transcription Factor" . . . . . . "SNOMEDCT_US_2023_09_01" . . "loc" . . . . . "false"^^ . "mw.mgp" . "12039302"^^ . . "ontology/terminology/nomenclature" . "snctp" . . . "https://www.webelements.com/$1"^^ . "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."^^ . . "molecular glue" . "gsfa" . "bibliography/documents" . . "Sabrina Toro" . _:N81d0534ad8814e9da46c0ce50caac704 . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Oat Trait Ontology is one of these reference plant ontologies integrated within the Crop Ontology. The Oat Trait Dictionary was commissioned by Oat Global (http://oatglobal.org/) to hold the traits used in the T3/Oat database (http://triticeaetoolbox.org/oat/)."^^ . "space direction" . . . . . "iao.issue" . . . "health/disease" . . "0007404"^^ . . . . . . . . "Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages."^^ . "earthcube.aut" . "Registry" . . . "dna sequence" . "false"^^ . . . "^.+$"^^ . . "https://www.uniprot.org/diseases/"^^ . . "mbaudis@me.com" . "Henriette Harmse" . "earth sciences" . . . "false"^^ . "ws" . . . . "ess" . . . . "genome" . . . "SWEET Ontology Material Rock Igneous" . "https://registry.dome-ml.org/review/"^^ . . . "The Smart Applications REFerence ontology (SAREF) is intended to enable interoperability between solutions from different providers and among various activity sectors in the Internet of Things (IoT), thus contributing to the development of the global digital market."^^ . . . . "^T\\d{3}$"^^ . "taxonomy" . "MIPModDB" . "Alex Skrenchuk" . . . "https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/$1"^^ . . . . . . . "SWEET Ontology Realm Land Coastal" . "pathogen" . "^PASS\\d{5}$"^^ . "obo" . "saref" . . . "dashr" . "curated information" . "http://www.daml.org/2003/01/periodictable/PeriodicTable#"^^ . "life science" . "http://www.genome.jp/dbget-bin/www_bget?cpd:"^^ . . "http://swissregulon.unibas.ch/query/$1"^^ . "^\\d{7}$"^^ . "Drosophila Phenotype Ontology" . . "1948"^^ . . "atmosphere precipitation" . "false"^^ . . . . . . . "nasa/kepler-exoplanet-search-results"^^ . . "morbidity" . . "TopicClassification"^^ . . "http://www.geneontology.org/doc/GO.xrf_abbs:$1"^^ . . . . . "earth sciences" . "https://osdr.nasa.gov/bio/repo/data/subjects/$1"^^ . . "https://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_$1"^^ . . . . "0000049"^^ . "loop" . "false"^^ . "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover."^^ . . "false"^^ . . "^\\d+$"^^ . . . "509015"^^ . "fair" . "95-0166C6"^^ . . . . . "nextdb" . "dna" . "protocols and materials databases" . . . . "resource metadata" . "false"^^ . "Unified Medical Language System Concept Unique Identifier" . . . . . "NASA Open Science Data Repository Experiment" . . . . "false"^^ . . . "false"^^ . "^[A-Za-z0-9]+$"^^ . . . "0000006"^^ . "https://saref.etsi.org/saref4grid/"^^ . . . . "100"^^ . . "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id="^^ . . . "nfdixcs" . . "f.quaglia@ibiom.cnr.it" . . . "0000057"^^ . . "lbctr" . . . . "^Y[A-Z]{2}\\d+[CW]$"^^ . . "^\\d+$"^^ . . "interaction/pathway" . . "ontology" . "wos" . "^[1-9]\\d*$"^^ . . . "hpo" . "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . . "cellular components" . "Symptom Ontology" . "richard@cyganiak.de" . . . . "obo" . . "handle" . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Memory Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Memory Consortium members appropriate for maintaining this collection." . . . . . . . . "gist is a minimalist upper ontology created by Semantic Arts."^^ . . "true"^^ . "spider" . "genome" . . "Abdomen"^^ . "^(MNXM\\d+|BIOMASS|WATER)$"^^ . "cc" . "Human Proteome Map Protein" . "fisheries science" . . . . . . "Quantities, Units, Dimensions, and Types Ontology" . . . . . . . "Pointer"^^ . . . "ontology" . . "http://rdf-vocabulary.ddialliance.org/lifecycle#"^^ . . "https://www.clinicaltrials.gov/study/$1"^^ . . . . . . "mazumder@gwu.edu" . _:N8ede2221abf4493e9a5a77b36257d8d4 "evorao@evora-project.eu" . "https://pmads-db.org/result/?id="^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Particle"^^ . . . "Xuetong Zhao" . . "International repository of Adverse Outcome Pathways."^^ . "https://europepmc.org/article/CBA/"^^ . . . . . "amim"^^ . "OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . . "false"^^ . . "https://www.storedb.org/?"^^ . . . "EC number" . "molecule" . "mental health" . "nextprot" . . "SWEET Ontology Phenomena Atmosphere Fog" . . "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions."^^ . "false"^^ . "NEPOMUK Annotation Ontology Specification" . "egon.willighagen@maastrichtuniversity.nl" . . . "Molecular Process Ontology" . . . "https://lov.linkeddata.es/dataset/lov/vocabs/$1" . . . . . "d.a59037e8"^^ . "http://rs.tdwg.org/dwc/terms/"^^ . "drosophilidae" . "storedb.dataset" . . . . . . "geonames.ontology" . . "Requirements from Interconnect Project -- Extensions to s4ener:Device"^^ . "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur."^^ . . "chemical" . . . "http://sweetontology.net/prop/"^^ . . . "^(\\d+)|(\\w+)$"^^ . . "https://www.ebi.ac.uk/miriam/main/"^^ . "http://purl.obolibrary.org/obo/FBdv_$1"^^ . . "phylogenomic databases" . . . . "FAIR* Reviews Ontology" . "Tiago Lubiana" . "genome" . . . . . "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf"^^ . . . "chemical entity" . "viperdb" . . "sohues" . "Accurate"^^ . . . "immunogenetics" . "genome" . "AtomicNeutralNumberDensity"^^ . . "structure" . . "Smart Connected Supplier Network (SCSN) ORDER ontology" . . "https://biomodels.org/$1"^^ . "mcarthua@mcmaster.ca" . . "The pattern for expanded URIs in the given resource" . "Célia Michotey" . . . . . . . . "NFDI4DataScience Ontology" . "transcriptomics" . "cell" . . "plm" . . "scopus" . . "differential gene expression profiling" . . . . . . "drug target" . . . . . "fluticasone"^^ . . "http://sweetontology.net/reprMathSolution/"^^ . . "ontology" . "false"^^ . . . "educor" . . "false"^^ . . . "GM17027"^^ . "Danielle Welter" . . . "true"^^ . "false"^^ . "https://nmrxiv.org/spectra?compound="^^ . "0C1F-DA6C-4B02"^^ . "Ontology, part of the SI Reference Point, covering measurement units (SI base units and SI units with special names) and prefixes."^^ . . . "obo" . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Yam Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . . . . . "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId="^^ . "omics" . "The Organisation for Economic Co-operation and Development (OECD) Harmonised Templates (OHTs) are standard data formats for reporting information used for the risk assessment of chemicals, mainly studies done on chemicals to determine their properties or effects on human health and the environment, but also for storing data on use and exposure."^^ . . . "nif" . . . . "https://uniresolver.io/#did:"^^ . . . "Ulrike Mäder" . . . "HBB"^^ . . "HGNC Gene Group" . _:N749fb74ae1d1472da2e1229f55f3da8b . "https://www.cabi.org/cabebooks/ebook/$1"^^ . "alen.vodopijevec@cessda.eu" . . "90901"^^ . . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Barley Ontology is one of these reference plant ontologies integrated within the Crop Ontology. Its focus is on traits and variable used in field trials for breeding."^^ . _:Nd423fb73e2034d1ca45d81f71abf9f6b "Animal Diversity Web technical staff" . "somas" . "rpcec" . . "http://sweetontology.net/realmLandFluvial/$1"^^ . "cellxgene" . "Classification scheme for material terms used at the Archaeological Museum Hamburg – City Museum Harburg/Helms Museum (AMH)."^^ . . . . . . . . . . . . . . . "VS-0724-CJ1"^^ . . "https://e-cyanobacterium.org/models/model/"^^ . "nucleotide" . . "robertwest100@gmail.com" . . . "model organisms" . "crossDomain"^^ . . "M77F7JM"^^ . . "ncrna" . . "https://schema.coypu.org/ta#"^^ . . . "false"^^ . . . "^\\d{7}$"^^ . "http://purl.org/biotop/biotop.owl#"^^ . "economics" . . "nfdi4energy" . . "MSMEG_3769"^^ . "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_$1"^^ . . . "BT20_BREAST"^^ . . "G protein-coupled receptor database" . . . "ontology" . . "trade" . "SolidState"^^ . . . "dna" . "afo" . . . . "phipo" . "Degree of Establishment Controlled Vocabulary" . . . . "The Castor Bean Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe data."^^ . . "https://www.devtox.org/nomenclature/ml_manus.php?mno=$1"^^ . . "c"^^ . . "uniprot" . . "computational biology" . "JRC Data Catalogue" . "ulrike.maeder@uni-greifswald.de" . . "funding bodies" . "https://skm.nib.si/search/identifiers/"^^ . . "Silvio Tosatto" . "^\\d+$"^^ . "https://www.ebi.ac.uk/metagenomics/studies/"^^ . "Cathy H. Wu" . . "true"^^ . . "protein binding domain" . . "ontology" . . . . "rna" . . . . . "27106865"^^ . . "Functional annotations of genomes for studying gene regulation, with a primary focus on cis-regulatory elements (CREs) such as promoters and enhancers."^^ . "ontology" . "nxr" . . . "chemical structure image" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Reaction"^^ . "life cycle" . "https://jrct.niph.go.jp/en-latest-detail/$1"^^ . . . "false"^^ . "46977"^^ . . . . "social sciences" . "68513255-fc44-4041-bc4b-4fd2fae7541d"^^ . "The MDL number contains a unique identification number for each reaction and variation. The format is RXXXnnnnnnnn. R indicates a reaction, XXX indicates which database contains the reaction record. The numeric portion, nnnnnnnn, is an 8-digit number. [wikipedia]"^^ . "organism-specific databases" . . . . . "art history" . "Saurav Kumar" . . "heike.goerzig@helmholtz-berlin.de" . . . "German Clinical Trials Register" . . "https://bioregistry.io/cldb:"^^ . "http://standards.iso.org/iso/15926/part14/$1"^^ . . "experimental measurement" . . . . . "true"^^ . "false"^^ . . "spbase" . "229"^^ . . . "^\\d{7}$"^^ . . . "Cell line databases/resources"^^ . "FDB002100"^^ . . "^PM\\d{7}$"^^ . . "ontology" . . . "https://osdr.nasa.gov/bio/repo/data/experiments/$1"^^ . . "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements."^^ . . "ontology" . . . "computer science" . . "false"^^ . . "expression" . . . . . . "Library of Congress Media Types Scheme" . "MolGlueDB" . "phenotype" . . . . . _:N27863f07808b4bd79db364c2c5c1818b "NLM Customer Service" . "dna sequence" . . "http://erop.inbi.ras.ru/result2.php?PepName="^^ . "37af84f2-bfd7-4653-b608-eaff44febba6"^^ . "http://www.bind.ca/Action?identifier=bindid&idsearch=$1"^^ . "https://deims.org/networks/$1"^^ . "ac" . "http://ensembl.org/glossary/ENSGLOSSARY_$1"^^ . "false"^^ . "battinfo" . . "http://purls.helmholtz-metadaten.de/mwo/mwo_$1"^^ . "00000098"^^ . "^RCB\\d+$"^^ . "^\\d+$"^^ . "3771877"^^ . "chemical structure image" . . . . . . . "GR_PROTEIN" . . . "genomics" . . "AtmosphereLayer"^^ . "soreagcont" . . . . . . . . . . "https://www.kaggle.com/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Lightning"^^ . . "^\\d+$"^^ . . . . . . . "catalogs" . . . . "image" . . . . . . . . "Vocabulary Maintenance Standard" . "Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance"^^ . . . "ontology" . "https://fungi.ensembl.org/id/$1"^^ . . . "cycle" . "health/disease" . "^CLPUB\\d+$"^^ . . . . "obo" . . "An ontology demonstrating rich ontology for rubber extrusion."^^ . . "niaid.chemdb" . "nfdi4ing" . . "institution" . . . . . . "environmental science" . "^\\d+$"^^ . . "life sciences, biology" . "saref.wearable" . . . . . . . "http://vitro.mannlib.cornell.edu/ns/vitro/0.7#$1"^^ . . . . "Ablation"^^ . . . "http://purl.obolibrary.org/obo/VBO_$1"^^ . "health science" . . . "Curriculum Course Syllabus Ontology" . . . . . "ontology" . . "protein" . "ontology" . . . . "cancer" . . "statistics" . . . "https://shop.vbc.ac.at/vdrc_store/$1.html"^^ . "COMe" . . "edam.format" . "small molecule" . . "^MGYP\\d{12}$"^^ . . "loc.resource" . "sequencing assay" . . "false"^^ . . "International Molecular Exchange" . "0000106"^^ . "http://rdf-vocabulary.ddialliance.org/lifecycle#$1"^^ . . "^[0-9]+\\.[0-9]+$"^^ . . "behavior" . . "emapa" . . . "aallen@ascl.net" . . . . . "ontology" . . "75"^^ . "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels."^^ . . . "952669496"^^ . . . . "chemical structure" . "false"^^ . . "ppeo" . . . . "Ontology for healthcare metadata - especially metadata found in DICOM files (Digital Imaging and Communications in Medicine, see http://dicom.nema.org/). Author: Michael Brunnbauer, Bonubase GmbH (www.bonubase.com). The author's email address is brunni@netestate.de. See http://purl.org/healthcarevocab/v1help for explanations."^^ . . "molecules" . "NanoParticle Ontology" . . . . "extracellular matrix proteins" . "pathology" . . . "^OENC\\d+$"^^ . . "subject agnostic" . . "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution and breeding company within the project. Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Beet Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . . . . "false"^^ . . . "go.chebi" . "SWEET Ontology Property Space Multidimensional" . . "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"^^ . "rapdb.transcript" . . . . . . . . . "biokc" . . . . "false"^^ . . "bioregistry.collection" . . "Rv1908c"^^ . . . . "scholia.resource" . . . . . . . . . . . "torsten.schwede@unibas.ch" . "umbbd.compound" . "disease" . "LigandBook" . "KCT0008394"^^ . . . . . . "familyName"^^ . . . . . "materials science" . . . "protein" . . . "false"^^ . . "small molecule" . . "nfdi4chem" . . . "GWAS Catalog" . . . . . . . "false"^^ . "evm" . "repository" . . "^HGVM\\d+$"^^ . . . "https://ice.ntp.niehs.nih.gov/api/v1/search?chemid=$1"^^ . . "^\\d{10}$"^^ . "ontology" . "representation mathematics solution" . "false"^^ . "^[A-Za-z][A-Za-z0-9]*$"^^ . "epidemiology" . . "kaysheva1@gmail.com" . . . "lschriml@som.umaryland.edu" . "Gene Ontology Issue Tracker" . . . . "phylogenomic databases" . "SNOMEDCT_US_2026_03_01" . . "IRD Segment Sequence" . . "phenomena" . "Sarah E. Hunt" . "^\\d+$"^^ . . "PharmGKB" . . "https://w3id.org/sssom/"^^ . . . . . . "^P\\w+$"^^ . . . . "mKIAA4200"^^ . . "ontology" . "metadata" . . "UMLS" . "food" . . "^m\\w+$"^^ . "false"^^ . "chemical and environmental engineering" . "ontology" . . . _:N42042392c3844fc98656954f8fcd79cf "admin" . "transcript" . . . "The Structure-Function Linkage Database (SFLD) is a hierarchical classification of enzymes that relates specific sequence-structure features to specific chemical capabilities. It was developed by the Babbitt Laboratory in collaboration with the UCSF Resource for Biocomputing, Visualization, and Informatics. As of April 2019, the database is in static format, and will not be updated. [from https://interpro-documentation.readthedocs.io/en/latest/sfld.html, accessed March 18th, 2026]"^^ . "https://vocabs.leibniz-psychology.org/"^^ . . . "http://purl.obolibrary.org/obo/OBA_"^^ . . . . . "ontology" . "protein" . . . . "aftol.category" . "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies."^^ . . "ecology" . "genome/gene" . . . . "The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines"^^ . . "j.detras@cgiar.org" . "louis@imbb.forth.gr" . . "exif" . . . "panther" . "ontology" . "resource metadata" . . "https://www.ebi.ac.uk/interpro/entry/sfld/"^^ . . . "^\\d+$"^^ . "phenomena" . . . "fish.aoe" . . _:N29321bc93ed44da79ffd26a6549637f2 . "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning."^^ . "Cellosaurus" . "oid" . . . "0000440"^^ . "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact."^^ . . . "false"^^ . . "evidence" . "http://purl.uniprot.org/annotation/$1"^^ . . "https://massbank.jp/MassBank/RecordDisplay?id="^^ . "phenotype" . "Lin Huang" . . . "emap" . "cheminformatics" . "inbio" . "https://www.rsc.org/Merck-Index/reaction/$1"^^ . . . . . "A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis"^^ . "human induced pluripotent stem cell line cell" . "Interaction Network Ontology" . "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"^^ . . "oboinowl" . . . . . . . "The information resource registry is a listing of data sources present in the NCATS Data Translator system. Each information resource has an identifier, a short description, and a URL to more information about that resource."^^ . . . "Image Data Resource" . . "hdr" . . "1010"^^ . "https://w3id.org/iadopt/ont/$1"^^ . "murine" . . . . . _:N3025563aaadb4ebf9572645c35bc93c8 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "https://cropontology.org/rdf/CO_330:"^^ . "002368"^^ . "0000066"^^ . . "glacialland" . "sequence motif" . . . . _:N310bca3efe8040e189eef9dde88e9ffe "Michael Lincoln" . "0000046"^^ . . . . "phenotype" . "^\\d+$"^^ . . "http://purl.obolibrary.org/obo/VSAO_$1"^^ . . . . "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications."^^ . "metabolite" . . "2555646"^^ . . . . . "PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them."^^ . "^\\d{1,5}$"^^ . . . . . "true"^^ . . "false"^^ . . "https://discover.pennsieve.io/package/"^^ . "phenotype" . "Includes a typology of notes."^^ . . "https://viralzone.expasy.org/"^^ . "allergome" . . "dna" . "ontology" . . . . . "interaction" . . . . . . "https://portal.hubmapconsortium.org/browse/donor/"^^ . . . . . "RISM Online is a new service that will publish the bibliographic and authority data from the catalogue of the Répertoire International des Sources Musicales project."^^ . "https://data.chembiosys.de/strains/$1"^^ . "GESAH Graphic Arts Ontology" . . . . "ontology" . . . . . . "^T3D\\d+$"^^ . . . "metadata" . . "sioc" . "https://www.hipsci.org/#/lines/$1"^^ . . "http://sweetontology.net/phenGeolTectonic/$1"^^ . . "sequence" . . . "epos" . "neuroscience" . . . . "P0DP23"^^ . . "1484"^^ . . "http://www.ebi.ac.uk/cmpo/CMPO_$1"^^ . "true"^^ . . "ontology" . "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes."^^ . . . . . . "26957"^^ . . "immunoglobulin complex, circulating" . . "100291"^^ . . "w3" . . "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis."^^ . "https://www.ncbi.nlm.nih.gov/protein/$1"^^ . . "bioRxiv" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics"^^ . "Database of structurally defined protein interfaces" . "MSV000082131"^^ . . . "chemical entity" . . . . "http://sweetontology.net/matrElement/$1"^^ . "Identifiers for space-related data from studies that investigate biological and health responses of terrestrial life to spaceflight"^^ . . "units" . . "datacommons" . . "https://www.ebi.ac.uk/chembl/explore/tissue/"^^ . "^LSM-\\d+$"^^ . . "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$"^^ . . "sophcm" . . . "alternative splicing" . . "time" . "0001417"^^ . . . . "HsapDO:0000004"^^ . . . . "https://ngdc.cncb.ac.cn/gwh/Genome/$1/show"^^ . . "nfdi4ing" . "dsmz" . . . "plant phenotypes and traits" . "http://id.loc.gov/vocabulary/descriptionConventions/"^^ . "false"^^ . . . . "https://pdc.cancer.gov/pdc/study/"^^ . . "PANTHER Pathway" . . "pathway" . "oma.hog" . . "taxonomy" . "genome" . . . . . . "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1"^^ . "false"^^ . "sensory perception of taste" . "educational science" . "drug target" . "Tanay Shah" . "organism" . . "^\\d+$"^^ . . . "The collections section of HuBMAP groups related datasets, samples, and metadata into organized categories. Each collection has a unique identifier that links it to its constituent datasets."^^ . . . . . "^PA\\w+$"^^ . . . . . . "subject agnostic" . . . . . . "PharmGKB Gene" . . "false"^^ . . "birnlex" . . . "http://www-snorna.biotoul.fr/plus.php?id="^^ . "laevis" . . . . . . "nfdi4ing" . . . . . "false"^^ . "International System of Units Reference Point" . "true"^^ . "ontology" . . . . "Hiroyuki Ogata" . . . . "proteomics" . "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_"^^ . "false"^^ . . "identifier for a source/publication venue (journal, conference, etc) in Scopus"^^ . . "centrally registered identifier" . "biomedical science" . "literature curation" . . . "worfdb" . . "Abcam" . . . . "fid baudigital" . . "https://w3id.org/sulo/"^^ . . . "http://iirds.tekom.de/iirds#"^^ . . . "false"^^ . . . . . . . . . . . . . "http://sweetontology.net/humanTransportation/$1"^^ . "https://www.alliancegenome.org/accession/$1"^^ . "tno.interconnect.flexibility" . . "^[\\w-]+$"^^ . . . "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT="^^ . "engineering" . . "http://sweetontology.net/realmAtmoWeather/"^^ . "This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011). Probe annotation was taken from A-GEOD-16699."^^ . . . . . "bioinformatics" . . "http://www.w3.org/ns/prov#"^^ . . "nfdi4ing" . . "engineering" . . "APID Interactomes" . "isExpressedAs"^^ . "concentration" . . . "http://sweetontology.net/propEnergyFlux/"^^ . "betasp"^^ . "false"^^ . . "anatomy" . . . "http://sweetontology.net/reprDataService/$1"^^ . . "economics" . . "protein interactions" . . . . . . . "taxonconcept" . . . . "family and domain databases" . "^\\S+$"^^ . "discipline" . . "Database for Prokaryotic Operons" . "geosparql.rule" . . . "sweet.stss" . "Ivan Herman" . "biopax" . . . . . . "molecular interaction" . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Star"^^ . . "https://goldbook.iupac.org/terms/view/$1"^^ . "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]"^^ . . "biomass" . . . "repository" . . "embryonic stem cell line" . . . . "Donny Winston" . . . . . "ontology" . "cdpd" . . . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene."^^ . "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id="^^ . . "omit" . . . . "life science" . "https://s3.us-east-2.amazonaws.com/lg.cede/"^^ . . "XUO" . "Issaku Yamada" . "37"^^ . "health/disease" . . . "Antibodypedia indexes experimental validation of antibodies and the suppliers from which they can be purchased"^^ . "suprabank.interaction" . "Glottolog" . . . "^A[A-Z]+\\d+$"^^ . "Tribology Ontology for Artificial Intelligence" . . . . "BulkDensity"^^ . "life science" . "^BAMSC\\d+$"^^ . . . "dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and haplotype frequencies of over 90 populations worldwide, as well as clinical datasets on nematopoietic stem cell transplantation, and insulin dependant diabetes mellitus (IDDM), Rheumatoid Arthritis (RA), Narcolepsy and Spondyloarthropathy. All clinical datasets housed at the dbMHC provide access to genotypic and phenotypic data on anonimyzed samples with aggregate query functions, and complete download capability."^^ . "protein" . "reaction data" . . "An issue on the Information Artifact Ontology GitHub issue tracker"^^ . . . . . . "mass spectrometry" . "strain" . . . . . "EUB0000221"^^ . "Vocabulary of Materials Tribology Lab at KIT" . "preclinical studies" . . "dc.terms" . "medicine" . . "http://purl.obolibrary.org/obo/OARCS_"^^ . "The EVORAO Ontology provides a structured and harmonized vocabulary for describing shareable pathogens as characterized biological materials, along with their derived products and associated services, organized into collections. Developed within the EVORA project, it supports consistent metadata annotation across research infrastructures, promoting findability, accessibility, interoperability, and reusability (FAIR). By aligning with relevant standards and ontologies, EVORAO facilitates cross-domain collaboration, integration, and sharing of pathogenic resources and services to enhance pandemic preparedness and response. While initially focused on virology, EVORAO is designed to be extensible and also supports metadata harmonization for other pathogens. [from repository]"^^ . . . . "data retrieval" . "ontology" . . "https://hamap.expasy.org/unirule/$1"^^ . "obo" . "https://identifiers.org" . "^\\d{7}$"^^ . . . . "A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts."^^ . "molecular_function" . "fair data spaces" . . . . . . "https://portal.hubmapconsortium.org/browse/donor/$1"^^ . "protein" . . . . . "^(c|k)\\d{7}$"^^ . "nmrXiv project" . "false"^^ . "Giorgio Ascoli" . . . "method" . "pavel.hobza@uochb.cas.cz" . "0061106995455595"^^ . . . _:N36149f5248b544308f8493703193009e "PhenX Admin" . . . "bmrb.entry" . . "w3" . "A vector graphic for an anatomical entity useful for biological and biomedical informatics applications."^^ . . . . "https://data.chembiosys.de/publications/"^^ . . _:Nc94764990da346228a55114ce960109b "michael.lincoln@va.gov" . "Contains identifiers of cohesin-related chromatin loops from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related chromatin loop. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information."^^ . "biologics" . . . . "http://sweetontology.net/realmLandCoastal/$1"^^ . . . "xenobiotic metabolic process" . "chemical" . "SHACL in SHACL" . "http://purl.org/spar/datacite/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Weather"^^ . "gabi" . "ChEMBL" . . "ddi.typeofnote" . "TAO_RETIRED" . . . . "pharmgkb.disease" . "ligandbook" . "PS" . "false"^^ . "LMPR0102010012"^^ . "Q9UKQ2"^^ . "ontology" . . "Adrien Rougny" . . . . . "http://bactibase.hammamilab.org/$1"^^ . . "Time Ontology in OWL" . . . "Encyclopedia of Life" . . "https://bioregistry.io/ncbiortholog:"^^ . . . . . . "Fächer für die LinSearch-Fachzuordnung"^^ . "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone="^^ . . . . . "ontology" . "genetics" . "false"^^ . . . "A type for entries in the Bioregistry's metaregistry." . . . "csa" . . "obo" . "protein interactions" . . "expression data" . "cellxgene.dataset" . . . . . "http://purl.obolibrary.org/obo/RNAO_"^^ . . "false"^^ . . . . "http://sweetontology.net/stateRoleImpact/$1"^^ . "TaxonomyID" . "Gazetteer" . "http://purl.obolibrary.org/obo/MFO_"^^ . "ViralZone" . "13"^^ . "educational science" . . "cdna/est" . . "^WP\\d{1,5}(\\_r\\d+)?$"^^ . "gene expression" . "GND-Ontologie" . "false"^^ . . "https://purl.dataone.org/odo/ADCAD_"^^ . "phenomena" . . . . . . . . . "Rodent Unidentified Gene-Encoded Large Proteins" . "proteomic databases" . "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:"^^ . "ProtoNet Cluster" . . . . . . "http://purl.obolibrary.org/obo/GENEPIO_$1"^^ . "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid="^^ . "ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for compounds that compete with probes for binding to target proteins."^^ . "merops.family" . . . . "PTN000000026"^^ . . . . . . . "molecular interaction" . . "mdl" . "false"^^ . . "The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world."^^ . . "molecular interaction" . . . "organism" . . "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets."^^ . . . "KEGG Orthology" . "true"^^ . . . . "genotype" . . "false"^^ . . "02dacc42-ea46-48fb-a4df-7a875d801086"^^ . "false"^^ . . "false"^^ . . . . . . . "SWEET Ontology Material Equipment" . "obo" . . . "161671"^^ . . . "life science" . . "https://sciprofiles.com/profile/"^^ . "false"^^ . "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences."^^ . "Dataset"^^ . "http://www.w3.org/2003/11/swrl#$1"^^ . . . . "cdco" . "false"^^ . . "Medical Dictionary for Regulatory Activities Terminology" . "http://sweetontology.net/propCategorical/"^^ . . "HGVST1828"^^ . . . "OBOE Standard" . . . "Zoë May Pendlington" . . "ess" . "cdna/est" . . . . . "https://w3id.org/faircookbook/$1"^^ . "http://purl.obolibrary.org/obo/EMAPA_$1"^^ . "reproduction" . . "assetConcepts"^^ . "LinkedIn personal profile" . "http://www.pharmgkb.org/gene/"^^ . . . "life science" . . . "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1"^^ . "http://vbrc.org/gene_detail.asp?gene_id=$1"^^ . . _:N1a6f5e039a934c48b15131db96045d6f "Julian Seidenberg" . . . . . . "humanities and social science" . . . "https://www.bv-brc.org/view/Genome/"^^ . . . . "pmads" . . . "true"^^ . . . "mjyoder@illinois.edu" . "obo" . . . "true"^^ . "CoyPu Ontology" . "http://www.scancerrna.com/toDetail?id=$1"^^ . "GALENOS Mental Health Ontology" . . . "true"^^ . . _:N010c812f10504bce91b9fa60e6b53a9e "Alexey Melnikov" . _:N860d96e05fc3410d9081593a192d49b9 "Plant Ontology Administrators" . . . . . "http://data.europa.eu/eli/ontology#"^^ . "life science" . . "nbdc01071"^^ . "next generation sequencing" . . . "earlyChildhood"^^ . . . . "bork@embl.de" . "https://cropontology.org/rdf/CO_343:"^^ . . "https://registry.identifiers.org/registry/$1"^^ . . . . . . . "true"^^ . . "true"^^ . . "Occupation"^^ . . . . . . . . "Open Digital Rights Language Ontology" . . "transcript" . "fanta" . . . . . . . "post-translational protein modification" . . . . . . . . . . "earth sciences" . "knowledge and information systems" . . . "http://purl.org/ejp-rd/vocabulary/"^^ . . . . . . . . "nfdi-matwerk" . "090201"^^ . . . "sweet.reahb" . "https://www.ncbi.nlm.nih.gov/biosystems/$1"^^ . "0001000"^^ . "^\\d+$"^^ . . "The Science Data Discovery Ontology (sddo) is being developed to provide a semantic foundation for the discovery of information managed by NASA's Science Mission Directorate. This information spans many scientific disciplines, fields and subfields, including heliophysics, earth science, planetary science, astrophysics, biology, astrobiology, and physical science. [from repository]"^^ . . "Semantically-Interlinked Online Communities Argumentation Ontology" . "http://purl.obolibrary.org/obo/MmusDv_"^^ . "An organization" . "iceberg" . "false"^^ . . "spar" . "sequence" . "https://w3id.org/nmdc/"^^ . . . . "false"^^ . . "The primary goal of this ontology is to standardize the representation of molecular simulation data, processes, and methodologies across disparate simulation platforms, engines (e.g., GROMACS, AMBER, NAMD), and analysis tools, while ensuring these terms are interoperable with existing life sciences ontologies"^^ . . "genome/gene" . "plant-pathogen interaction" . . "publons.publication" . . "traffic engineering" . . . . "genome" . . "y3ax-8bq3-60"^^ . "strain" . . "https://envipath.org/package/"^^ . . "ls-c35719-120"^^ . . "http://purl.obolibrary.org/obo/HABRONATTUS_$1"^^ . . "biomarkerkb" . . . "http://purl.obolibrary.org/obo/REHABO_"^^ . . "phenomics" . . . "false"^^ . . . . . "false"^^ . "Doc-Bias, an ontology to support the documentation of bias in data"^^ . . . . "^KCT\\d+$"^^ . . "http://api.hymao.org/api/ref/$1"^^ . . "https://omia.org/phene/omia:$1"^^ . "digital planning and construction" . . . "life science" . "^AT\\d+$"^^ . . . . "Drosophila development" . . "Human BioMolecular Atlas Program Dataset" . "false"^^ . . "https://www.metabolomicsworkbench.org/databases/proteome/MGP_detail.php?MGP_ID=$1"^^ . "biology" . . "molecular biophysics" . . . "The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species."^^ . . . . . . . . . "life science" . "pida" . "dr.shorthair@pm.me" . . "state role representative" . "MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012"^^ . "gene-disease association" . . . "Mouse adult gross anatomy" . "genome" . . "nucc.taxonomy" . . "viaf" . "The goal of the CODATA Research Data Management Terminology is to gather the key terms needed for a common understanding of the research data management domain. The RDMT was revised by the CODATA RDM Terminology Working Group, shared for public review, and then confirmed and finalised in 2023.\n\nThe RDMT grew out of the CASRAI Research Data Management Glossary, which was intended as a practical reference for individuals and groups concerned with the improvement of research data management (RDM). In 2020, CASRAI requested that CODATA assume responsibility for the curation of this valued resource. \n\nTo that end, the RDM Terminology Working Group uses a lightweight and pragmatic biennial process to review the resource now restructured as the CODATA RDM Terminology and suggest any edits, additions and removals that are required in order to develop and improve this important reference resource."^^ . "anatomy" . "http://www.innatedb.ca/getGeneCard.do?id="^^ . . "http://www.wikidata.org/entity/$1" . . . . . . "http://sweetontology.net/propIndex/"^^ . "iot" . "431472"^^ . . . "nfdi4ing" . "SupraBank Buffer" . "false"^^ . "structure" . . "DataCite Related Identifier Type" . . . . . . . . . . . . "http://sweetontology.net/phenAtmo/$1"^^ . "BRENDA Enzyme" . . . . . . "RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary."^^ . . . . . . . . . . "expression" . . . . . . . . "pcl" . . . . . "https://ega-archive.org/identifiers/$1"^^ . . . "false"^^ . "ProteomicsDB Protein" . . . . . . . . "agriculture" . . . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . . "proteomics" . . . "false"^^ . . . "The LIDO Repository/Location Set Type-Vocabulary is a structured controlled list of terms recommended to use as values for the Repository/Location Set element.\nThe type attribute indicates the kind of repository or location as the current or a former one."^^ . "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"^^ . . "OpenADR ontology" . . . "innatedb" . "https://bioregistry.io/mirex:"^^ . . "Aquiclude"^^ . . "mass spectrometry assay" . "Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells."^^ . "4"^^ . "ddi.typeoftelephone" . "false"^^ . . . "https://w3id.org/inbio#_"^^ . . "adms" . . . . . . . . "SWEET Ontology Property Fraction" . "ess" . "nmr" . . . "http://www.allergome.org/script/dettaglio.php?id_molecule=$1"^^ . "Interconnect S2 and SPINE" . "https://icd.who.int/browse10/2019/en#/"^^ . "https://phinvads.cdc.gov/vads/ViewCodeSystemConcept.action?oid=2.16.840.1.113883.12.227&code="^^ . . "immunology" . . . . . . . . . . "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound="^^ . "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)."^^ . . . "^\\d+$"^^ . "life science" . "Tissue List" . . . . . . "^ENST\\d{11}$"^^ . . . . . . . . "ontology" . "Selventa Complexes" . . . . . . "agrkb"^^ . . "Population and Community Ontology" . . . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse."^^ . "Ecological Trait-data Standard" . "p3db.site" . . . . "^\\d{7}$"^^ . "ontology" . . . . . . "^CP\\d+$"^^ . . "^MMAR\\_\\d+$"^^ . . "taxonomy" . "resource metadata" . "false"^^ . "open educational resources" . "insdc.gcf" . . . "false"^^ . . "transportdb" . . "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . "false"^^ . . . . . . . . "https://portal.hubmapconsortium.org/browse/dataset/$1"^^ . . . . . . "1731"^^ . . _:N8cd4930ac4c14835a30e9f074ba112d5 . . . . "cell biology" . . . . . . "ncbiTaxUID" . . . . . "NMRShiftDB" . . "Academic Event Ontology" . . "Actuator"^^ . "small molecule" . . . "phenotype" . . . . "portal" . "organelle" . . "00030015"^^ . . "http://purl.obolibrary.org/obo/TAHE_$1"^^ . . "false"^^ . . "false"^^ . "^\\d+$"^^ . . . . . . . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"^^ . . . "http://terminology.hl7.org/CodeSystem/v2-$1"^^ . . . . . . . "Library of Congress Cultural Heritage Organizations" . . "true"^^ . . "http://www.w3.org/2006/time#"^^ . . "bibliography" . "col.taiwan" . . "^G2P\\d{5}$"^^ . . . "false"^^ . "This is not part of the W3C SWRL specification. It defines annotation properties and implementation-specific extensions (such as rule metadata, enable/disable flags, authorship, and other editor-related annotations) used by Protégé and SWRLAPI rather than the SWRL language itself."^^ . "ontome.project" . . "bila" . "crispr" . . "mpjensen@buffalo.edu" . . . . "bio.tools" . . "atom" . . "gpml" . . "genome" . . "true"^^ . "SWEET Ontology Human Environmental Standards" . . . "chemical biology" . . . "https://medlineplus.gov/genetics/condition/$1"^^ . . . . . . "identifier for a person, in the Loop database of researcher impact"^^ . "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1"^^ . . . "Capacity"^^ . "^HSALNG\\d{7}$"^^ . "214100"^^ . . . "gramene.gene" . "BeetleBase" . . . "ISA Programme Location Core Vocabulary" . "http://pax-db.org/#!species/$1"^^ . "true"^^ . "OSC1416"^^ . "earth sciences" . . "hescriva@obs-banyuls.fr" . . . . "^[1-9]\\d{0,7}\\-\\d$"^^ . "genetics" . "https://w3id.org/gaidet/$1"^^ . "A collection of ontologies relevant within the [NFDI4Chem project](https://www.nfdi4chem.de/) that is mostly based on the overview paper [Ontologies4Chem: the landscape of ontologies in chemistry](https://doi.org/10.1515/pac-2021-2007).\n\nNFDI4Chem deploys a [custom instance](https://terminology.nfdi4chem.de/ts/) of the Ontology Lookup Service (OLS), called NFDI4Chem Terminology Services (TS), that provides the ontologies in this list. This list contains ontologies that cover various domains of chemistry (e.g. ChEBI, CHMO, and RXNO), those that are dependencies of these chemistry specific ontologies (e.g. BFO, RO, IAO, and OBI) as well as those ontologies, which where indexed in the NFDI4Chem TS for interoperability research purposes (e.g. PROV-O, SOSA, and OBOE)." . . . . . . . . . "false"^^ . "UM-BBD_reactionID" . "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world."^^ . "ess" . . . "miro" . . "International System of Units Prefixes" . "https://www.brenda-enzymes.de/ligand.php?brenda_group_id="^^ . . "discoverx" . . "phosphosite.sitegroup" . . "protein name" . . "http://www.w3.org/2005/Atom/$1"^^ . . . . "https://precision.fda.gov/uniisearch/srs/unii/"^^ . "ICD-11" . "PR" . . . . . . . "dwc" . "https://corpusvitrearum.de/id/$1"^^ . "ontology" . . . . . . "Bibliometric Data Ontology" . . "gene" . . . "GeoShape"^^ . . . "hog" . . . "drug" . . . "false"^^ . . . "36"^^ . "asap" . . "^T[A-Z]\\d{7}$"^^ . "protein" . "ganesh.swaminathan@sanger.ac.uk" . . . "topfind" . . "sweet.propsdir" . "iceberg.element" . "^L\\d+$"^^ . . . . . "false"^^ . . "Metabolites in the Xenobiotics Metabolism Database."^^ . . . "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id="^^ . "ruth.duerr3@gmail.com" . "false"^^ . . "w3" . . "sweet.propdife" . . "protein" . "http://id.loc.gov/vocabulary/carriers/"^^ . . "false"^^ . . . "CLO" . "traffic engineering" . . "OncoMX is a knowledgebase for exploring cancer biomarkers in the context of related cancer and healthy data. This resource is for datasets within OncoMX."^^ . "2673500"^^ . "^\\d{8}$"^^ . . . . . . . . . . . "biomedical science" . . . . . . . . . . . . . . . "neXtProt family" . . . . "dcat" . . "UMKS"^^ . . . . . . "Office of Scientific and Technical Information (OSTI)" . "Integrative database for MicroProteins encoded by Introns" . . "^MCDS_C_[a-zA-Z0-9]{1,10}$"^^ . . . "assay" . . "false"^^ . . . "dragondb.allele" . "prediction and recognition" . . . . _:N5f980cc182914a41bf9b5ebb2a825349 "Sam Tombury" . . . . "^\\d+$"^^ . "http://purl.obolibrary.org/obo/BCGO_"^^ . "Alliance of Genome Resources Knowledge Base" . . . "Scientific Information Retrieval and Exchange Network" . . . "animal physiology" . . "mgnify.analysis" . . . . . . "SWEET Ontology Human" . "The hu.MAP integrates several large scale protein interaction datasets to obtain a comprehensive view of protein complexes."^^ . . "dashr.expression" . . "false"^^ . . "identifier for a researcher in a system for scientific authors, redirects to a Web of Science ID, along with P3829"^^ . . . . "sohut" . . "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium."^^ . . . . . "disease" . "hgnc.genegroup" . "Amphibian gross anatomy" . . . "Signaling Network Open Resource" . "Organization" . "true"^^ . . . . . "embryonic stem cell" . "Web Services Description Language" . "https://www.ncbi.nlm.nih.gov/biosystems/"^^ . . "ChemicalStructure"^^ . "dataplant" . "false"^^ . "false"^^ . "OriDB Schizosaccharomyces" . . . . "http://purl.org/NET/biol/botany#$1"^^ . "Carissa Park" . . . . . _:N1c2db4e208e2452da6db4852d6e9c7f5 "radlex-feedback@lists.rsna.org" . "image/movie" . . . "https://www.ncbi.nlm.nih.gov/medgen/"^^ . . "false"^^ . . . . "life science" . . . "genepio" . . . "environmental fate" . . "http://purl.org/lobid/lv#"^^ . . _:Nad2ebeb5178b49579cc00fcaccb4be4f . "nfdi4cat" . . "gene" . "person" . "rna" . "dataplant" . . "Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors."^^ . . . "false"^^ . "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories."^^ . . . . "literature curation" . "mutant" . . . "ontology" . "ontology" . . "obo" . "climate zone" . . "biominder" . . . . "https://w3id.org/dfgfo/2020/"^^ . . . "dunand@lrsv.ups-tlse.fr" . . . . . . "fid baudigital" . . "cell/organelle" . . "The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)"^^ . "http://purl.obolibrary.org/obo/FOVT_"^^ . "Animal TFDB Family" . . "http://mlcommons.org/croissant/"^^ . . "biomedical science" . . . . "http://purl.obolibrary.org/obo/GSSO_$1"^^ . . . . "0000061"^^ . "http://www.w3.org/ns/oa#$1"^^ . . "nfdi4chem" . "soproptg" . . "environmental science" . . "scor" . "nuclear magnetic resonance spectroscopy" . "Wes Schafer" . . . . "234"^^ . "^[0-9]*$"^^ . . "structure" . . . "cell biology" . "false"^^ . "DAPK1"^^ . . "PA134955224"^^ . . . "http://sweetontology.net/propConductivity/$1"^^ . . "false"^^ . "c0000005"^^ . "oryzabase.reference" . "false"^^ . . . "ligandbox" . "sequence" . "http://uri.neuinfo.org/nif/nifstd/oen_"^^ . "^\\d+$"^^ . "brain regions" . . "http://func.mshri.on.ca/fly/genes/list_functional_scores/"^^ . "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots."^^ . . "https://w3id.org/inbio#_$1"^^ . . . "sbalu@ebi.ac.uk" . "https://cropontology.org/rdf/CO_358:$1"^^ . . . . "Fengcheng Li" . . "Health Procedure Ontology" . . . . . . "https://bioregistry.io/vdrc:"^^ . . "^\\d+$"^^ . _:Nbd95111e9dcc412b89db3a13f5139311 "Cynthia Hake" . "evolution" . . . . . . . "model organisms" . "other subjects" . "transcriptomics" . . "^CFo\\d{9}$"^^ . "pdbe" . "0000047"^^ . . . _:Ne2ec985d7e9d497a85f1cd18be07c9fa . . . . "true"^^ . "Jerven Bolleman" . "damien@gerbi-gmb.de" . "false"^^ . "https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomydetail?id="^^ . "4140"^^ . "The Hydra repository was a digital archive for the University of Hull. It was developed to hold, manage, preserve and provide access to the growing body of digital material generated through the research, teaching and administrative activities of the University."^^ . "Terminology of Anatomy of Human Histology" . . . "parasitology" . "ettensohn@cmu.edu" . "enzyme and pathway databases" . . "false"^^ . "chris@gigasciencejournal.com" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Soil"^^ . . "Adrian Gschwend" . "structural biology" . "^[A-Za-z0-9_]+([A-Za-z0-9_\\.]+[A-Za-z0-9_]+)?@[\\d\\w\\.\\-]+[0-9a-z]+$"^^ . "^\\w+$"^^ . "annotation" . . "7499841"^^ . "subject agnostic" . "IUPHARobj" . . "narcis" . . . . "harkemaj@msu.edu" . "Jiang-hua Liu" . . . "^\\d+$"^^ . "tib.ioc" . "https://www.biorxiv.org/content/10.1101/"^^ . . . "false"^^ . . . . "http://purl.obolibrary.org/obo/PORO_$1"^^ . "https://si-digital-framework.org/quantities/"^^ . "false"^^ . "centrally registered identifier" . "quality" . . . "2450"^^ . "BOLD Systems taxon" . "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$"^^ . . . "Kangho Ji" . "hydrosphere body" . "false"^^ . "engineering" . . . "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . "kim.lp" . . . . . "bindingdb" . . . . "pdbj" . "nucleotide" . . . . "https://suprabank.org/solvents/$1"^^ . . "life science" . . . . "curated information" . . . "foaf" . . . . . . . "jstuelk@gwdg.de" . . "ac" . . . . . . "chemistry" . "ddi.datatype" . "^[SCTAGMNU]\\d+$"^^ . "false"^^ . "ricecyc" . . "biocuration" . . . . . . "Orphanet" . . . . "^SAMEA\\d{8}$"^^ . . . "^[A-Z]{2}[A-Z0-9]{0,3}$"^^ . "^\\d+$"^^ . . "Identifiers.org Registry" . "Europeana Data Model vocabulary" . "0001055"^^ . . . "drsheartdata" . "realm" . . "http://purl.obolibrary.org/obo/ENVO_$1"^^ . "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_"^^ . "sequence" . . . "https://flybase.org/reports/$1"^^ . . "false"^^ . "false"^^ . . . "https://www.ncbi.nlm.nih.gov/protein/"^^ . "KEGG Module" . . "The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science."^^ . "lipid" . . . . "http://purl.obolibrary.org/obo/NCRO_$1"^^ . "GS1 Web Vocabulary" . "false"^^ . "CIViC Feature" . . "lexvo.ontology" . "life science" . "The Bibliographic Ontology" . "ontology" . . . "pesticides" . . . . "life science" . _:Nf7f43ab158c24ea6a3cf0035ffafc04f "David J. McLaughlin" . . . . . "protein interactions" . "Document Components Ontology" . . "s4ehaw" . "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . . "morphology" . . . . . "^[A-Z]+[A-Z-0-9]{2,}$"^^ . "ontology" . . . . . . . "^\\d+$"^^ . . . "dal.alghamdi92@gmail.com" . . "https://www.cellosaurus.org/CVCL_$1"^^ . . . . "Michelle Giglio" . "bibliography/documents" . "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks."^^ . . . . "European Medicines Evaluation Agency" . "go-term enrichment data" . . . . _:Na43d7462946a49f2b80a933ab36c1e8e . . "FlyMine Chromosome Band" . "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools."^^ . "agriculture" . . "phosphopoint.kinase" . "Cannabis Database" . . . "glycoscience" . . . "identifier for chemicals linked to information on occurrence in plants"^^ . . "ontology" . . . . . "phytozome.locus" . "materials science" . . . . . . . "Paul Flicek" . "false"^^ . . . . . "https://chem.nlm.nih.gov/chemidplus/rn/"^^ . . . . . . . "https://lincs.hms.harvard.edu/db/proteins/$1"^^ . . . . "https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL#"^^ . . . . . "hhe@ebi.ac.uk" . . . . . . . . . "obo" . . "earth sciences" . "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis."^^ . . . . "The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics."^^ . . "ChemSpiderID" . . "Human Cell Atlas Ontology" . . . . "https://www.biorxiv.org/content/10.1101/$1"^^ . . "RCSB_PDB" . . . "https://proteinensemble.org/"^^ . . . . "phenotype" . . . . . "data analysis" . . "ensembl.protist" . "2244"^^ . "oryzabase.strain" . "false"^^ . "^\\d{7}$"^^ . . . "representation time day" . . "protein" . . "organization" . . . . "false"^^ . . . . . . . "https://deims.org/"^^ . . . . "https://www.tib.eu/digitrubber#DIGITRUBBER_"^^ . "small molecule" . "0000204"^^ . . . "Encyclopedia of DNA Elements" . . "genome" . . . "index" . . . "^\\w+$"^^ . . "datacite" . . "The flexibility ontology module (ic-flex) is by design tightly integrated with SAREF, SAREF4ENER and the following InterConnect modules: power limit (ic-pwlm), incentive table (ic-inc), S2 (ic-s2), data-point (ic-data) and forecast (ic-fc)\n\nThe main concept of the ic-flex module is the ic-flex:FlexOffer, which allows to represent a flexibility offer (or schedule) as a combination of multiple time-series, data-points and forecasts. (from ontology)"^^ . . "phibase.gene" . . "0000124"^^ . . "https://w3id.org/amv#$1"^^ . "owl" . "https://herv.img.cas.cz/s/$1"^^ . . "false"^^ . "sequence" . . "sopropcha" . . . "genomics" . "http://www.w3.org/2011/content#"^^ . "RawData"^^ . "^\\d+$"^^ . . "AbyssopelagicZone"^^ . "0000095"^^ . . "^\\d+$"^^ . "sorealt" . . . . . . . "sweet.propt" . "development" . "interaction/pathway" . "astronomy and astrophysics" . "foundational ontologies" . . "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety."^^ . "roleo" . "false"^^ . "paolo.romano@hsanmartino.it" . . . "genome/gene" . "0000183"^^ . "ontology" . . "ASKEM Epidemiology Prefixes" . "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."^^ . "ChemPro Target" . . . "The goal of the CGIAR Pearl Millet Ontology is to help improve food security for subsistence smallholder farmers in East and West Africa with productive and nutritious pearl millet food and fodder production technologies."^^ . . . "YeTFasCo" . "henriette007@ebi.ac.uk" . . "http://biohackathon.org/resource/hco#"^^ . . . . . . "false"^^ . "KEGG_DRUG_GROUP" . "genetics" . "688"^^ . "http://www.pharmgkb.org/gene/$1"^^ . . . . . . . "https://w3id.org/oc/meta/"^^ . . . "regulation" . . "Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. [from RRID]"^^ . . "sweet.hues" . . . . . "https://db.idrblab.net/ttd/data/drug/details/"^^ . "open educational resource" . "^\\S+$"^^ . "iedb.epitope" . "Instrument"^^ . "protein" . "Patrice Buche" . . . . . . . . . . "AF"^^ . "life sciences, biology" . "^PR\\d{5}$"^^ . . "^\\d{7}$"^^ . . . . "https://terminology.tib.eu/ts/ontologies/"^^ . "^\\w+$"^^ . . . . "resource metadata" . . "nje5@georgetown.edu" . . . . . . "Identifiers correspond to intron-encoded open reading frames (iORFs) for investigating translatable sORFs within introns."^^ . . "ODAM Data explorer" . . "^C?\\d+$"^^ . . . "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1"^^ . "https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_"^^ . "http://purl.allotrope.org/ontologies/role#AFRL_$1"^^ . . . "gene expression" . . . "lipidomics" . "issaku@noguchi.or.jp" . "EarthEasternBoundaryCurrent"^^ . . . . "PneumoWiki" . . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records."^^ . . . . . "botany" . . "drug interaction" . . "^Os\\d{2}g\\d{7}$"^^ . . "AccessibilityConcept"^^ . . . . "nucleic acid sequence alignment" . "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."^^ . "false"^^ . "nfdi4culture" . . . . "https://deims.org/taxonomy/term/"^^ . . "assay" . "https://w3id.org/evorao/$1"^^ . "^SCV\\d+(\\.\\d+)?$"^^ . . . . . . . . . . "ontology" . . "dataplant" . . . . "drugbankv4.target" . . "false"^^ . . "23159291"^^ . . "https://sumlineknowledgebase.com/?page_id=$1"^^ . . . . "ontology" . . . . "euclinicaltrials" . "alignment" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Fluid"^^ . "false"^^ . "electrical engineering" . "false"^^ . "SRS086444"^^ . "CN970821"^^ . . . . "http://vocab.getty.edu/page/ia/$1"^^ . . "https://scicrunch.org/resolver/RRID:BCBC_"^^ . . . "false"^^ . . "^\\d+$"^^ . . . . "biomedical science" . . "^\\d{7}$"^^ . . "IntellectualContribution"^^ . "mo" . . "Big"^^ . . . "taxonomy" . "http://sweetontology.net/realmOceanFloor/"^^ . "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical."^^ . . . "citation" . . . . "false"^^ . "SWEET Ontology Representation" . . "peco" . "sophb" . . . . "784"^^ . . . "https://impi.omicsbio.info/detail?sorfid=$1"^^ . . "comparative genomics" . . . . . "epidemiology" . "PROSPERO" . "^\\d{7}$"^^ . "false"^^ . . . . "mito" . . . "e001"^^ . "false"^^ . . "PhosphoSite Site Group" . . . "horsetelex" . "http://sweetontology.net/reprMathStatistics/$1"^^ . . . "protein structure" . "false"^^ . "false"^^ . . "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line="^^ . . . "LCSCCPN"^^ . "http://dbpedia.org/resource/"^^ . . "drug" . . . . . "http://purl.obolibrary.org/obo/MAXO_"^^ . "worldavatar.kin" . . "https://spec.edmcouncil.org/fibo/ontology/"^^ . "false"^^ . . "Reactome" . "classification" . . "LogiServ (Logistics Service Ontology) models business activities (such as Transport, Transshipment, Load, Discharge, Storage, Consolidation, Deconsolidation, etc.) and their properties as the basis for specifying logistic services. LogiServ is an extension of LogiCO (Logistics Core Ontology)."^^ . "ontology" . . "identifier of scientific author in www.cienciavitae.pt"^^ . . . "true"^^ . . "false"^^ . . "microbe-host interaction phenotype" . . . . . "25512"^^ . "bnf" . "http://cor.esipfed.org/ont/earthcube/MOLA_"^^ . . "structure" . "true"^^ . "structure" . "homologous" . . "https://nfdixcs.org/fileadmin/PR/NFDIxCS/NFDIxCS_Logo2024_deepblue_crop.png"^^ . . . . "Text+ Collection" . "http://scop.berkeley.edu/sunid=$1"^^ . "https://civicdb.org/links/variant_group/$1"^^ . . . _:N2b1505ad83bd4e83978ef184b91620b0 "Filipi Miranda Soares" . . . . . "https://www.geonames.org/"^^ . . . "true"^^ . . . . . "http://purl.obolibrary.org/obo/ORNASEQ_$1"^^ . . "DBSALT001211"^^ . "identifier of a journal in Dialnet"^^ . . "http://www.noncode.org/NONCODERv3/ncrna.php?ncid="^^ . . "https://biopragmatics.github.io/providers/hog/"^^ . . . . . "false"^^ . "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy."^^ . "true"^^ . . . . . . "peroxibase" . "protein binding domain" . . "Narcis Fernandez-Fuentes" . "pubchem" . . "^\\d+\\.\\d+$"^^ . . . . "genome/gene" . _:N9d7af16fe5364390a6a68b5ab4d15fe2 "jeff.horsburgh@usu.edu" . "data analysis" . . "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1"^^ . "corum" . . "A terminology for the skills necessary to make data FAIR and to keep it FAIR."^^ . . . "General Multilingual Environmental Thesaurus Group" . . "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$"^^ . "registry" . "material science" . "Ax1"^^ . . . "https://www.storedb.org/store_v3/study.jsp?studyId=$1"^^ . "phenomics" . . "phenotype" . "ByteOrder"^^ . "https://www.kyinno.com/?s=$1"^^ . . . . . "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date."^^ . "life science" . "false"^^ . . . . . . "biomedical science" . "^(Gi|Gc)\\d+$"^^ . "ontology" . . . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra."^^ . . . . . "http://synbip.idrblab.net/data/sbp-target-complex/details/"^^ . . "false"^^ . . . "^\\d{7}$"^^ . . . . "cultural heritage" . "^\\d+$"^^ . "false"^^ . "http://www.w3.org/ns/auth/cert#$1"^^ . "phenotype" . . . . "Joshua Orvis" . "education level" . "metatlas" . "mass spectrometry assay" . . . . . "protein" . . . "chemical formula" . . . . . "dbg2introns" . . . . "^\\d{7}$"^^ . . "chemistry" . . "880798137"^^ . "protein" . "^\\d+$"^^ . "^DBSALT\\d{6}$"^^ . . . . . "true"^^ . . . . . "https://schema.coypu.org/gta#$1"^^ . . "planp" . . "health science" . "preclinical studies" . "https://www.w3.org/2022/wot/tm#"^^ . . . . . "Jian Huang" . . . . . . . "educational science" . "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId="^^ . . "https://www.ncbi.nlm.nih.gov/probe/?term=$1"^^ . "http://www.w3.org/ns/ssn/$1"^^ . . "genome" . . . . "https://www.holofooddata.org/animal/"^^ . . "expression data" . "The pattern for identifiers in the given resource" . . "A database for Triticeae and Avena gene symbols."^^ . . "https://id.loc.gov/vocabulary/relators/$1"^^ . "https://vocabularies.cessda.eu/vocabulary/SamplingProcedure?lang=en#code_$1"^^ . . . "ontology" . . "Digital Construction Occupancy" . . . . "A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis."^^ . . . "false"^^ . . "nfdixcs" . "^\\d{6}$"^^ . . . . "Response Unit" . . _:N2fb8a8b6b8e14567b622db85ca1e7989 . . . . . "SPARQL 1.1 Service Description" . . "mammalian" . . . . . "https://chemprosquare.idrblab.net/data/target/details/"^^ . "https://www.surechembl.org/chemical/"^^ . . . "health science" . . "false"^^ . . . "protein" . . . "Aftershock"^^ . . "0000070"^^ . "https://www.iedb.org/mhc/"^^ . "degradome" . "Gene Expression Ontology" . "sequence" . . "https://w3id.org/digitalconstruction/0.5/Energy#"^^ . "binding site" . "http://purl.obolibrary.org/obo/OHPI_"^^ . . "umls" . "http://rdf.webofcode.org/woc/"^^ . . "http://www.pharmgkb.org/disease/"^^ . . "expression" . "http://sweetontology.net/realmLandProtected/"^^ . "life science" . "https://mobidb.org/$1"^^ . "http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm"^^ . . "mouse" . "toxoplasma" . . . . . . "expression data" . . "ans.educationlevel" . . "pdevries@wisc.edu" . . "mass spectrum" . "lido.repositoryset" . . . . "https://easychair.org/cfp/$1"^^ . . . . "AB016785"^^ . . "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id="^^ . "omia.variant" . . "https://www.gwascentral.org/phenotype/"^^ . "false"^^ . "http://purl.obolibrary.org/obo/TAO_"^^ . "uniprot.db" . . "subject agnostic" . "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1"^^ . "bioimaging" . "^UP\\d{9}$"^^ . "subject agnostic" . . . . . . "221058"^^ . "nfdixcs" . . "https://www.npatlas.org/explore/compounds/"^^ . "genetic disorder" . . "70"^^ . "The Lentil Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . "Nikkaji number" . . . "An ontology for glycans based on GlyTouCan, but organized by subsumption."^^ . "qualities" . "https://proteinensemble.org/$1"^^ . . . . "Vocabulary used in the RDF representation of SBML models."^^ . "nfdi4energy" . . . . "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . . "signaling" . . "https://graphics.endlessforms.info/element?id=$1"^^ . . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information."^^ . . . . "fungidb" . . "false"^^ . . "https://lincs.hms.harvard.edu/db/datasets/$1"^^ . "http://www.kegg.jp/entry/$1"^^ . . . "^TF\\w+$"^^ . "A controlled vocabulary to support the study of transcription in the primate brain"^^ . "http://sweetontology.net/phenCycleMaterial/"^^ . "Vertebrate Skeletal Anatomy Ontology" . . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1"^^ . "false"^^ . "subject agnostic" . . . . "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1"^^ . . . . "MRA-253"^^ . "^\\d+$"^^ . . . "^CAL\\d{7}$"^^ . . . "http://rs.tdwg.org/dwcem/"^^ . "MicrosporidiaDB" . "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF)."^^ . . . . . "false"^^ . "http://purl.obolibrary.org/obo/FOODON_"^^ . . "mondo.issue" . . . "^nbdc\\d+$"^^ . . . . . "false"^^ . "sweet.phcr" . "Sebastian Koehler" . . "molecular interaction" . _:N8ede2221abf4493e9a5a77b36257d8d4 "d3fk" . "scientific" . "clinical studies" . . . . . . . . . . . . "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers."^^ . . "http://purl.obolibrary.org/obo/PHIPO_$1"^^ . . . "http://purl.org/dc/dcam/$1"^^ . "biology" . . . "http://www.depod.bioss.uni-freiburg.de/showp.php?gene="^^ . . "Protein Ensemble Database ensemble" . . "false"^^ . "bioregistry" . . . . . . "https://chemprosquare.idrblab.net/data/probe/details/"^^ . . "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database."^^ . "life science" . "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2" . . . . _:N9cd2dbccea9144e8bc22aee917ecf49e . "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . "https://mycobrowser.epfl.ch/genes/"^^ . . "false"^^ . "http://purl.obolibrary.org/obo/HABRONATTUS_"^^ . . . "nuclear magnetic resonance spectroscopy" . "computer science" . . "Contains identifiers of cohesin binding sites in human cells from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information."^^ . . "phenotype" . . "sequence" . "David Mendez Lopez" . . . . . "ontology" . . "John G Tate" . . . . . . . "http://sweetontology.net/propTimeFrequency/$1"^^ . . . "Xenopus Anatomy Ontology" . "sorelh" . . . . . . . . . "faseb list" . "Synthetic Binding Protein" . "vto" . "Elspeth Bruford" . "LIDO Terminology Record Type" . . . . . "genetic" . "forestry" . . . "nlcd" . . . . . . . "https://gxy.io/GTN:$1"^^ . "life science" . . "biology" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Ion"^^ . . . . . . . . . . . . . "false"^^ . "SNOMECT" . . "ddi.commonalitytype" . "URS0000759CF4"^^ . . "fish.event" . "CVCL" . "Yeast Metabolome Database" . "mite" . "European Collection of Authenticated Cell Culture" . "http://purl.obolibrary.org/obo/PCO_"^^ . _:Nff11fb709ac041ac83dabf28d3cb0e9e "hq@hl7.org" . _:N12c055e7c3b8412e8e3a60078972780d "David Fichtmueller" . . "cell line" . . "SEED Subsystem" . "taxonomic classification" . . "Identifiers describing conditions of access to an object (login) as defined by the [OER metadata group](https://oerworldmap.org/resource/urn:uuid:fd06253e-fe67-4910-b923-51db9d27e59f)."^^ . . "codemeta" . "http://sweetontology.net/humanTechReadiness/"^^ . . . "false"^^ . . . "false"^^ . . "https://cropontology.org/rdf/CO_336:$1"^^ . "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records."^^ . "https://e-cyanobacterium.org/bcs/rule/$1"^^ . "ontology" . "academy" . "true"^^ . . . . . . "German decimal classification system based on the Dutch Basic Classification (NBC)"^^ . . . "0000519"^^ . "James Alastair McLaughlin" . . . . . . . . . "Upinder S. Bhalla" . . . "0000086"^^ . . . "Anthromes"^^ . "hydra" . . "genomics" . "life science" . "false"^^ . . . "^\\d{4}$"^^ . . . "ontology" . . . "nucleic acid sequence" . . . . . "fullname"^^ . . "^EUB\\d{7}$"^^ . "bfo11snap" . . "https://w3id.org/ontouml#$1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Fluvial"^^ . . "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information."^^ . _:N0c61f424829b43e7b8486173c667afe0 "Natalie L Catlett" . "627"^^ . . "ontology" . "http://scop.berkeley.edu/sid=$1"^^ . . "WB" . "obo" . "shibase" . "Capacitance"^^ . . . . "https://bmrb.io/data_library/summary/index.php?bmrbId="^^ . . "global health" . . "biomedical science" . . . "protein image" . "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis."^^ . . "false"^^ . "esco.skill" . . . "bioinformatics" . . . . "false"^^ . . . "A vocabulary for e-commerce"^^ . . . . . . "ConductionRole"^^ . . "cob" . "omics" . "Edward A Dennis" . "ontology" . . "Mammalian Feeding Muscle Ontology" . . . "biology" . . "cell culture" . . . "https://www.ebi.ac.uk/gxa/experiments/"^^ . . . "qtl" . . "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1"^^ . . "protein structure" . . "https://w3id.org/bot#$1"^^ . . "sorepsme" . . "rna" . . . . "false"^^ . . . "Woody Plant Ontology" . "ModelDB" . . . . . . . . "nfdi4ing" . "http://purl.obolibrary.org/obo/CDAO_"^^ . . "https://inspire.ec.europa.eu/theme/$1"^^ . "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded"^^ . "Confluence"^^ . _:N01d3d41dc316413d939517e407ffca8a "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . . . . . . "Wei Chen" . . . . . "European Paediatric Cardiac Codes" . "The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation."^^ . . . . "CRISP Thesaurus" . . . "nfdi4ing" . . . . "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids."^^ . . . "gfbio.biol" . "false"^^ . . "^\\d{7}$"^^ . . "false"^^ . "FlyBase" . "^\\d+$"^^ . "^\\d+\\.\\d+$"^^ . . . . . . . . "hybrid" . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE" . "^ARBA\\d+$"^^ . . "genome" . . . "Michelle S Scott" . . . "gene expression" . "Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary" . . . "Diagnostic and Statistical Manual of Mental Disorders (4th Edition)" . . . . . "Identifiers represent antimicrobial peptides in the Database of Antimicrobial Peptides (dbAMP) which is an open-access, manually curated database of antimicrobial peptides (AMPs)."^^ . "AB_262044"^^ . . . . . "https://gov.genealogy.net/item/show/object_"^^ . "geologic orogen" . "Models developed with the Virtual Cell (VCell) software prorgam."^^ . "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN="^^ . "http://purl.obolibrary.org/obo/MFOEM_$1"^^ . "ESCO - International Standard Classification of Occupations" . . . _:Nfe267ce023634d3eba513fe740e002a5 . . "ontology" . . . . . . . "http://foodb.ca/compounds/"^^ . . "false"^^ . . . "IUPHARfam" . . "adult" . "disease course" . "https://bioregistry.io/n2t:"^^ . . "http://purl.obolibrary.org/obo/BCO_"^^ . . . . "http://opm.phar.umich.edu/protein.php?pdbid=$1"^^ . "loc.subjectschemes" . "ontology" . . _:Nfaab21a690d344e19bfbe35f73c7b87e "helpdesk@eionet.europa.eu" . . "Ensembl Gene" . "catalogs" . "enzyme" . . . . . "false"^^ . . . . . "https://cropontology.org/rdf/CO_323:$1"^^ . . . . . . . . . . . "ped" . . "Darwin-SW" . "false"^^ . "false"^^ . "sequence" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Reduction"^^ . . "virology" . "genetics" . "PubChem Element" . . . . "88"^^ . . . "nfdi4cat" . "false"^^ . . "4019477"^^ . "mw.structure" . . "sioc.actions" . "chemdb" . "image/movie" . . "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology."^^ . . "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/"^^ . . "https://cropontology.org/rdf/CO_358:"^^ . . "mutant mouse strain" . . . "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."^^ . . . "false"^^ . "A vocabulary of licenses produced by the Open Source Initiative (OSI)"^^ . . . "bioimaging" . . . . "dimas@raras.org" . "false"^^ . . "Long Term Ecological Research Controlled Vocabulary" . . "false"^^ . "cancer" . . . . "https://biopragmatics.github.io/debio/"^^ . . . "Plant Environment Ontology" . . . . . "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used."^^ . "https://osdr.nasa.gov/bio/repo/data/biospecimens/$1"^^ . "ontology" . "^[a-zA-Z0-9_\\-]+(/.*?)?$"^^ . . . "http://purl.obolibrary.org/obo/SLSO_$1"^^ . . . . "http://purl.obolibrary.org/obo/IMR_$1"^^ . . "^[1-9]\\d*$"^^ . "https://www.omicsdi.org/dataset/massive/$1"^^ . "002678"^^ . "ontology" . "false"^^ . . . . "family and domain databases" . "ymdb" . "http://purl.obolibrary.org/obo/MCO_"^^ . "https://raras.org/property/$1"^^ . . "false"^^ . . "salmon" . . . . "https://smid-db.org/detail/"^^ . . "false"^^ . "bjoern.schembera@mathematik.uni-stuttgart.de" . "florian.thiery@leiza.de" . . . . "pibase" . . "culture" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Model"^^ . "https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:$1"^^ . "00030692-0FE1-4A1B-955E-A2E55D659267"^^ . "http://www.fao.org/gsfaonline/additives/details.html?id="^^ . . . . . . . . "http://viroligo.okstate.edu/main.php?vid=$1"^^ . . "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" . . . "LIDO Terminology Event Type" . "anatomy" . "plant ecology" . "biogrid" . "protein" . . . . . "^[CD]\\d+$"^^ . "sweet.phwn" . . "skosthes" . . . . . . "metascience" . . . . . "https://purls.helmholtz-metadaten.de/prima/experiment#$1"^^ . . . . . . . . "^\\d+$"^^ . . "NIF Standard Ontology: Organisms" . . "Eric W. Deutsch" . . . "false"^^ . . . . . . . "PF3D7_1328700"^^ . "false"^^ . "phenotype" . . . . . . "disease phenotype" . . . "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project."^^ . . . . "true"^^ . "Zenodo" . "Danielle Thierry-Mieg" . "Hector Escriva" . . "osf232097"^^ . "isConceptualizedBy"^^ . . "sweet.maeq" . . "Edgar Wingender" . "gene" . . . "Social Science Research Network Author" . . . "0000194"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Facility"^^ . . "National Center for Advancing Translation Sciences BioPlanet" . "cst" . . . . . "http://www.w3.org/2003/12/exif/ns#$1"^^ . "loinc" . . "linguist" . "Carrine Blank" . . "model organisms" . "aap-1"^^ . "http://purl.org/linked-data/sdmx#$1"^^ . "2023-503698-40-00"^^ . . "gnps.task" . "A website containing information about rare diseases, powered by Wordpress."^^ . . "genetic polymorphism" . . "nfdi4ing" . "^\\d+$"^^ . . . . . . . . "hmdb" . . . "^DRKS\\d+$"^^ . . . "lido.actor" . "http://purl.obolibrary.org/obo/LIPRO_"^^ . "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts."^^ . "false"^^ . . "basic science" . "jrsmith@mcw.edu" . "endlessforms" . "huge" . "ontology" . "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]"^^ . . . "0001655"^^ . "life science" . "false"^^ . "learning resource" . . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions."^^ . . "Higher-level classifications of COG Pathways"^^ . . "https://aopwiki.org/aops/$1"^^ . . . . . . "0000590"^^ . . "nfdi4chem" . . "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID="^^ . . . . . . . . . "pathway" . . "sage.socialsciencethesaurus" . . . . . "A set of guides on implementing various processes within hospitals or healthcare systems."^^ . "http://aber-owl.net" . "Vocabulary"^^ . "life sciences, biology" . . . "obstetrics" . . . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/"^^ . . . "Cambridge Structural Database" . "genomics" . . "identifier for a person, on the LinkedIn website"^^ . . "^\\d+$"^^ . "WGS-95-1333"^^ . "EM-DAT Disaster Classification Ontology" . "https://archive.softwareheritage.org/browse/swh:$1"^^ . "Matt Yoder" . . "A typology of main themes or subjects of data."^^ . "false"^^ . . "false"^^ . "http://sweetontology.net/propTemperatureGradient/$1"^^ . "enzymatic reaction" . . . "transgenic" . "false"^^ . "michall@cc.huji.ac.il" . . . "sorepdm" . . "puro" . "false"^^ . . "false"^^ . . "life sciences, biology" . . "https://mardi4nfdi.de/mathalgodb/0.1#$1"^^ . "https://ssrn.com/abstract="^^ . . . "structure" . "http://purl.obolibrary.org/obo/PW_$1"^^ . . . "The World-2DPAGE database" . . "http://sweetontology.net/stateDataProcessing/$1"^^ . "eukaryota" . . . . . "false"^^ . . . . . . "Selventa Chemicals" . . . . . . "glycosciencesdb" . "disease" . "false"^^ . . . "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data."^^ . . . "nlx.dys" . "false"^^ . . . . "true"^^ . . "ontology" . "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling."^^ . . "ontology" . . "https://w3id.org/bot#"^^ . "Ontology of Physics for Biology" . . "sample annotation" . "http://www.w3.org/ns/org#"^^ . . "^[a-z_A-Z0-9]+$"^^ . . "sequencing assay" . "pathway" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Biology"^^ . . "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1"^^ . "economics" . . "protein" . "149"^^ . . . . "90806"^^ . "https://fungidb.org/fungidb/app/record/gene/"^^ . "Kim Durante" . . "ontology" . . . "saref" . . "UPISO" . "false"^^ . . . "sophfd" . "An ontology of phenotypes covering microbes"^^ . . . "Cancer cell LInes GEne fusions portAl" . "^[A-Z]+[0-9]+(\\.\\d+)?$"^^ . . "antibodypedia.supplier" . "glycomics" . . "http://ecoinformatics.org/oboe/oboe.1.2/oboe-standards.owl"^^ . . "sequence" . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Biodiversity Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Biodiversity Consortium members appropriate for maintaining this collection." . . . "http://purl.obolibrary.org/obo/EMPTY_"^^ . . . . . . . "go-term enrichment data" . "subject agnostic" . "hospital" . . . . . "CellBank Australia" . . . . . . "Animal Genome Cattle QTL" . . . . . "Lyle Burgoon" . "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc."^^ . . . . "anatomy" . "digital planning and construction" . . . . "http://purl.obolibrary.org/obo/TRANS_"^^ . "Dietmar Schomburg" . . . . "https://www.cameo3d.org/sp/targets/target/$1"^^ . . "mirna-mediated post-transcriptional gene silencing" . . . . "Morpheus model repository" . . . "Rosa2"^^ . . "^ITMCTR\\d+$"^^ . . "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^ . "http://sweetontology.net/phenGeolVolcano/"^^ . . "mmmp:biomaps" . . . . "https://prefix.zazuko.com/" . "https://id.loc.gov/resources/$1"^^ . _:N282db9dd0fbe4fe9990c4561023ca77f . . "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work."^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Wave Noise"^^ . "EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology."^^ . . . . "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/"^^ . . . . "false"^^ . "genome/gene" . "http://purl.obolibrary.org/obo/OBI_"^^ . . . . . . . . "Teleost Anatomy Ontology" . . . . "false"^^ . "dataset#RawData"^^ . . . "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs."^^ . . _:N3025563aaadb4ebf9572645c35bc93c8 . "^\\d+$"^^ . . "https://doulix.com/biomodules/"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Transportation"^^ . "cis" . "reaction" . . . . "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id="^^ . . "http://www.w3.org/2007/05/powder-s#"^^ . . "gene" . "H2020-TWINN-2015"^^ . "nucleotide" . "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive."^^ . . . . "botany" . . . . "Dongsheng Cao" . . "sophatmos" . "http://degradome.uniovi.es/cgi-bin/protease/"^^ . "^\\d+$"^^ . "multiple sequence alignment" . "subject agnostic" . "glycopost" . . "MESHA" . . "https://www.wormbase.org/species/c_elegans/rnai/"^^ . . . "false"^^ . "Longitudinal"^^ . "Data Repository of Antimicrobial Peptides" . "dtlit"^^ . "Phy000CLXM_RAT"^^ . . "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity."^^ . "false"^^ . "chickenqtldb" . . . . "x-ray diffraction" . . . . "^[A-Za-z0-9-]+$"^^ . "ontology" . "^\\d{7}$"^^ . . . . "false"^^ . . . "Geomames" . "http://sweetontology.net/humanEnvirConservation/$1"^^ . . . "This list includes terms that describe general categories, or genres that may be applied to various types of information resources. It has been compiled from controlled lists of values in various data elements in the MARC 21 Format for Bibliographic Data."^^ . "sweet.reaas" . . . . "life science" . . . "snp" . . "030719"^^ . "false"^^ . "^\\d+$"^^ . "peteremidford@yahoo.com" . . . "meddra" . "LS-114771"^^ . "expression data" . "disease genetics" . . "function analysis" . . "sequence" . "https://www.picb.ac.cn/limore/cellLines/single?para="^^ . . . . . . "ontology" . "obo" . "false"^^ . "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"^^ . . . "data identity and mapping" . . . "Environment"^^ . . . "0"^^ . . . . "false"^^ . . "fobi" . "ddi.summarystatistictype" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Validation"^^ . . . . "medicine" . . . "life science" . . "false"^^ . "expression" . . "http://www.ubio.org/browser/details.php?namebankID=$1"^^ . "false"^^ . "sosto" . . "false"^^ . . "FuTRES Ontology of Vertebrate Traits" . . . . . . "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . "https://knowledge.lonza.com/cell?id="^^ . . "biology" . "sequence" . . "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . "EPOS-DCAT-AP" . . "false"^^ . "The Bibframe vocabulary consists of RDF classes and properties used for the description of items cataloged principally by libraries, but may also be used to describe items cataloged by museums and archives. Classes include the three core classes - Work, Instance, and Item - in addition to many more classes to support description. Properties describe characteristics of the resource being described as well as relationships among resources. For example: one Work might be a \"translation of\" another Work; an Instance may be an \"instance of\" a particular Bibframe Work. Other properties describe attributes of Works and Instances. For example: the Bibframe property \"subject\" expresses an important attribute of a Work (what the Work is about), and the property \"extent\" (e.g. number of pages) expresses an attribute of an Instance."^^ . . "ontology" . . . . . "tib.tso" . "mathematics" . . . "http://purl.obolibrary.org/obo/IEV_$1"^^ . "false"^^ . . . "developmental biology" . "Behavior"^^ . . "zp" . . . . . . . "rliningt@sfu.ca" . . . "http://sweetontology.net/propSpaceHeight/$1"^^ . "dna" . . . "biospecimen" . . . "digitrubber" . . . . . "developmental biology" . . . . "chemistry" . . "Account"^^ . "https://www.isrctn.com/"^^ . "LIDO Terminology Repository Set Type" . . . . . . . . "biosystems" . "earth sciences" . . . "SWEET Ontology Phenomena Atmosphere Wind" . . . "Project in the Ontology Management Environment"^^ . "http://rdfs.org/sioc/types#$1"^^ . _:N53758a5f8d524f3ba674d46e9d161585 "albertgoldfain@gmail.com" . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene."^^ . . "http://sweetontology.net/relaPhysical/"^^ . . . . . "Literature references in Gramene"^^ . "sequence" . . "obo" . . . . "Genet Asefa Gesese" . . . "0040379"^^ . "false"^^ . . . "https://si-digital-framework.org/SI/units/$1"^^ . . . "https://w3id.org/GHGA/"^^ . . . . "01cd2578_8730_4ac9_a555_9112728ea939"^^ . . . . "decision" . . . . "codes"^^ . . "protein" . . . "doi"^^ . . "http://www.w3.org/2003/11/swrlb#$1"^^ . "false"^^ . "comparative genomics" . "organism" . . "phylome" . . "iedb" . . "David Lynn" . . . . "biomedical science" . . "false"^^ . "Allan Peter Davis" . . "Call for paper topics in EasyChair"^^ . . . . . . . "Multum MediSource Lexicon" . . . . "registry" . . . . . "https://suprabank.org/buffers/$1"^^ . "medicine" . . . "ontology" . . _:N0157ebe4fe954962b0d0c39425731316 "cozzone@ibcp.fr" . . . . . . "epidemiology" . . "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#"^^ . . "loc" . . "prediction and recognition" . . "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea"^^ . . "http://www.w3.org/ns/sparql#"^^ . "^KW-\\d{4}$"^^ . . "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1"^^ . . "organism" . . "sequencing assay" . "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1"^^ . . . "academy" . . . "proteomics" . "https://www.ebi.ac.uk/metagenomics/samples/$1"^^ . . . . . . . . "research" . . "noncodev4.rna" . . "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations."^^ . . . "ddc" . . . . . . "virology" . . "bco" . "structure" . . . . "ontology" . . . . . . "1eec8393-e598-41ed-9d8b-6d5b0db94470"^^ . "ebusiness" . "https://ssbd.riken.jp/database/dataset/"^^ . . . "https://publons.com/publon/$1"^^ . "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources."^^ . "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"^^ . . "http://purl.obolibrary.org/obo/PLANA_"^^ . "22RV1_12_2019"^^ . . . "Bandwidth"^^ . "http://nfdi4earth.de/ontology/$1"^^ . . "protein" . . "false"^^ . . . . "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy."^^ . "facility" . "https://purl.brain-bican.org/ontology/dmbao/DMBA_$1"^^ . . "false"^^ . . "SPCC13B11.01"^^ . . "obo" . "4000027"^^ . "metabolites" . "amh"^^ . "^\\d{7}$"^^ . "n0021"^^ . . . . . "molecular entity" . . . "genomics" . . . . . "digital planning and construction" . . "http://purl.obolibrary.org/obo/WBls_"^^ . "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$"^^ . "units" . . . "true"^^ . . . . "expression data" . . . "Tomohiro Oga" . "sweet.stsy" . . . . . . . "gene" . . "https://www.yeastgenome.org/locus/"^^ . "gov.types" . . "ICTV19990991"^^ . . . . . "Model Card Report Ontology" . . . "Terms for genes, experimental factors, and cell lines used by the [Gemma platform](https://gemma.msl.ubc.ca/home.html) for differential gene expression analysis."^^ . . "Christoph Wohner" . . . . "ontology" . "http://purl.org/pan-science/PaNET/PaNET"^^ . . "earth sciences" . . . "small molecule" . . "http://terminology.lido-schema.org/repositorySet_type/"^^ . . "wuhui@ibcas.ac.cn" . . . . . . "Organizational"^^ . . "agriculture" . "^D\\d+$"^^ . "false"^^ . . . "uniparc" . . . . "http://sweetontology.net/propTimeFrequency/"^^ . . "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'."^^ . "false"^^ . . . "false"^^ . . . . "00000001"^^ . . "saxs" . . "false"^^ . "gene functional annotation" . "false"^^ . "false"^^ . "FR-FCM-ZYGW"^^ . "000254"^^ . . "false"^^ . . . "false"^^ . . "digital planning and construction" . . _:N26f2aa29206f4097a4961a5b7e47bba3 "James F Brinkley" . "nfdi4ing" . "http://data.loterre.fr/ark:/67375/BLH-"^^ . "http://vivoweb.org/ontology/core#"^^ . "http://sugarbind.expasy.org/$1"^^ . . . . . "The \"Codex General Standard for Food Additives\" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."^^ . . . "https://www.disprot.org/idpo/IDPO:"^^ . "https://cellmodelpassports.sanger.ac.uk/passports/$1"^^ . "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets."^^ . . "Will Simpson" . "expression data" . . "1"^^ . . . . "^SKIP\\d+$"^^ . . . . . "phenotype" . . . . "biomedical science" . "spectra" . "false"^^ . . . . . "IntAct provides a freely available, open source database system and analysis tools for protein interaction data."^^ . "wikidata.entity" . . "Ebrahim Nourouzi" . . "sost" . . "gene" . "Health Canada Drug Identification Number" . . . . "data_1664"^^ . . "ontology" . "http://purl.obolibrary.org/obo/OCCO_$1"^^ . "data identity and mapping" . . . "051"^^ . . "medicine" . . . "evolutionary biology" . . "conductivity" . . . . . "false"^^ . . "assesses"^^ . "EISSN"^^ . . . "27267"^^ . . "SEED Compound" . . "iceberg.family" . . . . "orthologous" . . "true"^^ . "BAMSC981"^^ . . . "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession."^^ . "false"^^ . . "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls."^^ . "GPCR Natural Variants database" . . "The initial focus of the GS1 Web Vocabulary is consumer-facing properties for clothing, shoes, food beverage/tobacco and properties common to all products. [from homepage]"^^ . "PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties."^^ . "http://ddinter.scbdd.com/ddinter/interact/"^^ . "oefos" . "false"^^ . "false"^^ . . "repository" . . "https://www.mycobank.org/page/Name%20details%20page/$1"^^ . . "http://bactibase.hammamilab.org/"^^ . . "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1"^^ . . . "genome" . . . . "gitlab" . "method" . . . "http://purl.obolibrary.org/obo/ARO_"^^ . "https://w3id.org/geochem/1.0/analyticalmethod/"^^ . . . . . . . . . "Funding, Research Administration and Projects Ontology" . . . "myco.tuber" . . "The result component of the Allotrope ontology suite"^^ . "ICD9CM" . . "medicinal chemistry" . "Vir-Mir db" . . . . . "false"^^ . . . . . . "^\\d+$"^^ . "glycosylation" . . . . "sweet.phatmowm" . . "true"^^ . . . "https://lipidbank.jp/data/$1.cdx"^^ . "Biological Collections Ontology" . "educational science" . . . . . "obo" . . "Audubon Core uses the terms ac:subtype and ac:subtypeLiteral to refine the type of a media item to a level more specific than the Dublin Core Type Vocabulary, http://purl.org/dc/dcmitype/. This controlled vocabulary provides values for ac:subtype and ac:subtypeLiteral."^^ . "http://www.w3.org/2007/05/powder#$1"^^ . "unichem" . "http://purl.obolibrary.org/obo/HTN_"^^ . "Identifiers for product types (product, price, and company data) based on Wikipedia"^^ . "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record."^^ . "eric.sid@nih.gov" . "http://purl.obolibrary.org/obo/chiro#"^^ . . "apid.interactions" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Front"^^ . . "http://ontology.tno.nl/transport#$1"^^ . . "The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]"^^ . . . "http://uri.neuinfo.org/nif/nifstd/nifext_$1"^^ . . . . . "nif_subcellular" . "true"^^ . "https://lobid.org/gnd/"^^ . . . . . . . "http://ddinter.scbdd.com/ddinter/drug-detail/"^^ . "study design" . "dc.elements" . "A model in the ChemBioSys data platform"^^ . . . . . "judith.blake@jax.org" . "false"^^ . "Chemical Analysis Ontology" . . . "Specifies the type of date."^^ . "nci.drug" . . "Vaccine administered code set" . . "true"^^ . . . . "Homologous Organ Groups" . "false"^^ . . "nfdi4ing" . . . . . . . "disease" . . . . . . . . "biomedical science" . . "cell lines" . "Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries."^^ . . "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union."^^ . . . "PREMIS 3 Ontology" . "structure" . . "Cell Biolabs cell line products" . . . . . . "sweet.stdp" . "Aromatic"^^ . "^ACH-\\d+$"^^ . . . "civil engineering" . "history" . . . . . "A timezone-aware extension of the iCal RDF vocabulary"^^ . . . . . "ontology" . . "http://lincsportal.ccs.miami.edu/datasets/#/view/$1"^^ . "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . "E-cyanobacterium entity" . "0000630"^^ . "environmental science" . "insdc" . . "life cycle stage" . . "false"^^ . . "vietherb.metabolite" . "SNOMEDCT_US_2022_12_31" . . . . . . . "false"^^ . . . . . . . . . "mmusdv" . "obi" . "structural biochemistry" . . . . . . . "Amos.Bairoch@sib.swiss" . . "https://datanator.info/reaction/$1"^^ . "sopropcon" . "mcro" . . . "Resource" . . . "https://molbic.idrblab.net/data/cellline/details/$1"^^ . . . . . "rrrc" . "Pierre.Cosson@unige.ch" . . . . . . . . "sample" . . . . "euid" . . . . . . . . . "GHGA Metadata Schema" . "gmho" . . . . "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)."^^ . "developmental biology" . "adverse reaction" . . . "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases."^^ . "CHEBI" . . "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . . . . . . . "organism-specific databases" . . . . . "idomal" . "https://vocabularies.cessda.eu/vocabulary/AggregationMethod?lang=en#code_"^^ . "^OSD-\\d+$"^^ . "dsw" . . . . . "Metadata4Ing" . . "bioinformatics" . "false"^^ . . . _:N310bca3efe8040e189eef9dde88e9ffe "michael.lincoln@med.va.gov" . "Event Venue Registry" . . . . . . "http://purl.obolibrary.org/obo/FAO_$1"^^ . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry 3D"^^ . . "nlx.func" . . . "genetic variation" . . . . "false"^^ . "life science" . . "chemical structure" . "1122888"^^ . "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions."^^ . . . . . "scop.sunid" . . "http://id.loc.gov/vocabulary/geographicAreas/$1"^^ . . . "^\\d+$"^^ . . "sopho" . "false"^^ . "TIB Terminology Service" . . _:N1797596697a548e4abe7fc7256090c9a "Alsayed Algergawy" . . "^SM\\d{5}$"^^ . . . . "botany" . . . . . . . . "Software Heritage is the universal archive of software source code."^^ . "obo" . . "false"^^ . "Alberto Traverso" . "nif" . . "prints" . . "http://purl.obolibrary.org/obo/AAO_"^^ . . . . "realm" . "1000001"^^ . . . . . "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)."^^ . "sequence" . . "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset."^^ . . . . "botany" . . . . "false"^^ . "molecular interaction" . "ontology" . "^\\d{7}$"^^ . "https://id.loc.gov/vocabulary/relators/"^^ . "ontology" . . . . . "https://bioregistry.io/treebase:"^^ . . . . "http://purl.enanomapper.org/onto/ENM_"^^ . . . "worm" . "dna sequence" . . "iedb.reference" . "fid move" . "true"^^ . "^\\d{6}$"^^ . . . "polypeptide region" . "pwo" . "ontology" . "nomen" . "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome."^^ . "http://www.w3.org/2000/01/rdf-schema#$1"^^ . "Detachment"^^ . . . "http://purl.obolibrary.org/obo/EHDAA2_"^^ . "false"^^ . . . . "ontology" . . "life science" . "008893080"^^ . . "homologene" . . . "Solid Terms" . "RiceNetDB Protein" . . . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid="^^ . "ieee.author" . "https://bioregistry.io/lgic:"^^ . "dna" . . . . . . "http://terminologies.gfbio.org/terms/IHO/$1"^^ . "clone library" . . . . "Carnegie Stage" . "health/disease" . . . . . . . . . "Joao Pedro de Magalhaes" . "ontology" . "omon" . . "plant breeding" . . "microscopy" . . "SubstrateDB" . . "^\\d{5}$"^^ . . . . "https://rapdb.dna.naro.go.jp/transcript/?name="^^ . "^IRCT\\d+N\\d+$"^^ . "wot.security" . . "https://github.com/biolink/biolink-model" . . . . . . "acmccs"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Plant"^^ . . . . "environmental science" . . . . "fossilworks" . "haiiu@dtu.dk" . "http://purl.enanomapper.org/onto/ENM_$1"^^ . "^\\w+(\\.\\d+)?$"^^ . . "estdab" . "insdc" . . . . "hinv.locus" . "http://purl.uniprot.org/uniprot/"^^ . "European Science Vocabulary (EuroSciVoc) is the taxonomy of fields of science based on OECD's 2015 Frascati Manual taxonomy. It was extended with fields of science categories extracted from CORDIS content through a semi-automatic process developed with Natural Language Processing (NLP) techniques. (from homepage)"^^ . . . . . "omics" . . "engineering" . . . . . . . . . . "http://purl.obolibrary.org/obo/GALLONT_"^^ . "http://www.pathguide.org/fullrecord.php?DBID=$1" . _:N33ac6ad51f2e4c8ebb5299f551957b06 "Heinrich Herre" . . . "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1"^^ . "Consolidation"^^ . "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." . "systems pharmacology" . "NCI" . . . . . "19333"^^ . . . . "ADH1"^^ . . "false"^^ . . "http://purl.obolibrary.org/obo/MOBIO_"^^ . . . . "signaling" . . "repository" . . "repository" . . . . . . "swiss-model" . . . . "Metabolic Atlas Reaction" . "smtifahim@gmail.com" . . . "false"^^ . "bioinformatics" . . "protein targeting" . "^PKDB[0-9]{5}$"^^ . . . "XframeworkID (XFID) is an open registry of permanent, content-based identifiers for extra-financial disclosure documents associated with labelled bond issuances — green, social and sustainability bond frameworks, Second Party Opinions (SPOs), EU Green Bond Standard pre/post-issuance reviews and\nfactsheets, impact and allocation reports, certifications, assurance reports, and academic research analysing labelled bonds. XFIDs are derived from a SHA-256 hash of the document's canonical content, so an identifier permanently and verifiably denotes one specific document version regardless of where\n the file is hosted — addressing the measured erosion of this disclosure class (23% of tracked documents are no longer accessible at their original URLs). The registry cross-references documents to issuers, bond ISINs, assessment providers and analysts, and is used for citation in academic research, investor due diligence and regulatory monitoring."^^ . "chemical" . "TRD00001"^^ . . . "virus" . "chemical" . "http://purl.org/heritagedata/schemes/eh_tmc/concepts/"^^ . "https://nmrxiv.org/sample/$1"^^ . . "CategoricalProperty"^^ . "FAIRsharing User" . "Antibiotic Resistance Genes Database" . . "wot.hypermedia" . . "BioSample" . "CTX" . . "http://scop.berkeley.edu/sccs=$1"^^ . . . "http://www.w3.org/2003/01/geo/wgs84_pos#"^^ . "mathematics" . . . . . . "ontology" . "upper-level ontology" . . "patent" . "genomics" . "cell_biolabs" . . . "Southwestern Environmental Information Network" . "gene" . . "false"^^ . . "false"^^ . . "http://ontology.tno.nl/logiserv#$1"^^ . "sequencing assay" . . "1242"^^ . "https://eds.gene.le.ac.uk/home.php?select_db=$1"^^ . . . "https://images.endlessforms.info/image/$1"^^ . . . . . "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1"^^ . . . . . . . "proteome" . "UCR00226"^^ . . . "^([0-9A-F]{4}-){2}[0-9A-F]{4}$"^^ . . . "rdf" . . . . "Citation Counting and Context Characterisation Ontology" . "development" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Pressure"^^ . . . "false"^^ . "data analysis" . . . "MycoBank" . . "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD"^^ . . . "https://gdo.endlessforms.info/view/classes?uuid=GDO_"^^ . . . . . . . . "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist="^^ . . . "false"^^ . . "false"^^ . . "This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language."^^ . . "genome" . "biochemistry" . . "synthetic genetic array" . . . . . "Animal Trait Ontology for Livestock" . . . . . "ydpm" . "23"^^ . "classification" . . "http://uri.gbv.de/terminology/datacite-nametype/$1"^^ . "Pocketome" . . "Asteroseismology"^^ . . . . "ecotoxicity" . "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1"^^ . . _:N1a6f5e039a934c48b15131db96045d6f . "lincs.skosmos" . . "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . "http://purl.obolibrary.org/obo/XPO_"^^ . . . . "3d structure" . " Philip Strömert" . "This is a specialist botanical variant of the Biological Taxonomy Vocabulary."^^ . "skosmos" . "false"^^ . . . "https://www.uniprot.org/uniref/"^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State"^^ . . . "ontology" . "ontology" . . "datacite.identifier" . "digital curation" . . . "cordis" . . . "glasner@svm.vetmed.wisc.edu" . "Asteraceae Genome Database - Plant" . . . "Agent"^^ . . . "biology" . . . "belongsToTimeSeries"^^ . . "proteomics" . . . "https://www.gleif.org/lei/"^^ . "false"^^ . . "https://www.ebi.ac.uk/ega/studies/"^^ . "genome/gene" . "Thorsten Henrich" . . "soprocsc" . "Sonia Balyan" . "ontology/terminology/nomenclature" . "false"^^ . . "ardb" . . "traits" . "preclinical studies" . "VehicleProperty"^^ . . . . "ontology" . "genome" . . . . . "The Annotation Ontology specification is currently used as input for the activities of the http://www.w3.org/community/openannotation/'>W3C Open Annotation Community Group that works towards a common, RDF-based, specification for annotating digital resources. The Group effort starts by working towards a reconciliation of two proposals that have emerged over the past two years: the http://code.google.com/p/annotation-ontology/'>Annotation Ontology and the http://www.openannotation.org/spec/beta/'>Open Annotation Model. Initially, editors of these proposals will closely collaborate to devise a common draft specification that addresses requirements and use cases that were identified in the course of their respective efforts. The goal is to make this draft available for public feedback and experimentation in the second quarter of 2012. The final deliverable of the Open Annotation Community Group will be a specification, published under an appropriate open license, that is informed by the existing proposals, the common draft specification, and the community feedback. [from homepage]"^^ . . "false"^^ . . . "loc" . . . . "nfdi4chem" . . "^(application|audio|font|haptics|image|message|model|multipart|text|video)(/.*)?$"^^ . . . "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1"^^ . "http://sweetontology.net/realmOcean/"^^ . "pharmacology" . "cdna/est" . "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1"^^ . . . . "0000022"^^ . . . . . "health/disease" . . "http://sweetontology.net/matrMicrobiota/$1"^^ . "http://bimerr.iot.linkeddata.es/def/building#$1"^^ . . . . . . . "structure" . . . "https://vocabularies.cessda.eu/vocabulary/NumericType?lang=en#code_$1"^^ . "mutation" . . "CONSO00010"^^ . "^[1-9]\\d{0,6}$"^^ . "compound" . . . "joanap@ebi.ac.uk" . . . "open educational resources" . "community care" . "digital humanities" . "GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform."^^ . . "CNP0171505"^^ . "cran" . . . . "gene expression" . . "E00002"^^ . . . . . . . . "^\\d{7}$"^^ . . "false"^^ . "false"^^ . . "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."^^ . . "^\\d+$"^^ . . "academy" . "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form."^^ . "false"^^ . "https://gnomad.broadinstitute.org/variant/$1"^^ . . . . . "false"^^ . "ACHN"^^ . "false"^^ . . . . . "cath.superfamily" . "ontology" . . "http://sweetontology.net/propSpaceDistance/"^^ . "collagenmutdb" . . . . . . . "false"^^ . "modeldb" . . "^([a-zA-Z]+-)?\\d+(\\.\\d)?$"^^ . . . . "noaa" . . . "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . "getty.tgn" . . . "genetics" . . . "https://www.cathdb.info/version/latest/funfam/"^^ . . "obo" . "http://zbw.eu/stw/thsys/$1"^^ . . "GABI" . . . . . . . . . . "^\\d+$"^^ . . . "http://www.phosphosite.org/proteinAction.do?id=$1"^^ . . . "gene" . . "sweet.repmg" . . . "cancer" . . "elisa-kits" . "http://vocab.getty.edu/ontology#"^^ . "false"^^ . . "dsm5" . . . "Dutch Research Council File Number" . "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name="^^ . "https://www.ncbi.nlm.nih.gov/cdd?term="^^ . . . "http://xmlns.com/wot/0.1/"^^ . . "impi" . . . . "GrainGenes reference" . . "https://vietherb.com.vn/species/$1"^^ . . . . . . . . . "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines."^^ . "reaction data" . "Echinobase" . . . "false"^^ . "psskb" . "organic molecular chemistry" . "irgsp" . . . . . "cazy" . . . . "^ACYPI\\d{6}(-RA)?$"^^ . . . . "http://www.ecogene.org/gene/"^^ . "bioinformatics" . . . "false"^^ . "ATL98012"^^ . . . . "IUPAC Gold Book Compendium of Chemical Terminology" . "true"^^ . . . "uminctr" . "http://www.kegg.jp/entry/$1"^^ . . . "neuron" . . . "https://pubchem.ncbi.nlm.nih.gov/element/"^^ . . . . "phenotype" . . "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id="^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Biological"^^ . . . . . . . "ulrike.wittig@h-its.org" . . "ontology" . . "obo" . . . . "authoredBy"^^ . . . "neurology" . "physiology" . "http://sweetontology.net/matrEquipment/"^^ . . "Nematode & Neglected Genomics" . "gsso" . . . . "Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments"^^ . "Gene Product Information Schema" . . "^SAM[NED](\\w)?\\d+$"^^ . "sequence" . "Sequence types and features ontology" . . "http://purl.obolibrary.org/obo/ECTO_$1"^^ . "nihhesc" . . . "clinical studies" . . . "3d structure" . . "immunology" . "researchgate.profile" . "frbr" . . . "https://www.nfdi.de/wp-content/uploads/2023/08/Fairagro_Logo_mittelachsig_Verklauf_cmyk.png"^^ . "International Generic Sample Number" . . . . . "https://www.cellbiolabs.com/search?keywords=$1"^^ . "AISDevice"^^ . . "false"^^ . . . "pharmacogenomics" . . "Calcite"^^ . . . "uniprot.mnemonic" . . . . . . . "^PT\\d+$"^^ . . . "nfdi4ing" . "structure" . . "0000001"^^ . "life sciences, biology" . "endlessforms.unit" . "sedml.language" . . . . "Reaxys eMolecules" . . . . . "rock" . "polypeptide region" . . . "33"^^ . "mirna" . . "method" . "http://sweetontology.net/phenAtmoPressure/$1"^^ . . . . . "cessda.cdcpublishernames" . . . . . . . . "civic.did" . "^\\d+$"^^ . . . "Agriculture Product Types Ontology" . . "identifier of an entry in the NCI Drug Dictionary"^^ . "prima" . "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis."^^ . . . . "AB0"^^ . "https://rnacentral.org/rna/$1"^^ . . . . "http://sweetontology.net/matr/"^^ . . "suprabank.solvent" . "Carsten Linder" . "sharkipedia.trait" . "27"^^ . "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby."^^ . "history" . "^[a-z]+(\\..*?)?$"^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_qual_"^^ . . . . . . . "https://saref.etsi.org/saref4watr/$1"^^ . "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"^^ . "rbrinkman@bccrc.ca" . . "mirbase.mature" . "pepbank" . . . "ontology/terminology/nomenclature" . "bigg" . . "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1"^^ . "false"^^ . "265912"^^ . . . "OntoRXN is an ontology for the description of reaction networks as undirected graphs characterized by energies."^^ . . . "false"^^ . . . . "MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA)."^^ . "false"^^ . "process" . "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene."^^ . . "Cell Ontology" . . "ecotoxicity" . . . "^102?\\.\\d+\\/.+$"^^ . . . . "24801"^^ . "165a"^^ . . "https://www.inaturalist.org/taxa/$1"^^ . . "deoxyribonucleic acid" . . . "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID="^^ . . . . . . . . "quantitative structure-activity relationship" . "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"^^ . . . "https://biopragmatics.github.io/providers/scomp/"^^ . . . . . "transposable element" . "Manufacturers of Vaccines" . . . "ontology" . "arc"^^ . . "http://edamontology.org/format_$1"^^ . . "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"^^ . . "physiology" . "protein-protein interaction" . . "false"^^ . . . . "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1"^^ . . . "Curated Drug-Drug Interactions Database - Interaction" . . "https://www.fluorophores.tugraz.at/substance/"^^ . . "transcriptomics" . "scancerrna" . . . "000000"^^ . . . "genotype" . . . . . "disease" . "nutritional science" . . "orcid" . "ontology" . "http://purl.obolibrary.org/obo/PORO_"^^ . "SWEET Ontology Phenomena Atmosphere Precipitation" . . . "gene expression" . "An organization" . . "loc" . "https://bio.tools/"^^ . . . . . "https://w3id.org/information-resource-registry/$1"^^ . "paleodb" . "drug" . . "http://rdfs.org/sioc/argument#"^^ . . . . . . . "caripark@iastate.edu" . . "false"^^ . . . . . . . "Library of Congress Resource" . "sbml.level-3.version-2"^^ . "soreacz" . "^PST_\\d+$"^^ . "10087"^^ . . . . "gfbio.ets" . . . . . . . . "semantic web" . "https://europepmc.org/article/CTX/"^^ . "life science" . . . . . "pharmacogenomics" . "false"^^ . . "sequence" . . . . . . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"^^ . . "Sensors in DEIMS SDR"^^ . "The Cell Cycle DB" . . "https://ontome.net/project/"^^ . . . . . . "http://dase.cs.ksu.edu/ontology/food-traceability#"^^ . . . "https://oprlm.org/proteins/"^^ . "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML)."^^ . "obo" . . . "DAPHNE4NFDI Collection" . . . . . . . "obo" . . . . . . . . "human genetics" . "^\\d+$"^^ . "https://w3id.org/nfdi-de/dcat-ap-linkml/"^^ . "BibliographicRecord"^^ . . . "dna sequence" . . "false"^^ . . . . "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID="^^ . "subject agnostic" . . "foster@uchicago.edu" . "oga.t@northeastern.edu" . . . "clinical diagnostics" . "primary health care" . . . . "http://purl.obolibrary.org/obo/GEO_$1"^^ . "embryo" . . . . "https://terminology.hl7.org/CodeSystem-v3-"^^ . . . "Google Books" . . . "klarpsytopics"^^ . "http://lod.taxonconcept.org/ontology/txn.owl#$1"^^ . . . "SAREF extension for Agriculture" . "expression data" . "ecology" . . "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1"^^ . . "^DB-\\d{4}$"^^ . . "schema" . "stweedie@ebi.ac.uk" . "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"^^ . . . . "false"^^ . . "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc."^^ . . "ontology" . . "sfld" . "false"^^ . "http://purl.org/gc/"^^ . "EU Clinical Trials" . . "^\\d{7}$"^^ . . . "https://www.ebi.ac.uk/metagenomics/proteins/"^^ . . . . . "http://purl.obolibrary.org/obo/OMIT_"^^ . . . "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project." . . . "nif" . . "sequence" . "gene-disease association" . . . . "DSSTox substance" . "https://foodb.ca/foods/$1"^^ . . "atsushi.yoshiki@riken.jp" . . . . "chemical structure" . . "ontology" . "Mathematical modeling ontology" . . . . "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects."^^ . . . . . "mechanical engineering, energy technology" . . "function" . "false"^^ . "ontology" . . . "pgxbs-kftva5zv"^^ . . "obo" . "https://www.e-cyanobacterium.org/bcs/entity/"^^ . . . . . "prodom" . . "NONHSAT000001"^^ . "The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma."^^ . "http://purl.obolibrary.org/obo/ONTONEO_$1"^^ . "license" . . . . . "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons."^^ . . "binding site" . . . . . "nihreporter.project" . . "sequence" . . "robert.j.allaway@gmail.com" . . . "International Classification of Diseases, 10th Revision" . . "ontology" . . "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information."^^ . "^\\d{7}$"^^ . . "3SBPLMKKVEVR"^^ . . "With the DataPLANT biology ontology (DPBO), DataPLANT provides an intermediate ontology that acts as a broker and bridge between the individual researcher/domain experts and main ontology providers. DPBO enables easy and agile collection of missing vocabulary as well as relationships between terms for (meta)data annotation using DataPLANT’s Swate tool."^^ . . . "http://purl.bioontology.org/ontology/IDODEN_$1"^^ . "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links."^^ . . "ontology" . "0000319"^^ . . "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . "Library of Congress Authority" . "ChEBI Data Sources" . "http://uri.neuinfo.org/nif/nifstd/nlx_mol_"^^ . . . . "enzymology" . . . . . . . "false"^^ . . . "Gert Vriend" . . "genome/gene" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space"^^ . "aro" . "life science" . . "https://bioregistry.io/hssp:"^^ . "catalogs" . . "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1"^^ . "Universal Spectrum Identifier" . "false"^^ . "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier."^^ . . "false"^^ . "^PTN\\d{9}$"^^ . "Ontology to describe companies and their supply network, employees, products, production materials, industries, events and relations."^^ . . "wd" . "gno" . . . . . . "representation space reference system" . . . . . . "false"^^ . . "SWEET Ontology Material Water" . . "PF" . . . . "10090-chr10qC"^^ . . . . "false"^^ . . . "biomedical science" . _:N19daddd950894579854f63b23caae22b . "^CN\\d+$"^^ . "license" . . . "https://dnasu.org/DNASU/GetCloneDetail.do?cloneid=$1"^^ . "kegg.glycan" . "IMGT/PRIMER-DB" . . . . . "false"^^ . . "sohuj" . "ontology" . . "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs)."^^ . "ChemIDplus" . "false"^^ . "gtr.lab" . . . . . . . . . . . "http://purl.obolibrary.org/obo/MICRO_"^^ . . . . "bbkg" . "metagenomics" . "David.Linke@catalysis.de" . . . . . . . "obo" . . "https://phagedive.dsmz.de/strain/$1"^^ . . . . "^\\d+$"^^ . "dna" . . . . . . . . . . . . "http://web.resource.org/cc/$1"^^ . . "fid baudigital" . "sequence databases" . . "somab" . . "mirbase" . . "false"^^ . "false"^^ . . "nfdi4ing" . "0011140"^^ . "A data model describing machine learning experiments"^^ . . . "interaction" . "http://sweetontology.net/propSpaceDirection/$1"^^ . . "microbial ecology" . "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_"^^ . "408"^^ . . . "https://v31.homd.org/genome/genome_description?gid=$1"^^ . . "society" . . "ncbiortholog" . "false"^^ . "Synthetic Binding Protein Protein Scaffold" . . . . . "proteomics" . "NASA Open Science Data Repository Biospecimen" . . "0001807"^^ . . "false"^^ . "http://sweetontology.net/propSpaceDistance/$1"^^ . . "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1"^^ . . . "Advanced_Meter"^^ . "co_335" . . "diabetes" . . . . "^\\d{8}$"^^ . . . . . "mouse" . "https://vocabs.sshopencloud.eu/browse/$1"^^ . . "sharkipedia" . . . "0000586"^^ . . . "wikipedia" . "sweet.sto" . . . "https://vocabularies.cessda.eu/vocabulary/DateType?lang=en#code_"^^ . "rdbsb" . . "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)" . . "ontology" . . _:N036a74d615bc451196513b2215d43d2c "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . . "ontology" . . . . "The HuBMAP dataset collection provides high resolution molecular data from human tissues, with unique identifiers that enable tracking, citation, and integration of datasets across diverse assay types and donor samples for biomedical research."^^ . "hgnc.symbol" . . . . . . . . "^[0-9]+$"^^ . . "PomBase" . "drug discovery" . "pdro" . . "https://cropontology.org/rdf/CO_350:$1"^^ . . "person" . "https://www.uniprot.org/proteomes/$1"^^ . "ICEberg cis-integrative and mobilizable element" . . . "https://portal.issn.org/resource/ISSN/$1"^^ . "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma."^^ . . . . "Diseases Database" . . . . . "false"^^ . . . "false"^^ . "false"^^ . "false"^^ . . "LRMI Interact Type Vocabulary" . . "molecular chemistry" . _:Nd87dceae200847d3b09cf8cc4216d22f "David Fichtmueller" . . . "https://www.uniprot.org/database/" . "mesh.2013" . "false"^^ . "SWEET Ontology Phenomena Energy" . "plant phenotypes and traits" . "^\\d+$"^^ . "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein."^^ . "^T\\d{8}$"^^ . . . . "https://www.enzyme-database.org/query.php?ec="^^ . . "https://purl.archive.org/tfsco/TFSCO_"^^ . . "0000288"^^ . "gov.ontology" . . . . "https://bioregistry.io/wikigenes:"^^ . "carbohydrate" . "SARS-CoV-2" . . "^\\d+$"^^ . "cryopreserved" . . . "false"^^ . . "chemical structure" . "https://www.ebi.ac.uk/pdbe/entry/emdb/"^^ . . "false"^^ . "false"^^ . . "faseb list" . . . . "wes_schafer@merck.com" . "dna" . "biochemistry" . . . "experimentally determined" . . "protein" . . "h.doerpholz@fz-juelich.de" . "Accept"^^ . "life science" . . . . . . "life science" . "false"^^ . . . . "idsa" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Frequency"^^ . "1900"^^ . "http://www.arachnoserver.org/toxincard.html?id="^^ . . "BTO" . "https://www.dpvweb.net/dpv/showdpv/?dpvno=$1"^^ . "https://horizondiscovery.com/en/search?searchterm="^^ . "4dn.biosource" . . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information."^^ . . "aging" . . . . "false"^^ . "http://sweetontology.net/realmEarthReference/$1"^^ . . . "https://www.w3.org/2019/wot/td#$1"^^ . "^\\d+$"^^ . "Antibiotic Resistance Ontology" . "PXD002255:ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"^^ . "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis."^^ . . . . . "https://idr.openmicroscopy.org/search/?query=Name:idr"^^ . "^\\d{7}$"^^ . "http://sweetontology.net/phenCryo/"^^ . "nif.ext" . . . . "coi" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle Material"^^ . . . . "https://opencitations.net/index/ci/$1"^^ . "true"^^ . "Animal Genome QTL" . . "dna" . "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"^^ . . . "expression data" . . "Darren Natale" . . . . . "https://purls.helmholtz-metadaten.de/prima/core#$1"^^ . "go-term enrichment data" . "An ontology to support comparative effectiveness researchers studying claims data."^^ . "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid="^^ . "genome" . . "biomedical science" . . "Nonribosomal Peptides Database" . . "René Ranzinger" . . . . "ontology" . "life science" . "obo" . . "portal" . . "https://packagist.org/packages/"^^ . . . . . . "ess" . . . "http://www.tcdb.org/search/result.php?tc="^^ . . . . . "false"^^ . . . "http://purl.obolibrary.org/obo/HEPRO_"^^ . . . . . "nfdi4ing" . "linkedin" . . . . "NeXusOntology: Machine-readable ontology of the NeXus definitions"^^ . . "10194"^^ . "https://www.ebi.ac.uk/biosamples/sample/"^^ . . . . "The Human Chromosome Ontology (HCO) provides simple and stable URIs for human reference genome versions to semantically identify human chromosomes."^^ . . . . . . "ontology" . "false"^^ . "bibliometrics" . . . . . . . "sopharm" . . . "https://guolab.wchscu.cn/AnimalTFDB4//#/family_summary/TF/$1"^^ . "Peter D. Karp" . . . . "ontology" . . . . . . . "jonathanmtclark@gmail.com" . "classification" . . . "health" . "rna" . "anatomy" . . . . . . "ontology" . "genome" . . _:N9d47075f233d4499a349dc5db7d69dd0 . . "ontology" . "sequence variant" . . "measurement" . . . _:N8866735613e84d4697207a0e0c55498b "OP-EU-VOCABULARIES@publications.europa.eu" . "AerialPhotography"^^ . "species-environment interaction" . . . . . "eo" . "nfdi4chem" . . . . . . "false"^^ . . . "Bastian Fromm" . . . "omics" . "false"^^ . . . . "Alzheimer Gene Database" . . . . . . . . . "141"^^ . . . "German classification of occupations" . . "Q9P0K8"^^ . . . "Fyler" . . . . . . . . . . . "bibliography/documents" . "obo" . . . . "interaction/pathway" . "digital planning and construction" . "false"^^ . "astrophysical heliosphere" . "phenotype" . . . . "http://purl.obolibrary.org/obo/VariO_$1"^^ . . . "SitEx" . "TUBES system ontology" . . . . "The HPC Ontology describes software, hardware, and artifacts in the domain of High-Performance Computing. It can be used to annotate training datasets and machine learning models used in HPC software analyses and optimizations. The goal is to make datasets and AI models FAIR."^^ . . . . "biomedical science" . . "cdna/est" . . . . "false"^^ . "geography" . . . . . . . "NIF Standard Ontology: Chemical" . "biomedical science" . "BBA0001"^^ . . . "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."^^ . "diseases" . . "The Recommendation Ontology specification provides basic concepts and properties for describing recommendations on/for the Semantic Web."^^ . "life science" . . . "This is the extension of SAREF for the EEBus and Energy@Home project. The documentation of SAREF4EE is available at http://ontology.tno.nl/SAREF4EE_Documentation_v0.1.pdf. SAREF4EE represents 1) The configuration information exchanged in the use case 'Remote Network Management' according to the EEBus Technical Report, Protocol Specification- Remote Network Management, version 1.0.0.2, 2015-09-19; 2) The scheduling information about power sequences exchanged in the use cases Appliance scheduling through CEM and remote start' and 'Automatic cycle rescheduling', according to the message structures described in General Message Structures, version 0.1.1, 2015-10-07; 3) The monitor and control information exchanged in the use case 'Communicate appliance status and info on manually planned cycles', according to the monitoring and control part of the Energy@Home Data Model, version 1.0; and 4) the event-based data exchanged in the use case 'Demand Response', according to General Message Structures, version 0.1.1, 2015-10-07."^^ . . . . "ChemBioSys Model" . "GO Chemicals" . . . . . . "A centralized service for interoperable thesauri, ontologies and classification schemes for different subject areas based on SKOSMOS."^^ . . . . "A project supporting the DRAO application ontology, a hierarchy of specific research domains and descriptors which imports subsets of terms from over 40 publicly-available terminologies. (from repository)"^^ . . . . "^\\d+$"^^ . "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data."^^ . . . "c-terminal amino-acid residue" . . . . "sostsb" . . . "false"^^ . "https://ceds.ed.gov/element/$1"^^ . . "MMP0523"^^ . . "simon.harding@ed.ac.uk" . . "Uber-anatomy ontology" . . "https://data.chembiosys.de/studies/"^^ . "false"^^ . "false"^^ . "^\\d{5}$"^^ . "ubprop" . . "zfs" . . "^[0-9A-Za-z_-]+$"^^ . . . . "ontology" . . . "ess" . . . "chemical formula" . . . "ontology" . . "evidence tiers" . _:Nb784c6d0fea240aa8583ce7c471bf224 "paolo.ciccarese@gmail.com" . "https://disprot.org/$1"^^ . "anatomy" . . . . "0000858"^^ . "false"^^ . . . . . "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1"^^ . . "pathway" . . . . . "cienciavitae" . "http://rdf.webofcode.org/woc/$1"^^ . . . . "ListShape"^^ . . . . "M3G stands for “Metadata Management and distribution system for Multiple GNSS Networks”. M3G allows to upload, validate, and distribute GNSS station metadata such as IGS-style site logs, information about local networks, DOIs, nominal data provision, data licenses attached to the daily RINEX data, etc..."^^ . . "nbvok" . . . . . . "semapv_voc" . "28463"^^ . . . "http://www.proteinatlas.org/"^^ . "protein" . . . "obo" . "https://www.nfdi.de/wp-content/uploads/2022/06/NFDI4DS_Logo.png"^^ . "pass2" . . . . . "Used to encode the video content of a resource"^^ . . "wicell" . "false"^^ . . . . . . . . "http://purl.obolibrary.org/obo/WBls_$1"^^ . . "Metabolites in drugbank"^^ . . . . . . . . "http://worfdb.dfci.harvard.edu/html/index.php?search_type=name&page=showresultrc&race_query=$1"^^ . "sequence" . "Food-Biomarker Ontology" . . . "http://web.resource.org/cc/"^^ . "Ontology for manufacturing and logistics" . "genome" . . "protein" . . "phylogenetic tree" . . . . . . . . "true"^^ . . "fid baudigital" . . "^[0-9]+$"^^ . . "http://purl.org/ontology/rec/core#"^^ . . . "https://www.scopus.com/sourceid/$1"^^ . "nfdi4ing" . "Homologous Vertebrate Genes Database" . "146421"^^ . . "http://data.europa.eu/ett/kos/c_"^^ . "false"^^ . "MGTBind complex" . "health research" . "person" . "antibodies" . . . . . . "^\\d+$"^^ . . "Identifier for a species on the noaa fisheries website"^^ . "brainwave entrainment" . "https://www.checklistbank.org/dataset/"^^ . . . "http://www.arachnoserver.org/toxincard.html?id=$1"^^ . "ontology" . . . "matrixdb.association" . . "hubmap.collection" . . . . "^\\d+$"^^ . . "http://purl.dataone.org/odo/SENSO_$1"^^ . . "dome" . . . . "https://vocabs.ilc4clarin.ilc.cnr.it/skosmos/"^^ . . . . . . . . . "false"^^ . "Microbial Protein Interaction Database" . . "^\\d+$"^^ . "sweet.phatmow" . . . . . . "An ontology for dengue fever."^^ . . . . . "electronic health record" . "false"^^ . . . . . . "Richard Scheuermann" . . . . . "carbohydrate" . . . . . . . . . . . . . "taxonomy" . . . "The ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology provides a taxonomy and thesaurus of photon and neutron (PaN) experimental techniques. Based mainly on accelerator-based light sources and neutron facilities, the primary use of the ontology is to enhance the FAIRness of PaN data catalogues services. The ontology defines specific techniques in terms of more general technique classes and provides synonyms and references."^^ . "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." . "ND50028"^^ . . "applies_to"^^ . "ontology" . . "chemfont.ontology" . "Ontology of Adverse Events" . "OpenCitations Corpus" . . . "http://func.mshri.on.ca/human/genes/list_functional_scores/$1"^^ . . . "neuron" . . "plant" . "cp390@cam.ac.uk" . "World Historical Gazetteer (WHG) is providing a collection of content and services that permit world historians, their students, and the general public to do spatial and temporal reasoning and visualization in a data rich environment at global and trans-regional scales."^^ . . "knowledge and information systems" . . . . "dso" . "entrez" . "ontology" . . "http://purl.obolibrary.org/obo/MMO_$1"^^ . . "mwo" . . "LncBook" . . . "symp" . . . . . "zhengh18@hotmail.com" . "^\\d{7}$"^^ . "EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823"^^ . "SWEET Ontology Phenomena System" . "^\\d{7}$"^^ . . "https://w3id.org/ac-ontology/aco#"^^ . "23"^^ . . . . . "Anatomical Therapeutic Chemical Classification System" . "Charles Tapley Hoyt" . . . "datacite.name" . . "cell line" . . "Ontology Management Environment Profile" . "false"^^ . "phenotype" . . "http://purl.obolibrary.org/obo/MFOMD_$1"^^ . "biocarta.pathway" . . "Ontology for General Medical Science" . . "ensembl.fungi" . "https://herv.img.cas.cz/s/"^^ . "SWEET Ontology Realm Geologic" . "false"^^ . . . . . . "metascience" . . "An international LGBTQ+ linked data vocabulary"^^ . . "145"^^ . . "false"^^ . "A classification of subjects in Hochschulen (Universities and Universities of Applied Sciences)."^^ . "^\\d{7}$"^^ . . "dr.sebastian.koehler@gmail.com" . . . "false"^^ . "population genetics" . . "sequence" . "hasDefaultGeometry"^^ . . . . "phosphoprotein" . "SWEET Ontology Material Element" . . "variants" . "drug" . "toxicology" . . . . "dataplant" . . . "dna" . "International Classification of Diseases, 11th Revision (Foundation Component)" . . . "biologics" . "^RPCEC\\d+$"^^ . . . . . "AU124"^^ . "vega" . . . . . . . . "ontology" . . "biolegend" . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information."^^ . . "template library" . . "false"^^ . "http://sweetontology.net/phenAtmoPrecipitation/$1"^^ . . "dblp" . . "social science" . "mrna" . "epidemiology" . "A domain ontology on food and bioproduct processing and characterization that is a specialization of the PO2 ontology (Process and Observation Ontology)."^^ . . "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1"^^ . . . . . "phenomics" . . . "https://cohesindb.iqb.u-tokyo.ac.jp/browsegene/eachgene/"^^ . . "1"^^ . . . "Brian Aevermann" . . . "false"^^ . "https://oid-base.com/get/$1"^^ . . . . . . "NLXANAT covers anatomy terms. Almost all terms are also in Uberon."^^ . . "ontology" . "SWEET Ontology Human Environmental Assessment" . "http://www.phi-base.org/searchFacet.htm?queryTerm=PHI:"^^ . . . . . . "false"^^ . . . . . "sweet.mas" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Animal"^^ . . . . . . "portal" . . "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria."^^ . . "chebi" . "false"^^ . . "curricula" . . "https://www.jax.org/strain/"^^ . "https://pk-db.com/data/"^^ . . . . "sequence" . "https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem="^^ . . . . . . . . . . . "complex" . . "^\\d+$"^^ . . . . . . . . . "^\\d{4}$"^^ . . "anatomy" . . "drug discovery" . . . "An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus."^^ . . . . . . "0000001"^^ . . "MNEST029358"^^ . "pathway" . . . . "vibrotactile stimulation" . . "^\\d+$"^^ . . "Human Dermatological Disease Ontology" . "https://credit.niso.org/contributor-roles/"^^ . "0107180"^^ . "https://www.gbif.org/species/$1"^^ . "false"^^ . . "Ontology about the gross anatomy of the C. elegans"^^ . "DCAT-AP conversion to LinkML Schema" . . "dmba" . "false"^^ . . "1"^^ . "genome" . . . . . . . . . "http://purl.obolibrary.org/obo/ExO_"^^ . "Namespace in the Ontology Management Environment"^^ . "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information."^^ . "^[a-z0-9]{32,32}$"^^ . "Identifier of an entry from the AAindex database."^^ . . "SEON provides a well-grounded network of software engineering reference ontologies, and mechanisms for deriving and incorporating new integrated domain ontologies into the network. [from homepage]"^^ . "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$"^^ . . . . . . "BatchelorC@rsc.org" . . . . . . . "Pathway Commons" . "CESSDA Topic Classification" . . "https://w3id.org/gaidet/"^^ . . "genome" . "Web of Science ResearcherID" . "M0001"^^ . . "International Nonproprietary Names" . . . "health/disease" . . . . . . . . _:Nbeec3e5a3b644334bf05c3034981105a "Kenji Naritomi" . . . . . "ddi.numerictype" . . . "false"^^ . "http://purl.obolibrary.org/obo/FBSP_$1"^^ . . . "plant phenotypes and traits" . _:N150ce606dfb74666be68be36061cf5c1 "custserv@nlm.nih.gov" . "128796-39-4"^^ . . . . "obo" . "https://bioregistry.io/resolve/github/issue/"^^ . "spdx.license" . "false"^^ . . . . . . "life science" . "https://www.nextprot.org/db/entry/"^^ . . . "bibliometrics" . "https://togoid.dbcls.jp/#$1"^^ . . . _:N9ee0403cae254e93bcdfb55148d15924 . . "https://www.checklistbank.org/dataset/$1"^^ . . . "https://registry.identifiers.org/registry?query=MIR:"^^ . "The PMD Core Ontology (PMDco) is a comprehensive framework for representing knowledge that encompasses fundamental concepts from the domains of materials science and engineering (MSE). The PMDco has been designed as a mid-level ontology to establish a connection between specific MSE application ontologies and the domain neutral concepts found in established top-level ontologies. The primary goal of the PMDco is to promote interoperability between diverse domains. PMDco's class structure is both understandable and extensible, making it an efficient tool for organizing MSE knowledge. It serves as a semantic intermediate layer that unifies MSE knowledge representations, enabling data and metadata to be systematically integrated on key terms within the MSE domain. With PMDco, it is possible to seamlessly trace data generation. By building on this foundation, PMDco facilitates the integration of data from various sources and the creation of complex workflows. In summary, PMDco is a valuable tool for researchers and practitioners in the MSE domains. It provides a common language for representing and sharing knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless traceability of data generation. Overall, PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain. PMDco at GitHub: https://github.com/materialdigital/core-ontology Documentation: https://materialdigital.github.io/core-ontology/docs/"^^ . . . . "Journal Storage" . "false"^^ . "Affine"^^ . . . . . "molecule" . "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace."^^ . "microRNA Gene Database" . "data set" . "https://www.cienciavitae.pt/"^^ . "CM0001120"^^ . . . . . . . . "The Chromosome Ontology is an automatically derived ontology of chromosomes and chromosome parts."^^ . . . "cellular_component" . "ontology" . "AutoConvectiveLapseRate"^^ . . . . "Atom is an XML-based document format that describes lists of related information known as \"feeds\". Feeds are composed of a number of items, known as \"entries\", each with an extensible set of attached metadata. For example, each entry has a title. (from homepage)"^^ . . "A 7-character sid consists of \"d\" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1."^^ . "ontology" . "^B\\d+$"^^ . . "https://www.kegg.jp/entry/$1"^^ . "A Reference list of Metabolite names" . "sweet.propsm" . . . "ConoServer" . "ontology" . . . "scopus.work" . . "https://ssrn.com/author="^^ . . . . "molecular entity" . . "http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"^^ . . . "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites."^^ . . . "ontology" . . . "ribonucleic acid" . "Database of human Major Histocompatibility Complex" . "^\\w{4}$"^^ . "synthetic biology" . "molecule" . . "ssbd.dataset" . . . . "http://data.europa.eu/esco/occupation/"^^ . . "Zhang Zhang" . . . "The \"Neuroscience Information Framework Gross Anatomy\" was developed as part of the NIF Standard Ontologies. It extended NeuroNames by including terms from BIRNLex, SumsDB, BrainMap.org, etc.; for multi-scale\nrepresentation of the nervous system and macroscopic anatomy. For more information, see the article \"Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach\" \nFT Imam et al, Front Genet 2012 Jun 22; 3:111. doi: 10.3389/fgene.2012.00111. eCollection 2012 https://pubmed.ncbi.nlm.nih.gov/22737162/"^^ . . . "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB."^^ . . . "http://purl.org/spar/pro/$1"^^ . "hms.lincs.antibody" . . "organelle" . "spectrometry" . . "^GR\\:\\d+$"^^ . . "Type"^^ . "deoxyribonucleic acid" . "mass spectrum" . . . . . . "TAIR Locus" . "UBREL" . "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID="^^ . . "http://www.yeastract.com/view.php?existing=locus&orfname="^^ . . . "Assembly"^^ . . . "stacia@stanford.edu" . . . _:N8a5ab4b7ee874feb9f6c4c7af488934e "Raul Palma" . . . "AbsoluteInstability"^^ . . "chemical" . . . . "Human Pluripotent Stem Cell Registry" . . "The Audio Commons Ontology" . "http://purl.allotrope.org/ontologies/result#AFR_"^^ . . "http://sweetontology.net/propMass/"^^ . . _:N81d0534ad8814e9da46c0ce50caac704 "RxNorm Customer Service" . . . . "functional genomics" . . . "assay" . . . "ontology" . . . . . . . "sweet.reaab" . . . "ontology" . "http://stormo.wustl.edu/ScerTF/details/$1"^^ . . . . "false"^^ . . . "false"^^ . . . "SysBioCancer2022"^^ . . . . "false"^^ . "sequence" . . . . "logiserv" . . . . "https://www.atcc.org/products/$1"^^ . . . "^\\d+$"^^ . "6200"^^ . "dcat" . "FMU"^^ . "https://fcs-free.org/fcs-database?"^^ . . . "https://nanbyodata.jp/disease/NANDO:"^^ . "dna" . "Neural ElectroMagnetic Ontology" . . "http://purl.obolibrary.org/obo/CHEBI_$1"^^ . "life science" . "ontology" . . "HMS LINCS Compound" . "http://www.phosphosite.org/siteAction.do?id="^^ . "BlastRules (identifiers starting with the “NBR” prefix) are a type of evidence for functional classification of proteins based on BLAST (Basic Local Alignment Search Tool). A BlastRule consists of one or more 'model' proteins with known biological function, and BLAST identity and coverage cutoffs. Any protein aligning to a model protein above the cutoffs is considered a BlastRule hit. [from homepage]"^^ . "obo" . . . . . . . . . "^MTBL[CS]\\d+$"^^ . . . _:N8866735613e84d4697207a0e0c55498b . "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon."^^ . "ontology" . . "iuphar.receptor" . . . . "pandura@mrc-lmb.cam.ac.uk" . "rna" . . . . . . _:N6955793c545e4473bd0056bb7fffeaae "cs@firstdatabank.com" . . "ontology" . . "lorenz.reimer@dsmz.de" . . "https://www.ebi.ac.uk/intact/interaction/$1"^^ . "Interconnect Forecasting Ontology" . . . "http://biocyc.org/getid?id=$1"^^ . . . . "false"^^ . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Energy Flux"^^ . . . "pathway" . . . . "bioinformatics" . "material science" . . . "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier."^^ . . "ddi" . . "Mass spectrometry ontology" . . "ontology" . "rgd.strain" . . . "protein" . . . . . . "^\\d{6}(-\\d+)?$"^^ . "http://sweetontology.net/propCapacity/$1"^^ . . . "pharmgkb.gene" . "lcnafid" . . . "ccf" . . "^\\d+$"^^ . . . . . "Takeya Kasukawa" . "An ontology to describe entities related to cardiovascular diseases"^^ . "endlessforms.graphic" . "pir" . . . . "http://purl.obolibrary.org/obo/OPL_"^^ . "false"^^ . "Publisher Item Identifier" . "ontology" . . . . "lincs.protein" . . . . "knockrbp" . "NCit" . "https://smc.jgi.doe.gov/bgc/"^^ . . . . "http://purl.obolibrary.org/obo/AERO_$1"^^ . . . "hasIncentiveType"^^ . "UniProt Protein" . . "bigg.reaction" . . . . "Barbara Magagna" . . . "schalk@unf.edu" . . . . . "Markus Stocker" . "Marie-Angélique Laporte" . . "sigmaaldrich" . . "structure" . "biology" . . "^[0-9][A-Za-z0-9]{3}$"^^ . "Standard set of characters upon which many character encodings are based (Wikipedia)."^^ . . . . . . . . . "Matthias Samwald" . . "phenomics" . "biological regulation" . . . "https://swissmodel.expasy.org/repository/uniprot/$1"^^ . . . "http://purl.obolibrary.org/obo/CTENO_"^^ . . . _:Nfd2cb059d9074019a5a994d1c755834a . . "^[0-9]+$"^^ . . "^\\d{7}$"^^ . . . "http://www.imgt.org/ligmdb/view?id=$1"^^ . . "natural science" . . . . "https://www.nextprot.org/term/$1"^^ . . "530"^^ . "A structured controlled vocabulary of stage-specific anatomical structures of the developing human."^^ . . . . . . "nort3314"^^ . _:N9d7af16fe5364390a6a68b5ab4d15fe2 . . "bio.tools" . "icaltzd" . "cnrs" . . "Carissa Bleker" . . . . . . "tgv139393198"^^ . . . "http://www.w3.org/ns/shacl-node-expr#"^^ . . "genome annotation databases" . "https://nztcs.org.nz/nztcs-species/$1"^^ . . . . . "http://gov.genealogy.net/ontology.owl#$1"^^ . "drugbank.metabolite" . . . "Cell line collections (Providers)"^^ . "http://purl.allotrope.org/ontologies/equipment#AFE_"^^ . "bgee.gene" . "Description of a Project" . . . . . . "xfid" . . . . "500202846"^^ . . . . "MDB00000001"^^ . "cattleqtldb" . "addicto" . "Kathryn Dumschott" . _:Nfe267ce023634d3eba513fe740e002a5 "Steven John Zimmerly" . . "materials" . . . "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val="^^ . "VMH metabolite" . . "structure" . "BioContext contains modular JSON-LD contexts for bioinformatics data." . . "sweet.relph" . . . "https://vocabs.acdh.oeaw.ac.at/oeai-cultural-periods/$1"^^ . . . "ontology" . "otol" . . . "Alzforum_mut" . "https://www.vmh.life/#metabolite/$1"^^ . "ontology" . . . . "iNaturalist Place" . "matrixdb" . . . . "false"^^ . . "SPARQL Operation" . . "co_327" . . . "structural biology" . . . "interaction/pathway" . "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products."^^ . "differential gene expression profiling" . . "energy" . . . . . . "Jian Huang" . . "mathematics" . _:N31bdd1e02e44480290b152f3e639b36a "Caty Chung" . . . . "false"^^ . "Units of measurement ontology" . "wdduncan@gmail.com" . . . . . . "http://purl.obolibrary.org/obo/DUO_"^^ . "SWEET Ontology Realm Geologic Oceanic" . . . "0000041"^^ . . . . "ocean coastal" . . . "Google Patents" . . . . "http://purl.obolibrary.org/obo/HsapDv_$1"^^ . "http://sweetontology.net/phenWaveNoise/"^^ . . . . "deoxyribonucleic acid" . . . "obo" . . "fairmat" . "Research Organization Registry" . . "ontology" . "NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc."^^ . "Philipp.Bucher@sib.swiss" . . "Geonamaes" . . "false"^^ . . . . . . . "sbml" . "sequence" . "https://www.ebi.ac.uk/metabolights/"^^ . . . "NOAA Fisheries Species Directory" . . . . . . "^[0-9]*$"^^ . "ess" . . . "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources."^^ . "RIKEN Bioresource Center Cell Bank" . . "sequence annotation" . "ido" . . . . . . "selventa" . . . "Ontology Management Environment (OntoME) is a web-based environment for curating a collaborative ontology based on CIDOC-CRM."^^ . . . . . . "miscellaneous" . "Controlled list of Subject Schemes"^^ . . "experimental measurement" . . . . "false"^^ . . "SWEET Ontology Realm Land Fluvial" . "ontology" . "https://www.cropontology.org" . . "https://www.metabolomicsworkbench.org/databases/refmet/refmet_details.php?REFMET_ID=$1"^^ . "sequence" . "00023232"^^ . . "ontology" . "zpid" . . . . "5.1"^^ . . . . "kegg_genome" . "http://bimerr.iot.linkeddata.es/def/material-properties#$1"^^ . . "dictyBase Expressed Sequence Tag" . "genome/gene" . . "false"^^ . . "icd11.code" . "allotrope.result" . . . . "EndlessForms Studio Image Collections" . . "Physico-chemical process" . . . "Melanoma Molecular Map Project Biomaps" . . "false"^^ . . . "ordinal" . . . . . "sweet.stro" . . . "true"^^ . . . . . . . "rgd" . . . "^\\d{7}$"^^ . "protein" . "false"^^ . . "organism" . "SWEET Ontology State Role Representative" . . "false"^^ . "http://cutdb.burnham.org/relation/show/$1"^^ . "ontology" . "5fde96bdc5f1aa9ff0cce18a"^^ . . . "gene prediction" . . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues."^^ . . . "gfo" . . . . "https://w3id.org/i40/sto#$1"^^ . . . "pathology" . "Nobutaka Mitsuhashi" . . . . "SWEET Ontology Phenomena Planetary Climate" . . "https://purl.dataone.org/odo/MOSAIC_"^^ . . "ontology" . . "soreagb" . . "T0599"^^ . . "A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state."^^ . . . "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."^^ . . . "false"^^ . . "Feature Type Thesaurus" . "http://sweetontology.net/stateDataProcessing/"^^ . . . . "slctr" . "transcriptomics" . "false"^^ . . . . . . . "http://purl.org/oban/"^^ . "BiochemicalState"^^ . . . . . . . . . . . . "100394"^^ . . "chempro.probe" . "botany" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Geologic"^^ . . "Vlado Dancik" . "^\\d{2,7}-\\d{2}-\\d|DTXSID\\d{7,9}|[A-Z]{14}-[A-Z]{8}[SN][A-Z]-[A-Z]$"^^ . "NASA Open Science Data Repository Subject" . "http://www.fairsharing.org/ontology/subject/SRAO_$1"^^ . . . . "https://thebiogrid.org/interaction/$1"^^ . . "preclinical studies" . . . "^[A-Za-z][A-Za-z0-9]+$"^^ . "false"^^ . "https://www.xenbase.org/entry/$1"^^ . . "false"^^ . "http://www.molbase.com/en/index.php?app=search&search_keyword="^^ . "morphology" . . . "ordb" . . "false"^^ . . . . . . "transformation"^^ . . "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym="^^ . . . . . "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms."^^ . . . "false"^^ . "obo" . . "138488"^^ . . . . . . "https://fcs-free.org/fcs-database?$1"^^ . "false"^^ . . . . . . "^[A-Za-z0-9]+$"^^ . . . . "mbrochhausen@uams.edu" . . . . "1"^^ . . . . "sostdp" . . "urdbms.syndromefinder" . "false"^^ . . . . "http://terminology.lido-schema.org/identifier_type/$1"^^ . . "woc.ontology" . "omics" . "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . . "ArachnoServer" . . . "http://rs.tdwg.org/format/$1"^^ . "https://w3id.org/fair/principles/terms/"^^ . . "chromosome structure variation" . . . . "api" . . . . "0001056"^^ . . "http://www.w3.org/2002/12/cal/icaltzd#"^^ . "MetaCyc" . . . "educational resources" . "Datasets inside StoreDB at University of Cambridge"^^ . . . . "bioactivities" . "https://data.legilux.public.lu/vocabulaires/$1"^^ . . . . . . "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN."^^ . "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors."^^ . "false"^^ . . "false"^^ . . . "sorepdsa" . . . . "obo" . . . "Hymenoptera Anatomy Ontology" . . . . "ribosomal rna" . . . . "plasma physics" . . . "human" . "symptom" . . . "false"^^ . . . "yoh@dartmouth.edu" . "SWEET Ontology Representation Mathematics Statistics" . . . . . . . . "dispositions" . . "health/disease" . . "empiar" . "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."^^ . "EvaluatedActivity"^^ . . . "n.queralt_rosinach@lumc.nl" . . "research" . . . . . . . "AY209920"^^ . "ontology" . . "ligandexpo" . "conserved region" . "fair" . . . "sequence" . . "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information."^^ . "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps."^^ . "ncats.bioplanet" . . "chemical entity" . . . "https://www.checklistbank.org/dataset/3LR/taxon/"^^ . "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.\nWikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others."^^ . . . "0807.4956v1"^^ . . . "https://rism.online/"^^ . . "ontology" . "small molecule" . . . "law" . "https://vocabularies.cessda.eu/vocabulary/DataSourceType?lang=en#code_$1"^^ . "bioregistry" . . . "https://www.enzolifesciences.com/"^^ . . "sophgg" . "obo" . "A list containing storage containers for data."^^ . . . "wb" . . . . . . . "life science" . . "rov" . . . . "false"^^ . "elemental molecule" . . "Ontology about C. elegans and other nematode phenotypes"^^ . . . . . . . "^\\d{4}-\\d{3}[\\dX]$"^^ . "false"^^ . . "ortholog" . . "neurophysiology" . . . . . "true"^^ . "to" . . . . . "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification."^^ . . "false"^^ . . . "http://purl.org/dcx/lrmi-vocabs/educationalAudienceRole/"^^ . "This ontology is designed to support data search, retrieval and information identification in the EJP-RD catalogs which covers the registries and biobanks for rare diseases. (from repository)"^^ . . . . "function analysis" . . . "leafsnap" . . . . . "genetics" . . "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments."^^ . . . . . . "FAO/WHO_standards" . . "ontology" . . . "Foods in FooDB"^^ . . . "http://purl.obolibrary.org/obo/OGG_$1"^^ . . "http://thesauri.dainst.org/en/concepts/"^^ . "health monitoring" . "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."^^ . "metabolite" . "chemical biology" . . "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories."^^ . "https://umgear.org/p?id="^^ . . . . "cellular localization" . . . . . . . . . "India Clinical Trials Registry" . . . . . . . . . . "druzinsk@uic.edu" . . "Eschmeyer's Catalog of Fishes" . "false"^^ . "structure" . . . . . . . "Leibniz Institute for Psychology Vocabularies" . . . . "antifam" . . . "vso" . . "oecd.template" . . "SHACL Node Expression" . . . . "0000208"^^ . . . . . . . "icdo" . . . "brenda.ligandgroup" . "mathematics" . . . . . "https://gs1.org/voc/"^^ . "http://purl.org/heritagedata/schemes/eh_tbm/concepts/"^^ . . "ontology" . "http://purl.obolibrary.org/obo/OPL_$1"^^ . _:N2d2bdb8f36b846d089477071249aa32c "Barbara Magagna" . . . . "ontology" . . . "chemical and environmental engineering" . . . "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:"^^ . "^\\d+$"^^ . . . . . "dialnet.journal" . "^\\d{7}$"^^ . "nfdi4ing" . "device" . . . "ontology" . . "http://www.wikidata.org/entity/$1"^^ . . "The Environmental Thesaurus is a controlled vocabulary built to aid integration of the data resulting from long term ecological research and monitoring in Europe (eLTER). It provides described and semantically well defined terms for later analysis and it serves as harmonized specification of parameters in the observation and measurement of ecosystem processes."^^ . "^DDB_G\\d+$"^^ . "117"^^ . "life cycle" . . "GCA_000155495.1"^^ . . "1"^^ . "cog" . . . . . "http://purl.obolibrary.org/obo/ONTONEO_"^^ . "GeoSpecies Ontology" . "false"^^ . "Benjamin.Zapilko@gesis.org" . . . . "^\\d{7}$"^^ . . "hipsci" . "experimental measurement" . "https://bioregistry.io/cazy:"^^ . "http://purl.obolibrary.org/obo/FAO_"^^ . "array design" . . "https://string-db.org/cgi/network?identifier="^^ . . . . . . . "saref" . "digital planning and construction" . . "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats."^^ . "SWAP Logic Ontology" . . . "https://biopragmatics.github.io/providers/uniprot.ptm/"^^ . . "space location" . "developmental biology" . . "AngularCoordinate"^^ . . . . "nfdi4culture.id" . . . . . "bioinformatics" . "csd" . "arc"^^ . "genome/gene" . . "homosaurus" . . "SWEET Ontology Phenomena Geologic Seismicity" . . . "http://sweetontology.net/realmLandAeolian/$1"^^ . . . . . "0019030"^^ . "mutant mouse repository" . . . . "fr" . "virmirdb" . "cdna/est" . . "The annotation ontology provides vocabulary that enables users to attach custom descriptions, identifiers, tags and ratings to resources on their desktop. Via other properties, the user is also able to make generic relationships between related resources explicit. Some relationships between resources are too general to be included at the domain ontology level. Instead, these properties are also defined in the annotation ontology. Given the high-level status of this ontology, these propreties can be used to link any related resources on the user's desktop, as well as provide custom human-readable textual annotations. (from homepage)"^^ . . "human" . . . . "http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1"^^ . "obo" . . "MetaCyc is a database of non-redundant, experimentally elucidated metabolic pathways and enzymes. It also contains reactions, chemical compounds, and genes. It stores predominantly qualitative information rather than quantitative data, although it does contain some quantitative data such as enzyme kinetics data.\n\nMetaCyc is [curated](http://www.biocyc.org/glossary.shtml?sid=biocyc14-3908554027#Curation) from the scientific experimental literature according to an [extensive process](https://metacyc.org/MetaCycUserGuide.shtml#TAG:__tex2page_sec_4)]. The majority of pathways occurring in it are from microorganisms and plants. MetaCyc stores thousands of additional enzyme-catalyzed reactions that have not yet been assigned an EC number"^^ . "soprocw" . "nif" . . . . . . . . . . "^PED\\d{5}e\\d{3}$"^^ . . . "paxdb.organism" . . "rna" . "astrophysical body" . "phenotype" . "RNACentral" . "A vocabulary describing subjects taught in German primary and secondary school (not university/hochschulen), such as German, math, and art."^^ . . "subject agnostic" . "https://bioregistry.io/metaregistry/prefixcommons/"^^ . "developmental biology" . "GeoNames" . . . . . "HoloFood sample" . "chemical" . "http://purl.obolibrary.org/obo/BCO_$1"^^ . "drug name" . . . . "physics" . . "omics" . . . "ENCSR163RYW"^^ . . . . "^[SED]R[APRSXZ]\\d+$"^^ . . "human" . "http://purl.obolibrary.org/obo/CTENO_$1"^^ . . "false"^^ . "agriculture" . "biology" . . . "learning resources" . . . . . "covid-19" . . . . "false"^^ . "Lifestyle Factors Ontology" . "nucc.characteristic" . . "NFDI4Earth Collection" . "Database of Macromolecular Movements" . "ontology" . . . "InChI" . . "http://purl.obolibrary.org/obo/WBbt_$1"^^ . . . "biodiversity" . "natural language processing" . "Oonagh Brendike-Mannix" . "echobase" . . . . "http://cgsc.biology.yale.edu/Site.php?ID="^^ . . . . "https://bioregistry.io/linguist.gold:"^^ . . . "CQG5"^^ . . . "Bong Hyun Sung" . "false"^^ . . . "http://purl.obolibrary.org/obo/VTO_$1"^^ . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human"^^ . . "rna secondary structure" . "Ontology of Organizational Structures of Trauma centers and Trauma systems" . "ontology" . . . . . "horticulture" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock Igneous"^^ . "subject agnostic" . . . . "ontology" . . "gesis.rexgroups" . . . "^\\d+$"^^ . "bibliography/documents" . . "peptide" . "nb2018006591"^^ . . . "life science" . _:N0a50a836658243c6a3a1e134a8a2ac36 "Allotrope Foundation" . "protein" . . "https://www.osti.gov/biblio/"^^ . . . . . "fid baudigital" . . "pspub" . . "rna" . "high content screen" . . . "Dialnet article" . "disprot.region" . "true"^^ . . . . . . "http://purl.obolibrary.org/obo/PLANP_"^^ . "nfdi4ing" . . "Ulrik Stervbo" . . "false"^^ . . . "nlx.sub" . . . . . "https://www.phenxtoolkit.org/protocols/view/"^^ . . "^\\d+$"^^ . "https://unicarb-db.expasy.org/msData/"^^ . "^[A-Z][A-Z0-9_]+\\.PE\\d+$"^^ . "interaction" . . "ErdeUndKosmos"^^ . . "false"^^ . . "structure" . . . "NCBI Protein" . . . . "Neil McKenna" . "http://sweetontology.net/matrNaturalResource/"^^ . "IID00001"^^ . "21552"^^ . . "MMP3888430"^^ . . . "geography" . . . . "ess" . "agriculture" . "http://localhost/plosthes.2017-1#$1"^^ . "COEXISTENCE - Thesaurus of intersectionality and decolonial issues: black studies, gender, sexuality and feminist studies"^^ . . . . . . . . . "chemical compound" . . . . . . . . . "true"^^ . . "bioresource" . . "This ontology extends the SAREF ontology for the environment domain, specifically for the light pollution domain, including concepts like photometers, light, etc."^^ . . . "genome annotation" . . . "Susan J. Brown" . "gtex" . . . . . . . "ontology/terminology/nomenclature" . "https://labsyspharm.github.io/lspci/"^^ . . "AirPollution"^^ . . "^\\d+$"^^ . . "structure" . "organism" . "http://purl.allotrope.org/ontologies/quality#AFQ_"^^ . "false"^^ . . "Serhii Nazarovets" . . "false"^^ . . . "treehub" . . "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence."^^ . . . "dna" . . "http://gmd.mpimp-golm.mpg.de/Spectrums/"^^ . . . . . "nlx.oen" . "nfdi-matwerk" . . . "diagnostic product" . "ontology" . "http://clipserve.clip.ubc.ca/topfind/proteins/$1"^^ . . "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$"^^ . . "https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/$1.html"^^ . . "https://www.bv-brc.org/view/Feature/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Coastal"^^ . . _:N8ede2221abf4493e9a5a77b36257d8d4 . . . . "tissue" . "BlackWater"^^ . "false"^^ . "ontology/terminology/nomenclature" . "3d structure databases" . "https://suprabank.org/molecules/"^^ . "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"^^ . . "Yungang.Xu@xjtu.edu.cn" . "repository" . . _:Na8ff46ff061a4e4a820f4d98132c5c3a "Steve Ray" . "toprea@salud.unm.edu" . "http://purl.obolibrary.org/obo/AfPO_$1"^^ . . "k.dumschott@fz-juelich.de" . "http://fossilworks.org/?a=taxonInfo&taxon_no=$1"^^ . "ddi.generaldataformat" . "^[A-Z][a-z][0-9]+$"^^ . . . "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences."^^ . "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1"^^ . . . . "DataProcessing"^^ . "EDAM Operation" . . "adrienrougny@gmail.com" . "brc" . . . . . . "MCDS_S_0000000001"^^ . "genotype" . . . . "https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry?primaryAC="^^ . . "molecular interaction" . "^\\d{7}$"^^ . . . . "3d structure" . . "phylogenomic databases" . "The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library"^^ . . . . "chemical entity" . "insertion sequence" . "SWEET Ontology Phenomena Solid" . . . "https://si-digital-framework.org/kcdb-sc/"^^ . . "rcb" . "emg" . "IMGT HLA" . "sweet.maen" . "true"^^ . "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals."^^ . "https://saref.etsi.org/core/$1"^^ . . . "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas="^^ . "biology" . . . "http://purl.obolibrary.org/obo/GSSO_"^^ . . . . "classification" . . . . "PTM" . "classification" . . . . "0000685"^^ . . . "nfdi4ing" . "geosparql" . "Lynn Schriml" . "Nathan Sheffield" . . . . "false"^^ . "http://www.narcis.nl/publication/RecordID/$1"^^ . "10595"^^ . "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases."^^ . "cell biology" . . "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1"^^ . . . "protein" . . "cell line" . "ontology" . "genome" . . "http://uri.neuinfo.org/nif/nifstd/sao$1"^^ . . "LogiCO contains the core concepts and properties used in the logistics domain, and mappings (as annotations) to UN/EDIFACTS Data elements."^^ . "https://www.lidcast.co.uk/ontologies/RE#$1"^^ . . "https://www.drugbank.ca/categories/"^^ . . "https://biopragmatics.github.io/providers/sfam/"^^ . "^\\d{7}$"^^ . . "A controlled vocabulary for education levels, such as primary eduation, secondary education, and post-secondary education"^^ . "ontology" . . . . . . "false"^^ . . . "curated information" . "chip-seq assay" . "subject agnostic" . . "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/"^^ . . "https://www.ncbi.nlm.nih.gov/gene/$1/ortholog"^^ . . "dwelter.ontologist@gmail.com" . "^\\d+$"^^ . "chromosomal aberration" . . "http://purl.org/heritagedata/schemes/agl_et/concepts/$1"^^ . "Toni Gabaldón" . "EGID" . . . "https://www.langual.org/langual_thesaurus.asp?termid="^^ . "090701"^^ . "HMS-LINCS" . "SWEET Ontology Material Biomass" . . . "C138986"^^ . "1000"^^ . "quantification" . . . . "The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for bacteria and archaea sources linked to their associated set of biosynthetic gene clusters (BGCs)."^^ . . . . "An ontology of predicates for actions in SIOC"^^ . . "false"^^ . . . . "A hybrid chemical enyclopedia and supplier advertizing system for chemicals."^^ . . "rna-binding protein" . . . . . "cosmic" . "Themes listed in GEMET"^^ . "false"^^ . . "ontology" . . . . "miscellaneous databases" . . . "false"^^ . "gfrishkoff@gsu.edu" . . . . "nfdi4chem" . . "This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase."^^ . "false"^^ . . . "http://pax-db.org/#!protein/"^^ . . . . . . . . "social and behavioural science" . "Extensible Markup Language" . . "NodeShape"^^ . . . . . "ontology" . . . "false"^^ . . . . "chemistry" . . "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1"^^ . . . . . . "https://data.4dnucleome.org/experiment-set-replicates/$1"^^ . "https://iconclass.org/"^^ . . . . "Jianmin Wu" . . "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature."^^ . . . "false"^^ . . . . . "genome" . "https://www.genecards.org/card/"^^ . . "An application ontology designed to annotate next-generation sequencing experiments performed on RNA."^^ . "^\\d+$"^^ . "ess" . "Clear"^^ . . . . . . . . "https://elementsofmorphology.nih.gov/index.cgi?tid=$1"^^ . . . . "Antibodypedia gene" . . . "genomics" . "GO.xrf_abbs" . . . "anatomy" . . . . "genome/gene" . . "http://uri.neuinfo.org/nif/nifstd/oen_$1"^^ . "Identifiers for payloads associated with experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . "438782"^^ . . . . . . "National Swine Resource and Research Center" . "genome" . "https://cgap.nci.nih.gov/Pathways/BioCarta/"^^ . . . . . "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"^^ . . . "mentions" . . "ontology/terminology/nomenclature" . "gene" . . . . . . . "ac.variant" . . . . . "environmental science" . . "http://purl.org/ieee1872-owl/cora$1"^^ . "Troy Pells" . "http://zinc15.docking.org/substances/$1"^^ . . . . "annotatesResource"^^ . . . "http://purl.bioontology.org/ontology/npo#NPO_"^^ . . "drug target" . "chemical entity" . . . . . "^\\d{7}$"^^ . . "http://sweetontology.net/relaTime/"^^ . . "health/disease" . . . . "Cryo Electron Microscopy ontology" . . . "proco" . . "genome/gene" . "SWEET Ontology State Thermodynamic" . . "^[1-9]\\d{0,11}$"^^ . "cordis" . . "pathogen" . "interaction" . "4685"^^ . "false"^^ . . . "Broad Fungal Genome Initiative" . . . "descriptor" . "https://amoebadb.org/amoeba/app/record/gene/$1"^^ . . "sopropsl" . . "An ontology for the description of information objects."^^ . "http://purl.org/ieee1872-owl/cora"^^ . . . "false"^^ . . . "nasaosdr.biospecimen" . . _:N48031e6e411641c0bec684d51808fa27 . "molecular biology" . . "chemical and environmental engineering" . "true"^^ . . . "^(SMP|PW)\\d+$"^^ . "genome" . "Immunology Database and Analysis Portal (ImmPort)" . . "protein" . . "obo" . "Dengue Fever Ontology" . "^\\d+$"^^ . . "true"^^ . . . . "false"^^ . . "true"^^ . "oim" . "http://www.w3.org/ns/shacl#"^^ . . . . "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms."^^ . . . "life science" . . "http://bimerr.iot.linkeddata.es/def/information-objects#"^^ . . "ontology" . "http://purl.obolibrary.org/obo/CLM_"^^ . "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species."^^ . . "false"^^ . . "Fixed"^^ . . "CHMO, the chemical methods ontology, describes methods used to"^^ . . . . . "Grenada"^^ . . "genetics" . . . "protein" . . "protein" . . "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems."^^ . "JRBC Cell Bank" . "false"^^ . . "NLXOEN" . . . . . "https://www.imanislife.com/?s=$1"^^ . . "David Eisenberg" . . "http://purl.obolibrary.org/obo/AMPHX_"^^ . . "https://mediadive.dsmz.de/solutions/"^^ . "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_"^^ . "obo" . "Identifiers repesent antimicrobial peptides in the Data Repository of Antimicrobial Peptides (DRAMP) database which is an open-access, manually curated database of antimicrobial peptides (AMPs)."^^ . . . "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/"^^ . . "NIST" . . . "Robert Allaway" . "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1"^^ . . . "ontology" . "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures."^^ . . . . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/"^^ . . . . . . "^sbp\\d+$"^^ . "sweet.proptg" . . . . . . . "Michael Hucka" . . . "0000550"^^ . . . . . . . . "http://purl.obolibrary.org/obo/AISM_"^^ . . . "ontology" . "https://hdl.handle.net/hdl:20.500.12633/"^^ . "genotype" . "http://purl.obolibrary.org/obo/MIRO_"^^ . . . . . . . "Personal Information Model" . "Lebanon Clinical Trials Registry" . "http://sweetontology.net/realmLandform/"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Decision"^^ . . "nfdixcs" . . "Carsten Kettner" . . . "false"^^ . . . . "false"^^ . . . "https://www.ebi.ac.uk/chembl/id_lookup/"^^ . "SIGNOR Relation" . . "http://www.geneontology.org/formats/oboInOwl#$1"^^ . . "chemical structure" . "dictybase.gene" . . . . . . . "http://iirds.tekom.de/iirds/domain/software#$1"^^ . . . . . "Maciej.Antczak@cs.put.poznan.pl" . . "rna" . "https://omia.org/variant/omia.variant:$1"^^ . . . "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId="^^ . . "false"^^ . . "false"^^ . . . . . "MicroScope" . "^LDTP\\d+$"^^ . . "SWEET Ontology Representation Data Service Geospatial" . . "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . . "sohuc" . . "It is used to define the topological location (e.g., grid segment, market segment, regulation zone, ...) associated to a Forecast, a Timeseries or a DataPoint. It speciies where a measurement was made, for example a forecast might be valid for a specific region or grid segment."^^ . "ontology" . "http://purl.oclc.org/NET/UNIS/fiware/iot-lite#"^^ . . "true"^^ . . "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1"^^ . "dna" . "protein" . . . . . . . . . "https://w3id.org/digitalconstruction/0.5/Occupancy#"^^ . "Systems, Models, and Simulation Ontology" . "image/movie" . . "Michael Feolo" . "^(\\w+)?\\d+$"^^ . "w3c rec" . . . "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms."^^ . "eccode" . "http://uri.gbv.de/terminology/datacite-descriptiontype/"^^ . "oai:cwi.nl:4725"^^ . . . . "registry" . . . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data."^^ . . . "Property"^^ . . . . "false"^^ . . . . "^\\d+$"^^ . _:N036a74d615bc451196513b2215d43d2c . "https://www.chemspider.com/search?params="^^ . . . "proglyc" . "http://purl.org/nemo/competence#"^^ . "false"^^ . "Over the years, GOV has developed into a tool for genealogists, historians and other researchers that allows uniform access to a wide range of location-related data, especially to information that is important for the work of family researchers.:\n\n- Geographical location of the place (coordinates or display on a map)\n- Various key numbers (zip code, municipality code, etc.)\n- Foreign or historic names\n- Historical affiliation (administrative, ecclesiastical, etc.) based on current affiliations\n\nChurches, church districts, towns, counties, regions, etc. can be found in the GOV. Internally, an entry is generally referred to as a GOV object. [from homepage]"^^ . "http://purl.obolibrary.org/obo/CMO_$1"^^ . "^[a-z0-9-]+$"^^ . "http://purl.obolibrary.org/obo/IOIO_$1"^^ . . "http://sweetontology.net/realmAstroHelio/"^^ . . . . . . . . "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$"^^ . . "nfdi4ing" . . . . . "false"^^ . "^\\d+$"^^ . . "false"^^ . . "https://www.sharkipedia.org/trends/$1"^^ . . "Susanne.Arndt@tib.eu" . . . . . . . "sioc.swan" . "neuromorpho" . . . . "ChEBI" . . . "microRNA Ontology" . . . . . "interaction/pathway" . "FMA_RETIRED" . . . . "http://purl.obolibrary.org/obo/FBbt_$1"^^ . . . "^\\d+$"^^ . "dhowe@zfin.org" . "ontology" . . . . "multimedia" . . "neuroinformatics" . . . "SWEET Ontology Property Count" . . "dashr.rna" . "toni.gabaldon@crg.eu" . "http://dase.cs.ksu.edu/ontology/food-traceability#$1"^^ . . "^ECMDB\\d+$"^^ . . "exac.variant" . "version control" . "ontology" . "Physiologically-Based Pharmacokinetic Ontology" . . "This ontology extension was created to address the following needs:\n\n- The necessity of expressing time-series of data for various tasks and services in InterConnect\n - A workable and unambiguous characterization of quantities, combining units with measurements. This characterization should be technically complete so that quantities cannot be confused during data exchange between unfamiliar services"^^ . . . . "false"^^ . . . "imaging" . . "AB1925000"^^ . . "false"^^ . "materials" . . . . "https://www.ncbi.nlm.nih.gov/nucest/"^^ . . "http://purl.obolibrary.org/obo/EHDAA2_$1"^^ . "ontology" . . "false"^^ . "loc" . "918902"^^ . "Groups listed in GEMET"^^ . . . . . . . . . . "uniprot" . . . . . . . . . . . "Rice Metabolic Pathways" . . "david.gloriam@sund.ku.dk" . "The Comprehensive R Archive Network" . "SABIO-RK Kinetic Record" . . "https://fairsharing.org/users/"^^ . "SEQF1003.1"^^ . "sam.griffiths-jones@manchester.ac.uk" . . "http://pax-db.org/#!protein/$1"^^ . . . . . "http://rdf.geospecies.org/ont/geospecies#"^^ . . "https://www.kazusa.or.jp/huge/gfpage/"^^ . "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry."^^ . "systems biology" . . . "false"^^ . . "false"^^ . . "Physiome Model Repository workspace" . . "repository" . . . . . . . "digitalconstruction.energy" . . . "https://biobanknetwork.telethon.it/Sample/View?sampleId=$1"^^ . . "regulatory region" . "https://gateway.eubopen.org/compound/$1"^^ . . . "false"^^ . "subject agnostic" . . "Process Chemistry Ontology" . . . "Michal Linial" . . . "ideal" . . . "Liz Allen" . "nfdi4chem" . . . "envthes" . "false"^^ . "arrayexpress.platform" . "false"^^ . "HemOnc.org is the largest freely available medical wiki of interventions, regimens, and general information relevant to the fields of hematology and oncology."^^ . . . . . . "ZOBODAT taxon" . "iedb.receptor" . . "microarray assay" . . "Immune Epitope Database Receptors" . "https://amoebadb.org/amoeba/app/record/gene/"^^ . . . "NCBI Genetic Code" . "transcript" . "data retrieval" . . . "false"^^ . "true"^^ . "nfdi4energy" . "http://purl.obolibrary.org/obo/IDOMAL_$1"^^ . . "elm" . . . "OSD-678"^^ . . . "false"^^ . "http://multicellds.org/MultiCellDB/"^^ . . . . . . . . . "false"^^ . "TrichDB" . "plant phenotypes and traits" . . . "false"^^ . . "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation."^^ . "https://www.uniprot.org/keywords/$1"^^ . . . "agriculture" . "Oryzabase Strain" . . . . "^\\d+$"^^ . "Genotype-Tissue Expression" . . . . . . . "ontology/terminology/nomenclature" . "https://www.w3.org/2003/11/swrlx#"^^ . "SWEET Ontology Realm Hydrosphere Body" . . . "phenotype" . . . . . "biomedical science" . . . . "nasaosdr.study" . "ontology" . . "sequence variant" . . . "fair" . "taxonomy" . . . "Maciej Antczak" . "bel" . . . "Li-San Wang" . . . . "http://purl.org/net/orth#$1"^^ . "http://sweetontology.net/phenWave/"^^ . "knowledge representation" . . "protein" . "NIAEST" . "https://bacdive.dsmz.de/strain/"^^ . "MolBase" . . . "Conserved Domain Database" . . . . . . . . . "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1"^^ . "Conrad L Schoch" . "gene" . . "drugs" . . "life science" . "reference genome" . . . . . . . . "SWEET Ontology Phenomena System Complexity" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Sky"^^ . . . "daniel.chivvis@cfa.harvard.edu" . . . . "^\\d+$"^^ . "earth sciences" . "cell types" . . "Geographical Entity Ontology" . . . "exposomics" . "https://www.worldcat.org/oclc/$1"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Materials"^^ . . . "david.wishart@ualberta.ca" . . . "http://purl.obolibrary.org/obo/VBO_"^^ . . . . . . "molmedb" . . "ontology" . . "ess" . . "life science" . "peptide library" . . "^\\d{7}$"^^ . . . . . . "false"^^ . . . . . . "ontology" . "efo" . "https://www.perkinelmer.com/searchresult?searchName="^^ . . "obo" . . . . "saref" . . . "false"^^ . . . "comparative genomics" . . . "fair data spaces" . . "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."^^ . . "true"^^ . . . "http://purl.obolibrary.org/obo/DISDRIV_$1"^^ . . "SGD Helpdesk" . "1859"^^ . . . . . . . . "false"^^ . . "Activity Streams" . . . . "false"^^ . . . "Library of Congress Genre/Form Schemes" . "structure" . "https://w3id.org/idsa/core/"^^ . _:N38e61a9bd71941519f459055f0e43654 . . . . . "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$"^^ . . . "true"^^ . "quality" . "Audubon Core Subtype Controlled Vocabulary" . "food" . "^[A-Za-z-0-9]+$"^^ . . "false"^^ . . . "ontology" . . "Karoline Mauer" . "nucleic acid sequence" . . "OntoSpecies - Chemical Species Ontology for Data Integration and Knowledge Discovery" . . . . . "N0000001662"^^ . "false"^^ . . . "true"^^ . "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion."^^ . . . "A concept scheme that defines the predominate interact mode of the learning resource being described."^^ . . "Allgemeines Metadatenprofil für Bildungsressourcen" . "sophec" . . . "^\\w+$"^^ . . . . "protein" . . "ahol" . . "earth science" . "10034479"^^ . . "86"^^ . . . "sequence" . . . . . "nasc" . . "signor" . "http://purl.obolibrary.org/obo/EMRO_"^^ . . "false"^^ . . "gold.genome" . . . "osti.article" . "drugbank.bioentity" . . . "345201101230312003"^^ . . . . . "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_"^^ . "https://orcid.org/$1"^^ . "ontology" . "ontology" . "^\\d{11}$"^^ . . . . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"^^ . . "sample annotation" . . . "ontology" . . . "false"^^ . "go" . . . . . . "ssn" . "https://oerschema.org/"^^ . . . . . "vendor" . "^\\d+$"^^ . . . "merops.clan" . "K00973"^^ . . . . "ontology" . . "Swiss Personalized Health Network Schema" . . "toxoid" . . "nanostar" . . "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference."^^ . . . "lncbook" . . "https://cropontology.org/rdf/CO_339:"^^ . . "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . "botany" . . "Ontology of RNA Sequencing" . . . . "^\\d+$"^^ . . "digital planning and construction" . . . . . "Yang Chai" . "signor" . "9002859"^^ . . _:N5f980cc182914a41bf9b5ebb2a825349 . "tib.ts" . "RepeatsDB Structure" . . "loc" . "03733596-c643-4c14-a7bc-3048591a3f2d"^^ . . "^\\d{7}$"^^ . . . . . . . "https://depmap.org/portal/cell_line/$1"^^ . . "ontology" . . "mgnifyprotein" . . . . "false"^^ . "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms."^^ . . . . "https://www.echa.europa.eu/information-on-chemicals/ec-inventory/-/dislist/details/"^^ . "EcoPortal" . "BirdBase" . . . "GenInfo Identifier" . . . . . . . "Dublin Core Metadata Initiative Terms" . "https://bioregistry.io/hivreagentprogram:"^^ . . . "protein" . . . . "observations" . "00000014"^^ . . . "311935300"^^ . . . . "ontology" . "ess" . . "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data."^^ . . "Identifiers for missions associated with experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . "http://sweetontology.net/stateRoleBiological/$1"^^ . . . . . . . . "Administrative"^^ . . . "biology" . _:Nd423fb73e2034d1ca45d81f71abf9f6b "adw.staff@umich.edu" . "ontology" . "Sean Taylor" . . _:N681184cd20b44dd1a3e89864e0a6648d "the W3C Schema.org Community Group" . "gene" . "obcs" . . . "false"^^ . "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList"^^ . . "Haruki Nakamura" . . "http://sweetontology.net/realmGeolBasin/$1"^^ . . "genome/gene" . "1784"^^ . . . . . . . "sopropche" . "^\\d+$"^^ . "imsr_em" . . . . "^\\d{7}$"^^ . "false"^^ . . "fair" . . "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."^^ . . . "https://www.ncbi.nlm.nih.gov/gtr/tests/$1"^^ . . . . "genome/gene" . . "registry" . "sorepmo" . . "A repository of software packages written in Rust."^^ . . . "https://graphics.endlessforms.info/library?id=$1"^^ . . . . . _:N3401d916e85d4b69a93bfe639d6c1d65 . "^\\d{7}$"^^ . "CDB-00133756-001"^^ . "odm2.specimentype" . . . "classification" . "https://www.fishbase.ca/summary/$1"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Agriculture"^^ . "New Zealand Threat Classification System" . . . . . "obo" . . . . . . "dgrc" . "Melissa D Clarkson" . . . . "ontology" . "bioinformatics" . "https://id.loc.gov/vocabulary/languages/$1"^^ . . . . . . . . . . "mcmelek@msn.com" . "chemical" . . "ftp://hgdownload.cse.ucsc.edu/goldenPath/$1"^^ . "^\\d{7}$"^^ . . . "COG_Cluster" . _:N749fb74ae1d1472da2e1229f55f3da8b "Michelle Futornick" . . . . . . "JervenBolleman" . "https://www.iedb.org/receptor/"^^ . . . . . . "Conservation"^^ . . . "sweet.repmso" . "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam="^^ . "metabolite" . "^A\\d{4}$"^^ . . . "agricola" . . "glycoepitope" . . . "live mouse" . "ctgov" . . "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1"^^ . . . "http://www.bind.ca/Action?identifier=bindid&idsearch="^^ . "https://bioregistry.io/nsrrc:"^^ . "atmosphere fog" . . "pathogen" . . "biology" . "mauno.vihinen@med.lu.se" . "loc" . . . . . . . . . "VMH Gene" . "Used for recording the techniques, recovery methods and materials associated with the archaeological sciences. English Heritage takes a leading role in setting standards for recording the built and buried heritage. By setting standards that can be adopted by everyone, we can make sure that all records are consistent. In other words, if everyone uses the same words to describe the same monument, archaeological object, building material, etc, then anyone using this common language can easily index, retrieve and understand these records. With this aim in mind, English Heritage is continually developing new thesauri to provide structure and guidelines for the standardisation of terms to be used when creating new records of the past. Now, in our drive to disseminate these standards and promote their wider use, we are making available seven separate online thesauri. A tailor-made suite of programs has been developed, which uses a database to create a series of web pages for any chosen thesaurus. These can be easily accessed using a frames-capable browser and regularly updated as new terms are submitted and approved by our Data Standards Unit.\n\nNational cultural heritage thesauri and vocabularies have acted as standards for use by both national organizations and local authority Historic Environment Records but until now have lacked the persistent Linked Open Data (LOD) URIs that would allow them to act as vocabulary hubs for the Web of Data. The AHRC funded SENESCHAL project aims to make such vocabularies available online as Semantic Web resources. SENESCHAL will start with major vocabularies as exemplars and project partners will continue to make other vocabularies available. Other organizations are welcome to make use of the data and services which will be open licensed.\n\nRESTful web services will be developed for the project to make the vocabulary resources programmatically accessible and searchable. These will include the provision to ‘feed back’ new terms (concepts) suggested by users."^^ . "false"^^ . . . . . . . . "education" . . . "NCBI_GeneID" . . "https://bioregistry.io/resolve/github/pull/$1"^^ . . "PubChem compound" . . . "ICDCM_2005" . . "ontology" . . _:N0d369a61df6c497abdab129b7b06fc2b "Eric Garnier" . "health/disease" . "http://viaf.org/viaf/"^^ . . . . "chemical structure image" . . "Edison Ong" . . "https://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_"^^ . . _:N2fb8a8b6b8e14567b622db85ca1e7989 "Florian Schneider" . . "Golm Metabolome Database Analyte" . "Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease."^^ . . "83088"^^ . "bioresource" . "^\\d{7}$"^^ . . "s4envi" . . . _:Ndc33bf2131bf477ba6cc072415e04761 "tuco@berkeley.edu" . "^[A-Za-z]+$"^^ . "http://bigg.ucsd.edu/models/$1"^^ . "sweet.reas" . "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."^^ . . "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"^^ . . "fcb" . "version"^^ . "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins."^^ . . "The Drug Ontology" . "huch@in.tum.de" . "https://pathbank.org/view/"^^ . . "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . "Kim Dixon Pruitt" . . . . . . "evr" . "false"^^ . "eu.publication" . "https://cellxgene.cziscience.com/e/$1"^^ . "jcggdb" . . . . "transcript" . "false"^^ . . "metabolomics" . "6"^^ . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . . "drug metabolism" . . . "experimental measurement" . . . "human disease model" . . . . "https://vocabularies.cessda.eu/vocabulary/KategorienschemaWahlstudien?lang=en#code_"^^ . "gene functional annotation" . . "sweet.realt" . "martin.wagner@ntnu.no" . . . "false"^^ . . . "http://purl.obolibrary.org/obo/CLYH_"^^ . "biomedical science" . "Network Data Exchange" . "http://purl.obolibrary.org/obo/SYMP_$1"^^ . . . . . . . "digital planning and construction" . "computer science" . . . . . "http://sweetontology.net/stateSpectralLine/"^^ . "DCAT-AP+ is a [LinkML](https://linkml.io/)-based extension of the [DCAT Application Profile 3.0](https://semiceu.github.io/DCAT-AP/releases/3.0.0/) that adds a provenance layer for describing how a dataset was generated and what it is about, using the [Starting Point Terms of PROV-O](https://www.w3.org/TR/prov-o/#description-starting-point-terms), the [QUDT ontology](https://www.qudt.org/), and [Dublin Core Terms](http://purl.org/dc/terms/). DCAT-AP+ is domain-agnostic. It provides a generic set of classes and properties that any domain can import and specialize into its own application profile. [ChemDCAT-AP](https://github.com/nfdi-de/chem-dcat-ap) is the first such domain profile, built for chemistry and catalysis research data."^^ . . "P29894"^^ . . . . "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies."^^ . . . "OrthoDB" . . "cancer" . "proteomics" . "https://www.encodeproject.org/$1"^^ . . . "edam.operation" . . "chromatography" . . . "elements" . . "Saskia Hiltemann" . . . "obo" . "false"^^ . . . . . "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology."^^ . "^ENSGT\\d+$"^^ . "^\\d{4}-\\d+-\\d+-\\d+$"^^ . . "^\\d+$"^^ . "https://www.ebi.ac.uk/interpro/genomeproperties/#"^^ . . . . "achcar11"^^ . . . . "0001021"^^ . . . "^\\d+$"^^ . "http://www.gramene.org/db/ontology/search?id=GRO:"^^ . . . "foaf" . . . . "bioinformatics" . . "^\\d{7}$"^^ . . "noncodev3" . "The upper level ontology upon which OBO Foundry ontologies are built."^^ . . "^S\\w+(\\.)?\\w+(\\.)?$"^^ . "false"^^ . . "O08709"^^ . . . "allergen" . "http://purl.org/cerif/frapo/"^^ . . "false"^^ . "soreaabl" . . . . "saref.maritime" . "false"^^ . "Hadi Quesneville" . . "sweet.stst" . . . . "environmental fate" . "ontology" . . "cdna/est" . . . . . "The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . "Observational Medical Outcomes Partnership" . "polypeptide region" . . . "Julie Thompson" . "^MITE\\d{7}$"^^ . "http://sweetontology.net/phenSolid/"^^ . "compound" . "Physical evidence, usually portable, resulting from past human activity or environmental remains that can be recovered from archaeological fieldwork. English Heritage takes a leading role in setting standards for recording the built and buried heritage. By setting standards that can be adopted by everyone, we can make sure that all records are consistent. In other words, if everyone uses the same words to describe the same monument, archaeological object, building material, etc, then anyone using this common language can easily index, retrieve and understand these records. With this aim in mind, English Heritage is continually developing new thesauri to provide structure and guidelines for the standardisation of terms to be used when creating new records of the past. Now, in our drive to disseminate these standards and promote their wider use, we are making available seven separate online thesauri. A tailor-made suite of programs has been developed, which uses a database to create a series of web pages for any chosen thesaurus. These can be easily accessed using a frames-capable browser and regularly updated as new terms are submitted and approved by our Data Standards Unit.\n\nNational cultural heritage thesauri and vocabularies have acted as standards for use by both national organizations and local authority Historic Environment Records but until now have lacked the persistent Linked Open Data (LOD) URIs that would allow them to act as vocabulary hubs for the Web of Data. The AHRC funded SENESCHAL project aims to make such vocabularies available online as Semantic Web resources. SENESCHAL will start with major vocabularies as exemplars and project partners will continue to make other vocabularies available. Other organizations are welcome to make use of the data and services which will be open licensed.\n\nRESTful web services will be developed for the project to make the vocabulary resources programmatically accessible and searchable. These will include the provision to ‘feed back’ new terms (concepts) suggested by users."^^ . "gateway" . "gene expression" . . "obo" . . "publishing" . . . "ontology" . "genome" . "https://nf.synapse.org/Explore/Tools/DetailsPage?resourceId=$1"^^ . . "open educational resource" . "vbase2" . . . . . . . "The Data Quality Vocabulary (DQV) is seen as an extension to DCAT to cover the quality of the data, how frequently is it updated, whether it accepts user corrections, persistence commitments etc. When used by publishers, this vocabulary will foster trust in the data amongst developers."^^ . "SWEET Ontology Human Technology Readiness" . "https://n2t.net/$1:" . . "obo" . . . . . "disease" . "ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc."^^ . "itis" . . "ontology" . . "localization" . "false"^^ . "skosmos-server" . . . "http://purl.org/spar/deo/$1"^^ . . . "^\\d+$"^^ . . . . . "http://purl.obolibrary.org/obo/FIX_"^^ . "https://mmp.sfb.uit.no/databases/marfun/#/records/"^^ . . . "food" . . . . . . "sweet.reaabl" . "SNOMEDCT_US_2018_09_01" . . . . "BCRC Strain Collection Catalog" . "TAIR Protein" . "realm" . "genetics" . . . . "https://data.oncomx.org/OMX_"^^ . . "0000001"^^ . . . . "https://s3.us-east-2.amazonaws.com/lg.cede/$1"^^ . "sumirp77@gmail.com" . "http://sweetontology.net/reprDataModel/"^^ . . . . . . . . . "http://purl.org/obo/owlEOL_"^^ . . . "pathway" . . "phylogeny" . . . "clao" . "Acceptance"^^ . . "ontology" . "sweet.repmfo" . "obo" . . . . . . . . . "representation mathematics statistics" . . . "The Audience Types Controlled Vocabulary was created for NSF's EarthCube program's Resource Registry. The vocabulary defines the types of audience each resource in the program is targeted to. At this point the vocabulary is very bare - no term definitions even; however, the intention is to extend the vocabulary over time. If you would like to assist with this or in extending any of the other controlled vocabularies/ontologies developed as part of the Resource Registry project, please see https://github.com/earthcubearchitecture-ecresourcereg."^^ . "false"^^ . "sorealo" . . "PDC000351"^^ . . . . . . "database" . "loc.carriers" . "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process."^^ . "obo" . . . . "RDFa Core is a specification for attributes to express structured data in any markup language. The embedded data already available in the markup language (e.g., HTML) can often be reused by the RDFa markup, so that publishers don't need to repeat significant data in the document content. (from https://www.w3.org/TR/rdfa-core/)"^^ . . . . . . . . "openalex" . . . "sequence alignment" . . . . . . . . "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus="^^ . "biomedical science" . . . "odam" . "SWEET Ontology Human Agriculture" . . . . . . . . "^\\d+$"^^ . "chromatin binding" . . "metagenomics" . . . . "structure-based sequence alignment" . . . . "http://sweetontology.net/reprTime/"^^ . "ontology" . . "genome/gene" . "false"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Floor"^^ . . . "worm" . "4DN"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Isotope"^^ . "Federica Quaglia" . "3618"^^ . . "educational resources" . "computational biology" . "fid baudigital" . "trait" . "gene" . . "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . . "Unique Ingredient Identifier" . "cellbank.australia" . . . "ontology" . "AiiClassification"^^ . . "0001003"^^ . "http://vocab.nerc.ac.uk/collection/P06/current/"^^ . "protein" . "carissaroby.bleker@nib.si" . . "https://biopragmatics.github.io/providers/pba/"^^ . . . . . . "^\\w+$"^^ . "sweet.propm" . . . . "data visualization" . "nfdi4ing" . . "ukbiobank" . . . . "life science" . . "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins."^^ . . . . . "resource metadata" . . . . . . "^UPI[A-F0-9]{10}$"^^ . . . . . . "false"^^ . . . _:N1c2db4e208e2452da6db4852d6e9c7f5 "Radiological Society of North America" . . . "mass spectrum" . "Pieter Mestdagh" . . . . . . . "classification" . . . . "https://proteininformationresource.org/cgi-bin/resid?id=$1"^^ . . . . . "Wikidata Property" . . "UMR7315"^^ . "grassbase" . "mechanical engineering, energy technology" . . . . . "sdy998"^^ . . . "false"^^ . . "ribosome profiling" . "http://purl.obolibrary.org/obo/OGI_$1"^^ . . . "ontology" . "^HIT\\d{9}(\\.\\d+)?$"^^ . . . "ontology" . . "97712"^^ . "false"^^ . . . "Darwin Core Terms" . "3567"^^ . . . . "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol="^^ . . . . "The Virus Infectious Disease Ontology (VIDO) is an extension of the Infectious Disease Ontology (IDO). VIDO follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by specific viruses and associated virus diseases. Other terms are defined as cross-products of terms from Foundry ontologies to the extent possible."^^ . . "International Genome Sample Resource" . "https://molmedb.upol.cz/mol/"^^ . . . . . . . "https://ontome.net/ontology/"^^ . "sequence cluster" . . "expression" . . "An ontology of core ecological entities" . . . "SWEET Ontology Property Diffusivity" . . . "genome" . . . . "http://sweetontology.net/propDifference/"^^ . . . "expression" . . "false"^^ . . . . "reaction data" . . . . . "http://polytraits.lifewatchgreece.eu/traitspublic_traitdefinitions.php#"^^ . . "HMS Library of Integrated Network-based Cellular Signatures Antibodies" . . "19757"^^ . "Duration"^^ . . . . . . . . "a.kranz@fz-juelich.de" . . . . . . "^OS-\\d+$"^^ . "economics" . "nfdixcs" . . "atomistic" . "^\\d{7}$"^^ . "false"^^ . . "interaction" . "interaction" . . _:Nfe3372ba42eb4a07920a86c03bd62252 "sparontologies@gmail.com" . "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease."^^ . "UR000124451"^^ . . "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities."^^ . . . . . . "snp" . . . "http://sweetontology.net/phenHelio/"^^ . . "d4e2515"^^ . . "https://vocabularies.cessda.eu/vocabulary/Variables-Relations?lang=en#code_"^^ . "loqate" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Servcie Analysis"^^ . . . "rapdb.locus" . "1-FEH+w3"^^ . . . "expression data" . . "UniCarb-DB" . "0000044"^^ . . _:N2002a09eb33448d0813470f2c42afd59 . . . . . "https://database.factgrid.de/entity/$1"^^ . . . . . . . . . . "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1"^^ . . . "chembiosys" . . . . . . . "^\\d+\\-\\d+\\-\\d+$"^^ . "seed.reaction" . "organizations" . . "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id="^^ . "Anatomical Entity Ontology" . . "The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project."^^ . . . . . "^[8-9]\\d{3}(/[0-3])?$"^^ . . . . . . "obo" . . . . "structure" . . . . "https://reporter.nih.gov/project-details/"^^ . "http://rebase.neb.com/rebase/enz/$1.html"^^ . "http://modelseed.org/biochem/reactions/$1"^^ . . "https://easychair.org/cfp/"^^ . . . "gas chromatography" . "Open Data Commons for Spinal Cord Injury" . "genome/gene" . "http://www.xmetdb.org/xmetdb/protocol/"^^ . . "ontology" . . . "hyou@sjtu.edu.cn" . "https://hdl.handle.net/hdl:20.500.12633/$1"^^ . "events" . . . . . . . "Microarray experimental conditions" . "false"^^ . "coypu" . . . "bfo" . "https://cropontology.org/rdf/CO_357:$1"^^ . "clinical studies" . . . . "genomics" . . . "Numeric Type" . . . "^[A-Za-z0-9\\-\\_]+$"^^ . . . "http://iflastandards.info/ns/fr/frbr/frbrer/"^^ . . "1250"^^ . . "curated information" . "http://id.loc.gov/vocabulary/$1"^^ . . "work" . "deims.id" . "tib.mdo" . . . . . "reaction data" . . . . . "https://w3id.org/dot#$1"^^ . "covid-19" . "genomics" . "itmctr" . "false"^^ . . "mirna" . . "Berkeley Drosophila Genome Project EST database" . . "^CA\\d+$"^^ . . "obo" . "gene" . . "https://saref.etsi.org/saref4auto/"^^ . "state time geologic" . . "regulation" . . . . . "^\\w+$"^^ . . . . "mass" . . . . "http://terminologies.gfbio.org/terms/KINGDOM/$1"^^ . . . . "false"^^ . "ontology" . "cancer" . "https://www.ebi.ac.uk/complexportal/complex/$1"^^ . "^\\d+$"^^ . . . "https://cropontology.org/rdf/CO_334:$1"^^ . "ardan@ebi.ac.uk" . . . . "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data."^^ . "false"^^ . . "SWEET Ontology Material Particle" . "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation."^^ . "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc="^^ . "http://edamontology.org/operation_$1"^^ . . "The JEL Classification Codes Guide is now available online. Additionally, you may download an xml file of JEL Codes. JEL Codes are 3-digit, but EconLit searches require the use the four digit codes consisting of the 3-digit JEL code plus a 0. The EconLit subject descriptors are the same as the Journal of Economic Literature (JEL) classification codes."^^ . "Taxonomy of Digital Research Activities in the Humanities" . . . . "Commonality Type" . . . . . . "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature="^^ . . . . . . . . "animal" . . "false"^^ . "curated information" . "This ontology is for use in describing Workspaces. Workspaces are places where data is stored and associated policies of privacy. A given application typically stores information in several different workspaces, some being user private, some shared, and some public. it is crucial that the user has easy control over the destiny of information."^^ . . . . . "Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management."^^ . "https://w3id.org/geochem/1.0/analyticalmethod/$1"^^ . "khamar.he@northeastern.edu" . . . "The LifeWatch Metadata Catalogues plays a crucial role in managing metadata for digital objects, including Datasets, Services, Workflows and Virtual Research Environments. This catalogue serves as the central repository, ensuring that resources are accessible and reusable by stakeholders."^^ . . . . . "https://www.iana.org/assignments/media-types/"^^ . . . "http://www.p3db.org/phosphosite.php?id=$1&ref=0"^^ . . "systems biology" . "mgriffit@wustl.edu" . . "http://www.w3id.org/Concept/Ontology/COnDO#"^^ . . "sweet.phsy" . . . . "Ontology of Arthropod Circulatory Systems" . "nucleotide" . . . . "https://cropontology.org/rdf/CO_347:$1"^^ . "http://sweetontology.net/reprDataProduct/$1"^^ . "PrefixOrTermMapping"^^ . . "https://vocabularies.cessda.eu/vocabulary/TypeOfConceptGroup?lang=en#code_"^^ . "64ba"^^ . . . . . . "false"^^ . "false"^^ . . "SABIO-RK" . . . "dorloff@ncmir.ucsd.edu" . "http://sweetontology.net/matrSediment/"^^ . "http://data.europa.eu/snb/dcf/"^^ . "^.+$"^^ . . "Jose P. Faria" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System Complexity"^^ . . "coypu.gta" . . . "http://sweetontology.net/propBinary/$1"^^ . . "The User Interface ontology allows the definition of forms for processing RDF model data, and include a bootstrap form for editing forms. It allows user interface hints such as background colors, can be associated with objects and classes."^^ . . . . "biomedical science" . "^rxn\\d+$"^^ . "maria.gould@ucop.edu" . "health/disease" . "MGnify Protein" . "nfdi4ing" . . "An ontology designed to support the semantic annotation of epidemiology resources"^^ . "nucleotide" . . . "https://si-digital-framework.org/kcdb-sc/$1"^^ . . . . "https://www.antibodypedia.com/gene/"^^ . "foundational ontologies" . . . . . "ismail.fliss@fsaa.ulaval.ca" . . "1-55516888-G-GA"^^ . . . "sequence" . "https://vegbank.org/cite/$1"^^ . . . "pubchem" . "bioresource" . "https://catalog.integbio.jp/dbcatalog/en/record/$1" . . "health/disease" . . "false"^^ . . . "false"^^ . "nfdi4ing" . . "OBO Foundry" . "false"^^ . "^\\d{7}$"^^ . . . "did" . . . . . "^[0-9]+$"^^ . . . . "http://aps.unmc.edu/AP/database/query_output.php?ID="^^ . "051"^^ . . . "Rahuman Sheriff" . . "This is the computational workflow module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . "security" . . "MMSL_CODE" . "ontology" . . . "https://biobank.ndph.ox.ac.uk/crystal/field.cgi?id="^^ . . "An organization in FAIRsharing, including universities, labs, etc."^^ . . . "sophpc" . . . "glycosylation" . "false"^^ . . "open educational resources" . . . "eggnog" . . "sm_fathalla@yahoo.com" . "http://purl.obolibrary.org/obo/SCDO_"^^ . . . . . "protein" . . . . . "NPA000001"^^ . "http://sweetontology.net/realmLandAeolian/"^^ . "Extension of the Ontology of Units of Measure (OM) with common units used in the Interconnect project"^^ . "chemistry" . . . "Types used in WikiPathways RDF"^^ . "https://terminology.tib.eu" . "http://purl.obolibrary.org/obo/LFID_"^^ . . . . . . . "nfdi4chem" . "William R. Sellers" . . . "wiktionary" . . . "anatomy" . "eclas" . "yuki.yamagata@riken.jp" . "annotation" . "false"^^ . . "GR_QTL" . "molecule" . "http://purl.org/phylo/treebase/phylows/study/$1?format=html"^^ . "false"^^ . . . . "genome/gene" . . . "true"^^ . . "^\\d{7}$"^^ . "Identifier for a journal article in the fossilworks website"^^ . "UniParc" . . . . . "environment" . . "^[0-9a-f\\-]+$"^^ . "The European Skills, Competences, Qualifications and Occupations (ESCO) International Standard Classification of Occupations (ISCO)."^^ . "Data Object Service" . . . "nif" . . "https://bioinfo.cristal.univ-lille.fr/norine/result.jsp?ID="^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1"^^ . . "somaoc" . . . . . . "true"^^ . . . "chr"^^ . . . . . "pathway" . "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology"^^ . . . "Joshua Klein" . "zhenyang@fudan.edu.cn" . "obo" . . "subject agnostic" . . . "biomedical science" . "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1"^^ . . . "short linear motif (slim)" . . . . "http://sweetontology.net/stateSpectralLine/$1"^^ . "^\\d{16}$"^^ . "Selventa Diseases" . . "http://purl.org/dcx/lrmi-vocabs/alignmentType/$1"^^ . . "transcriptomics" . . . "SNOMEDCT_US_2021_09_01" . . "https://cryptodb.org/cryptodb/app/record/gene/$1"^^ . . . "Fossilworks Journal" . "AllSomeInterpretation"^^ . "social science" . . "The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for individual biosynthetic gene clusters (BGCs) linked to their corresponding bacterial or archaeal source."^^ . "^HMDB\\d+$"^^ . . "Integbio Database Catalog provides whereabouts information (URL), database description, biological species and other attributes (metadata) of Japanese and international life science databases to make it easier for users to find databases they need. This catalog has been developed as a part of the integration of life science databases promoted by four ministries in Japan: the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor, and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF), and the Ministry of Economy, Trade, and Industry of Japan (METI). (from https://integbio.jp/dbcatalog/en/about)"^^ . "^\\d+$"^^ . . . "binding affinity" . . . . . . . "protein" . "http://dictybase.org/gene/"^^ . . . "EDCC Taxonomy" . "snp" . . "African Population Ontology" . . "Ryuichiro Nakato" . "false"^^ . . . . "Physiome Model Repository" . "Shur-Jen Wang" . . "ontology" . "biomedical science" . "genome/gene" . "marine ecology" . . . "false"^^ . "tib.linsearch" . . . "Identifiers for biospecimens used in experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . "^\\d+$"^^ . . "digital pathology" . "false"^^ . . . . . . . . . "http://phylomedb.org/?seqid="^^ . "BioTop" . . "cell" . "Environmental conditions, treatments and exposures ontology" . "http://purl.obolibrary.org/obo/DRON_$1"^^ . . . "lifengcheng@zju.edu.cn" . "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?(-\\d+)?(#PRO_\\d+)?$"^^ . "tcb" . . "chemical compound" . . . . . "https://app.knetminer.com/genepage/$1"^^ . . "organism-specific databases" . "false"^^ . . . . . "International Standard for Intelligent Information Request and Delivery Software Ontology" . . . "false"^^ . . . "http://purl.obolibrary.org/obo/CIDO_"^^ . "false"^^ . . . "0000773"^^ . "rdf" . . "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names."^^ . "nfdi4ing" . . "protein" . . "false"^^ . "dqv" . . . "https://w3id.org/class/sectors/"^^ . "74ed2670_657d_4f0b_b0a6_3f13bc2e9c17"^^ . . "transportation planning" . . . . "zaking@ucsd.edu" . . . "bibliography/documents" . . . "education level" . . "chromosome" . . "pathway" . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Glacial"^^ . . . "The AHOL ontology (Animal Health Ontology for Livestock) was built collaboratively within a network of experts in the livestock health field, in order to describe production diseases. Its structure is based on the type of disease: communicable, non communicable, genetic, metabolic, physical or psychological. The properties of each disease are related to associated symptoms (the expression of a phenotypical character), the affected organism (livestock, poultry, mammals, fishes) or the one causing the disease (virus, bacteria, fungus, parasite)."^^ . . "MNXR101574"^^ . "false"^^ . "https://smc.jgi.doe.gov/sources/"^^ . . "http://sweetontology.net/phenElecMag/$1"^^ . "100Cr6"^^ . . . . . . . . . "Human Unidentified Gene-Encoded" . "https://ieeexplore.ieee.org/document/"^^ . . . "H-InvDb Transcript" . . "ontology" . . . . . "study design" . "false"^^ . . . . . "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."^^ . . . . . . . "sweet.repscd" . "One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes."^^ . . . . "itiswebmaster@itis.gov" . . . . "COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a \"flat\" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."^^ . "Collections of images, based on topics, such as the human skull collection"^^ . . "http://purl.obolibrary.org/obo/YPO_$1"^^ . "^LDCM\\d+$"^^ . . "false"^^ . . . . . . "The SAGE Social Science Thesaurus is a multidisciplinary vocabulary of the most important concepts in the social sciences. SAGE uses this vocabulary as its principal keyword vocabulary for automated tagging of content on SAGE Knowledge and SAGE Research Methods. You are welcome to browse, download, use and transform the vocabulary for any non-commercial purpose.\n\nThe majority of concepts in the thesaurus have been mined from headwords in SAGE encyclopedias and other reference works. Relationships between concepts have been inferred from implicit structures in those works, for example subject indexes and readers' guides. As such, the thesaurus is a structured representation of what the editors of those reference works consider to be the most important concepts in the social sciences.\n\nAdditional scraping work has extracted and structured concept-specific metadata, such as dates (for events and people) and definitions. In addition to broader-narrower relationships, concepts are grouped by type: concepts, people, organizations, events, methods, theories or laws."^^ . "https://redoxibase.toulouse.inrae.fr/display_perox/view_perox/$1"^^ . "NONCODE v4 Gene" . . . . . "HPSI0114i-bezi_1"^^ . "w3c rec" . "electronic health record" . "saref.auto" . . . . "craniofacial phenotype" . "materials" . "https://www.kazusa.or.jp/rouge/gfpage/"^^ . . "adjacentTo"^^ . . "false"^^ . . . "SP_SL" . . "Blue Brain Project's published data as knowledge graphs and Web Studios."^^ . . . . . . . . . . "true"^^ . "^[1-9]\\d*$"^^ . "false"^^ . . "https://oprlm.org/proteins/$1"^^ . . . . "sequence motif" . . "developmental biology" . "BIOMD" . "false"^^ . . . . . . "http://www.w3.org/2006/vcard/ns#$1"^^ . "data management" . . . "false"^^ . . . "false"^^ . "The S/MAR transaction DataBase" . . . "physics" . "ddi.languageproficiency" . "quality" . "The INSPIRE theme register contains all spatial data themes, as defined in the Annexes of the INSPIRE Directive ( Directive 2007/2/EC of the European Parliament and of the Council of 14 March 2007 establishing an Infrastructure for Spatial Information in the European Community (INSPIRE)). The descriptions of the themes are based on version 3.0 of the \"Definition of Annex Themes and Scope (D 2.3)\" by the data specifications drafting team and subsequent updates by the INSPIRE Thematic Working Groups (TWGs). (from homepage)"^^ . "Name Reaction Ontology" . . . "Molecular Signatures Database" . . "chemont" . . "gene" . . . . "^\\d+$"^^ . . . . "https://doi.org/10.29172/$1"^^ . "conferences" . . "loc.millus" . . "environmental science" . . "false"^^ . "The NFDI4DataScience ontology (nfdi4dso) is an ontology describing various resources all resources (datasets, data providers, persons, projects and other entities) within the domain of NFDI4DataScience. nfdi4dso is a module that builds upon the [NFDIcore Ontology](https://ise-fizkarlsruhe.github.io/nfdicore/2.0.0/) and maintains alignment with the Basic Formal Ontology (BFO). [adapted from homepage]"^^ . "98346"^^ . . . "organism-specific databases" . "sopropsp" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Feature"^^ . "stefan.schulz@medunigraz.at" . "https://bioregistry.io/lipidbank:"^^ . "^\\d+$"^^ . . "chemistry" . "https://prefix.zazuko.com/$1:$2" . . . "sequence" . . . . . "molecular biology" . "dna sequence" . "obo" . "sopropq" . "marine biology" . "An investigation in the ChemBioSys data platform"^^ . . "ontology" . . "swisslipid" . . "http://purl.obolibrary.org/obo/ECAO_$1"^^ . "life science" . "ontology" . . . "morphology" . . "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1"^^ . "Integrated Resource for Domestic Dog" . . . "Andrea Perego" . . . "biomedical science" . . . . "Global Biodata Coalition - Global Core Biodata Resources" . . "true"^^ . . . . "molecules" . "genomics" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process State Change"^^ . . . "v001"^^ . . "0000029"^^ . . "degraders" . . . "genome/gene" . . "Barrier"^^ . "identifier of a compound in the UniChem database"^^ . "^Os\\d{2}t\\d{7}-\\d{2}$"^^ . "gndo" . . "ontology" . "fair data spaces" . "ontology" . . "cell/organelle" . . "SCTID_2010_1_31" . . . . "The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web."^^ . "GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio."^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Quantity"^^ . . "http://sweetontology.net/stateTimeFrequency/$1"^^ . . . "https://www.addexbio.com/productdetail?pid=$1"^^ . . . "EHDAA2_RETIRED" . . . "bacmap.map" . "sediment" . . . "nsrrc" . "The Ocean Information Model (OIM) is the common vocabulary in ILIAD project providing the basis for semantic interoperability across smart ocean solutions., The ILIAD Ocean profile is a master profile importing all modules of ILIAD OIM"^^ . . . "transcription factor binding site prediction" . . "SNP500Cancer" . "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1"^^ . "CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making."^^ . "https://cropontology.org/rdf/CO_345:$1"^^ . . . "0000048"^^ . . . . . "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1"^^ . . . . . "TIGR00010"^^ . "sweet.stef" . "Life cycle stages for Medaka"^^ . "126"^^ . . . . "cellrepo" . . . "Shapes Constraint Language" . . . "https://deims.org/dataset/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Geospatial"^^ . . . . "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . "^[A-Za-z_0-9]*$"^^ . . . . "http://aber-owl.net/ontology/$1/#/Browse/" . . "Cellosaurus Publication" . . "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies."^^ . . . . "http://sweetontology.net/propRotation/"^^ . "The Building Topology Ontology (BOT) is a minimal ontology for describing the core topological concepts of a building."^^ . . . "^\\d+$"^^ . . . . . . . . . "hoelzel" . "595"^^ . "stn" . . . . "false"^^ . . . . . . . "genome" . "Lightweight Information Describing Objects" . . . "University hospital Medical Information Network Clinical Trial Registry" . . "https://id.loc.gov/resources/"^^ . . "iobc" . "Atsushi Yoshiki" . . "Version 0.4 to 1.0 fixed reversed dsw:locates and dsw:locatedAt. Added labels. Changed comments and descriptions to conform to DC and DwC precedent. Added subClassOf relations to RO hasEvidence and isEvidenceFor. Specified preferred direction for inverse object property pairs., Changes from version 0.2.1 to version 0.3: removal of all functional and inverse function properties of object property terms, use of dwctype classes, deprecation of terms replaced by dwciri: terms, removal of references to TDWG Ontology., Changes from version 0.3 to 0.4 change DwC class namespace from dwctype: to dwc: to follow class proposal, removed references to TDWG TaxonConcept ontology; deprecated terms that now have equivalent terms in Darwin Core., Change from version 1.0 to 1.0.1 Add CC0 license."^^ . . . . . "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1"^^ . . "environmental science" . . . . . . "false"^^ . . "pancreatic development" . "3792"^^ . "^\\d+$"^^ . . "^\\w+$"^^ . "ksdrew@uic.edu" . . . "https://cordis.europa.eu/article/id/$1"^^ . . . "epidemiology" . . "ecyano" . "119514"^^ . . . . . . "http://purl.obolibrary.org/obo/ICO_"^^ . "https://query.biodeep.cn/metabolite/$1"^^ . "http://www.ebi.ac.uk/cmpo/CMPO_"^^ . "regulation of gene expression" . "fish.mt" . . . . "sequence" . "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions."^^ . "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1"^^ . . . "miriam" . "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data."^^ . "orthodb" . "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature."^^ . "Franziska B. Grieder" . . "SWEET Ontology Property Time" . . . . "cessda" . "protein" . "tissue" . . . . "Atom Syndication Format" . . . "^\\d{7}$"^^ . . _:N9cee0ca52bc5483781fac86bf2192e7d "NLM Customer Service" . . "sweet.strb" . "SWEET Ontology Human Knowledge Domain" . "chemfont" . . "Modular Ontology Modeling for Food Supply Chains" . "Immune Epitope Database MHC Restrictions" . "cristhian.paredes@bipm.org" . . "This is the dataset module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . "ontology" . "grddl" . "System capabilities, operating ranges, and survival ranges ontology" . . . "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1"^^ . "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments."^^ . "The 'Energy Market Roles' ontology module represents the energy market roles of energy agents. Additionally, it includes the consumer role, as it is reused in most of Smart Grid scenarios. This ontology module reuses the knowledge of the 'Actor' ontology module."^^ . . . "http://www.w3.org/ns/solid/terms#"^^ . . "publishing" . "anatomy" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass"^^ . "sweet.phatmopc" . "https://easychair.org/cfp/topic.cgi?tid=$1"^^ . . "Core Ontology for Robotics and Automation" . . "0000004"^^ . . "ontology" . . "EDI_244000"^^ . "https://vcell.org/biomodel-$1"^^ . "0000000"^^ . . . . . "http://www.opengis.net/ont/geosparql#"^^ . "sequence" . . . "Jacqueline.Campbell@usda.gov" . . "knowledge graph" . . . . "An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity."^^ . "transcriptomics" . "SWEET Ontology Material Ion" . . "protein interactions" . . . . . . . "ontology" . . . . "https://bionumbers.hms.harvard.edu/bionumber.aspx?id="^^ . "dlxb" . . "https://w3id.org/listdb/onto#"^^ . . . "https://www.rhea-db.org/rhea/"^^ . "chemistry" . . . . . . "PID4NFDI Providers" . "gene" . "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_"^^ . "sweet.reag" . . "Asteraceae Genome Database - Genome" . "nfdi4ing" . . "^[a-zA-Z0-9-]+$"^^ . "health/disease" . . "earth sciences" . . . "Conductance"^^ . . . _:Nd0a43519a8684adbbcfa3dd7b8a92e6d . "http://purl.obolibrary.org/obo/XCO_$1"^^ . . . "sopropi" . "domain" . . "SCC111"^^ . "chip-seq assay" . . . "0000000"^^ . . . "http://purl.org/spar/c4o/$1"^^ . . . . . "hom" . . "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms."^^ . . . . . . "SABIO-RK EC Record" . _:N960db52653f14276bf475402b8a66a0f "UNESCO" . . . "http://purl.obolibrary.org/obo/MI_$1"^^ . "hgnc.genefamily" . . . . "3d structure databases" . . "http://www.conoserver.org/?page=card&table=protein&id="^^ . . . . "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid="^^ . "sequence feature" . . . . . "MoNA spectrum" . . "patent" . "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1"^^ . . "timrobertson100@gmail.com" . . . "sweet.repsd" . "http://digicult.vocnet.org/sachgruppe/"^^ . . . . "ascl" . . . "https://portal.mardi4nfdi.de/entity/$1"^^ . "false"^^ . . "zfin" . "01406"^^ . "The UNESCO Thesaurus is a controlled and structured list of terms used in subject analysis and retrieval of documents and publications in the fields of education, culture, natural sciences, social and human sciences, communication and information. Continuously enriched and updated, its multidisciplinary terminology reflects the evolution of UNESCO's programmes and activities. [from homepage]"^^ . "life science" . . . "^\\d+$"^^ . . "w3c rec" . "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms."^^ . . "chembiosys.model" . . "Consensus CDS" . "NeuroVault Collection" . . "Defunct vaccine information source from the He Lab"^^ . . . . "protein complex" . . . . . . "cell" . "mathematics" . . "protein localization" . "agriculture" . "code for a region per NUTS (Nomenclature des unités territoriales statistiques), a geocode standard for referencing the administrative divisions of countries for statistical purposes"^^ . . "obo" . "http://www.onto-med.de/ontologies/gfo.owl#$1"^^ . . . "chemical" . . . "mirbase" . . "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates."^^ . . . "http://edamontology.org/data_$1"^^ . . "http://www.w3.org/2003/12/exif/ns#"^^ . . . "SWEET Ontology Relationships Chemical" . "Food Type identifiers, supporting codes and vocabularies based on the EFSA FoodEx2 (https://www.efsa.europa.eu/en/data/data-standardisation) that are being tested in the development of the FSA's code and data standards repository. These codes may be used within FSA data."^^ . . . "c"^^ . "An core data schema for the mart Connected Supplier Network (SCSN)."^^ . "false"^^ . . . . . . . . . . "http://www.pharmgkb.org/drug/"^^ . "http://geneontology.org/" . . . . . "cell_model_passport" . "EG10173"^^ . . . "pathway" . . . . . "1"^^ . "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID="^^ . . "cog.cluster" . . "fma" . . "^IPR\\d{6}$"^^ . . "Maxwell L. Neal" . "http://purl.obolibrary.org/obo/MOD_$1"^^ . "life science" . "MobiVoc is an open vocabulary for future-oriented mobility solutions."^^ . . "drug interaction" . "http://synbip.idrblab.net/data/sbp/details/$1"^^ . "false"^^ . "https://eol.org/pages/$1"^^ . . . . . . . "snp" . . "epidemiology" . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene."^^ . . "http://purl.obolibrary.org/obo/FIDEO_$1"^^ . . . . "database management" . "ms" . . "molecular interaction" . "https://bioregistry.io/phosphopoint.kinase:"^^ . "TripleExpression"^^ . . . "true"^^ . "E-MTAB-2037"^^ . . "s1000"^^ . "false"^^ . "ontology" . "immunology" . . . . . . "10531"^^ . . "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . . "Tarcisio Mendes de Farias" . . . "United States Department of Agriculture Veterinary Biological Product Code Number" . . . "experimental measurement" . . . . . . "false"^^ . . "materials science" . "structure" . . "lincs" . . . "crop2ml" . . . "300011154"^^ . . . . "https://icd.who.int/browse/latest-release/foundation/en#"^^ . . . "obo" . . . . . . . . . . . "yocto"^^ . . "https://w3id.org/kim/isced-1997/level"^^ . . . . "hannele.laivuori@helsinki.fi" . "false"^^ . . . . . . . . . . . . . . "genome/gene" . "false"^^ . "https://ensaiosclinicos.gov.br/rg/"^^ . . . . "Maxat Kulmanov" . . "natural language processing" . . . "m.naguthana@hotmail.com" . _:Na43d7462946a49f2b80a933ab36c1e8e "Dongsheng Cao" . . . . . . "protein" . . "obo" . "false"^^ . . "phenotype" . . . . "ILC4CLARIN" . . "repository" . "COG0001"^^ . "http://sweetontology.net/procWave/"^^ . . . "noaa.species" . "ontology" . "https://omabrowser.org/oma/vps/"^^ . "agriculture" . . . . . "P-008-GD6"^^ . "biolink" . . . . "false"^^ . "ontology" . . . "sweet.maw" . . . "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1"^^ . . . "Ulrike Wittig" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation"^^ . "disdriv" . . . . "Fungal gross anatomy" . . "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research."^^ . "pathway" . "genetics" . "Renato Iannella" . . "neurovault.image" . "alan.bridge@isb-sib.ch" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Physical"^^ . . "protein" . "false"^^ . "https://w3id.org/sstim/vocab#$1"^^ . "sequence" . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Hydrosphere"^^ . "Jonatan Jalle Steller" . "0000404"^^ . . "obo" . "false"^^ . . "bibliography/documents" . . . . . . . "drugbank.salt" . "sweet.propr" . . "method" . "false"^^ . "MGYS00006794"^^ . "QJ51RV02"^^ . "C. elegans development ontology" . . . . "covid19" . "GARD" . "arXiv" . "small molecule" . "^.{2,}$"^^ . "disease" . "protein interactions" . "Toby J Gibson" . . "http://id.loc.gov/vocabulary/subjectSchemes/$1"^^ . . "host" . . . . . . "raghava@iiitd.ac.in" . . . "ontology" . . "A user in DockerHub"^^ . . "life sciences" . . . . "regulation" . . "sweet.phatmofo" . . . . "ontology" . "enrique.blanco@crg.eu" . "drug" . . "https://bioregistry.io/clingen.affiliation:"^^ . "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID="^^ . . . "Identifiers correspond to curated molecular glue compounds with chemical structures and physicochemical properties in the MGTbind database."^^ . . "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions." . "https://datu.ehess.fr/"^^ . "MagnitudeValueType"^^ . "https://browser.planteome.org/amigo/term/PECO:"^^ . . . . "latitude"^^ . . . "CustomsUnion"^^ . . . . . "Identifies the type of aggregation used to combine related categories, usually within a common branch of a hierarchy, to provide information at a broader level than the level at which detailed observations are taken. (From: The OECD Glossary of Statistical Terms)"^^ . "SWEET Ontology Realm Land Aeolian" . . "https://www.rebuildingakidney.org/id/"^^ . "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database."^^ . . . . . "http://sweetontology.net/phenGeolTectonic/"^^ . . "organism" . . "Vertebrate Breed Ontology Issue Tracker" . "metabolomics" . . . "false"^^ . . . . . . . "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents."^^ . _:N609fca27563d4b64a8d441bc8bdd6837 . . "Merck Millipore (EMD Millipore)" . "0000000"^^ . . "pathway" . . . "centrally registered identifier" . . "Symposium"^^ . "literature curation" . . "http://vocab.getty.edu/page/cona/$1"^^ . . . . . "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." . . "carbohydrate" . . . . "http://www.cathdb.info/cathnode/$1"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind Mesoscale"^^ . "glycomics" . "protein domain" . . . . . . . . . "ontology/terminology/nomenclature" . "regulation of gene expression" . "The Extensible Observation Ontology (OBOE) is a formal ontology for capturing the semantics of scientific observation and measurement. The ontology supports researchers to add detailed semantic annotations to scientific data, thereby clarifying the inherent meaning of scientific observations."^^ . . . "AirSpace"^^ . "gene" . . "epigenetics" . "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders"^^ . "bibliography/documents" . . "http://uri.neuinfo.org/nif/nifstd/nlx_br_"^^ . . "somaf" . . "false"^^ . "Financial Industry Business Ontology" . . "^\\d{7}$"^^ . _:Nb40d9510788a406ba8e3cf0e638844fa "icd@who.int" . . . . "NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999)."^^ . "Reaxys" . . "psi-mi" . . . . . . "^\\w+$"^^ . "046"^^ . "peff" . . . "Darwin Core pathway controlled vocabulary" . "Identifiers.org" . . . . "log" . . . . "Jaime Huerta-Cepas" . . "Rice Ontology" . "ddi" . "false"^^ . . . "genomics" . . . "iofcore" . "experimental tools" . . . . . . . . "structure" . "The Banana Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . . "state system" . . "gold" . "An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF."^^ . "Medical Action Ontology" . . "Rossana Paciello" . . . . "structure" . . "immunology" . . "983"^^ . . "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#"^^ . "OENC205"^^ . . . . "https://ligandbook.org/package/"^^ . "Nicolas Matentzoglu" . "Functional Genome Annotations with Transcriptional Activities" . . "uniprot.core" . "This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes."^^ . "https://repo.napdi.org/study/"^^ . "repository" . . . . . "http://purl.obolibrary.org/obo/CIO_"^^ . . . "genotype" . "https://sed-ml.org/urns.html#language:"^^ . . . . . . . "Genderal Ontology for Linguistic Description" . "ontology" . . . . "Docker repository hosted on Docker Hub"^^ . . "disprot" . . . . . . . "CohesinDB - cohesin site" . "Allotrope Merged Ontology Suite"^^ . . . . "DarwinPoint"^^ . . "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects."^^ . . "https://rubygems.org/gems/"^^ . . "Genomic Data Commons Data Portal" . . "GeneCards Gene" . . . "clinvar.variation" . "protein" . . . . "ontology" . "http://purl.obolibrary.org/obo/TO_$1"^^ . . . "curated information" . . . "small molecule" . . . "The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another."^^ . "structural biology" . "false"^^ . . "https://www.flymine.org/flymine/report/ChromosomeBand/"^^ . . . . "false"^^ . . . "sciflection" . . . "https://bioregistry.io/cst.pathway:"^^ . "false"^^ . "protein" . . . . "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode."^^ . . . . . "The State of Alaska's Salmon and People Ontology" . "SR0000178"^^ . . . . . . "https://eol.org/pages/"^^ . . . "false"^^ . . . . . "http://vocab.nerc.ac.uk/collection/P07/current/"^^ . . "state" . . . "rwinslow@jhu.edu" . "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1"^^ . . "false"^^ . "life science" . "skos.xl" . "KEGG Environ" . "false"^^ . . . "event" . . "umls.cui" . . . . "small molecule" . . . . . . . . "obo" . . "^\\d+$"^^ . "FAIRsharing Organization" . . "http://www.w3.org/2006/time#$1"^^ . "https://vocabularies.cessda.eu/vocabulary/KategorienschemaWahlstudien?lang=en#code_$1"^^ . "DigitalArtifact"^^ . . . "genbase" . . "genome" . . "http://www.bigdatau.org/schema#"^^ . . . . . . . "bb0754dd-7e69-4b29-b348-3f8017f73d6b"^^ . "secondary_attack_rate"^^ . . . . "The ontology of the taxonomy \"European Skills, Competences, qualifications and Occupations\". The ontology considers three ESCO pillars (or taxonomy) and 2 registers. The three pillars are: 1) Occupation, 2) Skill (and competences), and 3) Qualification"^^ . "http://www.scancerrna.com/toDetail?id="^^ . "http://sweetontology.net/phenEnvirImpact/$1"^^ . . . . "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"^^ . _:N9d4198e6f54a40ebbe2e2a62b43e8032 "info@who.int" . . . . . "Silvio C.E. Tosatto" . . . . . . "ontology" . . "^\\d+$"^^ . _:Na8ff46ff061a4e4a820f4d98132c5c3a . . "rossana.paciello@ingv.it" . . "https://www.nfdi.de/wp-content/uploads/2023/03/NFDI_4_Biodiversity___Logo_Positiv_Kopie.png"^^ . . . . "https://www.ebi.ac.uk/gxa/genes/$1"^^ . "The Darwin Core term establishmentMeans provides information about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans. The Establishment Means Controlled Vocabulary provides terms that should be used as values for dwc:establishmentMeans and dwciri:establishmentMeans."^^ . . "genome" . . "visual materials" . "biomedical science" . "go-term enrichment data" . . . "This ontology defines traits of the International Wheat Information System (IWIS) database and wheat descriptor. The Wheat Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . . . "pathway" . . . "pharmacy" . . "http://sweetontology.net/matrEnergy/$1"^^ . "false"^^ . . . . . . "linguistics" . . "life science" . "The Emotion Response Ontology represents emotions as behavioral responses."^^ . "https://mgtbind.pkumdl.cn/citation/$1"^^ . . . . . "false"^^ . . . "deims" . "^[a-z]\\w+$"^^ . "bolton@ncbi.nlm.nih.gov" . . . . "EntityRole"^^ . . . "^10.\\w{4}/\\w{10}$"^^ . . . . . . "IOC: Internet of Construction Ontology" . "http://www.isni.org/isni/"^^ . . "This ontology defines a set of properties which may be used for reprenting physical quantities. Each is an RDF Property which realtes a quantity to a number which expreses the quantity in that expressed that quntity in the given unit. :bed ex:length _:a. _a: m 2. Property chaining is the equivalent of unit multiplication. Inverse properties correspond to reciprocal units. Because conventional signs for units are very case-sensitive, this ontology breaks from the normal convention that all property localnames begin with lowercase. See also http://www-ksl.stanford.edu/knowledge-sharing/papers/engmath.html"^^ . . . "life sciences, biology" . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID="^^ . . "interaction" . "Causation"^^ . "opm" . "sopropdr" . . "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier."^^ . "http://sweetontology.net/realmHydro/$1"^^ . "https://www.ncbi.nlm.nih.gov/gene/"^^ . . "nif.grossanatomy" . . . "Sampling Procedure" . "A vocabulary used in tandem with SHACL for representing node shapes"^^ . . "^[a-zA-Z]+-[a-zA-Z0-9()]+(-[a-zA-Z0-9]*)?$"^^ . . "http://www.opengis.net/def/function/geosparql/$1"^^ . . . . . . . . "EcoliWiki" . . . . . . "vocabularies" . "ecyano" . "ontology" . . "emolecules" . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Cryosphere"^^ . . "ampere"^^ . "false"^^ . "National Academic Research and Collaborations Information System" . "Airglow"^^ . . . . . . "HoloFood animal" . . "amalik@ebi.ac.uk" . . . . "AUSSDA"^^ . . "ontology" . "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."^^ . . . . "Rutger Vos" . . "connectedTo"^^ . . . . "Heat Pump Ontology" . . . "feolo@ncbi.nlm.nih.gov" . . . . "registry" . . . "taxonomy" . "Gm00047"^^ . . "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.[nB]\\d{1,3}|\\.-\\.-\\.-|\\.\\d{1,3}\\.-\\.-|\\.\\d{1,3}\\.\\d{1,3}\\.-)?$"^^ . . . "genomics" . . . . "614"^^ . . "false"^^ . . . "ecosystem" . . . . . "614"^^ . "genome/gene" . "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code="^^ . . . "population genetics" . . . "^((S\\d{4}-\\d{4}\\(\\d{2}\\)\\d{5})|(B\\d-\\d{3}-\\d{5}-\\d/\\d{5}))-[\\d|X]$"^^ . "^[a-z]+(\\..*?)?$"^^ . "false"^^ . "carbohydrate" . "loc" . "http://sideeffects.embl.de/drugs/$1"^^ . . . "earth sciences" . "Informed Consent Ontology" . . "Physics Subject Headings" . "t4fs" . "iceberg" . "Linked Data Platform Vocabulary" . "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"^^ . . "spar" . "SED-ML data format" . . . . . . . . "protein" . . . "false"^^ . "obo" . . . . . . "^\\d{7}$"^^ . . . . "INSDC CDS" . "oeai" . "ancient cultures" . _:Nbea7bea3660144da80864b02c96d7fef "Pierre Sprumont" . . "recombinant dna" . . . "https://suprabank.org/interactions/$1"^^ . . "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information."^^ . . "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions."^^ . "The Cert Ontology" . . "https://dialnet.unirioja.es/servlet/articulo?codigo="^^ . "W2741809807"^^ . . . . "https://w3id.org/polymat/"^^ . . "genome/gene" . "chemistry" . "division"^^ . . . "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life."^^ . . . "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)"^^ . "false"^^ . "transcription factor" . . _:N19daddd950894579854f63b23caae22b "Andrzej Elzanowski" . . . . . "averageOver"^^ . "opmi" . "http://purl.obolibrary.org/obo/ZP_$1"^^ . . . . . . "false"^^ . "https://ieeexplore.ieee.org/document/$1"^^ . . "ontology" . "Gramene Gene" . "^\\d{7}$"^^ . . . . "competence" . . "GitHub Issue" . "ontology" . "tokue" . "http://www.cidoc-crm.org/cidoc-crm/"^^ . . "sumso" . . . "The Supply Chain Operation Reference (SCOR) is a cross-industry approach to lay the groundwork for more efficient and effective information exchange in supply networks."^^ . . . . "ontology" . . . . . . "https://www.ebi.ac.uk/interpro/entry/InterPro/$1"^^ . . . . . . . "3771992"^^ . . . "false"^^ . "http://nfdi4earth.de/ontology/"^^ . . . . "biochemistry" . . . "0000008"^^ . "Korean Cell Line Bank" . . "http://sweetontology.net/proc/$1"^^ . . . "false"^^ . "https://w3id.org/tso#$1"^^ . "vmh.gene" . "classification" . . . . . "nbn" . . . "The cell line vocabulary inside FlyBase"^^ . . "hospital" . "w3" . . . "pfam" . . . . "Arthit Suriyawongkul" . . "This subject heading system has beeen developed for use in FID BAUdigital and its future web services. It covers scientific fields of Civil Engineering, Architecture and Urban Studies with a special section on digitization. This subject classification has been mapped to several other classification systems. The latest version of the subject classification including these mappings is available at https://gitlab.com/fid-bau/terminologie/fid-baudigital-faecherklassifikation/-/raw/main/Subject_Headings_all_mappings.owl."^^ . "knowledge and information systems" . "protein identification" . "mirna" . . "muamith@utmb.edu" . . . . "phenomena" . . "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object="^^ . . . . . . . "gene" . "obo" . . . . . "3305"^^ . . . . . . "nfdi4ing" . "VHOG_RETIRED" . "InfragenericTaxon"^^ . . "http://sweetontology.net/propCategorical/$1"^^ . "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents."^^ . "cloud" . "nfdi4cat" . . "AdvectionFog"^^ . . "The Learning Resource Metadata Innovation (LRMI) specification is a collection of classes and properties for markup and description of educational resources. The specification builds on the extensive vocabulary provided by Schema.org and other standards. LRMI terms not included in schema.org may nevertheless be used to augment and enrich Schema.org markup. (from homepage)"^^ . . . "false"^^ . "data mining" . . . _:N3281637cb7e74a7f83cfe058b551151f . "Identifier (name code) for a taxon in the catalogue of life in taiwan"^^ . . "8639.1"^^ . . "repository" . . . . . "http://purl.obolibrary.org/obo/TAXRANK_"^^ . . . . "centrally registered identifier" . . . . . "https://www.worldcat.org/isbn/$1"^^ . "https://www.ebi.ac.uk/metabolights/$1"^^ . . . . "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders."^^ . . . . "National Microbiome Data Collaborative" . "immunology" . . . "0000780"^^ . . . "cgrove@caltech.edu" . . . "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/"^^ . _:Nf7d1a6fbd69d404ea73b079391286b8f "Gregg Kellogg" . . "electrical engineering" . . . . . . . . "ICD9CM_2005" . "audio-visual entrainment" . . . _:N092ac3ba259b4ccfa029ea6050b4b9fd "ga.ubbiali@gmail.com" . . . . "baseDimensionEnumeration"^^ . . "https://saref.etsi.org/saref4city/$1"^^ . . . "preclinical studies" . "German Archaeological Institute Thesaurus" . . "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively."^^ . . . "MultiCellDS" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Volcano"^^ . . "genetic variation" . . . . . . "pylebail@rennes.inra.fr" . . . "fid move" . "AirPressure"^^ . . "dialnet.author" . . . . "false"^^ . "health science" . "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family="^^ . "https://athena.ohdsi.org/search-terms/terms/"^^ . "Andrea Jacobs" . . . "function analysis" . "^[1-9]\\d*$"^^ . . "genomics" . . . . "transgenic" . "authorList"^^ . "biosimulations" . . "genomic sequence" . . "A database-specific registry supporting curation in the Gene Ontology" . "49"^^ . . "omiabis" . "false"^^ . "MIMIC III Database" . . . "MIRBASEM" . . "http://purl.org/obo/owlEOL_$1"^^ . . "gesis" . . "12345"^^ . "http://gov.genealogy.net/types.owl#$1"^^ . "https://pephub.databio.org/"^^ . . . . "sweet.realo" . "dogont" . . . . . . . . . "Abyss"^^ . . "miscellaneous" . . . "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1"^^ . "https://aftol.umn.edu/glossary?category=$1"^^ . . . . "Aisling Doyle" . . "dalia.oer" . . "classification" . "life science" . "ieee.document" . . . "genetics" . "^\\d+$"^^ . . . . . . . . "engineering" . "education" . . . . "genome/gene" . . "nfdi-matwerk" . . . "false"^^ . . "ontology" . "STUDY1040"^^ . . . "false"^^ . "http://sweetontology.net/reprDataModel/$1"^^ . "Pharmacogene Variation Consortium" . . . . . . . "drug" . . . . . "false"^^ . "^[A-Z]+[0-9]+$"^^ . _:N26f2aa29206f4097a4961a5b7e47bba3 . "marc21" . . . "false"^^ . "phylogenetics" . "https://cd-code.org/condensates/$1"^^ . . . "dna" . . "FlyBase Qualifiers" . . . "http://data.europa.eu/esco/skill/$1"^^ . . "PaxDb Organism" . "^\\d+$"^^ . "http://metnetonline.org/browse_pathway2.php?pthID="^^ . "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp="^^ . "sorepsrs" . . . . . . . "MCDS_S_0000000001"^^ . "florianv/swap"^^ . . . . . "false"^^ . . "biopax" . "http://purl.obolibrary.org/obo/BMONT_$1"^^ . "Mode Of Collection" . . . . "biology" . . . "genome/gene" . "rna" . "https://www.metabolomicsworkbench.org/data/StructureData.php?RegNo=$1"^^ . . "mixing" . "HS000015122"^^ . . . "Aggregation Method" . "Vibrational Spectroscopy Ontology" . "FAIRsharing Subject Ontology" . . . . "http://lisanwanglab.org/DASHR/entry/$1"^^ . "762"^^ . "false"^^ . . . . "inchi" . . . "strenda" . . . "ontology" . . "http://uri.neuinfo.org/nif/nifstd/$1"^^ . "This ontology covers the requirements of S2 and SPINE specifications which define Energy Flexibility. This ontology uses entities from powerLimit and incentive ontologies. Also existing standards saref and s4ener are imported for reuse and extention."^^ . . . "ontology" . . "false"^^ . "http://purl.uniprot.org/annotation/VAR_"^^ . "jimhu@tamu.edu" . "curies"^^ . "^CDBL00\\d{6}$"^^ . . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances."^^ . . . "nfdi4cat" . . . "audio-visual entrainment" . . "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored."^^ . "false"^^ . . "drug repositioning" . "Ontology describing a controlled vocabulary for taxon ranks."^^ . "PDBeChem" . "The type of date, if possible, following the RKMS‐ISO8601 standard."^^ . "ENSG00000169174"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass Flux"^^ . "https://purls.helmholtz-metadaten.de/prima/core#"^^ . "vendor" . "spdx.licenses" . . . . "^\\d+$"^^ . . "neuroscience" . . "interaction/pathway" . . "false"^^ . "0000009"^^ . . "http://sweetontology.net/matrAerosol/"^^ . . . . . "This resource provides identifiers for listed hazardous wastes which are substances explicitly identified due to their potential harm to human health and the environment. These are categorized into four groups (F, K, P, and U) based on specific criteria, such as their source or inherent properties."^^ . . . . . "ecology" . "false"^^ . "http://bacmap.wishartlab.com/organisms/$1"^^ . . . "Data Commons" . "http://purl.org/NET/biol/botany#"^^ . "https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr="^^ . . . "hpm.protein" . . . . . . . "sweet.realf" . "^\\d{7}$"^^ . "engineering" . "^\\d+$"^^ . . . . "zachll@umich.edu" . . . . . "genome" . "biomedical science" . "ontology" . "matthias.samwald@meduniwien.ac.at" . "emea" . "ontology" . . . . "false"^^ . "faseb list" . "A system of classification for Cultural Heritage Organizations developed by the Library of Congress."^^ . "obo" . "true"^^ . "http://purl.obolibrary.org/obo/CVDO_"^^ . "^\\d+$"^^ . . . . "life science" . . "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components."^^ . "alfred" . . . . . "^001\\d{5}$"^^ . . "molecule" . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Storm"^^ . "sequence" . . "Fossilworks Taxon" . . . . "^[A-Z]-[0-9A-Z]{3}-[0-9A-Z]{3}$"^^ . . "computational biology" . . "MeSH 2013" . "gene name" . . . . . . . . "medicine" . . . "biomedical science" . . "orographicland" . "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students."^^ . "1119"^^ . "rna" . . . . "biology" . . "ess" . . . "Identifiers for Major Histocompatibility Complex (MHC) restrictions of immune cells, detailing genetic factors that influence immune recognition."^^ . . "controlled term" . "http://sweetontology.net/realmRegion/"^^ . "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID="^^ . . "protein" . . . "EcoLexicon" . "http://purl.obolibrary.org/obo/VT_$1"^^ . "runBioSimulations" . . . . . "life science" . "LOC_Os02g13300"^^ . . . . "biosimulations" . . . . . "evolutionary biology" . "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query="^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Assessment"^^ . "^OSR\\d{4}$"^^ . . . _:Nefe5d7d6881d4dec845881bb7226bf0c "coli-conc@gbv.de" . "cellxgene.collection" . "institution" . . . "ddi.typeofaddress" . . "https://www.biolegend.com/Default.aspx?ID=6664&productid="^^ . "https://sparontologies.github.io/fabio/current/fabio.html#"^^ . . . "health science" . "false"^^ . "geography" . . . "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic"^^ . . "identifier for researchers in Japan used in government-based research funding (from 1980s)"^^ . "uniprot.journal" . "proccaserra@gmail.com" . . . "false"^^ . "https://ice.ntp.niehs.nih.gov/api/v1/search?chemid="^^ . "SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way."^^ . "ontology" . . . . "SCOP(e) concise classification string" . . . "This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)"^^ . "false"^^ . . "Genetic and Rare Diseases Information Center" . "^\\w+(\\.\\d+)?(\\.\\d+)?$"^^ . "http://csbl.bmb.uga.edu/DOOR/operon.php?id="^^ . . "1968"^^ . . . . . . "http://purl.obolibrary.org/obo/GENEPIO_"^^ . . "earth sciences" . . . . "http://www.w3.org/ns/ssn/systems/$1"^^ . "ontology" . . . "life science" . . . "clement.jonquet@inrae.fr" . . . . "634515043"^^ . . . "http://sweetontology.net/realmHydroBody/$1"^^ . . "https://data.chembiosys.de/tags/$1"^^ . "bioimaging" . . . "false"^^ . . . . "false"^^ . . "rateRule"^^ . . "FHIR United States Implementation Guides" . . . "ATC_code" . . "adcad" . . . . . . . . . "Cell line collections (Providers)"^^ . . . . . . . . . . "image/movie" . . . "ontology" . "false"^^ . "false"^^ . "life science" . . "^[a-zA-Z0-9_\\.]+$"^^ . . "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1"^^ . "http://purl.jp/bio/4/id/"^^ . . . "interaction/pathway" . "false"^^ . "Ontology of Biological and Clinical Statistics" . . . . "ontology" . . . . . "inhibitors" . . "false"^^ . . . . "trichdb" . "chemical structure" . "Ian Foster" . . "SKIP001214"^^ . . "phenomena" . "pathway" . . "http://sweetontology.net/phenGeolVolcano/$1"^^ . . . . . "measurement" . . "kim.hcrt" . . "false"^^ . . . . . . . . "chromium"^^ . "infectious disease medicine" . . . "^SEQF\\d+(?:\\.\\d+)?$"^^ . "carbohydrate" . "IST028"^^ . . "C6155"^^ . . "sequence" . "https://vocabularies.cessda.eu/vocabulary/Variables-Relations?lang=en#code_$1"^^ . . . . "A canonical biomarker, which describes the composition of a measurement on a change to an entity. For example, the increase in IL6 level"^^ . "pathway" . "false"^^ . "LipidBank" . . "GT10"^^ . "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept"^^ . . . "ontology" . "slkbase" . "eukaryotic Subcellular Localization database" . . . . . "https://data.4dnucleome.org/biosources/$1"^^ . . . . "http://purl.obolibrary.org/obo/ATO_"^^ . "method" . . "^\\d{3}-\\d{3}-\\d$"^^ . . "provided by" . . "agriculture" . . . "FlyBase Controlled Vocabulary" . . "http://purl.obolibrary.org/obo/PRIDE_"^^ . "paralogous" . . "sequence feature" . . "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1"^^ . . . . "Identifiers correspond to curated associations between diseases and tRNA-derived small RNAs (tsRNAs) in the tsRNADisease database."^^ . "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"^^ . . "molecular interaction" . . . "karel.berka@upol.cz" . "genotype" . . "false"^^ . . . "200282"^^ . "0000027"^^ . . "40135"^^ . . "si" . . . "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=$1"^^ . . "ARBA00000001"^^ . "drug" . . . . "James McLaughlin" . "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images."^^ . "topics" . . . "representation space geometry 3d" . . "https://www.ebi.ac.uk/chembl/compound/inspect/$1"^^ . . . "^\\d+$"^^ . . . "https://purl.archive.org/tfsco/TFSCO_$1"^^ . "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^ . . . "A list containing the file types on which data is saved on."^^ . . . "false"^^ . . "nfdi-matwerk" . . "Conditions of Access" . . "sheeba.samuel@uni-jena.de" . . . "endlessforms.library" . "false"^^ . "BugBase Protocol" . "https://brickschema.org/schema/Brick#$1"^^ . "http://purl.org/cerif/frapo/$1"^^ . . . . "Olaf Bánki" . "Lukas A. Mueller" . "^[A-Za-z0-9]+$"^^ . . . "interaction" . . . . . . "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . "Amphibian taxonomy" . "protecting group" . . . . "Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."^^ . . . . . "exmo" . . . "Rice Annotation Project Database Locus" . . "http://www.kegg.jp/entry/$1"^^ . . "asfis" . "mohamed-el-amine.boukerfa@inrae.fr" . "deoxyribonucleic acid" . "g.gkoutos@gmail.com" . . . "false"^^ . . "ontology/terminology/nomenclature" . "anatomy" . "true"^^ . "https://bioregistry.io/cubedb:"^^ . "phenomena" . . "PIRSF000100"^^ . . . . . "^[A-Z]\\d+$"^^ . . "teri.klein@stanford.edu" . . "salamander" . "http://sweetontology.net/matrRockIgneous/$1"^^ . . . "protein" . "false"^^ . . . . "anatomy" . . "SWEET Ontology Relationships Physical" . "false"^^ . . . "transcriptomics" . . "schaefermeier@infai.org" . "protein domain" . "ontology" . "cdt" . . "^\\d{7}$"^^ . . . "Curtis Ross" . . . . . . . "organism-specific databases" . . . "brenda" . . . . "taxonomic classification" . "body_symmetry"^^ . . . . "economics" . "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1"^^ . . "false"^^ . . . . . "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1"^^ . . "tib.meth" . . . "http://w3id.org/openeduhub/vocabs/educationalContext/"^^ . . . "1"^^ . "chebi" . . . . . "ess" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Compound"^^ . . . . . "false"^^ . . . "http://www.w3.org/1999/02/22-rdf-syntax-ns#"^^ . . "Ontology for MicroRNA Target" . "WGS84 Geo Positioning" . "http://sweetontology.net/phenBiol/$1"^^ . . . . . . "^[A-Za-z-0-9_]+(\\@)?$"^^ . . "computer science" . . "interaction" . "tdwg.taxonrank" . "https://cropontology.org/rdf/CO_356:"^^ . "false"^^ . . . "skm" . . . . . . "health/disease" . "https://openenergyplatform.org/ontology/oeo/OEO_"^^ . "fairsharing" . "nfdi4ing" . . . . . . . "http://sweetontology.net/relaHuman/$1"^^ . "^\\w+$"^^ . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID="^^ . . . . "life science" . "merriamwebster" . . "model organisms" . "life cycle" . . . "https://ssrn.com/author=$1"^^ . "Neil D Rawlings" . "animal husbandry" . . "MGnify Study" . "Ontology for simulation, modelling, and optimization" . . . . . "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons."^^ . . . . "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . "01027931310-01022252312"^^ . . . "subject" . "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome."^^ . "0000010"^^ . . "nawrocke@ncbi.nlm.nih.gov" . . . . . . "http://w3id.org/owlstar/"^^ . . . "ontology" . . . . . "soman" . "health/disease" . . "biomedical science" . "^\\d+$"^^ . . "gfbio.kingdom" . . . . "Sequence-Structural Templates of Single-member Superfamilies" . . . "uniprot" . . "https://www.ipni.org/a/$1"^^ . "taxonomy" . "protocol" . "asteraceaegd.genome" . . "beta cell" . "The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities."^^ . . "2af339dd-a956-471f-9406-b0f74bacd579"^^ . . . "NFDI4Immuno Collection" . . . . . . "false"^^ . . "vaccine" . . . "life science" . . . . . "NIF Cell" . . "categorical" . . . "ontology" . . "dna sequence" . . . . "loc" . "Lattes Platform number" . . "chemical and environmental engineering" . "FishBase" . "computer science" . . "atc" . "Alen Vodopijevec" . . "phenotype" . . . _:N303350e101824790a487de1349c5e5b7 "Steve Baskauf" . . . . "0000062"^^ . . "^UCR\\d{5}$"^^ . . "10004892"^^ . "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1"^^ . . "https://www.datanator.info/gene/$1"^^ . "Stewart Thomas Cole" . . . . "computer science" . "pfam" . "genotyping" . . . . . . . . . "http://purl.obolibrary.org/obo/PSO_"^^ . . . "Stian Soiland-Reyes" . . . "drsanv0" . "soproptf" . . "ess" . . . . . "ontology" . . . . . . "UR-DBMS Syndrome Finder" . "false"^^ . _:Nf7f43ab158c24ea6a3cf0035ffafc04f . . . . "D00123"^^ . . . "NIF Standard Ontology: Brain Regions" . . "sweet.stp" . "false"^^ . "nfdixcs" . . . . . "flybase" . . . "genefarm" . . "protein" . . . . . "Indications and other conditions in drugbank"^^ . "wdrs" . "false"^^ . . "https://www.ebi.ac.uk/intact/search?query=$1"^^ . . . . . . . "false"^^ . . . . . "ExAC Variant" . "contentLocationType"^^ . . . . . "12791954"^^ . "0000008"^^ . . "NFDIxCS Collection" . . . . . . "sequence" . . . . . "true"^^ . . "https://biopragmatics.github.io/providers/schem/"^^ . . . . "false"^^ . . "cpga" . . "binding site" . . "false"^^ . "agriculture" . "glycomics" . . . . . . . . "http://func.mshri.on.ca/human/genes/list_functional_scores/"^^ . . "http://database.deepsolar.space:18080/dbs/nlfff/$1"^^ . "literature curation" . "LIDO Terminology Term Materials Tech Type" . . "RDFa Vocabulary for Term and Prefix Assignment, and for Processor Graph Reporting" . . . . "Petra C. Steiner" . "mt002305"^^ . "COMBINE specifications" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Protected"^^ . "vcard" . . "https://www.gtexportal.org/home/gene/"^^ . . "https://lobid.org/gnd/$1"^^ . . "architecture" . "iot" . "Event"^^ . "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1"^^ . "National Drug Data File" . . . "8cf84adb-b4db-4807-ac98-0004247c35df"^^ . . "ontology" . "clingen.allele" . . . "true"^^ . "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function."^^ . . "MatrixDB" . . . "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology."^^ . . "protocols and materials databases" . . "regulation" . . . . "http://purl.org/spar/scoro/"^^ . . "interaction" . . "21723"^^ . . . . . . . . "Dimension"^^ . . . . . . "false"^^ . . "false"^^ . "image/movie" . "0003fc3f-1522-4fca-bf3f-bcef0dcec405"^^ . . . "false"^^ . "A0A009HB13"^^ . "obo" . . . . . . . "civic.source" . "saref.city" . . "1668761"^^ . . . . "https://bioregistry.io/genpept:"^^ . "ontology" . . . "reagent" . . "http://sweetontology.net/realmAstroStar/$1"^^ . . . "false"^^ . "http://sweetontology.net/realmLandform/$1"^^ . . . "false"^^ . "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . "https://horizondiscovery.com/en/search?searchterm=$1"^^ . . . "taxonomy" . . . "senso" . . "true"^^ . "GRIN Plant Taxonomy" . . . "proteomic databases" . . "biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology" . . . . "apollosv" . . . "false"^^ . . . . . . "SWEET Ontology Property" . . . . . . . . . . "soreas" . "ontology" . "A structured controlled vocabulary of the development of Drosophila melanogaster."^^ . . "endocrinology" . "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary."^^ . "ontology" . . . . "rna-seq assay" . "http://purl.obolibrary.org/obo/ZFS_$1"^^ . . "http://purl.dataone.org/odo/SENSO_"^^ . . "http://www.w3.org/2001/XMLSchema#$1"^^ . "Eukaryotic Promoter Database" . . "sweet.propfu" . . . . . . "next generation sequencing" . "co_346" . "rdf" . "MCDS_C_0000000001"^^ . "http://www.bioinfo.org/NONCODEv4/show_rna.php?id="^^ . . . . . "hagr.genage" . "http://terminology.lido-schema.org/actor_type/$1"^^ . "kim.conditionsofaccess" . "^GCST\\d{6}\\d*$"^^ . . . . . . "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1"^^ . "ecotoxicity" . . "bibframe"^^ . "NCBI Registry" . "false"^^ . "nfdi4cat" . "health/disease" . . "RelatedPerson"^^ . . "emmo" . "image/movie" . . _:Na10ef4aa83064c51a38ef91db21c80c1 . "http://purl.obolibrary.org/obo/AERO_"^^ . . "Ontology for the TNO interconnect project describing incentives"^^ . "Unified Medical Language System Atomic Unique Identifier" . . . . "Overview of Medical Research in the Netherlands" . . . "https://www.researchgate.net/profile/$1"^^ . . . . "Roger Hyam" . . . "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode="^^ . "YMDB00001"^^ . . "sweet.mamin" . . . "^\\d+$"^^ . . "false"^^ . . . "ajacobs@cas.org" . _:N320cdd605e31436e93c21b539432aa75 . . . "https://aftol.umn.edu/glossary?category="^^ . . . "classification" . . "iRefWeb" . . . . "https://amphibiaweb.org/species/$1"^^ . . . . . . "loc.countries" . . "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1"^^ . "sequence" . . "molecular interaction" . . "Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan."^^ . . "protein binding domain" . "http://www.w3.org/2003/01/geo/wgs84_pos#$1"^^ . "Harshad Hegde" . . . . . . . . "https://www.w3.org/ns/i18n#$1"^^ . . . . "DrugCentral provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action."^^ . . . . "http://nbn-resolving.org/"^^ . . "fbsp" . . . . . "engelsta@ohsu.edu" . "benjamin_gyori@hms.harvard.edu" . . "sophhe" . . "false"^^ . . . . . . . "pmdco" . . . "botany" . . . . . "phenotype" . "false"^^ . "http://multicellds.org/MultiCellDB/$1"^^ . "Handle" . "representation mathematics graph" . . "https://fungi.ensembl.org/id/"^^ . "^\\d+$"^^ . . . "true"^^ . "false"^^ . "civil engineering" . . . "https://w3id.org/sstim/vocab#"^^ . . . . "https://www.ebi.ac.uk/interpro/entry/pfam/"^^ . "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1"^^ . . "data analysis" . . "https://w3id.org/kim/schularten/"^^ . . . "proteomics" . "engineering" . . "http://sweetontology.net/matrNaturalResource/$1"^^ . . "An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO."^^ . "GeoNames Feature Code" . . "false"^^ . . "kim.educationlevel" . . "Browser for the periodic table of the elements"^^ . "false"^^ . "allele" . _:Ncf368068c78b4d8cbea1d176ecac8547 "eric.duchene@inrae.fr" . "ExAC Gene" . . "phenomics" . . . "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities."^^ . . "485991"^^ . . . "^\\d+$"^^ . "portal" . . . . "^\\d+$"^^ . "obo" . . . . . . "metabolite" . . . . . "http://www-snorna.biotoul.fr/plus.php?id=$1"^^ . "false"^^ . . . "imgt.ligm" . "genome" . . "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1"^^ . . . "tib.fto" . "false"^^ . "dcatap_plus" . "phenotype" . "http://www.fairsharing.org/ontology/subject/SRAO_"^^ . . "Cellular Phenotypes" . "https://ibdc.dbtindia.gov.in/icpd/study-view-home/"^^ . . . . . . . "preclinical studies" . . . "dev.ga4ghdos" . "0000050"^^ . . . "false"^^ . "Human ancestry ontology for the NHGRI GWAS Catalog"^^ . . . . "ontology" . "metabolite" . "This vocabulary defines education levels for pre-kindergarten through grade 12 for the United States. It also defines general categories for post-secondary education (vocational, professional and life-long learning)."^^ . . . "acdhchvs" . . "sweet.realp" . "false"^^ . . . . "small molecule binding" . . "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information."^^ . . "BidEnergySetpointSignal"^^ . "life sciences, biology" . "ontology" . "ontology" . "false"^^ . . "false"^^ . "health science" . "https://w3id.org/sstim/exposure#"^^ . . . "https://purls.helmholtz-metadaten.de/emg/EMG_"^^ . "genetic polymorphism" . "A digital photo archive"^^ . . . "Ronald C. Beavis (Ron Beavis)" . "^\\d+$"^^ . . "false"^^ . "ISFinder" . . "structure" . . . "sperm" . "researcher" . . "The type attribute of the LIDO Identifier Complex Type element qualifies the type of identifier used. Identifiers are assigned codes that are used to reference the resource being identified. Their scope may be either locally or globally unique and within that scope enable establishing comparison of equality. This vocabulary provides values for the type attribute of the following LIDO identifier elements: Published Object Identifier, LIDO Metadata Record-ID, Actor Identifier, Concept Identifier, Description/Descriptive Note Identifier, Event Identifier, Legal Body ID, Object Identifier, Place Identifier, Record Info ID, Record ID, Resource Identification Number."^^ . . "false"^^ . "EAWAG Biocatalysis/Biodegradation Database pathway" . "Thesaurus for long-term ecological research, monitoring, experiments" . . . "ontology" . . . . "chemical" . . "American Folklore Society Ethnographic Thesaurus" . . "The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.\n\n\n![SAREF4SYST overview](diagrams/overview.png)"^^ . . "false"^^ . . "false"^^ . . . "sdis" . "https://web.expasy.org/abcd/ABCD_$1"^^ . . "subcellular compartment" . . . . "A application driven Epilepsy Ontology with official terms from the ILAE."^^ . "Unified Phenotype Ontology" . . . . "drug" . . . . "https://schema.coypu.org/vtf#$1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Conductivity"^^ . "ontology" . "RNA SSTRAND" . . . . "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1"^^ . . . . . . . . "^\\d+$"^^ . "http://sweetontology.net/reprSciLaw/"^^ . "recombinant inbred rat" . . "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid="^^ . "obo" . "license" . . . "cell" . "false"^^ . "Thesaurus of Plant Characteristics" . . . "person" . "funcbase.human" . "An ontology of physico-chemical methods and properties."^^ . . . . . . "emmo" . . . . "mediadive.medium" . "geologic seismicity" . . . . "genome" . "http://purl.obolibrary.org/obo/MIAPA_$1"^^ . "A sub-registry of the Library of Congress Linked Data Service"^^ . "nfdi4ing" . "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver."^^ . "SD00043"^^ . "phrr" . . "state data processing" . . "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$"^^ . _:N303350e101824790a487de1349c5e5b7 . "Coli Genetic Stock Center" . "owl" . . . "computer science" . "Systems Biology Ontology" . "hgnc" . "https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=$1"^^ . . . "https://www.ebi.ac.uk/ena/data/view/"^^ . . "NLXQUAL" . "ontology" . "sargon" . "false"^^ . . "^A_\\d+_.+$"^^ . . "false"^^ . "Array"^^ . . "protein" . . . . . . "http://sweetontology.net/reprTimeDay/"^^ . "cdna/est" . . . . . . "life sciences, biology" . . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . "schneiderg@zbmed.de" . . . . "linguist.gold" . . "preprints" . . . . . . "AirEmissionKind"^^ . "http://www.iresite.org/IRESite_web.php?page=view&entry_id="^^ . . . . . "genome" . . "Center"^^ . . "casent0106247"^^ . . . "https://www.ebi.ac.uk/interpro/entry/antifam/$1"^^ . . "https://sciprofiles.com/profile/$1"^^ . "metadata standardization" . . . "CRISP Thesaurus, 2006" . . "iNaturalist Observation" . . "https://www.w3.org/2019/wot/td#"^^ . . . . . . . . . . . . . . . "obo_rel" . "molecular interaction" . "botany" . . . . . . . . . "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones."^^ . . "false"^^ . . "6e3b1371-59d7-481a-9db4-cd0d0de98436"^^ . . "https://cropontology.org/rdf/CO_335:"^^ . . . . "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB."^^ . . "enzyme" . . . "https://www.ncbi.nlm.nih.gov/books/$1"^^ . "http://ontology.tno.nl/logiserv#"^^ . . . . . . . . . . "0000088"^^ . . . . . "obo" . "fossilworks" . . . . . "http://purl.obolibrary.org/obo/SPD_$1"^^ . "protein" . "true"^^ . "SWEET Ontology Realm Cryosphere" . . . . . . . . "drao" . "https://vcell.org/biomodel-"^^ . "3d structure" . "MITE (Minimum Information about a Tailoring Enzyme) is a data repository and associated data standard designed to capture the reaction- and substrate-specificities of tailoring enzymes. Community-driven and fully expert-reviewed, it represents enzymatic reactions using reaction SMARTS and links to established resources such as UniProt, NCBI GenPept, Rhea, and MIBiG. MITE serves as a knowledgebase for enzyme and pathway annotation, in silico biosynthesis, and machine learning applications."^^ . . . . "https://euclinicaltrials.eu/app/#/view/$1"^^ . . . . _:Nfc2e3a104f9f4a268b8037ab19e04566 "custserv@nlm.nih.gov" . . . . "jcsd" . . "SWEET Ontology Phenomena Atmosphere Cloud" . . "life science" . "00005643"^^ . "gdo" . . . . . . "deletion" . "false"^^ . "false"^^ . . . . . "Actuator"^^ . . . "A controlled vocabulary to support the study of transcription in the mouse brain"^^ . . . . "https://purl.org/linsearch/"^^ . "ontology" . "MGnify Sample" . . . . . "false"^^ . _:Nb61a68518ff148e29e4b64111fe7c174 . "sweet.repdsa" . "metabolite" . "assay" . "chebi"^^ . "obo" . . "rice" . . "traumatology" . . "377369"^^ . . . . "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1"^^ . . "Joy Owango" . . . . "01"^^ . "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments."^^ . "986802"^^ . . "ontology" . . . . "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$"^^ . . "crm"^^ . "^(conceptualization|data-curation|formal-analysis|funding-acquisition|investigation|methodology|project-administration|resources|software|supervision|validation|visualization|writing-original-draft|writing-review-editing)$"^^ . "https://rism.online/$1"^^ . "http://www.w3.org/2001/XMLSchema#"^^ . . . "AgeostrophicWind"^^ . "identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide"^^ . "Ontology of Precision Medicine and Investigation" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Diffusivity"^^ . "reactions" . "http://drugcentral.org/drugcard/"^^ . "Yam Ontology" . . . . "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . . "phenomics" . "phylogenetics" . . . "no_login"^^ . . . "SIGNOR-252737"^^ . . "A set of best practices and simple approach for a read-write Linked Data architecture, based on HTTP access to web resources that describe their state using the RDF data model."^^ . "LNC" . . . . . . "https://biopragmatics.github.io/debio/$1"^^ . . . . . . . . . "biomedical science" . . . . "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes."^^ . "bibliography/documents" . . "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt="^^ . "somael" . . "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id="^^ . "chmo" . . "SFB_COVID19_MW286762"^^ . "^\\d+$"^^ . "https://w3id.org/sstim/ecosystem#$1"^^ . . "Human Developmental Stages" . . . . . . "covid-19" . . . "http://sweetontology.net/phenStar/$1"^^ . . . . . . "http://www.jstor.org/stable/"^^ . . . . "ddi.aggregationmethod" . "false"^^ . . "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence."^^ . . . . . "^[0-9]+$"^^ . "Subcellular Anatomy Ontology" . . "MESHC" . "protein identification" . . "development" . "A repository of software packages written in Javascript, TypeScript, and related."^^ . . . "algorithm"^^ . . . . "https://vocabularies.cessda.eu/vocabulary/TypeOfInstrument?lang=en#code_"^^ . . . . . . "MPATH" . . "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-"^^ . . . . "ontology" . "false"^^ . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . "evolution" . . "http://w3id.org/ioc#"^^ . . . "6237"^^ . "Liliana Andres Hernandez" . "transcriptomics" . "https://bioregistry.io/d1id:"^^ . . "^\\d+$"^^ . "false"^^ . "https://www.w3.org/2002/12/cal/ical#$1"^^ . . "bido" . "https://www.eionet.europa.eu/gemet/en/theme/$1"^^ . . . "f665230-5267"^^ . . . . . "grsdb" . . . "false"^^ . . . . . "ontology" . "A schema for representing power limits and switches"^^ . . "isced-2013" . "false"^^ . . . . . . . . "ddanat" . . "JCRB1355"^^ . . "AN6278"^^ . . "tchen@forsyth.org" . "developmental biology" . "regulation of gene expression" . . . . . "nfdi4ing" . . "BRIP1"^^ . "beck@ncbi.nlm.nih.gov" . "https://permalink.obvsg.at/"^^ . . . . . . . . . . . "Austral"^^ . "http://si-digital-framework.org/SI#"^^ . . . . "https://www.ebi.ac.uk/gwas/studies/$1"^^ . "ACYPI000159"^^ . . . "protein trap" . . . . "curated information" . "false"^^ . . "cldb" . "botany" . . "Barley Ontology" . . "funcbase.yeast" . . "annotation" . "metabolite" . . . . . . "http://degradome.uniovi.es/cgi-bin/protease/$1"^^ . . "ion" . "https://tetrahymena.vet.cornell.edu/display.php?stockid=$1"^^ . . "ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides and maintains identifiers for alleles."^^ . . . "https://data.terra.bio/ga4gh/drs/v1/objects/$1"^^ . . . . "OWL ontology for the IFC conceptual data schema and exchange file format for Building Information Model (BIM) data"^^ . "false"^^ . . . "vat" . . . . . . . "ontology" . . . "genomics" . . "subject agnostic" . . . "Registry of programming languages for the Linguist program for detecting and highlighting programming languages."^^ . "false"^^ . "gene expression" . . . . . "false"^^ . . . . . "udsaes.fmi" . . . . . . "bdsc" . . "false"^^ . . . "https://catalog.hathitrust.org/Record/$1"^^ . "IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers."^^ . "Antibody Registry" . "ANF00001"^^ . . . "239287"^^ . . "seon" . "disease" . . . . . . "https://bioregistry.io/pscdb:"^^ . . . . . . . "http://scipion.i2pc.es/ontology/CRYOEM_$1"^^ . "false"^^ . "^\\d+\\w?$"^^ . . . "https://www.ensembl.org/id/$1"^^ . . . . "chemistry" . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . "gene superfamily classification" . "mirtarbase" . . . . "https://purl.brain-bican.org/ontology/dhbao/DHBA_$1"^^ . "transgenic" . . "0000390"^^ . . . . "Alkane"^^ . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . . "region" . "VEG-03D"^^ . "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic."^^ . "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task="^^ . . . . "infection process" . "false"^^ . "drugbank.category" . . "electronic health record" . . . . "false"^^ . "An anatomical and developmental ontology for cephalopods"^^ . . . "false"^^ . "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1"^^ . . "https://w3id.org/dpv#"^^ . "component"^^ . "proteomics" . . . "social sciences" . . "zobodat.taxon" . "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." . . . "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene."^^ . "Reactions in drugbank"^^ . "^FCB\\d{3}$"^^ . "protein structure" . "^\\d+$"^^ . "snp" . . . . . "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available."^^ . . "Cell line collections (Providers)"^^ . . . . _:N4826147570014fc7b79578d497846317 . . . "CABI Digital Library" . . . . "Melissa Haendel" . . . . . . . "CGH Data Base" . "prediction" . . . "Chemspider" . . "CORDIS organization" . . . . . . "soil" . . "japanese population" . . "The Woody Plant Ontology lists reference variables used for experimentations and observations on woody plants (forest trees and shrubs, and possibly fruit trees). It is an international initiative based on various communities (French, Portuguese and European). Terms are collected from various sources and organized following the Crop Ontology standard which provides harmonized variables composed by a triplet: (i) a trait, the studied character, (ii) a method, the measurement protocol and (iii) a scale, the unit of measurement or scoring scale."^^ . "kater@ngi.msstate.edu" . "biomedical science" . . "This ontology captures several types of explanation that occur in the literature on explainable machine learning, Bayesian networks and rule-based expert systems. Each explanation consists of an explanandum (that which has to be explained) and an explanans (the part that performs the explaining the explanandum). The explanandum is usually just a fact, or more generally an event. The explanans can take multiple forms: set of facts combined with a rule, a set of important features, a prototype, etc, or a combination of those. (from ontology)"^^ . "https://cohesindb.iqb.u-tokyo.ac.jp/browsepeak/eachpeak/"^^ . . "life cycle stage" . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Activity" . "ontology" . . "The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format."^^ . . . . "ontology" . . . . "Core organization ontology" . "cell lines" . . . "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx)." . "http://kif.cs.lth.se/ontologies/rosetta.owl#"^^ . "hasPhenomena"^^ . . . "mat" . . . "0000295"^^ . "cjeffery@uic.edu" . "mapping_justification"^^ . . . . . . "EMAPA_RETIRED" . . . . "environmental contaminant" . . . . "polypeptide region" . . "http://sweetontology.net/phenAtmo/"^^ . "geography" . . . . "UNESCOTHES" . . "p001"^^ . . . "https://biofactoid.org/document/$1"^^ . "false"^^ . . "phenomena" . "funcbase.mouse" . . "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours."^^ . . . "human health" . . . "http://purl.obolibrary.org/obo/VSMO_$1"^^ . . "sequence" . . "belongsTo"^^ . . "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1"^^ . "co_366" . . "ess" . . . "https://www.cytion.com/$1"^^ . "jason.stajich@ucr.edu" . . . . "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies."^^ . . "3d structure" . "MassBank" . . . "digital planning and construction" . . "biotools" . "5"^^ . . . "reaction data" . "structure" . "false"^^ . "isotope" . . "https://vocab.lincsproject.ca/Skosmos/$1"^^ . . "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$"^^ . "^\\d{7}$"^^ . . "false"^^ . . "false"^^ . . "state energy flux" . . "pathway" . "gene name" . . "^\\w+$"^^ . "disorders" . . . . . . "gene expression" . . . . "Genetic Testing Registry Tests" . "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata."^^ . . . . . . . . . . . . "http://iirds.tekom.de/iirds/domain/software#"^^ . . . . "https://www.sharkipedia.org/traits/"^^ . "https://bacdive.dsmz.de/strain/$1"^^ . . "The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations."^^ . "25782"^^ . "^C\\d+$"^^ . . . "doid" . "DASHR expression" . . . . . "http://sweetontology.net/realmGeolContinental/"^^ . "SWEET Ontology Phenomena Mixing" . . "nici@cos.io" . . "http://www.w3.org/ns/ssn/"^^ . . . "emotion process" . "Pfam protein clan" . "https://omim.org/MIM:"^^ . . . "SpliceNest" . "Chris Sander" . "phenomena" . "^\\w+$"^^ . . "HWUPKR0MPOU8FGXBT394"^^ . . . "GLDS-141"^^ . . . . . "whole plant development stage" . "https://www.genome.jp/virushostdb/"^^ . . "Pierre-Marie Allard" . . "ontology" . . "https://data.nist.gov/od/dm/nmrr/vocab/?tema="^^ . "false"^^ . "proteomic databases" . . "false"^^ . . . . . "http://purl.allotrope.org/ontologies/"^^ . "hrehm@mgh.harvard.edu" . "dna" . . . "sostb" . "molecules" . . "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/"^^ . "sickle cell disease" . "true"^^ . "ontology" . . . . "^\\d{7}$"^^ . . "ontology" . "sequence databases" . "^SLCTR/\\d{4}/\\d+$"^^ . . "realm" . . "Livestock Product Trait Ontology" . "http://sweetontology.net/realm/"^^ . "hgnc" . "Genome assembly database - RefSeq accessions" . "deoxyribonucleic acid" . . . . . . . . . "civic.assertion" . "docbias" . . . "sweet.stsl" . "VOAF is a vocabulary specification providing elements allowing the description of vocabularies (RDFS vocabularies or OWL ontologies) used in the Linked Data Cloud. In particular it provides properties expressing the different ways such vocabularies can rely on, extend, specify, annotate or otherwise link to each other. It relies itself on Dublin Core and voiD. The name of the vocabulary makes an explicit reference to FOAF because VOAF can be used to define networks of vocabularies in a way similar to the one FOAF is used to define networks of people. [from homepage]"^^ . "0000108"^^ . . "https://www.iedb.org/mhc/$1"^^ . . . . "false"^^ . . . . . "0000002"^^ . "genome annotation" . "identifier for a species, in the AmphibiaWeb database"^^ . "structural biology" . "hpc" . . . "0000020"^^ . . "http://schema.mobivoc.org/#"^^ . "protein" . . "https://www.ebi.ac.uk/interpro/set/pfam/$1"^^ . . . . "http://sweetontology.net/matrInstrument/$1"^^ . . . "chemistry" . . . "http://purl.obolibrary.org/obo/TTO_$1"^^ . . . "The FIESTA-IoT ontology takes inspiration from the well-known Noy et al. methodology for reusing and interconnecting existing ontologies. To build the ontology, we leverage a number of core concepts from various mainstream ontologies and taxonomies, such as Semantic Sensor Network (SSN), M3-lite (a lite version of M3 ontology), WGS84, IoT-lite, Time, and DUL ontology."^^ . . . . . "ontology" . . . . . . . "educational resources" . "diagnosis" . "Microbial Conditions Ontology" . _:Ne8ec8e36980f43e18553e88cff205c68 "William Klimke" . "representation data servcie analysis" . . "https://cropontology.org/rdf/CO_359:"^^ . "zebrafish" . . "Porifera Ontology" . . . "http://sweetontology.net/reprTimeSeason/"^^ . . "An ontology of biodiversity of INPA"^^ . . "ena.embl" . . . . . . . "snodb" . . "https://cmecscatalog.org/cmecs/classification/unit/$1.html"^^ . . . . . "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."^^ . . "ontology" . "false"^^ . . . . "gobpid" . "Carlos Oscar S. Sorzano" . . . . . "life science" . . "nfdi4ing" . . . . "http://purl.obolibrary.org/obo/ECAO_"^^ . "false"^^ . . . . "https://e-cyanobacterium.org/bcs/rule/"^^ . "9-1-1 Complex"^^ . . . "genetics" . "https://radlex.org/RID/$1"^^ . . . "false"^^ . . "https://www.google.com/patents/$1"^^ . . "https://www.tib.eu/digitrubber#DIGITRUBBER_$1"^^ . . . "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to curation records that collect information extracted from specific publications."^^ . . "false"^^ . . . . . . "http://sweetontology.net/relaProvenance/$1"^^ . . "population dynamics" . "false"^^ . "^\\d{7}$"^^ . . "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line="^^ . . . . "cl3603"^^ . "algorithm" . "atfdb.family" . "protein" . . . . . "biodivthes" . "true"^^ . "46946"^^ . . . . "panet" . . "hms.lincs.dataset" . . "Mingxun Wang" . "pathway" . . . . . . "panther" . . . . . . . "pathway" . "deims.taxonomy" . . . "nfportal.tool" . "https://cellmodelpassports.sanger.ac.uk/passports/"^^ . . "^\\d+$"^^ . . "clinical studies" . "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality."^^ . . . "skosmos" . "false"^^ . . . "doco" . . "Mobilome Ontology" . "https://stemcells.nindsgenetics.org?line="^^ . . "genome/gene" . . "expressed sequence tag" . "false"^^ . . "dna" . "atomic coordinate" . "https://suprabank.org/additives/$1"^^ . "http://www.w3.org/ns/earl#$1"^^ . "Crates.io" . . . "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded"^^ . "paperCount"^^ . "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI)"^^ . "ISTransbase" . . "clinvar" . . . "phenotype" . . . "genomics" . . "COI Catalogue is a herbarium with c. 800.000 specimens, organised in separate collections due to the research priorities over the years."^^ . . "environmental control" . . "12300"^^ . "protein" . . . _:Nb784c6d0fea240aa8583ce7c471bf224 "Paolo Ciccarese" . "sophgv" . . "lei" . . . . . "https://fda.report/applications/$1"^^ . "Altostratus"^^ . "true"^^ . . . "Decentralized Identifier" . "w3" . "DBPedia Ontology" . . "lincs.cell" . "https://www.nfdi.de/wp-content/uploads/2021/12/nfdi4microbiota_Logo_.png"^^ . "VMH reaction" . . "sorepm" . . . "nicolas.matentzoglu@gmail.com" . . "Electron Microscopy Data Bank" . . . "The European Bank for induced pluripotent Stem Cells (EBiSC) is a centralised, not-for-profit iPSC bank providing researchers across academia and industry with access to scalable, cost-efficient and consistent, high quality iPSC lines and derived products for new medicines development."^^ . "pakk@rothamsted.ac.uk" . . . . "human geography" . "Semantically-Interlinked Online Communities Types Ontology" . . "interaction/pathway" . . . . . . . . "H-InvDb Protein" . . . . . . . . . "^\\d{7}$"^^ . . "Dynamic Ecological Information Management System - Site and dataset registry" . . "biomedical science" . . "true"^^ . . . . "gwascentral.phenotype" . "C0026339"^^ . "protocol" . . . . "life science" . . . . . "http://sweetontology.net/propSpace/$1"^^ . "iot" . . . . "palayoor.n@northeastern.edu" . "D.Schomburg@tu-braunschweig.de" . . "false"^^ . . . "http://www.bindingdb.org/rwd/entry/"^^ . "2004-2820"^^ . . "protein" . . . . . . . . . "genecards" . . "pns12@hermes.cam.ac.uk" . "https://metazoa.ensembl.org/id/$1"^^ . . "rna" . "img.gene" . "disorders" . "easychair.cfp" . . . "anatomy" . . "^\\d{8}$"^^ . . "CHEBI" . "RepeatsDB Protein" . . "Florian Thiery" . "npm" . . . "false"^^ . . . . "^\\w+$"^^ . "false"^^ . . "false"^^ . . "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"^^ . . . . "^\\d{7}$"^^ . "false"^^ . "http://www.moonlightingproteins.org/protein_detail/?mpid=$1"^^ . . . . . . . "expression data" . . . . . . "http://crdd.osdd.net/raghava/hemolytik/display_sub.php?details="^^ . "lncipedia" . . "^\\S+$"^^ . . _:Naa05587a90ac481cb05cfe40d728c4ae "patrick.le-boeuf@bnf.fr" . . . . "nmrxiv" . "SNOWMEDCT" . . . . . "Analyses of microbiome data within MGnify"^^ . "6b1"^^ . . . . "^\\d+$"^^ . . . "https://bioregistry.io/kim.conditionsofaccess:"^^ . . . . "Ontology for manufacturing and logistics"^^ . "dna sequence" . . . . . "David N. Orloff" . . "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution."^^ . "organism" . . . "322"^^ . "false"^^ . "false"^^ . . "molecular biology" . . . "organism-specific databases" . . . . . "protonet.cluster" . . . . . "Groundnut Ontology" . . "chemfont.chemical" . . . . "david.linke@catalysis.de" . . "Functional Requirements for Bibliographic Records" . "false"^^ . "ontology" . . . "The COVID-19 epidemiology and monitoring ontology" . "false"^^ . "1200"^^ . . "metnetdb" . . "^M\\d{4}$"^^ . . . "Hölzel Diagnostika" . "http://www.opengis.net/def/rule/geosparql/$1"^^ . . . "European Genome-phenome Archive Study" . "The standard reference for nomenclature and diagnostic criteria in toxicologic pathology."^^ . "structural biology" . . "hgnc.family" . "asrp" . . . . . . . . . . . "CORDIS Legal Basis" . "^[0-9]{8}$"^^ . . "allotrope.equipment" . . . . . . "dragondb" . . "^EG\\d+$"^^ . "false"^^ . "http://purl.obolibrary.org/obo/ICO_$1"^^ . . . . "http://purl.obolibrary.org/obo/STATO_"^^ . "metabolite" . "adverse reaction" . "http://purl.obolibrary.org/obo/AGRO_"^^ . . "https://data.gesis.org/gesiskg/schema/$1"^^ . "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank."^^ . . . "RSNA Informatics RadLex" . . "false"^^ . . . "mutation" . "Eric P. Nawrocki" . "ontology" . "http://vocabularies.wikipathways.org/gpml#"^^ . "https://data.chembiosys.de/strains/"^^ . "PMC" . . "fair" . . "uniprot.resource" . "false"^^ . "experimentally determined" . . . . . . . "Annotated Regulatory Binding Sites" . "Competence Ontology" . "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1"^^ . . . "species" . . . . _:N9cee0ca52bc5483781fac86bf2192e7d . . "SMID-DB" . . "ontology" . . . "panther.pathway" . "https://www.thaiclinicaltrials.org/show/$1"^^ . . "Metabolic Network Exchange Database" . "spectra (samples) in the nmrXiv database"^^ . . . "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:"^^ . "Martin Wagner" . . . "false"^^ . . . . "environment" . . . . . . . "false"^^ . . . . "National Uniform Claim Committee Characteristic" . . . "genome" . "false"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process"^^ . . "omics" . "http://vita.mbc.nctu.edu.tw/search.php?acc=$1"^^ . "false"^^ . "false"^^ . . . "text mining" . . . "https://www.eionet.europa.eu/gemet/en/group/$1"^^ . . "Resource"^^ . . . . . . . "material science" . . "phenotype" . . "https://www.kegg.jp/entry/"^^ . . . "http://rs.tdwg.org/ontology/voc/TaxonRank#$1"^^ . . . "sequence" . . . "cdna/est" . . "0221"^^ . . "jaxmice" . . "pubchem" . "CHEBI" . . . . . . "nfdi4ing" . "https://cropontology.org/rdf/CO_346:$1"^^ . "https://ssbd.riken.jp/database/project/"^^ . . "Creative Biolabs Protein provides identifiers for protein-related entities, including therapeutic proteins, proteolytic enzymes, antibody-like scaffold proteins, soluble T cell receptors, and tetramers."^^ . "phenotype" . . . . . "other subjects" . . . . . "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$"^^ . "BaseFlow"^^ . . . "miriam" . "Identifiers.org Ontology" . . "Juan Jose Medina Reyes" . "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . "materials" . . "Casemates" . "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes"^^ . "SNR17A"^^ . . "SWEET Ontology Phenomena Hydrosphere" . . . . "Dan Brickley" . "codelink" . . . "pharmgkb" . . . "false"^^ . . . "life sciences, biology" . . . . . . . . . . . "kim.hochschulfaechersystematik" . "^(\\d+)|([a-zA-Z_]+)$"^^ . _:N68804ee39d7d4d4b89d2c0f48e0968a1 "Publications Office of the European Union" . . . . "organism-specific databases" . "^\\d{7}$"^^ . "Angela Kranz" . . "ElNino"^^ . . "264"^^ . "gene expression" . . . "https://bioportal.bioontology.org/" . . "zobodat.person" . . . . "http://sweetontology.net/stateSystem/"^^ . _:Nee4318f0ea924f6f83eba1a029159dcd . . . . "Influenza Virus Database" . . . . . "geno" . "si.kcdb" . . . "FBcv" . "false"^^ . "Simplified molecular-input line-entry system" . . . "BioSystems" . . "malaria" . "[PID4NFDI](https://pid.services.base4nfdi.de) is a Base4NFDI service that provides documentation about a small number of well-known identifier schemes (e.g., DOI) and services for registering identifiers within them (e.g., DataCite). This collection reflects their [PID Providers](https://pid.services.base4nfdi.de/get-pid/providers/) page. This comes with the following caveats:\n\n- Crossref and DataCite are services that mint DOIs. Since DOIs are the identifier space, only `doi` appears in this collection.\n- ePIC is a service that mints Handle system. Since Handles are the identifier space, only `hdl` appears in this collection\n- PIDINST is an abstraction on top of DataCite / ePIC, which is covered by `doi` and `hdl` as described above" . . "http://classyfire.wishartlab.com/tax_nodes/C"^^ . "^\\d+$"^^ . "clarin.concept" . "http://www.tdwg.org/standards/642$1"^^ . . . "^[1-9]\\d{0,6}$"^^ . "^.*/.*$"^^ . "false"^^ . "cell" . "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1"^^ . "Saccharomyces cerevisiae promoter database" . "Nathan Baker" . . . "false"^^ . "An ontology to describe legislation, based on the FRBR model, that encodes the ELI metadata fields."^^ . . "^PACTR\\d+$"^^ . . . "^\\d+$"^^ . . . . "https://app.knetminer.com/genepage/"^^ . . . "ontology" . . "http://www.w3.org/2002/12/cal/icaltzd#$1"^^ . "bibliography/documents" . "biology" . "SNOMED" . "earth sciences" . . . "esldb" . . "subject agnostic" . . . . . "http://purl.obolibrary.org/obo/VHOG_$1"^^ . . "893"^^ . "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1"^^ . . _:N48031e6e411641c0bec684d51808fa27 "Maxime Lefrançois" . . . "civic.fid" . "http://purl.obolibrary.org/obo/FBcv_"^^ . "UBERON Issue Tracker" . "Tianyi Zhao" . . "genetic variation" . "^\\d+$"^^ . . . . . . "population genetics" . . "ega.study" . "https://ceds.ed.gov/element/"^^ . . "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis." . . "true"^^ . . "childhood cancer" . "Wojciech M. Karlowski" . "DisProt" . . . . . . "cheminformatics" . "hl7.v3codesystem" . . . "false"^^ . "portal" . "industry" . . . "ADM1"^^ . "1"^^ . . . . . "https://dialnet.unirioja.es/servlet/articulo?codigo=$1"^^ . . "https://www.ebi.ac.uk/chembl/explore/tissue/$1"^^ . "false"^^ . "false"^^ . "0MYA"^^ . "biology" . . . . "493771"^^ . . . "^[0-9]+$"^^ . . . _:N4dc1f59566be4170b82e53645c11deee "d.fichtmueller@bgbm.org" . "^[1-9]\\d{0,7}-[123]$"^^ . . "Pierre Grenon" . . . "http://sweetontology.net/reprMathFunction/$1"^^ . . . . "0000000"^^ . . . . "ontology" . "false"^^ . . "sweet.repsu" . . "animal physiology" . . "false"^^ . "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections."^^ . "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/"^^ . . . . "http://purl.obolibrary.org/obo/OGSF_"^^ . "genome" . "Jörg Stülke" . . "life science" . . . . . "taxonomy" . "false"^^ . . . . "spar" . "umls.aui" . . . . . . . . "^\\d+$"^^ . . . . . . . . . . "^[A-Za-z]+\\/[0-9]+$"^^ . . "Benjamin Zapilko" . . "protein domain" . . "Cell line databases/resources"^^ . "omics" . . . . "false"^^ . "history" . . "engineering" . . . "life science" . "http://www.gramene.org/db/protein/protein_search?protein_id="^^ . "AccelerationStateValue"^^ . "disease" . . . . "false"^^ . "^\\d+$"^^ . "icdom:8500_3"^^ . . . . . . "Epilepsy and Seizure Ontology" . "agriculture" . . . "false"^^ . . "genetic variation" . . . "proteomics" . . . . . "subject" . "false"^^ . . "true"^^ . . "^[A-Za-z_0-9]+$"^^ . "p.buttigieg@gmail.com" . . "compound" . "cell culture" . . . "mirna target site" . . "mardi" . "http://purl.org/dcx/lrmi-vocabs/interactivityType/"^^ . . "portal" . "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_"^^ . . . . . "https://www.scopus.com/affil/profile.uri?afid=$1"^^ . . . . "An Ontology for Units of Measure" . "http://www.ontology-of-units-of-measure.org/resource/om-2/$1"^^ . "false"^^ . "nrfc" . "false"^^ . . . . . "https://books.google.com/books?id=$1"^^ . "^\\d{7}$"^^ . . . "false"^^ . . "DEF"^^ . . . . "Matthias König" . "SWEET Ontology Material Plant" . "iceberg.ice" . . "false"^^ . . "https://portal.hubmapconsortium.org/browse/collection/$1"^^ . "_fe65f286"^^ . . . "SWEET Ontology Representation Time Day" . . . " http://edamontology.org" . . . "dashr" . . . . . . . "https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md"^^ . "https://cropontology.org/rdf/CO_347:"^^ . . "^G\\d+$"^^ . "kim.schulfaecher" . . . "^\\d+$"^^ . . . . "Space Life Sciences Ontology" . . . . "snorna-protein" . . . "Mouse Genome Informatics" . . "neurobiology" . . . "Omar S. Harb" . . . . . . . . "^\\d+$"^^ . . "clinvar.record" . "Sucharitha Balu" . "MarFun is manually curated database for marine fungi which is a part of the MAR databases."^^ . . . . "SRX000007"^^ . "sequencing assay" . "sequence" . . . "https://schema.coypu.org/gta#"^^ . "51"^^ . . . . . "Qualification Ontology" . . . "^\\w+$"^^ . . "The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO."^^ . . . . _:N25ba11211c6b4b1c958701fbcd056faa . "ILMN_129894"^^ . . "http://purl.obolibrary.org/obo/MONDO_"^^ . . . . . "Coronavirus Infectious Disease Ontology" . . . "http://purl.obolibrary.org/obo/ARO_$1"^^ . "Lexicon Model for Ontologies" . . "http://rdfs.org/sioc/swan#"^^ . . "nfdi4chem" . "audience type" . "false"^^ . "human" . "Atif Latif" . "The type attribute of the LIDO Resource Representation element qualifies the digital representation of a resource offered by the data provider for online presentation.\n\nIt is intended to support online services with respect to the reuse of digital resources that are referenced in the LIDO record. The controlled type vocabulary allows data providers to indicate which variant of a digital resource is described in an instance of the LIDO Resource Representation element. The vocabulary shall support common reuse scenarios such as presenting the digital resource in a search result list, in a detail view, or as downloadable media file. It may also be exploited for retrieval functions such as filtering search results by digital media types.\n\nThe top-level terms are defined to distinguish between the best available variant of a digital resource the data provider can offer for online presentation (provided_representation), the variant a data provider has selected for preview purposes (preview_representation), and the image possibly provided as replacement for the digital resource (placeholder). The definitions of the subordinate terms additionally cover the digital media type. It is highly recommended to use one of the more specific terms, provided_3D, provided_audio, provided_image, provided_text or provided_video, to qualify the media type of the best available variant (or variants in case of equivalent quality), and correspondingly, preview_3D, preview_audio, preview_image, preview_text or preview_video, to distinguish the type of the preview variant (or variants in case of equivalent quality).\n\nNote that these terms do not imply any statement about the quality or format of a digital media file. Therefore, it is recommended to describe the media file in more detail by using the respective LIDO elements and attributes defined for the LIDO Resource Set. As a general recommendation, at a minimum the media file format should be specified by the LIDO formatResource attribute.\n\nDo not confuse the IANA Media Types, formerly known as MIME types, as used for the attribute formatResource with the media type defined as an attribute value for the LIDO Resource Representation element. While the former refers to the type and subtype of the actual media file (e.g., audio/mpeg, image/png, or text/html), the latter differentiates the digital resources by their intended use and generic kind of medium (e.g., provided_audio, preview_image, or provided_text).\n\nThe use of the LIDO Resource Measurement Set may depend on specific use cases of an online service. It is recommended that partners in a data exchange or aggregation context reach an agreement about this.\nThe vocabulary for the type attribute of the LIDO Resource Representation element does not provide terms to designate variants of digital resources with respect to data exchange in the long term preservation context. The vocabulary may be extended, if necessary."^^ . . "false"^^ . "DataCite Name Type" . . . . . _:N6b220d57f28d47fbaa7e0d14942dea9e "Hajo Rijgersberg" . "http://purl.obolibrary.org/obo/TAXRANK_$1"^^ . . . . . . "life science" . "gene" . "fid baudigital" . "protein" . . . . . "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina."^^ . "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam="^^ . . . . . "nemo" . . . "psi-mi" . . "https://rarediseases.org/?p=$1"^^ . . . . "biomedical science" . "genetics" . . "sostp" . "monosaccharides" . "false"^^ . "^[1-9]\\d{0,6}$"^^ . . . "The Dewey Decimal Classification (DDC) system, devised by library pioneer Melvil Dewey in the 1870s and owned by OCLC since 1988, provides a dynamic structure for the organization of library collections. Now in its 23rd edition, and available in print and Web versions, the DDC is the world's most widely used library classification system."^^ . . "jwest@rcsb.rutgers.edu" . "true"^^ . "w3c rec" . . . . "ontology" . . . . . . . "Os01g0883800"^^ . "S6"^^ . "drug" . . . "Cell line collections (Providers)"^^ . "rbk" . . "ChEMBL-Targets" . . "EPOS-DCAT-AP is an extension of the DCAT Application Profile for Research Infrastructures in Environmental and the solid-Earth domains."^^ . "glycoconjugate" . . . . . . "A vocabulary in LOV gathers definitions of a set of classes and properties (together simply called terms of the vocabulary), useful to describe specific types of things, or things in a given domain or industry, or things at large but for a specific usage. Terms of vocabularies also provide the links in linked data, in the above case between a Person and a City. The definitions of terms provided by the vocabularies bring clear semantics to descriptions and links, thanks to the formal language they use (some dialect of RDF such as RDFS or OWL). In short, vocabularies provide the semantic glue enabling Data to become meaningful Data. [from https://lov.linkeddata.es/dataset/lov/about]" . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Health Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Health Consortium members appropriate for maintaining this collection." . "earth sciences" . . "http://scicrunch.org/resolver/SCR_$1"^^ . . "Ontology, part of the SI reference point, covering kinds of quantities."^^ . . "sweet.maem" . . "cgd" . "ontology/terminology/nomenclature" . "https://www.ncbi.nlm.nih.gov/research/cog/pathway/"^^ . . "HemOnc Terminology" . "taxonomic classification" . . "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan."^^ . . "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI."^^ . "ontology" . "International Data Spaces Information Model" . "^RID\\d+$"^^ . . "https://www.iedb.org/assay/"^^ . "diseaseclass" . "datacite" . . "^[A-Za-z]+$"^^ . "ontology" . . . . . "protein"^^ . "^ST[0-9]{6}$"^^ . . . . "si.units" . . "Registry of Research Data Repositories" . . _:N3b6d874ec57440f78448f9ac493db7b6 "Sean Roberts" . . "public health" . . "http://purl.obolibrary.org/obo/UPHENO_"^^ . . . "Fabian Schreiber" . "http://purl.obolibrary.org/obo/PROPREO_"^^ . . . "^\\d{7}$"^^ . "yaron@genecards.org" . . . . "false"^^ . . . . "98"^^ . . . . . . "https://civicdb.org/links/assertions/$1"^^ . . "crossref.funder" . . . . . . "false"^^ . . . "Damion Dooley" . . "ontology" . . "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database."^^ . "metabolomics" . "Database of the dielectric properties of biological tissues."^^ . . "chenyangnutrition@gmail.com" . . . "bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate."^^ . . . "An ontology to capture confidence information about annotations."^^ . "health/disease" . . "SWEET Ontology State Role" . . . "lgai.cede" . "phylogenetics" . . "^\\d+$"^^ . "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue."^^ . . . . "life science" . . "D00166"^^ . . . . . "https://www.commoncoreontologies.org/ont$1"^^ . . . "false"^^ . . . . . "ontology" . "ddi" . . . . "http://sweetontology.net/phenOceanCoastal/"^^ . "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key="^^ . _:Nbd95111e9dcc412b89db3a13f5139311 . "FlyBase Reference Report" . "agriculture" . "life science" . "The AOPO provides classes and relationships for the semantic representation of the Adverse Outcome Pathway framework."^^ . . . "ivan@w3.org" . . "genome" . . "ECOCYC" . . . "biochemistry" . . "https://vocabularies.cessda.eu/vocabulary/ContributorRole?lang=en#code_$1"^^ . . . "false"^^ . "dlx" . "sequence" . . "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . . "Registry and database of bioparts for synthetic biology" . "true"^^ . . "http://sweetontology.net/realmAstroBody/$1"^^ . "nmrXiv sample" . "KEGG BRITE" . "engineering" . . "genetic disorder" . . "life cycle stage" . . "GlycomeDB" . . . "Kelly T. Hughes" . . . "lipid/CHOL"^^ . "PNS12@cam.ac.uk" . "IP" . "life science" . . . . "http://purl.obolibrary.org/obo/MCO_$1"^^ . . . . "https://registry.bio2kg.org" . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Pigeon Pea Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . . . . "general & upper" . "pride" . "This bilingual thesaurus organizes the key concepts of biodiversity sciences, in their basic and applied ecological components. It uses polyhierarchy and includes 818 reciprocal associative relationships. The 1654 French and English descriptors (designating 827 concepts) are enriched with a large number of synonyms (1860) and hidden variants (7020) in both languages. Concepts are grouped into 82 collections, by semantic categories, thematic fields and EBV classes (Essential Biodiversity Variables). Definitions are given with their sources. This resource is aligned with the international thesauri AGROVOC, GEMET (GEneral Multilingual Environmental Thesaurus) and EnvThes (Environmental Thesaurus), as well as with the ontology ENVO (Environment Ontology)."^^ . . . . . . "dc" . . "Ontology for representing systems, models and simulations in RDF."^^ . . "sweet.repsme" . . "https://www.linkedin.com/in/"^^ . "fluid dynamics" . "false"^^ . "^\\d{7}$"^^ . "gene expression" . "^\\d{7}$"^^ . . "bioinformatics" . "differential gene expression profiling" . . "false"^^ . . . . . "^\\w+$"^^ . . "lipid" . . . . "ligand" . "PRJDB3"^^ . "ontology" . "cancer" . . "false"^^ . . . . . . . . . "nih initiative" . "raymond@caltech.edu" . . . . . . . . . . "https://www.inaturalist.org/places/"^^ . "msaier@ucsd.edu" . . "bootstrep" . . "organism" . "http://rs.tdwg.org/acsubtype/"^^ . . "ontology" . "reo" . "spdx.terms" . "http://www.w3.org/2008/05/skos-xl#"^^ . "Motonori Ota" . . . "strendadb" . . "lipidomics" . "https://images.endlessforms.info/collection/"^^ . . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology."^^ . "lattes" . . "0000190"^^ . "http://www.chemspider.com/Chemical-Structure.$1.html"^^ . . "https://florabase.dpaw.wa.gov.au/browse/profile/"^^ . . "ontology" . . . . "false"^^ . . . "A schema for integrating species concepts with species occurrences, gene sequences, images, references and geographical information."^^ . . . "ogi" . . "PLANT REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Pathway annotations are authored by expert biologists, in collaboration with the Reactome editorial staff and cross-referenced to many bioinformatics databases. These include project databases like Gramene, Ensembl, UniProt, ChEBI small molecule databases, PubMed, and Gene Ontology."^^ . . "mathematics" . . "false"^^ . . . . . . "^KIAA\\d{4}$"^^ . "miRBase Families" . . "mgnifygenome" . . . . . . . . . . . . . . . "The Digital Object Identifier System is for identifying content objects in the digital environment."^^ . "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1"^^ . "ontology" . . . "false"^^ . . . . . . . . . _:N010c812f10504bce91b9fa60e6b53a9e . "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks."^^ . . . "The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes."^^ . . . "https://xframework.id/$1"^^ . "covid-19" . . "SASDAX8"^^ . "genome/gene" . . "^\\w{1,3}$"^^ . . "ontology" . . "P23298"^^ . "Locations in DEIMS SDR"^^ . "ontology" . . "plant phenotypes and traits" . . . . "false"^^ . . . "cl" . "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/"^^ . "functional domain" . . "sorelt" . . . . "Teri E Klein" . . "Heidi L. Rehm" . . . "101"^^ . . . . "assay" . "disease" . "biomedical science" . . . "https://go.drugbank.com/metabolites/$1"^^ . . "Cell Markers Ontology" . "1"^^ . . "infection process" . "dna" . . "An ontology supporting data modeling in WikiPathways"^^ . . "SWEET Ontology Property Charge" . . "false"^^ . . "sssom" . . . . . "https://www.fishbase.ca/summary/"^^ . . . . "rna-seq assay" . . "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F"^^ . . . "^\\d{7}$"^^ . "0000002"^^ . . . . "quantitative genetics" . . . . . . . "http://reg.clinicalgenome.org/allele?hgvs=$1"^^ . . . "false"^^ . . "http://sweetontology.net/propOrdinal/"^^ . "the European Hepatitis C Virus Database (euHCVdb, euhcvdb.lyon.inserm.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses."^^ . "computer science" . "transyt" . "ccds" . "false"^^ . "http://crdd.osdd.net/raghava/hemolytik/display_sub.php?details=$1"^^ . "HUGO Gene Nomenclature Committee" . "Vietherb species" . "ontology" . "https://nobias-project.eu/nobias/$1"^^ . . "statistics" . "Tick Cell Biobank" . . . . "The type of contributor of the resource."^^ . . "ontology" . "false"^^ . . . "11303"^^ . . . . "engineering" . . . . . . . "life science" . "^\\d{7}$"^^ . "insdc" . . "https://search.dalia.education/items/$1"^^ . "gesis.rexconcepts" . . "eol.schema" . "A controlled vocabulary to support the study of transcription in the developing mouse brain"^^ . . "^\\d{7}$"^^ . "^C\\d{8}$"^^ . . "Dictybase Gene" . "tccd" . "SWEET Ontology Property Rotation" . . . . "Cardiovascular Disease Ontology" . "false"^^ . . . "botany" . . . . . . . "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00"^^ . . "Japan Registry of Clinical Trials" . . "Adriano Rutz" . "Prefixes relevant for the [Data Literacy Alliance (DALIA)](https://dalia.education/en) project" . . "energy" . "nmrxiv" . . "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds."^^ . . "http://purl.obolibrary.org/obo/HOM_"^^ . . "regulation of gene expression" . . . . . . . "^\\d+$"^^ . . "CSP2005" . . "protein" . "ontology" . "ontology" . . . "This ontology extension was created to address the following need:\n\n- A clear characterization of most common forecasting data. A distinction is needed between point forecasts versus stochastic forecasts, as well as the various ways to express stochastic forecasts. The forecasted data is expressed in terms of time series.\n\nIt reuses the ic-data ontology, which defines timeseries and datapoints that are important elements of forecasting.\n\nIt reuses also the ic-topology ontology, which defines location (geographical but also topological, for example, the gird segment)."^^ . . "hj@uestc.edu.cn" . . . "GlycoNAVI is a website for carbohydrate research. It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools."^^ . . . . . _:N53758a5f8d524f3ba674d46e9d161585 "Albert Goldfain" . "false"^^ . "genomics" . . . . "false"^^ . "4776"^^ . "NIF Standard Ontology" . "ukbiobank.category" . . . . . "linguistics" . "^\\d+$"^^ . . "http://sweetontology.net/rela/"^^ . . "ontology" . . . . . . "K00001"^^ . "CHEBI" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Industrial"^^ . . . . . . . . . "Biological Expression Language" . "Software Package Data Exchange License" . . . "http://purl.obolibrary.org/obo/OBIB_"^^ . . "association" . "The Genetic Testing Registry provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease."^^ . . "host" . . . "vocabularies" . "wot" . . . . "^[A-Z]{2}\\d+$"^^ . "http://www.pathwaycommons.org/pc/record2.do?id="^^ . "human" . . . . "Luis González-Montaña" . . "^PD\\d+$"^^ . . . . . . "project" . . "antitoxin" . . "https://europepmc.org/article/CTX/$1"^^ . . . "false"^^ . "live animal" . "Type of Frequency" . . . "genome" . . . "https://vocabs.acdh.oeaw.ac.at/oeai-cultural-periods/"^^ . "https://vocabularies.cessda.eu/vocabulary/CessdaPersistentIdentifierTypes?lang=en#code_$1"^^ . "engineering" . . "stem cell" . . "mass spectrometry assay" . . . "joshua.adam.klein@gmail.com" . . . . "maxo" . . "natural product" . "http://purl.obolibrary.org/obo/EMRO_$1"^^ . . . "cryosphere" . "ess" . . . "sioc" . . . . . . . . "lido.recordtype" . "false"^^ . "sebastien.moretti@sib.swiss" . . . "finto" . . "structure" . . "FIESTA-IoT Ontology" . "A frontend to Wikidata"^^ . "VirGen" . "adverse reaction" . . "Catalogue of Life in Taiwan" . . "8"^^ . . . . . . . "classification" . . "A sub-registry of the Library of Congress Linked Data Service"^^ . "cancer" . . "brain" . . "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . "mass spectrum" . . "false"^^ . "Jim Balhoff" . . . . "functional genomics" . . . "LexicalMatching"^^ . . "973a9333-fec7-46dd-8eb5-25738f06ee54"^^ . "https://deims.org/activity/$1"^^ . . "fair data spaces" . . . . . . . . "^\\d{7}$"^^ . . . . "panther" . "Benchmark Energy & Geometry Database" . "biology" . . . "^\\d+$"^^ . . . . _:N2ec83c940930489b8614940f2796b176 "dvelotto@uni-bremen.de" . "ontology" . "^\\d+$"^^ . . . "XML Web of Trust Ontology" . . . . . . . . "Phytozome Locus" . . "gene" . . . "ptm databases" . . . "genome" . "anatomy" . "300165/p13898_2106T"^^ . . . "Genre/Form Schemes lists genre/form schemes and assigns a URI to each, enabling users to link controlled terms to the correct scheme. The schemes cover: content types (e.g., text, notated music, cartographic dataset); media types (e.g., device needed to access content); carrier types (e.g., audiocassette, microfiche, online resource); genre types (e.g., biographies, essays, hymns) describing style or intellectual content; and form/physical characteristics (e.g., diaries, directories, journals) indicating material type or structure. Only sources specific to genre/form are included."^^ . "molecular entity" . "3517823"^^ . "5688061"^^ . . . . . "Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world."^^ . . "^PAp[0-9]{8}$"^^ . . "phenotype" . "^[a-zA-Z0-9-_]+$"^^ . "CHEMBL3307800"^^ . "^\\d{4,6}$"^^ . . . "http://purl.obolibrary.org/obo/TXPO_"^^ . . . . . "https://dialnet.unirioja.es/servlet/libro?codigo="^^ . . "ribocentre" . "https://vocabularies.cessda.eu/vocabulary/ContributorRole?lang=en#code_"^^ . . . "false"^^ . . "iresite" . . . . "12345"^^ . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . "articles" . . . . . . . "dna" . . . "false"^^ . . . "geonames" . . . . "^K\\d+$"^^ . "sequence" . . . "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes."^^ . . . "Tabea Tietz" . "npo" . . . "dragondb.dna" . . . . "cdna" . . . . . . . . "false"^^ . . "http://www.rcsb.org/ligand/"^^ . "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/"^^ . "nfdi4ing" . . "^\\d+$"^^ . . . "ontologies" . "Lindsay Cowell" . . "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid="^^ . . . "^\\d+$"^^ . "Smart Energy Domain Ontology" . "https://www.uniprot.org/keywords/"^^ . . . . "Sergio José Rodríguez Méndez" . . "obo" . . "sequence" . "agriculture" . . . . . . . "classification" . . _:Na007fb91a7b64c5c8347dc9647245316 "data@food.gov.uk" . "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc."^^ . . "http://www.genomesize.com/result_species.php?id=$1"^^ . "dblp" . "Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties."^^ . . "https://graphics.endlessforms.info/library?id="^^ . "ontology" . . . . . "false"^^ . . . "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"^^ . . "physiology" . . . "These resources represent software repositories" . "ontology" . . "proteomics" . . . . . . "civic.variant" . . "transcriptomics" . . . . . . "experiment" . "false"^^ . "https://purl.brain-bican.org/ontology/dhbao/DHBA_"^^ . "false"^^ . . . "organism" . . . . "environmental science" . . "deims.dataset" . . "one" . . . "go" . "life science" . . "false"^^ . . . "registry" . . . . "nfdi4cat" . "Pearl Millet Ontology" . "The Data Model Language Controlled Vocabulary was created for NSF's EarthCube Program's Resource Registry. At this point it merely lists a few of the languages used by data model resources in the registry."^^ . . "taxonomy" . "false"^^ . . "ChemFOnt Chemical" . "^\\d+$"^^ . . . "health/disease" . "oncology" . . "phylogenetics" . "SubtiList" . . "http://www.pseudomonas.com/feature/show/?locus_tag=$1"^^ . "phenotype" . "https://cropontology.org/rdf/CO_366:"^^ . "ontology" . "target" . "CropMRespository is a database of soil and crop biophysical process models."^^ . "Swiss National Clinical Trials Portal" . . . . . "false"^^ . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . . "https://ega-archive.org/identifiers/"^^ . "publishing" . "http://www.moonlightingproteins.org/protein_detail/?mpid="^^ . . "false"^^ . "false"^^ . "^\\w+$"^^ . . . "imsr_tac" . "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds."^^ . _:N310bca3efe8040e189eef9dde88e9ffe . . . "00000021"^^ . . . . "LL379-9"^^ . . . . . "Semantically-Interlinked Online Communities, or SIOC, is an attempt to link online community sites, to use Semantic Web technologies to describe the information that communities have about their structure and contents, and to find related information and new connections between content items and other community objects. SIOC is based around the use of machine-readable information provided by these sites."^^ . . . . "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$"^^ . . "animal husbandry" . "study design" . "Evaluation and Report Language" . . . . "biomedical science" . . "Olfactory Receptor Database" . "false"^^ . "molecular_function" . "SNOMEDCT_US_2020_09_01" . "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1"^^ . . . "^\\d{7}$"^^ . "http://stormo.wustl.edu/ScerTF/details/"^^ . . "https://codemeta.github.io/terms/#"^^ . . . "pandit" . . "evolutionary biology" . . . . . "gene expression" . . . "RYYVLZVUVIJVGH-UHFFFAOYSA-N"^^ . . . "co_340" . . "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"^^ . . . "sorepsl" . . "classification" . . "snp" . "http://sweetontology.net/realmGeolOceanic/"^^ . . . . "dron" . . "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page)."^^ . . "false"^^ . "6"^^ . "http://sweetontology.net/reprDataService/"^^ . . . "premis3" . . "pco" . "ontology" . "protein" . . . . . . . . "taxonomic classification" . . "education level" . "sweet.propq" . "http://purl.obolibrary.org/obo/VSAO_"^^ . . "https://biopragmatics.github.io/providers/diseaseclass/$1"^^ . "g.gkoutos@bham.ac.uk" . . "Mark Gerstein" . "http://sweetontology.net/propMassFlux/$1"^^ . . . "SureChEMBL" . . . "communication science" . . "nist" . . . . . "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder."^^ . . . . "true"^^ . . "complexportal" . . . "Structural Classification of Protein - Stable Domain Identifier" . "false"^^ . "http://purl.obolibrary.org/obo/OCCO_"^^ . . "https://pypi.org/project/"^^ . . . "false"^^ . . . . . "molbic.compound" . . "obo" . "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"^^ . . "genome" . . . . "An ontology for description of concepts in the nutritional studies domain."^^ . "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$"^^ . . "Audubon Core uses the terms ac:variant and ac:variantLiteral to provide information about the size, extent, and availability of the Service Access Point of a media item. This controlled vocabulary provides values for those terms."^^ . "classification" . . "sweet.real" . . "molecular interaction" . . . . . "https://bioregistry.io/cnrs:"^^ . "cadsr" . "1691753"^^ . . . "sorepdf" . "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"^^ . "http://uri.gbv.de/terminology/datacite-descriptiontype/$1"^^ . "The Human Metabolome Gene/Protein Database (MGP) of metabolome-related genes and proteins contains data for over 7300 genes and over 15,500 proteins. [from homepage]"^^ . . "Bloomington Drosophila Stock Center" . . . "ontology" . "false"^^ . . . . . . . "protein family/group databases" . . . . . "chebi" . "https://cropontology.org/rdf/CO_320:"^^ . "00000"^^ . "mutation" . "drugbank" . "http://flowrepository.org/id/$1"^^ . "true"^^ . . "false"^^ . . "Sheeba Samuel" . "uniprot" . . . "small molecule" . . . "Google Scholar paper" . . . . "dna" . . . . . "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature."^^ . . "This ontology aims to model the Web of Things domain according to the W3C Interest Group (http://w3c.github.io/wot/)"^^ . . "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md"^^ . . "Method Type Vocabulary" . "ScerTF" . . . "computer science" . "bibliography/documents" . "eroshkin@burnham.org" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind"^^ . "false"^^ . "International Classification of Diseases, 9th Revision, Clinical Modification" . . "false"^^ . . "https://database.factgrid.de/entity/"^^ . "realm" . "proteomics" . . "12"^^ . . . "https://proteininformationresource.org/cgi-bin/show_obci?id=OBCI:$1"^^ . . . . . "Comparative Data Analysis Ontology" . . . "fovt" . . . . "civic.vid" . . . . . . "regulatory ncrna-mediated post-transcriptional gene silencing" . "ontology" . "rna" . "protein structure" . . . . "microbial genetics" . "BiologicalState"^^ . "^\\w+\\_\\d+(\\.\\d+)?$"^^ . . "Ontology of units of Measure" . . . . "https://pharmacodb.ca/cell_lines/$1"^^ . . "false"^^ . "false"^^ . . "Mammalian Phenotype Ontology" . "annotation" . "lam87@cornell.edu" . . . "physiology" . . "StoreDB Study" . . . "subject agnostic" . . . "Rita-Heuser"^^ . . "edcc" . "c.orengo@ucl.ac.uk" . "^\\d+$"^^ . . . "protein-protein interaction" . . . . "false"^^ . . "https://vocabularies.cessda.eu/vocabulary/TypeOfNote?lang=en#code_"^^ . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information."^^ . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Vitis Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "Jennifer C. Giron" . . . "Allan Spradling" . "http://purl.obolibrary.org/obo/MOP_"^^ . "sphn" . . "A vendor of antibodies and other biologics"^^ . . . "AntennaTemperature"^^ . "false"^^ . . . "ontology" . "r.shrestha2@cgiar.org" . . "adolphok@vcu.edu" . "Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera."^^ . . . . . . "http://www.ifomis.org/bfo/1.1/snap#"^^ . . . . . . "false"^^ . . "A molecular entity that condenses, e.g., in a disease, such as ATG condensate"^^ . "biological_process" . "AmphibiaWeb Species" . "rxno" . "^\\d{7}$"^^ . "genome/gene" . "12"^^ . "0000712_1"^^ . . "https://www.cbioportal.org/study/summary?id="^^ . "Identifiers.org Ontology"^^ . . . . "^\\d{7}$"^^ . "metabolic model" . . "protein" . "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$"^^ . . "https://www.zobodat.at/arten.php?id="^^ . . "^[0-9a-z-]+$"^^ . . "obo" . . . "Terminologia Histologica" . "skosmos" . . . . "cellular_component" . . . . . . "CatalogIdentifier"^^ . "Recommendation"^^ . . . . "^\\d+$"^^ . "clinical studies" . . . . "http://purl.obolibrary.org/obo/ZEA_$1"^^ . . "wormbase" . "0002902"^^ . . "An ontology that formalizes the genomic element by defining an upper class genetic interval"^^ . . . "MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for cell lines used in assays measuring molecular bioactivity, linking them to associated compounds and proteins."^^ . . . "informatics" . . . "epilepsy" . . "sorept" . "qudt" . . . "http://purl.obolibrary.org/obo/EMAP_$1"^^ . . "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1"^^ . . . . . . "false"^^ . "SAREF4WEAR: an extension of SAREF for Wearables" . "co_324" . "orfs" . . "false"^^ . . . "^[A-Z0-9]+$"^^ . "FBgn0000015"^^ . . . . _:Nb784c6d0fea240aa8583ce7c471bf224 . . "Lars Eisen" . . "digital curation" . . . "bibliography/documents" . "oeai" . "surechembl" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Thickness"^^ . . . . "http://emmo.info/emmo#EMMO_"^^ . . "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein."^^ . "false"^^ . . . "datacite.contributor" . . "mamo" . . . "4QHKG"^^ . "RepresentativeRole"^^ . . "http://purl.obolibrary.org/obo/FBcv_"^^ . "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E."^^ . . . "protein" . "cas_id" . "https://proteininformationresource.org/cgi-bin/nbrfget?uid="^^ . . "Roger Linington" . . . "nbo" . "ontology" . "false"^^ . . "sequence" . . "https://lipids.fairmd.org/$1"^^ . "false"^^ . . . . . "ontology" . . "skosmos" . "Saccharomyces genome database pathways" . . "^\\d+$"^^ . "false"^^ . . . "^\\d+$"^^ . . "dan5@georgetown.edu" . . . . . . "nfdi4energy" . . "patient care" . "0000210"^^ . "This is a vocabulary for educational sectors as used in the OER World Map (https://oerworldmap.org)"^^ . "1a05"^^ . . "natural science" . . . "http://sweetontology.net/realmLandVolcanic/"^^ . . . "Plant Growth and Development Stage" . "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise."^^ . . . _:N94571b2f8fcd46cdb30a727e0e7d06a4 "Intellectual.PropertyServices@ama-assn.org" . . . "go-term enrichment data" . . . "An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege."^^ . .