"protein-protein interaction databases" . "https://v31.homd.org/genome/genome_description?gid=$1"^^ . . . "1948"^^ . "^\\d+$"^^ . "person" . "osf232097"^^ . "UniPathway Compound" . . "http://purl.obolibrary.org/obo/NBO_"^^ . . "ontology" . . . . . . "genetic disorder" . "ENSGT00550000074763"^^ . "Ontology of the historical German-language nomenclature for offices and professions" . . . . . . . "Starting in the 1950s the International Labour Office has developed an International Standard Classification of Occupations (isco) allowing classification of occupational activities worldwide. Naturally, this system is not intended to deal with historical information. In recent years, a group of historians and sociologists have started to build upon the 1968 version of isco to create a classification scheme for occupational titles in the 19th and early 20th centuries, called hisco (...). It is tailored to cope with historical changes in the production process, and allows storage of information on product and status that could not be accommodated in isco. Large historical databases from which the hisco-data are taken and the international association of historians working on censuses have already agreed to adopt it, an many individual researchers are expected to do so as well.\n\nAltogether, the HISCO scheme was originally based on the coding of the 1,000 most frequent male and female occupational titles in datasets from eight different countries: Belgium, Britain, Canada, France, Germany, the Netherlands, Norway and Sweden. The occupational data which were employed to develop the scheme span the period 1690-1970, but are mostly from the nineteenth century. They contain titles declared by or recorded for people of all ages in parish and civil registration documents. The data used to create HISCO encompass the largest country in western Europe, the world’s first industrial nation, the two most influential of the Scandinavian territories, and a newly-settled region of French-Canada. This, and an emphasis on variations within economies in sampling design, ensures that they provide a good mix of agricultural, industrial and commercial activities, of old and new technologies, of traditional and modern forms of organization. Moreover, the inclusion of two French-speaking populations, and a further region in which the official language was French, provides an effective test of the HISCO scheme’s sensitivity to the relationship between language and meaning. Nevertheless, the scheme is currently limited in coverage to the Northern European and Atlantic economies. Future development of the scheme will broaden its scope. To this end, the coding of new data into HISCO is being undertaken in several other countries.\n\nThe History of Work Information System has a coding section that helps users code their data in HISCO, and thus both make it comparable to other datasets, and make it of use to other scholars. The Provenance file lists all contributors to the HISCO-database."^^ . "3d structure" . "https://s3.us-east-2.amazonaws.com/lg.cede/$1"^^ . . . "false"^^ . "false"^^ . "holofood.sample" . "mapping_justification"^^ . . . "Klassifikation für interdisziplinäre Forschungsfelder im Rahmen des Kerndatensatz Forschung"^^ . "false"^^ . . "VH0006"^^ . . . . "Web Annotation Ontology" . . . "agronomy" . . . "CORDIS organization" . . . "Animal TFDB Family" . . . . . . . "kinetics" . . . . . "eurofir" . . . . "experimental measurement" . "The Category Scheme Election Studies provides the ability to categorize election studies at the question and/or variable level."^^ . . . "https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomydetail?id=$1"^^ . "classification" . . . . "P683" . . "The SPARC Data Repository Service (DRS) is an implementation of the Global Alliance for Genomics and Health (GA4GH) DRS specification that provides a standardized API that enables researchers and other data consumers to access and retrieve data objects from various data repositories in a consistent and cloud-agnostic way. This implementation provides information for data objects in the SPARC repository (sparc.science)."^^ . . . . . "https://w3id.org/skgo/modsci#$1"^^ . "obo" . "oai:cwi.nl:4725"^^ . . "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources."^^ . . . "https://terminology.fraunhofer.de/voc/bau#"^^ . "Subcellular Anatomy Ontology" . "3d structure" . . . . . . . . . . . . . . "Anthromes"^^ . "drug report" . . . . . . "phenomena" . . "fanta" . . . . "^[A-Z]+[0-9]+(\\.\\d+)?$"^^ . . . "wot.td" . "^(\\d{4}\\.\\d{2}\\.\\d{2}\\.)?\\d{6,8}(v\\d{1,3})?$"^^ . . . "ontology/terminology/nomenclature" . "https://identifiers.org/$1:$2" . . "http://ecoinformatics.org/oboe/oboe.1.2/oboe-standards.owl"^^ . . . . . . "vto" . . "http://synbip.idrblab.net/data/bts/details/$1"^^ . . "virushostdb" . "sweet.stef" . "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments."^^ . . . "https://rrid.site" . . "genome" . "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"^^ . . . "http://www.iec.ch/TC57/CIM#$1"^^ . . . . "false"^^ . . "10001-101"^^ . . "ontology" . "https://www.eionet.europa.eu/gemet/en/theme/"^^ . "https://w3id.org/citedcat-ap/"^^ . . . . "051"^^ . . "interpro" . . . "0000236"^^ . . . . . . "SWEET Ontology Phenomena Fluid Instability" . "bioresource" . . "http://sweetontology.net/propQuantity/"^^ . "Animal Genome Chicken QTL" . "http://purl.obolibrary.org/obo/MPIO_"^^ . . "sweet.phsy" . "Leafsnap" . . "This bilingual thesaurus organizes the key concepts of biodiversity sciences, in their basic and applied ecological components. It uses polyhierarchy and includes 818 reciprocal associative relationships. The 1654 French and English descriptors (designating 827 concepts) are enriched with a large number of synonyms (1860) and hidden variants (7020) in both languages. Concepts are grouped into 82 collections, by semantic categories, thematic fields and EBV classes (Essential Biodiversity Variables). Definitions are given with their sources. This resource is aligned with the international thesauri AGROVOC, GEMET (GEneral Multilingual Environmental Thesaurus) and EnvThes (Environmental Thesaurus), as well as with the ontology ENVO (Environment Ontology)."^^ . "ontology" . "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver."^^ . . . "false"^^ . . . . . "false"^^ . . . . . . . . "OMA Protein" . "Immune Epitope Database Receptors" . "gene" . "Ontology, part of the SI Reference Point, covering the historical decisions of the BIPM concerning measurement units."^^ . "http://elm.eu.org/elms/elmPages/$1.html"^^ . "bold.taxonomy" . . . "SWEET Ontology Realm Landform" . . "false"^^ . . "metabolite" . "agriculture" . . . . . "anatomy" . . "http://www.kegg.jp/entry/"^^ . "We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)"^^ . "ontology" . . . . "unique identifiers" . . . "Software/Package"^^ . . . . . "http://dicom.nema.org/resources/ontology/DCM/$1"^^ . . . "An ontology for non-coding RNA, both of biological origin, and engineered."^^ . . . . "^\\w+$"^^ . . . . . "RNAloops" . "bibliography/documents" . . . "^[1-9]\\d{0,11}$"^^ . . . . "KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns."^^ . . "meddra" . . . "odor" . . . "^\\d{7}$"^^ . . . "image/movie" . . . . "FMU"^^ . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . "0000728"^^ . . . . . . "^\\d{7}$"^^ . "massbank" . . "false"^^ . "SWEET Ontology State Realm" . "dna" . . "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure"^^ . _:N24d4866042c24d8eb1c14481f308d341 . . . . . . . "false"^^ . "Type of Address" . "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN"^^ . . . . . "NIF Standard Ontology: OEN Terms in Neurolex" . . . "ontology" . "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code="^^ . . . "organism-specific databases" . . . . . "plant phenotypes and traits" . "CGNC" . "https://euclinicaltrials.eu/app/#/view/$1"^^ . . . . "false"^^ . . . "http://sweetontology.net/propQuantity/$1"^^ . "https://github.com/$1"^^ . "gavin.thomas@york.ac.uk" . "https://gov.genealogy.net/item/show/object_"^^ . . . "false"^^ . "drug sensitivity" . _:N8edb42b757ee4845996b3b75eb0af651 . "environmental science" . "antweb" . . _:Ne800fdfb6d1d4197918a9ed59194f72e "UK Food Standard Agency" . . "kim.license" . "https://www.internationalgenome.org/data-portal/sample/$1"^^ . . "http://purl.bioontology.org/ontology/VANDF/"^^ . . . . . . "Antumbra"^^ . "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)."^^ . "protein" . "A gene in the Pathogen-Host Interaction Database"^^ . . "^\\d{7}$"^^ . "International Traditional Medicine Clinical Trial Registry" . "ICD10WHO" . "reaction" . "Cell line collections (Providers)"^^ . "false"^^ . . . "dna" . "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1"^^ . . . . . "ddc" . . "unit" . "Nikos C. Kyrpides" . "expression" . . "https://www.storedb.org/?$1"^^ . . "00000098"^^ . . . . . "false"^^ . . "http://sweetontology.net/relaSpace/$1"^^ . . . "merckindex.reaction" . . "ISO 15926-14" . "Gene2Phenotype" . "Mirjam Stappel" . "ontology" . "state time geologic" . . "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm"^^ . . . . "false"^^ . . "protein" . . . . . "0000449"^^ . . . . . "X58356"^^ . . . . . . . . . . . "false"^^ . . . "sequence" . "ligandbox" . "SWEET Ontology Material Water" . "GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform."^^ . "^[0-9]+$"^^ . . "Lexicon of properties and values that can be used in InfoFlora APIs."^^ . . . . . . "The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]"^^ . . "http://www.case.edu/EpilepsyOntology.owl#"^^ . . "Kingdom Ontology" . . "Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts. Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys."^^ . . "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line="^^ . "https://mgtbind.pkumdl.cn/complex/$1"^^ . "ncbibook" . . . . . "family and domain databases" . . . "dna" . . "Genotype-Tissue Expression" . . "cohesindb.loops" . . . . "protein" . "H3.03.00.0.00007"^^ . "repository" . . . "false"^^ . "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . . . . "^MAR\\d{5}$"^^ . "Sheeba Samuel" . "health/disease" . . . "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)."^^ . . "nfdi4energy" . "^H\\d\\.\\d{2}\\.\\d{2}\\.\\d\\.\\d{5}$"^^ . "life science" . . "sweet.proptf" . . . "https://biolink.github.io/biolink-model/$1"^^ . . "http://purl.obolibrary.org/obo/SWO_"^^ . "AlternateName"^^ . "^(bmr|bmse|bmst)?[0-9]{1,6}$"^^ . . . . . "12929"^^ . "mouse" . "https://bugguide.net/node/view/$1"^^ . . . . . . "dna" . "0000001"^^ . . . "ASCII"^^ . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/"^^ . . "maya.schuldiner@weizmann.ac.il" . . . "^ECMDB\\d+$"^^ . . "447860"^^ . "false"^^ . . "^\\d+$"^^ . . . . . . . . . "The LifeWatch ERIC repository of semantic resources for the ecological domain." . "John-Marc Chandonia" . "BCRC Strain Collection Catalog" . "obo" . . "materials informatics" . . . . . "false"^^ . "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates."^^ . "Neil D Rawlings" . . . "http://purl.obolibrary.org/obo/FIDEO_"^^ . . . "DDB0016567"^^ . "Protein Structural Change Database" . "AB016785"^^ . . . . . . . "dictyBase Expressed Sequence Tag" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Commerce"^^ . . . "cosmic.gene" . . . "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . "http://sweetontology.net/relaTime/"^^ . "http://hdl.handle.net/"^^ . . "http://europepmc.org/articles/"^^ . . "sweet.hukd" . . . . "interaction/pathway" . . "gene" . . . "ESCO Ontology" . . . . . . . . . . "rna" . "https://cannabisdatabase.ca/compounds/CDB$1"^^ . "false"^^ . . . "^Q\\d+$"^^ . . . . "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$"^^ . "compound" . . . "http://purl.obolibrary.org/obo/OGMS_$1"^^ . "false"^^ . . . . . . . . . . . "surechembl" . . . "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo="^^ . . . . . . . . "unipathway" . . . "https://purl.brain-bican.org/ontology/hbao/HBA_$1"^^ . . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra."^^ . "estdab" . . . . . . . "DCAT-AP conversion to LinkML Schema" . "transgenic" . . . . . . "00000021"^^ . . "ontology" . "Identifiers.org Ontology" . "^DRSC\\d+$"^^ . . . "emolecules" . . . . "^IRCT\\d+N\\d+$"^^ . "604090889"^^ . . . "NLXCELL" . "image/movie" . . . . "ClinGen Curation" . . . "economics" . "umbbd.compound" . . "Global Natural Products Social Molecular Networking Task" . "gepris" . . . "polbase" . "allotrope.role" . . "false"^^ . . . "https://mardi4nfdi.de/mathmoddb#$1"^^ . . "icd11.foundation" . "PANTHER Pathway Component" . . "asteraceaegd.genome" . "1242"^^ . "http://sweetontology.net/relaChemical/$1"^^ . . "no_login"^^ . . "00001"^^ . . . . "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id="^^ . . . "db-object-id"^^ . . "Integbio Database Catalog provides whereabouts information (URL), database description, biological species and other attributes (metadata) of Japanese and international life science databases to make it easier for users to find databases they need. This catalog has been developed as a part of the integration of life science databases promoted by four ministries in Japan: the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor, and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF), and the Ministry of Economy, Trade, and Industry of Japan (METI). (from https://integbio.jp/dbcatalog/en/about)"^^ . "nicolas.matentzoglu@gmail.com" . . "unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)"^^ . . . "John Cottrell" . "false"^^ . . . . . . . "ontology" . "endpoint"^^ . . . . . . "https://www.tib.eu/digitrubber#DIGITRUBBER_"^^ . . "certain"^^ . . "deims.activity" . "log" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Tectonic"^^ . "ontology" . "UK Higher Education Statistics Agency" . "http://sweetontology.net/phenFluidInstability/$1"^^ . . "Adriano Mari" . . . . "dcelem" . . . . . . . . . "https://knowledge.lonza.com/cell?id="^^ . "ontology" . "http://unite.ut.ee/bl_forw.php?nimi="^^ . "0000004"^^ . . . . . . . "wbphenotype" . . "ICDO" . "has reviewer" . . . "^HSALNG\\d{7}$"^^ . "https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"^^ . . . . . "^[0-9][A-Za-z0-9]{3}$"^^ . . . "rnakato@iqb.u-tokyo.ac.jp" . . . "anatomy" . "oharb@upenn.edu" . . . "false"^^ . "sequence" . . "collagenmutdb" . "cdna/est" . . _:Ne490a5cace6c4b88ade68c86ab29d43f "J.Bard@ed.ac.uk" . . "http://bigg.ucsd.edu/models/"^^ . . "sweet.phel" . . . "http://polytraits.lifewatchgreece.eu/traitspublic_traitdefinitions.php#$1"^^ . . . "false"^^ . . "phenomena" . "https://bmrb.io/data_library/summary/index.php?bmrbId="^^ . "^CHEMBL\\d+$"^^ . . "chromosome" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Function"^^ . . . . . . "false"^^ . "https://schema.coypu.org/global#$1"^^ . . . "false"^^ . . . "AnimalWaste"^^ . "false"^^ . "materials science" . . "nando" . "MetaCyc Compound" . . "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools."^^ . "data model" . . "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."^^ . . . . "Identifiers for chemicals used as additives"^^ . . "snodb" . . "udsaes.fmi" . "^\\d{6}$"^^ . "SWEET Ontology Realm Land Orographic" . "mesh" . . . . . "lrmi.interact" . "http://purl.obolibrary.org/obo/CIO_"^^ . "genome/gene" . . . . . "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$"^^ . "http://purl.obolibrary.org/obo/MIAPA_$1"^^ . . . . . "ontology" . "rna" . "omics" . "dbvar.study" . "false"^^ . . "biopax" . "linked open data" . "75"^^ . "NFDI Core Ontology" . . . "ess" . "academy" . . . . . . . . "ess" . . . . . . . "https://data.chembiosys.de/data_files/$1"^^ . . . "http://sweetontology.net/reprSciComponent/"^^ . "P3DB Site" . . . . . . . . . . "Tarcisio Mendes de Farias" . . "lbo" . "PROSITE" . . . "^T\\d{8}$"^^ . "provides for" . . . "https://www.cellosaurus.org/CVCL_$1"^^ . . "pco" . . . "Dutch Research Council File Number" . "http://uri.neuinfo.org/nif/nifstd/nlx_func_"^^ . . . . "ClinVar Submitter" . "ontology" . . . "dermatology" . "biomedical science" . "817732"^^ . "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records."^^ . . "strain" . "Personal Information Model" . . "ontology" . "NeuroMorpho" . "iCalendar in RDF" . . "Web of Things Security Ontology" . "protein" . . . . . . "sophgf" . "image" . . . . "mgnifystudy" . "dna" . . "false"^^ . . "http://w3id.org/openeduhub/vocabs/educationalContext/"^^ . . . "^102?\\.\\d+\\/.+$"^^ . _:N71e5bba400b14286a6e4458c1724fdbd "Pat Brooks" . "PubChem-bioassay" . "true"^^ . . . . "cgrove@caltech.edu" . "MMP3888430"^^ . . "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier."^^ . . . . "https://www.ncbi.nlm.nih.gov/biosystems/$1"^^ . . . . "https://nf.synapse.org/Explore/Tools/DetailsPage?resourceId="^^ . "repository" . . "PharmGKB pathway" . . "false"^^ . . . . . . "0000001"^^ . "engineering" . . . "reproduction" . "rcameron@sfu.com" . "false"^^ . . . . . . "A0A009HB13"^^ . . . . "gene" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Conservation"^^ . "^[A-Za-z0-9\\-\\/]+$"^^ . "Collagen Mutation Database" . "^\\d+$"^^ . "UMLS_CUI" . "ecyano.experiment" . . "NASA Open Science Data Repository Hardware" . . "SNOMEDCTCT" . . . . "physics" . . "ovae" . "A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project."^^ . "ontology/terminology/nomenclature" . . "The Dietary Restriction Gene Database" . . "The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTL:s etc that is localized to chromosome. The database is dedicated to rat gene nomenclature and should be consulted for queries in such matters"^^ . . "false"^^ . "medicine" . . . . . "rhea" . "http://research.bmh.manchester.ac.uk/informall/allergenic-food/?FoodId="^^ . . "http://nbn-resolving.org/$1"^^ . . "hessische.systematik" . "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code="^^ . . . . "https://onderzoekmetmensen.nl/en/trial/$1"^^ . "http://sweetontology.net/realmAtmoWeather/$1"^^ . "whg" . . . . "^\\d+$"^^ . . "Used for recording the techniques, recovery methods and materials associated with the archaeological sciences. English Heritage takes a leading role in setting standards for recording the built and buried heritage. By setting standards that can be adopted by everyone, we can make sure that all records are consistent. In other words, if everyone uses the same words to describe the same monument, archaeological object, building material, etc, then anyone using this common language can easily index, retrieve and understand these records. With this aim in mind, English Heritage is continually developing new thesauri to provide structure and guidelines for the standardisation of terms to be used when creating new records of the past. Now, in our drive to disseminate these standards and promote their wider use, we are making available seven separate online thesauri. A tailor-made suite of programs has been developed, which uses a database to create a series of web pages for any chosen thesaurus. These can be easily accessed using a frames-capable browser and regularly updated as new terms are submitted and approved by our Data Standards Unit.\n\nNational cultural heritage thesauri and vocabularies have acted as standards for use by both national organizations and local authority Historic Environment Records but until now have lacked the persistent Linked Open Data (LOD) URIs that would allow them to act as vocabulary hubs for the Web of Data. The AHRC funded SENESCHAL project aims to make such vocabularies available online as Semantic Web resources. SENESCHAL will start with major vocabularies as exemplars and project partners will continue to make other vocabularies available. Other organizations are welcome to make use of the data and services which will be open licensed.\n\nRESTful web services will be developed for the project to make the vocabulary resources programmatically accessible and searchable. These will include the provision to ‘feed back’ new terms (concepts) suggested by users."^^ . . "genepio" . . . "chemical" . "functional genomics" . "false"^^ . . . "metanetx.compartment" . "The Experimental Measurements, Purposes, and Treatments ontologY (EMPTY) is a structured vocabulary designed to capture and standardize the scientific reasoning behind experimental measurements. It addresses a critical gap in existing metadata standards, which primarily focus on technical specifications rather than scientific intent. The ontology provides a common language to express why a measurement was taken and the conceptual conditions under which it should be interpreted. By focusing on experimental purposes and treatments, EMPTY is designed to significantly improve the findability, interoperability, and reusability of scientific data. This enables researchers to discover relevant datasets for meta-analyses and cross-disciplinary research based on shared scientific goals. (from https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2753)"^^ . "false"^^ . "classification" . . "KEGG gene" . . . "Content"^^ . . . . "cell biology" . . . "ddi.contributorrole" . . . "http://www.nematodes.org/nembase4/cluster.php?cluster="^^ . "sequence" . . . "https://www.synapse.org/Synapse:syn"^^ . . "post-translational protein modification" . . "cancer" . "bibo" . . "http://sweetontology.net/reprMathGraph/$1"^^ . . "KEGG Compound" . . _:N1be158e19ec84e4695a4f6c5bbfd58b4 "filipivgp2011@gmail.com" . . . . . . . . "ttd.target" . "ontology" . . "ato" . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs."^^ . "The cell line vocabulary inside FlyBase"^^ . . . "DBLP publication ID" . . . . . "false"^^ . . . . "digital planning and construction" . . . . . . . "storedb" . . "1537"^^ . "977869"^^ . "EGID" . "SciCrunch Registry" . "classification" . . "phenotype" . "http://www.peptideatlas.org/PASS/$1"^^ . . . "bone element" . . "sweet.reas" . . "068078"^^ . . . . . "ontology" . . . . . "NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction]."^^ . "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . . . . . . "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . . "false"^^ . . . . . . . . "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)."^^ . "An organization" . . . "dictybase.est" . . . . . . . "false"^^ . "true"^^ . "lido.identifier" . "false"^^ . . . . "^\\w{3}\\d+$"^^ . "expression" . . "iri"^^ . "false"^^ . . . . . . . . "mass spectrometry assay" . "100000"^^ . . . . . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them."^^ . "false"^^ . . "frbr"^^ . "ontology" . . "false"^^ . "^1\\d{4}-\\d{3}$"^^ . _:N58c479fcec8e4f58ae566ce3f2d93c90 "OP-EU-VOCABULARIES@publications.europa.eu" . . "false"^^ . "sciflection" . . "interaction/pathway" . . "rights" . "https://www.ncbi.nlm.nih.gov/protein/"^^ . "http://purl.obolibrary.org/obo/IDO_$1"^^ . . . . . . . _:N1561db16031543ee8334355d10be20b2 "First DataBank Customer Support" . . "Plant Ontology" . . . . . "John Beverly" . "false"^^ . "https://skm.nib.si/search/identifiers/$1"^^ . . "SWEET Ontology Realm Atmospheric" . . . "The set of prefixes used in the Cellosaurus resource" . "life science" . . "false"^^ . . "wb.rnai" . . . . . . "Agronomy Ontology" . . . . . . . "false"^^ . . "Synthetic Binding Proteins Binding Target" . "biological_process" . . "00000000"^^ . "license" . . . . . . . "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$1"^^ . "SWEET Ontology Property Capacity" . . . "Transporter Classification Database" . "http://multicellds.org/MultiCellDB/$1"^^ . . "cell" . . "grid" . . . "botany" . . "false"^^ . . . _:N0b2d7556b13c40b1b6830d62374d1d56 . "SWEET Ontology Representation Space" . "app-d678n-tottori"^^ . . . "interaction/pathway" . "false"^^ . . . . "Aeration"^^ . "ontology" . "polysaccharides" . "LBCTR2023015204"^^ . . . . "protein" . . . . . . "^[SED]R[APRSXZ]\\d+$"^^ . . . . . "^\\d+$"^^ . . . "protozoan" . "stock" . . . "https://meshb.nlm.nih.gov/record/ui?ui=$1"^^ . "A controlled vocabulary to support the study of transcription in the mouse brain"^^ . . . . . "Semantically-Interlinked Online Communities Access Ontology" . "bootstrep" . "An educational ontology for personalised recommendation learning systems that is based on learning path and user profile. It represents the key components for a personalised learning system based on our requirement analysis."^^ . . . . . "Angela Kranz" . "false"^^ . . . . . "0000001"^^ . "Immunology Database and Analysis Portal (ImmPort)" . . "http://sweetontology.net/reprSciFunction/$1"^^ . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Reaction"^^ . . "phenxtoolkit" . . . "physics" . . "The Drug Ontology" . . "NMR Restraints Grid" . . "The Thesaurus of Geographic Names (TGN) is a terminology that focuses on places relevant to art, architecture, and related disciplines, recording names, relationships, place types, dates, notes, and coordinates for current and historical cities, nations, empires, archaeological sites, lost settlements, and physical features. The TGN is one of 5 Getty Vocabularies intended to provide terminology and other information about the objects, artists, concepts, and places important to various disciplines that specialize in art, architecture, and other material culture."^^ . . "^\\d+/.+$"^^ . "false"^^ . "^E\\d+$"^^ . . "^\\d+$"^^ . . "CellBank Australia" . . "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1"^^ . "loop" . . "ontology" . . "SWEET Ontology Realm Ocean Feature" . "structure" . . "Contributor Role" . "jgi.proposal" . . . . . "WikiPathways" . "ontology" . . "interaction/pathway" . "3d structure databases" . "botany" . . . . . . . . "genome/gene" . "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$"^^ . "receptome.family" . . "pathway" . . . . "anatomy" . "b97957"^^ . "wptypes" . . . . . . "The International Clinical Trials Registry Platform, originally called International Standard Randomised Controlled Trial Number (ISRCTN) registry, is a primary clinical study registry recognised by the World Health Organisation (WHO) and the International Committee of Medical Journal Editors (ICMJE) that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)"^^ . . "http://purl.obolibrary.org/obo/OHPI_$1"^^ . "968"^^ . . "cdna/est" . "Database of experimentally verified IRES structures" . "http://purl.obolibrary.org/obo/EV_$1"^^ . . . "ontology" . . "http://www.radiomics.org/RO/$1"^^ . . . . . . "^[A-Za-z0-9+_.%-:]+$"^^ . "Dynamic Ecological Information Management System - Site and Dataset Registry - Sensor" . . . . . "http://iirds.tekom.de/iirds/domain/software#"^^ . . . "false"^^ . . . "P-008-GD6"^^ . . . . . "false"^^ . . . "gene expression" . "alzforum.mutation" . . . . . . . "ForwardStrandPosition"^^ . "sequence" . "TF0001053"^^ . "sorepds" . . "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra."^^ . . . "https://cropontology.org/rdf/CO_346:$1"^^ . "http://bimerr.iot.linkeddata.es/def/information-objects#$1"^^ . "do" . . "AirPollution"^^ . . "false"^^ . . . "^\\d+$"^^ . . . "^\\d+$"^^ . . . "conferences" . . "0000487"^^ . "https://www.pahgncb.com/genomedb/public/genefamily/$1"^^ . . "NIF Standard Ontology: Organisms" . . . "Homeodomain Research" . . . . "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/"^^ . . . "http://rdf.webofcode.org/woc/"^^ . "Getty Thesaurus of Geographic Names" . "http://www.whocc.no/atc_ddd_index/?code="^^ . . . "false"^^ . . . "genome/gene" . "stem cell" . . "https://images.endlessforms.info/collection/$1"^^ . . . "ontology" . . "false"^^ . . . . . "decision" . . "proteomics" . "https://gold.jgi.doe.gov/resolver?id=$1"^^ . . "RL3R1_HUMAN"^^ . . . . _:N21490a5815794097b7d29c0b854bb063 "David Fichtmueller" . . "plant phenotypes and traits" . . . "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1"^^ . . "true"^^ . . . . "false"^^ . . . . . . . . "state time frequency" . "lpt" . . . . "taxonomic classification" . . . "organism" . "EGAD00000000001"^^ . "The Bioregistry's meta-registry"^^ . . . . . "ontology" . "representation space geometry 3d" . . . "obo" . . "dataplant" . "0001263"^^ . "Ax1"^^ . . . "chembl.cell" . . . "https://dialnet.unirioja.es/servlet/revista?codigo="^^ . . "false"^^ . . . . . _:N9b19b2f7df10441eb3cd256ad2b0307f "davem@umn.edu" . "https://www.sigmaaldrich.com/US/en/product/sigma/"^^ . _:N6a10e6d55a2f4193b85885f57d295df0 "rpalma@man.poznan.pl" . . "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT="^^ . "true"^^ . "MESHCS" . "sweet.propsp" . . "bioproject" . . . . . "An ICD-11 code is a standardized alphanumeric identifier used to classify and document diseases, conditions, and health-related issues for global healthcare and statistical purposes."^^ . "condition" . "AMDEFA"^^ . . . "DrugBank Reaction" . "http://purl.obolibrary.org/obo/ECO_"^^ . . . . "true"^^ . . "nfdi4ing" . "GESAH Graphic Arts Ontology" . . "protein" . . "duplication" . . "false"^^ . . . "sequence" . . "mutation" . "obo" . . "false"^^ . . . . . . . . "http://purl.obolibrary.org/obo/PdumDv_$1"^^ . "Dating from 1978 when catalogues of the Central Library of the Commission of the European Communities (now the European Union) were computerised, ECLAS is a thesaurus created by the Central Library of the Commission of the European Communities for indexing the publications and documents acquired by the Central Library of the Commission. ECLAS was based on the Macrothesaurus of OECD and complemented by the ILO thesaurus. After creation of EUROVOC in 1984, convergence started in order to bring ECLAS in line with EUROVOC, but it was never complete. ECLAS contains nineteen areas of interest in a hierarchical tree structure consisting of four levels. ECLAS is fully available in English and in French. The OP COMM ECLAS is maintained by the Publications Office of the European Union on the EU Vocabularies website."^^ . "PubChem compound" . . . . . "^Q[A-Z0-9]+$"^^ . . "nfdi4ing" . . . "false"^^ . "false"^^ . . "^[a-z]+(\\..*?)?$"^^ . "agriculture" . . . . "false"^^ . . . "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning."^^ . . . "phenomena" . . "business administration" . . . . _:Nb20a114a9ea0451f839b5c8ad06d179e "public-prov-comments@w3.org" . . . . "DI-04240"^^ . "MGnify Study" . . . "https://w3id.org/iadopt/ont/"^^ . "mineromero2901@ciencias.unam.mx" . . . "http://ctdbase.org/detail.go?type=disease&db=MESH&acc="^^ . . . . . . . . "schneiderg@zbmed.de" . "runBioSimulations" . . "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."^^ . "false"^^ . . . . "^\\d{6}$"^^ . "false"^^ . "^\\d+$"^^ . . "EAWAG Biocatalysis/Biodegradation Database rule" . . . . "Cell line collections (Providers)"^^ . "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"^^ . . "https://cropontology.org/rdf/CO_365:$1"^^ . . . . _:Nbb4ba7a6898a49508db7d23fe71357c6 . . . "PMC" . "false"^^ . "^\\d+$"^^ . "false"^^ . "^\\w+$"^^ . "protocols and materials databases" . . . . . . . . . . "false"^^ . . . "15753"^^ . . "data management" . . "oma.protein" . "ICEberg family" . "100"^^ . . . . . "life cycle stage" . "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community."^^ . "FAIRagro Collection" . . . . . . . "dc.terms" . _:N2f7f14aff4dd47f8a85f921316dd4e77 . . . "http://www.purl.org/dabgeo/conceptual/energymarketroles#"^^ . "Protein Ensemble Database ensemble" . . "knowledge graph" . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . . . . . . . . . "dna" . . "A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO."^^ . . . . "genome/gene" . . "false"^^ . "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships."^^ . "false"^^ . . . "https://cropontology.org/term/$1:$2" . . "protein" . . _:Ndb67407863794815b529013d4303caea . . "image/movie" . "interaction" . "Assembly" . . . . . "ontology" . . "false"^^ . " Hendrik Borgelt" . "structure" . "https://viperdb.org/Info_Page.php?VDB=$1"^^ . . "obo" . . . "false"^^ . . . . "Abril Azocar Guzman" . . "fair" . "false"^^ . . "false"^^ . . "Human Protein Atlas" . "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders"^^ . "phenotype" . . . . . "http://purl.obolibrary.org/obo/DDPHENO_"^^ . . "pathway" . . . . "http://purl.obolibrary.org/obo/SO_"^^ . "false"^^ . "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons."^^ . "M1"^^ . . . . . "OSR00185W"^^ . "false"^^ . "Homology Ontology" . . . "An ontology for representing the provenance of scientific claims and the evidence that supports them."^^ . . . . . "Cannabis Database ID" . "false"^^ . . . . . . . "dna" . . "https://www.fao.org/fishery/en/species/"^^ . . "BioTools" . "Multiple alignment" . . "http://purl.obolibrary.org/obo/ATO_$1"^^ . "Regulation of Transcription Ontology" . "Lattes Platform number" . . . . . . . . . . "health sciences" . "metabolite" . . . . "NIF Standard Ontology: Qualities" . "plant phenotypes and traits" . "false"^^ . "Insect Resistance Ontology" . "infectious" . "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical"^^ . . . . "https://fairsharing.org/" . "http://w3id.org/nfdi4ing/pro-research#"^^ . . "false"^^ . . . "biopax" . "https://e-cyanobacterium.org/models/model/$1"^^ . "http://www.alzgene.org/geneoverview.asp?geneid="^^ . "false"^^ . . "Dialnet author ID" . . "MetaNetX chemical" . . . . "https://www.linkedin.com/in/"^^ . "life sciences, biology" . "rna_sstrand" . . . . . "The Genetic Testing Registry provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease."^^ . . . "organism-specific databases" . . . . "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$"^^ . . . "co_333" . . . . "International Classification of Diseases, 10th Revision, Procedure Coding System" . "1001"^^ . "O08709"^^ . "false"^^ . "Mammalian Phenotype Ontology" . . "0MYA"^^ . "realm" . "http://purl.org/spar/doco/"^^ . . . . . . "https://sed-ml.org/urns.html#format:$1"^^ . . . "https://www.genenames.org/data/genegroup/#!/group/"^^ . . . . . . . . . "false"^^ . . . "igrhcellid" . . "RM0108606"^^ . . "https://bioregistry.io/proteomicsdb.protein:"^^ . "goche" . "chemistry databases" . . . . . "protein structure" . . . "http://purl.org/gc/"^^ . . . "Open Data Commons for Spinal Cord Injury" . "false"^^ . . "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid="^^ . . . "SAMEA2397676"^^ . . . "agaedigk@cmh.edu" . "fid move" . . . "https://bioregistry.io/tkg:"^^ . . . . "false"^^ . "false"^^ . . "http://purl.obolibrary.org/obo/SWO_$1"^^ . . . "false"^^ . "Inverse of provides for" . . . "interaction/pathway" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Biological"^^ . . . . . . . "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element."^^ . "agriculture" . "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster="^^ . "cpc" . "metabolite" . . . . . . . "repository" . . . "false"^^ . "false"^^ . "ArrayExpress Platform" . . "AdverseOutcomePathway"^^ . "0005"^^ . "^\\d{7}$"^^ . . "https://merckindex.rsc.org/monographs/"^^ . "https://www.nfdi.de/wp-content/uploads/2023/10/1_NDFI_Logo-4c.png"^^ . . "medicine" . . "false"^^ . . . . . . "post-transcriptional modification" . . "nfdi4chem" . . . "NIF Gross Anatomy" . . . . . . . . _:N6129e1665deb48fda27920131fbf7166 "custserv@nlm.nih.gov" . . . "obi" . . "gramene.ref" . . . "https://vegbank.org/cite/$1"^^ . "The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics."^^ . . "http://world-2dpage.expasy.org/repository/database=$1"^^ . . "https://purl.brain-bican.org/ontology/dhbao/DHBA_"^^ . "UM-BBD_reactionID" . "johannes.wittmann@dsmz.de" . . . "ontology" . . . . . . . . "https://purl.dataone.org/odo/MOSAIC_"^^ . "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$"^^ . . . "http://gmd.mpimp-golm.mpg.de/Analytes/"^^ . . "sequence" . "0000006"^^ . . . . "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data."^^ . . "Ontology of Host Pathogen Interactions" . . "NCBI_taxid" . . . "data set" . . "Metabolite and Tandem Mass Spectrometry Database" . . . . . . "ontology" . . "0000001"^^ . . "https://mycobrowser.epfl.ch/genes/"^^ . . . "Giorgio Ascoli" . . . "^\\w+$"^^ . . "Karen Eilbeck" . . "Henriette Harmse" . "germplasma" . . . "https://tree.opentreeoflife.org/taxonomy/browse?id="^^ . "NUI" . "anatomy" . "COL3A1"^^ . "ontology" . "RNA SSTRAND" . . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id="^^ . . . . . "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist="^^ . "Animal natural history and life history" . "nfdi4cat" . "protein" . . . "miRNA Target Prediction at EMBL" . . "antibiotic resistance" . . . . . "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"^^ . "compound" . "http://www.w3.org/ns/earl#"^^ . . . "OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . . "Functional families of proteins, which are a subcategory of superfamilies in CATH"^^ . . "Human Endogenous Retrovirus Database" . "^\\w+$"^^ . "https://www.ncbi.nlm.nih.gov/pubmedhealth/$1"^^ . "nfdi4ing" . . "false"^^ . . "is deprecated" . "SWEET Ontology Property Count" . . . . "phenotype" . . . . . . "DDInter20"^^ . "Conference Ontology" . . "repository" . _:N14fed4586c99464da4c3779e2bc1b341 . "^[A-Za-z0-9+_.%-:]+$"^^ . "false"^^ . . . "http://purl.obolibrary.org/obo/NGBO_$1"^^ . "sweet.mab" . . . . . . . . "JCGG-STR008690"^^ . . . "geosparql" . . . "Will Simpson" . . . "DDB_G0267522"^^ . "EDAM Operation" . . . . "nfdi4chem.osmo" . "true"^^ . "https://w3id.org/oc/meta/"^^ . . "Paul Fabry" . . . "foundational ontologies" . . "agrkb" . "pavel.hobza@uochb.cas.cz" . "ATCC(dna)" . "CTD Disease" . . "genome" . "https://cso.kmi.open.ac.uk/topics/$1"^^ . "Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science."^^ . "qtl" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Servcie Analysis"^^ . "Event (INOH pathway ontology)" . . . . . . "NLXFUNC" . "sperm" . "1859"^^ . . . . . . "bibliography/documents" . "Provenance Information for Materials Science Ontology - Core Module" . _:N8274f81f136e44c5b3a6956608ef31a6 "J.Bard@ed.ac.uk" . "kegg.environ" . . "An identifier for institutions in the United Kingdom, used in GRID and ROR."^^ . . "ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides and maintains identifiers for alleles."^^ . . . . . "false"^^ . . . "FeatureOfInterest"^^ . "chemistry" . "silva.taxon" . "https://database.factgrid.de/viewer/item/$1"^^ . . "VegBank" . . . . "https://glottolog.org/resource/languoid/id/"^^ . . . . "rtecs" . . "http://sweetontology.net/propEnergyFlux/$1"^^ . . . . "Jeffrey A. Detras" . . "The System Package Data Exchange™ (SPDX®) specification is an open standard designed to represent systems containing software components as Software Bill of Materials (SBOMs). Additionally, SPDX supports AI, data, and security references, making it suitable for a wide range of risk management use cases. This _spdx3_ prefix is for SPDX 3.x versions. For earlier versions, use _spdx.term_."^^ . . "norine" . "0001079"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Graph"^^ . . . . . . "http://purl.obolibrary.org/obo/VIDO_$1"^^ . . "https://grants.nih.gov/stem_cells/registry/current.htm?ID="^^ . "genome" . . "toxicology" . . . "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$"^^ . . . . "75"^^ . . . "Andy Deans" . "sustaingraph" . . "https://thebiogrid.org/interaction/$1"^^ . "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images."^^ . "false"^^ . "Health Procedure Ontology" . "small molecule" . . "http://purl.org/spar/bido/"^^ . . . "SILVA Taxon" . "http://purl.obolibrary.org/obo/GOREL_$1"^^ . "SWEET Ontology Property Function" . "https://bioregistry.io/dbd:"^^ . . "https://cryptodb.org/cryptodb/app/record/gene/$1"^^ . "rna" . . . "false"^^ . . "IND608186955"^^ . "computer science" . . "1150"^^ . "Minimal set of terms for anatomy."^^ . "https://radlex.org/RID/$1"^^ . "state role" . "SupraBank Additive" . "http://rdf-vocabulary.ddialliance.org/lifecycle#"^^ . . "false"^^ . . . . "liz.allen@f1000.com" . . "^\\d+$"^^ . "ontology" . "metadata standardization" . . . "false"^^ . "doco" . "niclas.karlsson@medkem.gu.se" . "raghava@iiitd.ac.in" . . "^\\d{7}$"^^ . _:N504c748bdcd34106a61bce4e8359b1fa "jerven.bolleman@isb-sib.ch" . . "false"^^ . "http://purl.obolibrary.org/obo/NCIT_$1"^^ . "protein" . . . . "P00024"^^ . . . . "false"^^ . "Integrated Chemical Environment - Chemical data" . . "knowledge representation" . . "Accession number of an entry from the BIND database."^^ . "false"^^ . . . . "nfdi4ing" . . "modalia" . . "lido.recordtype" . "life science" . "phenotype" . . "Assigns persistent identifiers to multidisciplinary research outputs with focus on research originating in Africa, such as in cultural heritage and indigenous knowledge."^^ . . . . . . . . . "false"^^ . "medicine" . "http://purl.obolibrary.org/obo/ENVO_$1"^^ . . . . . . . . . . . . "^\\d{7}$"^^ . . . . . . . . . "https://molbic.idrblab.net/data/compound/details/$1"^^ . . . . "true"^^ . . . . . . "false"^^ . . "1"^^ . . . . . "ecmdb" . "abdelmoneim.desouki@tu-darmstadt.de" . . . "An ontology to describe entities related to cardiovascular diseases"^^ . . "ekaterina.chuprikova@eurac.edu" . . "genetic disorder" . . . "MycoBrowser leprae" . . "ChemBioSys Model" . "false"^^ . "instancesOf"^^ . . . "life sciences, biology" . "dimensionless ratio" . . "identifier for a researcher in a system for scientific authors, redirects to a Web of Science ID, along with P3829"^^ . "http://purl.obolibrary.org/obo/FOVT_$1"^^ . . . . . "^\\d{5}$"^^ . . . . "chemistry" . . . "false"^^ . . . . . . "false"^^ . "false"^^ . . "sweet.hud" . . "code for a region per NUTS (Nomenclature des unités territoriales statistiques), a geocode standard for referencing the administrative divisions of countries for statistical purposes"^^ . "Global Research Identifier Database" . "bcgo" . . . "Simple Knowledge Organization System eXtension for Labels" . "Zachary King" . . . . . . "http://purl.obolibrary.org/obo/MSIO_"^^ . . . "http://sweetontology.net/reprSpaceGeometry3D/"^^ . . "genetic variation" . . . "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date."^^ . "A structured controlled vocabulary of stage-specific anatomical structures of the developing human."^^ . . . "false"^^ . . "2116"^^ . . . . . . . . "Paragraph"^^ . . . . . . . "DataSet_1"^^ . "false"^^ . . "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference."^^ . . "European Union Publications Office dataset" . . . . . . . "aphidbase.transcript" . . . "genomics" . . . . . . . . . "https://www.ebi.ac.uk/interpro/entry/antifam/"^^ . . . "nfdi4chem" . . "^\\d+$"^^ . . . . "https://covid19.sfb.uit.no/api/records/"^^ . "https://graphics.endlessforms.info/element?id=$1"^^ . . "false"^^ . . "gene" . "ontology" . . . . . "molecular interaction" . . "http://sweetontology.net/propMass/"^^ . "false"^^ . . . . "false"^^ . "The AGD is an integrated database resource dedicated to collecting the genomic-related data of the Asteraceae family. This collection refers to the genomic data of Asteraceae species."^^ . "stem cell" . . "http://www.xmetdb.org/xmetdb/protocol/$1"^^ . "https://www.devtox.org/nomenclature/ml_manus.php?mno=$1"^^ . "https://mgtbind.pkumdl.cn/complex/"^^ . . . . "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web"^^ . "earth sciences" . "gorel" . "educor" . "A symbol for a molecule in the C. elegans Small Molecule Identifier Data. Note that this isn't the same as the 'DB info' identifier"^^ . "drks" . "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information."^^ . . . . . . "An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix)."^^ . "genome" . . "hao" . . . "ontology" . . . . . . "https://biopragmatics.github.io/providers/peff/"^^ . . "A type for entries in the Bioregistry's metaregistry." . "true"^^ . "http://purl.obolibrary.org/obo/LOGGERHEAD_"^^ . . . . "zengxian@fudan.edu.cn" . . . "^\\d+$"^^ . "nfdi4energy" . . "jiezhen@med.umich.edu" . "realm" . . "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information."^^ . . . . . . . . "mutation" . . . "Joshua Klein" . "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels."^^ . . . "somamin" . . _:N0e1a25a65af54d838bf53d5e565737f7 "shawntanzk@outlook.com" . "http://sweetontology.net/phenOceanDynamics/"^^ . . . . "http://www.molbase.com/en/index.php?app=search&search_keyword="^^ . . . . . . . . . "subject agnostic" . . "doi" . . . . "3d structure" . "false"^^ . . . "development" . "life science" . . . . "ontology" . . . "rna" . . . . . "http://purl.obolibrary.org/obo/EPIO_$1"^^ . . "Virus' miRNA target" . . "https://schema.coypu.org/em-dat#$1"^^ . . . "immunology" . . "enzyme" . "^A[A-Z]+\\d+$"^^ . "^\\d{7}$"^^ . . "https://catalog.integbio.jp/dbcatalog/en/record/$1"^^ . . . "https://www.inaturalist.org/observations/$1"^^ . "ontology" . "hinv.locus" . . . "data retrieval" . . . "The LIDO Terminology is committed to the Linked Open Data paradigm by making each LIDO Term referenceable through a Uniform Resource Identifier (URI). It is recommended best practice to use the URI from the terminology.lido-schema.org/ namespace to indicate the type of a LIDO element or attribute. The primary objective of this practice is to support data providers in adapting or mapping their data structures to LIDO, thus facilitating the processing of LIDO data for service providers, increasing the interoperability of LIDO data, and supporting information retrieval across different collections. [from homepage]"^^ . "obo" . . . . . . . . "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays."^^ . "http://emmo.info/emmo#EMMO_$1"^^ . . . . "false"^^ . "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded"^^ . "assay" . . "false"^^ . "An identifier for institutions in the United Kingdom, used in GRID and ROR."^^ . . . . "eco" . "phenomena" . "true"^^ . "false"^^ . . . "interaction/pathway" . . "Animal Genome Size Database" . . "true"^^ . . "false"^^ . . "^[0-9a-z_:\\.-]+$"^^ . "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$"^^ . . . "ess" . "High-Performance Computing Ontology" . "^\\d{8}$"^^ . . . . "giant.plankton@gmail.com" . . "A topic in the CORDIS database"^^ . . "vsao" . "The Groundnut Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . . "dna" . . "curriculum" . . "agriculture" . "plant ecology" . "http://purl.obolibrary.org/obo/FBcv_$1"^^ . "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1"^^ . "https://www.genedb.org/gene/$1"^^ . . . . . "0001290"^^ . . "computer science" . . . . . . . . "false"^^ . . . "nfdi4energy" . . "matus.kalas@uib.no" . . . "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1"^^ . "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1"^^ . "ontology" . . "false"^^ . "0000013"^^ . "inchikey" . . . "http://purl.obolibrary.org/obo/MIRO_$1"^^ . . . "John Garavelli" . "Describes the level of proficiency of an individual in a natural language."^^ . "SFB_COVID19_MW286762"^^ . . . . "obo" . "zobodat.taxon" . "1cukA01"^^ . "^[A-Z]+[0-9]+$"^^ . . "false"^^ . "Núria Queralt Rosinach" . . . . . "A controlled vocabulary of media resources, such as audio, cartographic, manuscript, multimedia, etc."^^ . "Clinical Trials Information System" . . . "https://mycobrowser.epfl.ch/genes/"^^ . . "https://www.w3.org/2019/wot/hypermedia#"^^ . "anatomy" . . . "https://www.nextprot.org/term/"^^ . . . "Mammalian Feeding Muscle Ontology" . "Data Object Service" . "Xenopus Anatomy Ontology" . . . . "^\\d+$"^^ . . . "false"^^ . . . . . . . . . "educational resources" . "Q9P0K8"^^ . . "false"^^ . . "The Genome Taxonomy Database (GTDB) is an initiative to establish a standardized microbial taxonomy based on genome phylogeny."^^ . "sweet.maf" . . . . . "false"^^ . . "IPR" . . "oboe" . . "ganesh.swaminathan@sanger.ac.uk" . "genome/gene" . . . "pathway" . "FBcv" . . "antibodypedia.supplier" . . "^\\d+$"^^ . "12492249"^^ . "http://www.w3.org/2008/05/skos-xl#$1"^^ . "AutomationSystem"^^ . "go.chebi" . "https://odc-sci.org/data/"^^ . . "Luis González-Montaña" . _:N28c214d40a0847f5966459cb05c847ce . . . . "pdb" . . . . . "law" . "openWEMI Vocabulary" . . "An ontology of metadata from protege"^^ . "SNOMEDCT_US_2018_09_01" . . . "GenBase" . "dcat" . . "obo" . "http://purl.obolibrary.org/obo/FLOPO_$1"^^ . . . "The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts."^^ . "ontology" . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes."^^ . "http://www.sasbdb.org/data/$1"^^ . . . . . . "Carlo Ravagli" . . "https://mediadive.dsmz.de/ingredients/"^^ . . . "Art and Architecture Thesaurus" . . . "Category Scheme Election Studies" . "obo" . "homologous" . "napdi" . . . . . . "ontology" . . . . . . . . "rdfs" . "Drivers of human diseases including environmental, maternal and social exposures."^^ . "ontology" . . . . "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids."^^ . . "http://www.genome.jp/dbget-bin/www_bget?aaindex:$1"^^ . "tib.ifc" . . . . "true"^^ . . . . "Arctic Data Center Academic Disciplines Ontology" . . "046"^^ . "Basic Classification" . . . "iao" . "selventa" . . "false"^^ . . . "A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis."^^ . . "false"^^ . . . . . "Matteo Guenci" . "mixs" . . "false"^^ . "false"^^ . . "^\\d+$"^^ . . . . "https://w3id.org/APTO/$1"^^ . "https://hdl.handle.net/hdl:20.500.12582/"^^ . "digitalconstruction.energy" . . "false"^^ . . "rat" . . . . "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant."^^ . "false"^^ . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Biodiversity Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Biodiversity Consortium members appropriate for maintaining this collection." . "alzgene" . . "http://iirds.tekom.de/iirds/domain/machinery#$1"^^ . . "Johannes Wittmann" . . . . . . . . "0000546"^^ . . "biomedical science" . "^CFc\\d{9}$"^^ . "https://horizondiscovery.com/en/search?searchterm=$1"^^ . . . . . . . . . . . . . . "Ontology of Host-Microbiome Interactions" . "A disease/condition-specific instantiation of a canonical biomarker"^^ . . "Hymenoptera Anatomy Ontology" . . . . . "bibliography" . . . . . . "NFDI4Chem Collection" . . "false"^^ . . . . . "database" . "95-0166C6"^^ . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Vitis Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "11478"^^ . "The Darwin Core term pathway provides information about the process by which an Organism came to be in a given place at a given time. The Pathway Controlled Vocabulary provides terms that should be used as values for dwc:pathway and dwciri:pathway."^^ . "genome/gene" . . . "false"^^ . "false"^^ . . . "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid="^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Heliosphere"^^ . . . . . . "Extensible Markup Language" . . . . "SWEET Ontology Material Animal" . "false"^^ . . "Indicates the frequency of data collection events."^^ . _:Na1b86e03106a4a7ea9981e7934d826ca . "nlx.cell" . . . . . . . . "https://www.fishbase.ca/summary/"^^ . . "An ontology to capture confidence information about annotations."^^ . . . . "drug" . "Hetvi Khamar" . . . . "67"^^ . "arthit@gmail.com" . . "https://www.nfdi.de/wp-content/uploads/2025/12/logo25_plus-text-hori_light_transparent.png"^^ . . "Karel Berka" . "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id="^^ . . "sophft" . . . . . "https://ice.ntp.niehs.nih.gov/api/v1/search?chemid=$1"^^ . . . . "SWEET Ontology Realm Geologic Continental" . . . . "false"^^ . . . . . "cell/organelle" . . . . . . . "EntrezGene" . . . . "structural bioinformatcs" . . "http://sweetontology.net/stateThermodynamic/"^^ . . "project" . . . . . . . . . . . . . . . "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected."^^ . "ontology" . "genome/gene" . . "The Cancer Imaging Archive (TCIA) is a publicly accessible service that de-identifies and hosts a large archive of medical images of cancer, organized into collections typically grouped by disease type, imaging modality, or research focus. Supporting data such as patient outcomes, treatment details, genomics, and expert image analyses are provided alongside the images when available."^^ . . . "Ribocentre is designed to contain comprehensive information of all natural ribozymes."^^ . . "Scopus Work" . "https://suprabank.org/molecules/"^^ . . . "true"^^ . . . . "InfoSecSoS Ontology" . . "The Echinoderm Anatomy and Development Ontology" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind"^^ . . . "22-46615880-T-C"^^ . "sweet.stdp" . . "genome/gene" . "nfdi4chem" . "evr" . . . "Dataset"^^ . . "https://suprabank.org/molecules/$1"^^ . . . "GitLab" . . . . "ccso" . "3403"^^ . . . . "0116"^^ . "Richard Cyganiak" . "http://pepbank.mgh.harvard.edu/interactions/details/"^^ . "false"^^ . "obo" . "inspire.theme" . "datasets" . . "https://portal.gdc.cancer.gov/cases/"^^ . . "Cell Markers Ontology" . "SWEET Ontology Property Categorical" . . "dna" . . . "Glottolog" . . "http://edamontology.org/format_$1"^^ . . "computer science" . "small molecule" . . . . "Air"^^ . . . "The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for individual biosynthetic gene clusters (BGCs) linked to their corresponding bacterial or archaeal source."^^ . "small molecule" . . . . . . . . . . "drug discovery" . . "0000013"^^ . "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes."^^ . . . "https://dblp.org/pid/"^^ . "protein" . "cdpd" . . . . "longevity" . . "sweet.repmo" . "epidemiology" . . . "^\\w+$"^^ . "genetic variation" . . . "Entity in Wikidata"^^ . . "Basic Formal Ontology" . . . "structure" . . . _:Ne4fae1d6109e4c46a4047d9ea42b177a "j@deltaflow.com" . "physical chemistry" . . . . . . . "false"^^ . "https://doi.org/10.26434/CHEMRXIV."^^ . "Jian Huang" . . . . . . . "Human Proteome Map Peptide" . "transgenic" . "00000443"^^ . "Identifiers for immune receptors, representing receptor complexes or groups studied for their interactions with antigens or epitopes."^^ . . "false"^^ . "TTD Drug" . . "^\\d+$"^^ . . "^\\d+$"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry 3D"^^ . "^\\d{7}$"^^ . . "protein" . . . . "Thesaurus of Plant Characteristics" . . "false"^^ . . "bugbase.protocol" . . "epigenetics" . . . . "traits" . . . . "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes."^^ . . . "units" . . . . . . . . . . . . . . . . "modularmassactionprimer"^^ . . . "The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma."^^ . . . "drm" . . . . . "a formalization of concepts and relations relevant to evolutionary comparative analysis"^^ . . . "interaction/pathway" . . "72ff6ff882ec447f12df018e6183de59"^^ . "biocuration" . "http://www.kegg.jp/entry/$1"^^ . . . "nfdi4chem" . "false"^^ . "^\\w+$"^^ . . . . . . . . . . . . "https://odc-sci.org/data/$1"^^ . . "Modular Ontology Modeling for Food Supply Chains."^^ . "https://easychair.org/cfp/topic.cgi?tid="^^ . . . . . . . . . "MarDB includes all sequenced marine microbial genomes regardless of level of completeness."^^ . "Virtual Fly Brain" . "https://www.glycoepitope.jp/epitopes/"^^ . "Database of protein-protein complexes" . . . "false"^^ . "Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system."^^ . "0020"^^ . . "http://sweetontology.net/reprSpaceGeometry3D/$1"^^ . "Q24708"^^ . "medicine" . "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources"^^ . "https://www.ebi.ac.uk/metagenomics/analyses/$1"^^ . . . . "25512"^^ . . "kwsm@dbcls.rois.ac.jp" . . "Anatomical Therapeutic Chemical Vetinary" . . . . . . . "nfdi4chem" . . . . . "http://sweetontology.net/reprSpaceReferenceSystem/$1"^^ . "false"^^ . "BacDive" . . . . "RCB0002"^^ . . "false"^^ . . "family and domain databases" . . "false"^^ . "sweet.propdife" . . . "pubmed" . "repository" . . . . "CGH Data Base" . . . . . "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1"^^ . "http://www.wikidata.org/entity/$1"^^ . "00000105"^^ . . "civic.variant" . . "PA447218"^^ . . . . . . . . . . "genome/gene" . . . . . . . . . "drug metabolism" . . . . "Allyson Lister" . . "phenotype" . "An ontologization of Public Library of Science (PLOS) journal keywords and topics. It's not clear how the IDs correspond to the actual pages. Appears in ADCAD."^^ . . . . "A database of chemicals relevant for plastics and polymer sciences."^^ . . . "false"^^ . "false"^^ . . . "jcsd" . . "false"^^ . . "vaccines" . "The Getty Thesaurus of Geographic Names (TGN) is a structured vocabulary, including names, descriptions, and other metadata for extant and historical cities, empires, archaeological sites, and physical features important to research of art and architecture. TGN may be linked to GIS (Geographical Information System), maps, and other geographic resources. [from https://collectionstrust.org.uk/resource/thesaurus-of-geographic-names-tgn-getty/]"^^ . . . "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id="^^ . "ontology" . "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . "mpath" . "https://drks.de/search/en/trial/"^^ . . "Steven E. Wilson" . . "gene" . . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the GHGA Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying GHGA Consortium members appropriate for maintaining this collection." . "drsc" . . . . . "^\\w+$"^^ . . "false"^^ . "Human Protein Complex Map" . . . . "taxonomic classification" . . . "chemistry" . "Cell line databases/resources"^^ . . "bioregistry.registry" . . . "obo" . "ontology" . "false"^^ . . . "^\\d{7}$"^^ . . . . "MeSH 2012" . . . . . "http://www.rcsb.org/ligand/"^^ . . "https://amoebadb.org/amoeba/app/record/gene/"^^ . "codelink" . . . "lincs.smallmolecule" . . . . . . . "https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno=$1"^^ . . . "Plant Experimental Conditions Ontology" . . "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia.variant' prefix is used for genetic variants associated with phenes listed in OMIA"^^ . . . "embryo" . . . "https://www.chemfont.ca/chemicals/$1"^^ . . . "structure" . "AC00963334"^^ . "^\\d+$"^^ . . . . . . "DALIA Resources" . . . "data science" . . . . . . . . "http://purl.obolibrary.org/obo/UO_$1"^^ . . . . "false"^^ . . . . "life science" . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"^^ . . "Philipp Bucher" . "https://massbank.us/spectra/display/"^^ . . . . "^\\d+$"^^ . . "DTXSID2021028"^^ . "unicarbdb" . . "genome" . . "SD00043"^^ . . "organ" . . "sweet.sttf" . "vsmo" . "Value Added Tax identification number" . "false"^^ . . . . "Adrien Coulet" . . . "cellbank.australia" . . "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code."^^ . . "^\\d+$"^^ . . "Identifiers for missions associated with experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . . "nasaosdr.study" . . "Database of Macromolecular Interactions" . "Area"^^ . "ChemBioSys Organism" . . . . "false"^^ . . . "false"^^ . . "H-InvDb Locus" . . . . "100000000000001"^^ . . . . "http://rdfs.org/sioc/swan#"^^ . "genome" . . "SubstrateDB" . "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students."^^ . "mondo.issue" . . "gf2018026088"^^ . . . . . . . . . . . . . . "food" . . "nfdi4culture.id" . "co_348" . . . . "^\\d+$"^^ . . "state change" . . "0000248"^^ . . . . . . "Thesaurustrait"^^ . "http://sweetontology.net/realm/$1"^^ . "rhyam@rbge.org.uk" . "16333295"^^ . . . . . . . "ajacobs@cas.org" . "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1"^^ . . . "As the variable is one of the most relevant entities to enhance data reuse in the Social Sciences, we provide a framework design to better semantics the variables' relations descriptions. These explicit relations between variables enable comparability and facilitate harmonization across waves. We provide a brief textual identification of the relation type, supported by a controlled vocabulary (CV) and an extended description of the relationship. These relations within variables include but are not limited to different versions, derived formats in new waves, new labels and name wording, and alternative response schema through questionnaires and surveys. For instance, a given variable label is changed from one wave to another, even though its concept remains the same. Their values also are subject to change, such as new cardinalities settings, their categorization, or response scheme and scale measurement. They change based on different conditions, e.g., values are updated by any constraints or modified to comply with the study evolution requirements or a new sociological approach. In the Social Sciences, Economics, and Behaviour Sciences, which investigate, for instance, the social structure of the population, political attitudes of voters and candidates, opinions on family, work, religion, politics and society or competencies of adults, those topics are highly subject to change to fit the empirical reality in a constantly changing world. Thus, we propose widening relations descriptions for Social Sciences variables within datasets beginning from the BasedOnObjectType DDI as a first approach."^^ . "CFo000000197"^^ . . . "daml.pt" . . . _:Nea16c5e529ac4aeda2fbfd93cbc111d3 "John Wieczorek" . "getty.ulan" . "http://purl.obolibrary.org/obo/MmusDv_$1"^^ . "stn" . . "602"^^ . "interaction/pathway" . . . "nlx.mol" . . "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0"^^ . . . "Database of RNA Junctions and Kissing loop Structures" . "NEPOMUK Contact Ontology" . . "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis."^^ . . "false"^^ . . . "false"^^ . "sorelh" . . . . "Tetrahymena Stock Center" . . . . "Mid-level Energy Ontology" . "protein" . "obo" . . . . "http://www.tdwg.org/standards/642$1"^^ . . "sweet.hut" . "cdcode.condensate" . "method" . "xlmod" . . . . "bb0754dd-7e69-4b29-b348-3f8017f73d6b"^^ . . . . "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature."^^ . "pharmgkb" . "ico" . . . . . "Bioregistry Collections" . "https://abrc.osu.edu/stocks/number/SALK_"^^ . . "false"^^ . . . "17254"^^ . "http://purl.obolibrary.org/obo/PPO_"^^ . . _:N5c1ccea86ca04cd5a9adddb75b98d3a8 . "false"^^ . . "This is a vocabulary collection utilized by XHTML Family modules and document types using XHTML Modularization, including XHTML Role and XHTML + RDFa as defined in rdfa-syntax. The XHTML specifications are developed by the W3C XHTML 2 Working Group as part of the W3C HTML Activity. [from homepage]"^^ . . "http://purl.org/spar/cito/$1"^^ . . "bibliography/documents" . "http://exac.broadinstitute.org/variant/$1"^^ . "https://phytochem.nal.usda.gov/phytochem/chemicals/show/$1"^^ . . . . "ontology" . . . . . . . "http://data.loterre.fr/ark:/67375/N9J"^^ . . "irct" . . . . "obo" . "Rat Genome Database" . . . "Action"^^ . . "https://deims.org/dataset/"^^ . . "vendor" . . "https://www.w3.org/2009/pointers#"^^ . "87"^^ . . . "Antimicrobial Peptide Database" . "expression" . "^\\d{7}$"^^ . . "http://uri.gbv.de/terminology/kenom_material/"^^ . . . . . . . . . . "compound" . . "chemical" . "PubMed Health" . . "frim1"^^ . "botany" . . . "https://web.www.healthdatagateway.org/dataset/"^^ . "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide)."^^ . "The goal of the CODATA Research Data Management Terminology is to gather the key terms needed for a common understanding of the research data management domain. The RDMT was revised by the CODATA RDM Terminology Working Group, shared for public review, and then confirmed and finalised in 2023.\n\nThe RDMT grew out of the CASRAI Research Data Management Glossary, which was intended as a practical reference for individuals and groups concerned with the improvement of research data management (RDM). In 2020, CASRAI requested that CODATA assume responsibility for the curation of this valued resource. \n\nTo that end, the RDM Terminology Working Group uses a lightweight and pragmatic biennial process to review the resource now restructured as the CODATA RDM Terminology and suggest any edits, additions and removals that are required in order to develop and improve this important reference resource."^^ . . . . "genetically modified pig" . . "^[1-9]\\d*$"^^ . . "false"^^ . . . . "ppo" . . "metabolite" . "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome."^^ . "false"^^ . . . "http://publications.europa.eu/resource/dataset/"^^ . . "ontology/terminology/nomenclature" . . . "lvont" . "translation_language"^^ . "sweet.relch" . . "^\\d+$"^^ . . . "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology."^^ . . . "false"^^ . . . . "small molecules" . . . . "interaction" . . . "http://www.ifomis.org/bfo/1.1/snap#"^^ . . "semapv_voc" . . . . . . "http://theworldavatar.com/ontology/ontocompchem/ontocompchem.owl#$1"^^ . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene."^^ . "^\\d+$"^^ . . . . "taxonomy" . . "http://data.europa.eu/89h/"^^ . . "1868"^^ . . . . . . . . . "http://purl.obolibrary.org/obo/OBCS_$1"^^ . . . . "ontology" . . "ncats.drug" . . "https://vocabularies.cessda.eu/vocabulary/rexconcepts?lang=en#code_$1"^^ . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . "MEDLINE" . "life science" . "^CE\\d{5}$"^^ . "http://www.ymdb.ca/compounds/$1"^^ . "UTRdb" . . "obo" . . "fortuna@ebd.csic.es" . "https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:$1"^^ . . . "ricenetdb.compound" . . "pathway" . "This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource."^^ . _:N30c45d8e97fd43ec8ee0f224d34d7ec5 . . "AT1402"^^ . . "false"^^ . . "foundational ontologies" . . "quality" . . "https://scicrunch.org/resolver/RRID:"^^ . . . "sohu" . . . . . "pubmed"^^ . "false"^^ . . "https://sumlineknowledgebase.com/?page_id=$1"^^ . . . "metadata" . . "false"^^ . "ctis" . . . "1829126"^^ . . . . "false"^^ . "chickenqtldb" . . "United States Department of Agriculture Veterinary Biological Product Code Number" . "false"^^ . . . . . "http://purl.org/eis/vocab/scor#"^^ . "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata."^^ . . . "Cube db" . . . "concept23310"^^ . "http://www.w3.org/2011/content#$1"^^ . . . "developmental biology" . . "https://purl.brain-bican.org/ontology/dmbao/DMBA_$1"^^ . . . . "http://purl.obolibrary.org/obo/DDANAT_"^^ . "http://ictv.global/id/MSL40/$1"^^ . . "REACT" . . "metaproteomics" . . "ChemSpider" . . . "hesa" . . . "Collection" . . . "phenotype" . . "PLANT REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Pathway annotations are authored by expert biologists, in collaboration with the Reactome editorial staff and cross-referenced to many bioinformatics databases. These include project databases like Gramene, Ensembl, UniProt, ChEBI small molecule databases, PubMed, and Gene Ontology."^^ . . "^\\d+$"^^ . . . "SWEET Ontology State Spectral Line" . . "philosophy" . . . . . . . "nmdc" . "https://bioregistry.io/whg:"^^ . . . "cardiovascular disease" . . . . . "nfdi4ing" . . . "0000586"^^ . . . . "http://nbn-resolving.org/"^^ . . . . "http://purl.obolibrary.org/obo/MRO_$1"^^ . . "nutritional science" . "gene expression" . "embryonic stem cell line" . "Iconclass Classification" . . . "realm" . . . "AddexBio cell line products" . "^SD\\d+$"^^ . "http://igsn.org/$1"^^ . "ssbd.dataset" . . "false"^^ . "rapdb.locus" . . "http://sweetontology.net/realmClimateZone/$1"^^ . . "false"^^ . . "computer science" . "CSP2005" . . "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies."^^ . . "ontology/terminology/nomenclature" . "major histocompatibility complex" . "https://saref.etsi.org/saref4auto/"^^ . . . . "^\\d{8}$"^^ . . . "https://www.chemspider.com/search?params=$1"^^ . . "agronomy" . . "002_xxx_xxx-a228d7e065dc45b4b5ab48876aab7228-vp"^^ . . "4447"^^ . "https://aopwiki.org/aops/"^^ . . . "geologic tectonic" . "assay" . . . . . "19333"^^ . . "gateway" . "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog."^^ . "th" . "lspci" . "Provenance Information for Materials Science Ontology" . "http://lexvo.org/ontology#"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Coastal"^^ . "http://www.narcis.nl/publication/RecordID/"^^ . "iot" . . . . . "0009089"^^ . "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."^^ . "Bgee organ" . _:N5ec45fe5d19341bebd7629c1e787bb71 . . . "false"^^ . . . "ontology/terminology/nomenclature" . . "Model Card Report Ontology" . . . . . "xyz19940216@163.com" . . "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1"^^ . . . "https://ocid.ontochem.com/prefname?ocid=$1"^^ . "false"^^ . "heliosphere" . . _:Nbf4032d257f24463a40c44f4ef344d37 . "FEMA provides identifiers for flavor ingredients deemed safe for food use. These entities include chemical compounds and natural substances used as flavoring agents, each reviewed by the FEMA Expert Panel for GRAS (Generally Recognized As Safe) status. The identifiers link to safety data and regulatory assessments, including evaluations by the U.S. FDA and, where applicable, the Joint FAO/WHO Expert Committee on Food Additives (JECFA)."^^ . . "137"^^ . . . . . . "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names."^^ . . . "OpenTrials ID" . "Software Package Repositories" . . "true"^^ . . . "obo" . . "The Cowpea Trait Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . "small molecule" . . . . . "false"^^ . "https://w3id.org/metpo/"^^ . "ontology" . "0000184"^^ . . . "DALIA Community" . "fair data spaces" . "235" . . . . . . . . "phenology" . . "The Cert Ontology" . "tib.hpont" . . "false"^^ . "http://purl.org/nemo/competence#$1"^^ . . "nfdi4ing" . . "temperature gradient" . "educational resource" . . "8668"^^ . . . "2526"^^ . . . _:Nece273ab007c4d45a308d07dceced7af . "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1"^^ . . . "aopo" . . "^[0-9a-zA-Z]+$"^^ . . . "https://www.eionet.europa.eu/gemet/en/theme/$1"^^ . "life cycle stage" . "mcourtot@gmail.com" . . "^[A-Za-z0-9]+$"^^ . . . . . "The Human Chromosome Ontology (HCO) provides simple and stable URIs for human reference genome versions to semantically identify human chromosomes."^^ . "false"^^ . . "https://purl.org/fmi-ontology#"^^ . . . "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions."^^ . "numerical identifier for an author in SciProfiles by MDPI"^^ . . "false"^^ . . . "Flora Phenotype Ontology" . . . . . . . . "https://mediadive.dsmz.de/ingredients/$1"^^ . . "false"^^ . . . . . . "method" . "false"^^ . . "nbo" . . "^\\d+$"^^ . . "grouping" . "pathway" . . . . . "geography" . . "lcsh" . "Aron Marchler-Bauer" . . . . "http://www.pocketome.org/files/$1.html"^^ . "MobiVoc Open Mobility Vocabulary 1.1.4" . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . "false"^^ . . . . . . . "David Clunie" . . "^NX_\\w+$"^^ . . "Ontology of Adverse Events" . . "bugguide" . . . "The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects."^^ . . "civic.therapy" . "false"^^ . . . . . "ISO 639 3-Letter Language Code" . "https://w3id.org/kim/educationalLevel/level_$1"^^ . . . . . "Harshad Hegde" . . . "centrally registered identifier" . . . . "genome/gene" . . . . . . "scop.sun" . . "http://sweetontology.net/propCapacity/"^^ . . "Joel Richardson" . . . . "approved drug" . . . . . . . . . . . "Lehrplan Ontology" . . . . . . . "^F\\d{4}$"^^ . "cthoyt"^^ . . . . "Representation of languages"^^ . . . "https://www.ebi.ac.uk/metabolights/$1"^^ . . "rdf" . "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1"^^ . . . "dataplant" . "http://sweetontology.net/matrMineral/$1"^^ . "ontology" . . . "0000048"^^ . . . . . "Thorsten Trippel" . . . . "CurrentSheet"^^ . . . . "https://w3id.org/seo#$1"^^ . "AcidFog"^^ . . "space thickness" . . "orangebook" . "clinvar" . "Mailing"^^ . "engineering" . . . . . . "740"^^ . . . . . . . . . "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1"^^ . "false"^^ . "false"^^ . . . . . . . . . "https://repo.napdi.org/study/$1"^^ . . . . . "dct" . . "nfdi4chem" . "https://nrid.nii.ac.jp/ja/nrid/10000$1"^^ . . "00000001"^^ . . . . . . . "https://www.ncbi.nlm.nih.gov/nlmcatalog/"^^ . . "https://www.cbioportal.org/study/summary?id="^^ . . "Unipathway" . . "https://en.wiktionary.org/wiki/$1"^^ . . "https://bidd.group/NPASS/compound.php?compoundID="^^ . "Sharkipedia Species" . . "disease" . "ACC-1"^^ . . "http://purl.obolibrary.org/obo/AEO_$1"^^ . "geographic location" . "https://covid19.sfb.uit.no/api/records/$1"^^ . "obo" . . . "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]"^^ . . "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively."^^ . . . . . . "contracts" . . "207LH0002X"^^ . "Cuban Registry of Clinical Trials" . . "http://uri.gbv.de/terminology/bk/$1"^^ . "mouse embryonic stem cell line" . . "https://embryology.med.unsw.edu.au/embryology/index.php/Carnegie_Stages#Stage_$1"^^ . . _:N28c214d40a0847f5966459cb05c847ce "kdurante@stanford.edu" . . . . . "norouzi.iut@gmail.com" . "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes."^^ . . . . "^CONSO\\d{5}$"^^ . "false"^^ . "https://biopragmatics.github.io/providers/goche/"^^ . . "e001"^^ . . "engineering" . . "civic.vid" . "co_321" . . "false"^^ . "http://worfdb.dfci.harvard.edu/html/index.php?search_type=name&page=showresultrc&race_query=$1"^^ . . . . . . . "^[0-9]+$"^^ . "^F\\d+$"^^ . "state space configuration" . "false"^^ . . . "mdm" . . . "ontology" . "getty.gvp" . . . "The responsible person for a resource" . "0000061"^^ . "International Nucleotide Sequence Database Collaboration (INSDC) Run" . "nfdi4ing" . "http://www.hmdb.ca/metabolites/"^^ . "181" . . . . "The BiodivPortal is an OntoPortal instance for biodiversity-related ontologies" . "life science" . . "https://w3id.org/sumso#SuMSO_$1"^^ . . "false"^^ . . . . "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data."^^ . "a.azocar.guzman@fz-juelich.de" . "ontology" . "A collection of ontologies, controlled vocabularies, and schemas relevant for the NDFI4Cat Consortium.\n\nThis collection was originally based on the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." . . "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1"^^ . . . . . "Rupert Kellner" . . "insdc.gcf" . . . "Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets."^^ . . . . "sophgt" . . "https://glytoucan.org/Structures/Glycans/$1"^^ . "Phenol-Explorer" . . . . "dwc.pw" . "hgnc" . . . . "Immune Epitope Database MHC Restrictions" . "MJoachimiak@lbl.gov" . "ontology" . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . . "adw" . . . . "nfdi4ing" . "sequence" . . . _:N17ef620c51cd483ab31b147cf180d2d1 "admin@admin.com" . . . "https://civicdb.org/links/diseases/$1"^^ . . . . "obo" . "Redistributor of bilogics and biomedical supplies"^^ . . "false"^^ . "ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea."^^ . "false"^^ . "Sebastian Koehler" . . . . . . . . . "sweet.repsme" . "0000024"^^ . . . . . . "0000050"^^ . . "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id="^^ . "An ontology representation of the LIPIDMAPS nomenclature classification."^^ . "ElNino"^^ . "http://purl.org/dcx/lrmi-vocabs/alignmentType/$1"^^ . . "tricdb" . . . . "dockerhub.user" . "researcher" . "https://flybase.org/reports/FBtc"^^ . . . . . . . "mcarthua@mcmaster.ca" . . . "Types used in the Historic Geo Information System"^^ . . "^HGVST\\d+$"^^ . . "repository" . . . . . . . "sequence" . "false"^^ . . . . . . . "culture" . . "MIRBASE_FAMILY" . . . . . . "ontology" . "false"^^ . . . . . "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1"^^ . . "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . "cdna/est" . . . . . "life cycle" . . . . "biomarkerkb.canonical" . "3D Metabolites" . . . "siqian.he@nih.gov" . "^\\d+$"^^ . . "bioinformatics" . "MMP0523"^^ . "http://sweetontology.net/human/$1"^^ . . . . "AnimalProduction"^^ . . . . . . "Adrien Rougny" . "ontology" . "https://w3id.org/idsa/core/"^^ . . . "phenomena" . . "FlowRepository" . . "false"^^ . . "sequence" . . "false"^^ . "rna" . . . . "http://sweetontology.net/stateStorm/$1"^^ . . "nfdi4ing" . . _:N5f836ee4be9d44fe96224f149bbb5862 . . "csvw" . . "family and domain databases" . "ThoracicArtery"^^ . "industry" . "CoyPu Ontology" . "Plant Environment Ontology" . . . . . . "A Database of Human Hemoglobin Variants and Thalassemias" . . "http://sweetontology.net/reprTimeSeason/"^^ . "humanities" . "false"^^ . . "rnajunction" . "^snoDB\\d{4}$"^^ . . "learning resource" . . . . . . . "hendrik.borgelt@tu-dortmund.de" . . . "false"^^ . . . . "23"^^ . "tk2@ebi.ac.uk" . "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene."^^ . . "primary health care" . "SO-Pharm is a formal ontology that represent domain knowledge in pharmacogenomics. To achieve this goal, SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations). SO-Pharm enables to support knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics."^^ . . . "http://www.kegg.jp/entry/$1"^^ . . . "small molecule" . "ontology" . . . . "false"^^ . . "false"^^ . . . "http://www.pathoplant.de/detail.php?accNo="^^ . "LIDO Terminology Term Materials Tech Type" . . . "https://www.vmh.life/#reaction/$1"^^ . . "chemical and environmental engineering" . . . . . "https://glycopost.glycosmos.org/entry/"^^ . "http://sweetontology.net/matrAnimal/"^^ . . "EBI-366083"^^ . "http://vitro.mannlib.cornell.edu/ns/vitro/0.7#$1"^^ . "This CV, developed as part of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the data types relevant to the research field. The CV includes data types that can result from a variety of different collection methods. These include, for example, standardised or unstandardised surveys, individual or repeated observations, as well as process-produced or user-generated types of data generation. The data types can be subject-, event-, space- or time-related and refer to the individual or aggregate level."^^ . . . . . "isbn" . _:N3bef8cf6b4404fa8ae6105b917cab930 . . . "CIViC Therapy" . "https://vocabularies.cessda.eu/vocabulary/TypeOfTelephone?lang=en#code_$1"^^ . . . . . . . . . "https://molmedb.upol.cz/mol/$1"^^ . . "0000509"^^ . "^\\d+$"^^ . "https://biolink.github.io/biolink-model/"^^ . . "LGCEDe-S-000002244"^^ . . . . . . . . . . "neuron" . "^FR\\-FCM\\-\\w{4}$"^^ . . . . "Daniel Himmelstein" . "http://purl.obolibrary.org/obo/ADO_$1"^^ . . . . "Informed Consent Ontology" . . "https://www.sharkipedia.org/species/$1"^^ . . "The HuBMAP dataset collection provides high resolution molecular data from human tissues, with unique identifiers that enable tracking, citation, and integration of datasets across diverse assay types and donor samples for biomedical research."^^ . "Fab.Schreiber@gmail.com" . . . . "Contains identifiers of cohesin binding sites in human cells from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information."^^ . . "orchard@ebi.ac.uk" . . "ChemBioSys Study" . . "Open Biomedical Annotations" . "phenomena" . . . "sbo" . . . . . . . . . . "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0="^^ . . . "botany" . "fish.mt" . "http://zinc15.docking.org/substances/"^^ . . . . . . "https://idr.openmicroscopy.org/search/?query=Name:idr"^^ . "https://www.emouseatlas.org/emap/ema/DAOAnatomyJSP/anatomy.html?stage=TS$1"^^ . "http://www.loc.gov/premis/rdf/v3/"^^ . "https://civicdb.org/links/assertions/"^^ . "phenotype" . . "genome" . "https://vocabs.acdh.oeaw.ac.at/oeai-cultural-periods/"^^ . . . "gene" . . . . . . "cdna/est" . . . "nfdi4chem" . . "The TIB Terminology Service is an instance of the EBI OLS." . . . _:Na1b86e03106a4a7ea9981e7934d826ca "OP-EU-VOCABULARIES@publications.europa.eu" . . "^\\d+$"^^ . "Bioregistry Schema" . . . . . "0.7-123"^^ . "false"^^ . . . . . . . . . "social science" . . . "Software Engineering Ontology Network" . "http://sweetontology.net/procWave/$1"^^ . . . "development" . . . . . . "rdf" . "Danielle Thierry-Mieg" . . . . "http://sweetontology.net/propSpaceThickness/"^^ . . "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . "false"^^ . . "https://saref.etsi.org/saref4envi/$1"^^ . . . . . . . "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id="^^ . "https://beilstein-strenda-db.org/strenda/public/doiQuery.xhtml?doi=10.22011/strenda_db.$1"^^ . . . "CLO" . "CDBP00415501"^^ . . "engineering" . . . . . "https://www.storedb.org/?"^^ . . . . "adriano.rutz@ik.me" . "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]."^^ . "https://saref.etsi.org/saref4city/$1"^^ . . "BLL"^^ . . "ECCODE" . "br/0601"^^ . . "https://suprabank.org/interactions/"^^ . . . "vocabularies" . . . . "http://data.europa.eu/snb/dcf/"^^ . . . "http://purl.obolibrary.org/obo/DUO_$1"^^ . . "sequence" . . "PF00004"^^ . "gene" . . "Binning"^^ . "MULT_4_VAR1_bovine"^^ . . . "Cell line collections (Providers)"^^ . "MobiDB" . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . . . "^\\w+$"^^ . . "expression" . . "embryo" . . . "^\\d+$"^^ . "Bloomington Drosophila Stock Center" . . "https://www.ncbi.nlm.nih.gov/genome/"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Lightning"^^ . "European Joint Programme for Rare Disease Ontology" . . . . "ev" . "https://scholar.google.com/scholar?cluster="^^ . "AN0097748"^^ . "https://catalog.integbio.jp/dbcatalog/en/record/"^^ . "http://purl.obolibrary.org/obo/OGG_$1"^^ . "sweet.propti" . "^\\d+$"^^ . . "http://www.cellsignal.com/reference/pathway/$1.html"^^ . "iresite" . . . "nlcd" . . . . . "WGS-95-1333"^^ . . . . "C023"^^ . . . . . . "ontology" . "Classification of Transcription Factors in Mammalia" . . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . "yrcpdr" . . . . . "oer" . "false"^^ . "variant" . . "false"^^ . . "false"^^ . . . . . . . . "fid baudigital" . . . "Arc"^^ . . . . . . . . . . . . . . . . . . "GR_GENE" . "^P\\d+$"^^ . "mmsl" . . . . . . "0000000"^^ . . . "wes_schafer@merck.com" . . . "Names of organisations providing metadata for CESSDA Data Catalogue."^^ . . "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information."^^ . . "dalia.oer" . "function" . . "http://purl.obolibrary.org/obo/NCRO_$1"^^ . _:N5dda678f89af4d27868c98d0a250580e "michael.lincoln@va.gov" . . . "Gene Ontology" . "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$"^^ . . "IoT-lite Ontology" . . "^[a-f0-9]{32}$"^^ . . . "https://cd-code.org/c-mods/$1"^^ . "http://sweetontology.net/humanTechReadiness/$1"^^ . . . . . "obo" . "wikipathways" . . . . "The cBioPortal for Cancer Genomics" . . "physiology" . . . . . . "anatomy" . . . . "genome/gene" . "photon science" . . "Pathguide" . . . _:Nbde193958ac24fc093b59b7ce040d562 . . "Melek Chaouch" . "ontology" . . . . . "dto" . . "geo" . . . "^ps\\d+$"^^ . "ddi.typeoftranslationmethod" . . . "0000093"^^ . . "false"^^ . "metabolite" . "obo" . . "Web Elements" . . . . "false"^^ . . . "viperdb" . . "organism-specific databases" . "simulation"^^ . "Henning Hermjakob" . . "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip"^^ . . . "gtex" . "O80725"^^ . . "http://sweetontology.net/stateSystem/"^^ . "tib.io" . . "Cell line collections (Providers)"^^ . . . . "Eric P. Nawrocki" . . "http://sweetontology.net/reprDataProduct/"^^ . "3d structure" . . "http://sweetontology.net/matrIndustrial/$1"^^ . . "This ontology describes the car's attributes, branches and signals defined in the Vehicle Signal Specification."^^ . . . "http://fossilworks.org/?a=referenceInfo&reference_no="^^ . "4214"^^ . "sweet.phm" . . . . . . "RGD Disease Ontology" . . "Peruvian Clinical Trial Registry" . . "gnome" . . . "^\\w+$"^^ . . . "Rice Ontology" . . "genome" . . "taxonomy" . . "Ontology of Core Data Mining Entities" . . . "ceph" . "An ontology that enables characterization of the nature or type of citations, both factually and rhetorically."^^ . "false"^^ . . "conferences" . "mirte" . . "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1"^^ . . . . "school type" . "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html"^^ . . "agsd" . . . . "Leszek Vincent" . . . "false"^^ . "MIRIAM Registry collection" . . . . . . "https://aopwiki.org/stressors/"^^ . . "IntAct Molecule" . "subject" . . . . . . . . . "NeXusOntology" . . . . . . . . "dsm5" . "ecology" . . "false"^^ . . . . . . . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Memory Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Memory Consortium members appropriate for maintaining this collection." . "pubchem.cell" . . . "false"^^ . . . . . . . . . . "physiology" . . "miscellaneous" . . "^[A-Za-z_0-9]+$"^^ . "https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term="^^ . "https://bioregistry.io/pesticides:"^^ . . "SWEET Ontology Relationships Human" . . . . . . . "NASA GeneLab" . "^\\d+$"^^ . "false"^^ . . "https://nfdi.fiz-karlsruhe.de/nfdi4dso/"^^ . . "http://data.europa.eu/ett/kos/c_"^^ . "101"^^ . . . . . "Animal Genome QTL" . "bioregistry"^^ . . . . . . . . "http://aber-owl.net/ontology/$1/#/Browse/" . "false"^^ . "false"^^ . . . . . . . . . "https://www.findacode.com/code.php?set=ICD10PCS&c="^^ . . "Chris Hunter" . "Genetic and Rare Diseases Information Center" . . . . . "tib.mt" . . "2008-005144-16"^^ . . "https://abrc.osu.edu/stocks/number/SALK_$1"^^ . . "Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc."^^ . . . "BioMagResBank" . "false"^^ . . . "experimental plant" . . "http://erop.inbi.ras.ru/result2.php?PepName=$1"^^ . . "Accurate"^^ . . . . . . . . "bibliography/documents" . . "ontology" . . . . "biodiversity" . . . . "dockerhub.repo" . . . . . . . "https://cellmodelpassports.sanger.ac.uk/passports/"^^ . . "https://bioinfo.cristal.univ-lille.fr/norine/result.jsp?ID=$1"^^ . . "https://bioregistry.io/hovergen:"^^ . . . "0000001"^^ . "ontology" . "ontology" . "http://purl.obolibrary.org/obo/AGRO_$1"^^ . "aggregating"^^ . . "tgd" . "structural biology" . "http://cor.esipfed.org/ont/earthcube/MOLA_$1"^^ . . . . "The Ambystoma Genetic Stock Center (AGSC) maintains a breeding colony of Mexican axolotls (Ambystoma mexicanum) and distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. [from homepage]"^^ . . "554"^^ . "neuroscience" . . "life science" . "http://sweetontology.net/stateTimeFrequency/"^^ . . . "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."^^ . "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications."^^ . "^\\d{7}$"^^ . . . . . . "graingenes.symbol" . "013681"^^ . "false"^^ . "http://rdf.geospecies.org/ont/geospecies#"^^ . . "feolo@ncbi.nlm.nih.gov" . . "http://www.kegg.jp/entry/"^^ . . . . "CORDIS Legal Basis" . . . "disease" . . . "ontology" . "^\\d+$"^^ . "echobase" . "false"^^ . "wikidata" . . "An ontology for modeling and understanding of pharmacokinetics in biological systems."^^ . . . "001"^^ . . "fly" . . . . "gudmap" . . "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/"^^ . "The AHOL ontology (Animal Health Ontology for Livestock) was built collaboratively within a network of experts in the livestock health field, in order to describe production diseases. Its structure is based on the type of disease: communicable, non communicable, genetic, metabolic, physical or psychological. The properties of each disease are related to associated symptoms (the expression of a phenotypical character), the affected organism (livestock, poultry, mammals, fishes) or the one causing the disease (virus, bacteria, fungus, parasite)."^^ . . "7dfd3f10-d410-45a4-983d-8fbd6dfbc374"^^ . "SWEET Ontology Realm Region" . "https://vocabularies.cessda.eu/vocabulary/ModeOfCollection?lang=en#code_"^^ . . "w3c rec" . "false"^^ . "Agilent Probe" . . . "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"^^ . . . "nextprot.family" . . "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]"^^ . "2329"^^ . "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1"^^ . "^\\d+$"^^ . "^\\d{4}$"^^ . . "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . . . . "sweet.phatmot" . "28"^^ . "false"^^ . . "obo" . . "rna" . "ontology" . "false"^^ . "knowledge and information systems" . "art history" . . . . . "^[A-Za-z][A-Za-z0-9]+$"^^ . . "Regulatory Elements Database for Drosophila" . . "^\\d{8}$"^^ . "General Data Format" . "SCTID_2010_1_31" . . . . . "obo" . . . . . . "organism-specific databases" . "false"^^ . "The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]"^^ . "SWEET Ontology Phenomena Geologic Tectonic" . "Christian-Alexander Dudek" . "pathogen" . . . "G2P02419"^^ . . . . "biomedical science" . . . "molecular entity" . _:Nb20a114a9ea0451f839b5c8ad06d179e . . . "oryzabase.reference" . "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp="^^ . "genetic variation" . . "economics" . "metabolite" . "health/disease" . "Identifier for an animal, plant, or microorganism from the fossilworks website"^^ . "Simon Cox" . . . . _:N478a5b2116284c7b8e7521eda4f9170e "cozzone@ibcp.fr" . "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . . . "http://www.conoserver.org/?page=card&table=protein&id="^^ . . . . . . . "http://classyfire.wishartlab.com/tax_nodes/C$1"^^ . "fid move" . "https://emea.discoverx.com/catalog/"^^ . . . "BibliographicRecord"^^ . "SWEET Ontology Phenomena Ocean" . "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NDFRT&code="^^ . "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis."^^ . . . "Medical Dictionary for Regulatory Activities Terminology" . "A"^^ . . . "obo" . . "ISBN-10" . "https://www.thaiclinicaltrials.org/show/"^^ . . . "0000071"^^ . . . "identifier for an educational organization issued by the UK Register of Learning Providers"^^ . "ess" . . . "lschriml@som.umaryland.edu" . "nuclear magnetic resonance spectroscopy" . "SWEET Ontology Material Energy" . . . . "protein" . . . . "life sciences, biology" . . . . . . "TTD Target" . . . . . "ontology" . . "true"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Representative"^^ . "w3c rec" . "0000041"^^ . . . _:Ncb203214d995461abc3b3e6ffb4b0013 "Andrzej Elzanowski" . "Ambystoma Genetic Stock Center" . "A tag in the ChemBioSys data platform"^^ . . . "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments."^^ . . . "rec" . "ontology" . . . . "^[0-9]{15}[0-9X]{1}$"^^ . "sequence" . . "1664"^^ . "^\\w{3}\\d{5}(\\.\\d+)?$"^^ . . . "Bill Hogan" . . "ontology" . _:N4d840c03ee7d428d9d381c1254ef5dce "Stephan Schurer" . "classification" . . . "Charge"^^ . . . "false"^^ . . "0000027"^^ . "https://purls.helmholtz-metadaten.de/emg/EMG_"^^ . "gene family" . . . . "100394"^^ . . "chemical entity" . "cell/organelle" . "The World-2DPAGE database" . "^\\d+$"^^ . "http://ontology.bonsai.uno/core#"^^ . . "life science" . . . . . . . "chemical biology" . "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI."^^ . "obo" . "biorxiv" . . . . . "pubchem.bioassay" . _:N6ae51ff7674d4620ad19661421c5f8da "LOV_migration" . . . . . "^\\d{3}\\.\\d{2}$"^^ . . "false"^^ . "false"^^ . "https://labsyspharm.github.io/lspci/$1"^^ . . . . _:Nba62dd7a462f4cb8ad2db7784cdcc3ef . . "google.book" . . . . "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"^^ . . "0000440"^^ . . . "https://www.kegg.jp/entry/"^^ . "6000122"^^ . "49"^^ . "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1"^^ . . "molecule" . . "PMH0001144"^^ . . . "Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center."^^ . "classification" . . . . "false"^^ . . "community care" . "1.10.8.10"^^ . "learning material" . . "false"^^ . . "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$"^^ . . . "The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)"^^ . . . . "^\\d+$"^^ . . . "Battery Interface Ontology" . "nfdi4ing" . "ontology" . . . . "portal" . . "disease" . . "https://id.loc.gov/vocabulary/languages/"^^ . . . . . "http://purl.obolibrary.org/obo/GNO_"^^ . "An issue on the Information Artifact Ontology GitHub issue tracker"^^ . "false"^^ . "^\\d+$"^^ . "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1"^^ . . "omics" . . . "Orphanet" . "false"^^ . "http://purl.obolibrary.org/obo/GOREL_"^^ . . . . . . "HOSO is an ontology of informational entities and processes related to healthcare organizations and services."^^ . . "https://scicrunch.org/resolver/RRID:IMSR_TAC_"^^ . "antibodies" . . "other subjects" . "ontology" . . "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"^^ . . "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$"^^ . . "state solid" . "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins."^^ . . "http://www.w3.org/2006/time#$1"^^ . . "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence."^^ . "PF11_0344"^^ . . . . . "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_"^^ . . . . . . "false"^^ . . . "do12@sanger.ac.uk" . "true"^^ . "cido" . . "true"^^ . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Precipitation"^^ . . "false"^^ . . . . "phenotype" . "sabiork.ec" . "Dublin Core Metadata Initiative Terms" . "interaction" . "^\\d{7}$"^^ . . . . . . "agriculture" . . . "UBERON Issue Tracker" . . "ontology" . "^\\d{7}$"^^ . . . . . "NucleaRDB" . . . "mmp.db" . "drugbank" . . "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites."^^ . . . "BEI Resources" . . . "https://cordis.europa.eu/project/id/"^^ . . . "false"^^ . "computer science" . . . . . . "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession="^^ . "^BSU\\d{5}$"^^ . . "http://sweetontology.net/propSpeed/"^^ . "gist" . "23"^^ . . "ontology" . . "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#"^^ . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene."^^ . . . "COMe" . . . . . "DrugBank Salts" . "RiceNetDB Reaction" . "http://sweetontology.net/propSpace/"^^ . "dai.thesauri" . "small molecule" . . . . . . "FB" . . "false"^^ . "http://purl.obolibrary.org/obo/MFO_$1"^^ . . . . . "false"^^ . "https://www.icd10data.com/search?s="^^ . "Metabolic Atlas Reaction" . . "http://purl.allotrope.org/ontologies/quality#AFQ_"^^ . "disease" . "0278"^^ . . "false"^^ . . . "ontology" . . . . . "http://purl.obolibrary.org/obo/HABRONATTUS_$1"^^ . "ecology" . . "SNR17A"^^ . "1068"^^ . . "nfdi4chem" . "0000002"^^ . . . "hc.trial" . . "long-finned-pilot-whale"^^ . . "http://www.hgmd.cf.ac.uk/ac/gene.php?gene="^^ . "biology" . . "CID" . "numerical identifier for a person in ZOBODAT, a bibliographic database of mostly German-language works on zoology"^^ . . "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . . . . . . "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object="^^ . . "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1"^^ . "4DNESWX1J3QU"^^ . "00000099"^^ . . "christian.hauschke@tib.eu" . . . "life science" . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Common Bean Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "general & upper" . . . "DBLP Schema" . "SABIO-RK Compound" . . . "faseb list" . "noncodev4.gene" . _:N5027f7f573694a18bf84253ea60826c0 . . . "ontology" . . . "DAPK1"^^ . "http://vocabularies.bridgedb.org/ops#"^^ . . . "false"^^ . "Amphibian taxonomy" . . . . "scancerrna" . "Jose P. Faria" . . "An institution in the ChemBioSys data platform"^^ . "Brett G. Olivier" . . . . "http://purl.obolibrary.org/obo/ZECO_"^^ . . . . "false"^^ . . "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations."^^ . "Yam Ontology" . . "nfdi4cat" . . . "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1"^^ . . "http://sweetontology.net/phen/$1"^^ . "^\\d{7}$"^^ . . . . "http://purl.allotrope.org/ontologies/quality#AFQ_$1"^^ . "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation."^^ . . . . . . . . . . _:N9b19b2f7df10441eb3cd256ad2b0307f . "https://osf.io/$1"^^ . "Human BioMolecular Atlas Program Donor" . . . . . "Universal Spectrum Identifier" . "cdna/est" . . "material science" . . . . . . "http://purl.obolibrary.org/obo/LEPAO_"^^ . . . . . . . "http://ciliate.org/index.php/feature/details/"^^ . "sweet.phgs" . . "http://www.scopus.com/record/display.url?origin=inward&eid="^^ . . "http://www.pathguide.org/fullrecord.php?DBID=$1" . "https://vocabularies.cessda.eu/vocabulary/LanguageProficiency?lang=en#code_"^^ . . "geologic basin" . . . "Pierre-Yves Vandenbussche" . . _:N1eedfa51866b48bbaeb66be22ef3ae72 "po-discuss@plantontology.org" . . . . . . . "http://kgi.services.base4nfdi.de/entity/$1"^^ . "jax" . . "8000221"^^ . "MetaCyc" . "^\\d+$"^^ . . "http://www.bindingdb.org/rwd/entry/$1"^^ . . "realm" . "https://www.ndexbio.org/viewer/networks/$1"^^ . "loinc" . . "false"^^ . . . . . . . "merops.inhibitor" . "KEGG" . "http://www.w3.org/2003/g/data-view#"^^ . . "orphanet.ordo" . . "chemical compound" . "https://ec.europa.eu/info/funding-tenders/opportunities/portal/screen/how-to-participate/org-details/"^^ . . . "false"^^ . . . . . . . "http://genomics.senescence.info/genes/details.php?id="^^ . . . "vectorbase" . . . "International Committee on Taxonomy of Viruses Ontology" . "Food Interactions with Drugs Evidence Ontology" . "https://docs.gaia-x.eu/ontology/development/classes/$1"^^ . "Scientific Evidence and Provenance Information Ontology" . "biochemistry" . . . "human" . . "coypu.emdat" . "http://uri.gbv.de/terminology/datacite-resourcetypegeneral/$1"^^ . . "E13035"^^ . "kenom.material" . . "macie" . . . "lncipedia" . "sweet.stsp" . . "molecule" . "https://discover.pennsieve.io/package/"^^ . . . . "false"^^ . . "A controlled vocabulary (Terminology) for biological taxa \"Higher Classification - Kingdom (=Regnum)\". Based on GBIF and CoL."^^ . . . . . . . "^\\d+$"^^ . . "^\\d+$"^^ . . "datacite.date" . "SNOMEDCT_US_2023_10_01" . . . . . "https://w3id.org/kim/hochschulfaechersystematik/"^^ . . . . . . _:Nb2408a401a1244369bea7035a5ed22a7 "mohamed-el-amine.boukerfa@inrae.fr" . . "bibliography/documents" . . . . . . . "http://sweetontology.net/propMass/$1"^^ . "http://www.w3.org/ns/shacl#"^^ . "NFDI4Memory Collection" . "AMMOD Metabarcoding Ontology" . . . . . "ribosome profiling" . . . "This ontology is a formal representation that captures the fundamental concepts and their relationships to one another in the field of curriculum design and implementation of the German school system."^^ . "lifengcheng@zju.edu.cn" . . "sweet.propt" . "massive" . . "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information."^^ . . "https://www.datanator.info/metabolite/"^^ . . "A Product Code Number (PCN) assigned by the Animal and Plant Health Inspection Service (APHIS)'s Center for Veterinary Biologics (CVB) to veterinary biological products such as vaccines, bacterins, antibodies, diagnostic products, antitoxins, bacterin-toxoids, and toxioids approved for veterinary use by the United States Department of Agriculture Veterinary (USDA). A quarterly release, as PDF, can be found [here](https://www.aphis.usda.gov/sites/default/files/currentprodcodebook.pdf).\n\n The PDF document states (verbatim): The alphanumeric system used for product codes provides for a six-digit number of number-letter combination to be assigned to each product, i.e., the first digit denotes product types; second and third, group by agents; fourth, the viability of vaccine, (live, killed, modified live, etc.); fifth, substrates; and sixth, miscellaneous variables"^^ . . "Open Geospatial Consortium Simple Features Vocabulary" . . . . . . . . . "fair data spaces" . . "585"^^ . . "https://vocabularies.cessda.eu/vocabulary/ModeOfCollection?lang=en#code_$1"^^ . . "The Cell Cycle DB" . . . . . . "https://cropontology.org/rdf/CO_335:"^^ . "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures."^^ . "0000005"^^ . "https://publons.com/researcher/"^^ . . "false"^^ . "bibliography/documents" . . . "^\\d+$"^^ . . "enzyme and pathway databases" . "ddi" . "ncbigi" . . "^\\d+$"^^ . . . . . "^\\d{7}$"^^ . . . . . "drug interaction" . . . . . "expressed sequence tag" . "This vocabulary and grammar defines which types of objects are admissible to the MathAlgoDB - the algorithm knowledge graph - and by which properties they can relate. All in all five classes, \"problem\", \"algorithm\", \"benchmark\", \"software\", \"publication\", are defined, as well as a minimal but intuitively intelligible number of properties. As opposed to the more liberal WikiData, MathAlgoDB relies on the strict adherence to the ontology to provide a reliable machine-readable database of (numerical) algorithm knowledge. [from homepage]"^^ . "drug name" . . . "biological regulation" . . . . "http://uri.gbv.de/terminology/datacite-relatedidentifiertype/$1"^^ . . . "SWEET Ontology State Solid" . . . . . . "vegbank" . . "pubchem.compound" . . . . "^[a-zA-Z]+-[a-zA-Z0-9()]+(-[a-zA-Z0-9]*)?$"^^ . . "nmrXiv project" . . "These so-called. 'Hessian system' is a system of cultural and historical museums. It consists of 18 main groups. Each main group has subgroups (previously up to 12), and each subgroup names are led by concrete objects example, belong to this subgroup."^^ . . . . "protein" . . "CHEBI" . "The base ontology of the ABCD Standard."^^ . "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments."^^ . "Renato Iannella" . "false"^^ . "9008500"^^ . . "Circular double stranded DNA sequences composed" . "http://www.cathdb.info/cathnode/$1"^^ . . . . "Daniel Garijo" . . . . . "PWY-1042"^^ . "0002005"^^ . . "Medical Action Ontology" . "false"^^ . . . . "hog" . . "false"^^ . "organism" . "AmoebaDB" . . "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research."^^ . . "Vertebrate Homologous Organ Group Ontology" . . . "The type of date, if possible, following the RKMS‐ISO8601 standard."^^ . "The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge."^^ . "fid baudigital" . . . "ehdaa" . "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . . "insertion"^^ . . . "^\\d+$"^^ . . . . . "^\\d{7}$"^^ . "immunology" . . . . "representation data service validation" . "BIOMD0000000048"^^ . . . . "ecacc" . . "^\\d{7}$"^^ . "Vivek Krishnakuma" . . . . . . . . . . "AirPollution"^^ . . . "annotation" . . . . . . . "tib.lis" . . "reecehart@gmail.com" . . . . "nicolas.terrapon@univ-amu.fr" . . . . . "ASPL0000349247"^^ . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . "Dimension"^^ . . . "^KGR\\d+$"^^ . . "cell/organelle" . "organism" . . "assay" . "neuroscience" . . . "DataPLANT Collection" . . "blast" . . . . "The Thesaurus for the Social Sciences (TheSoz) contains about 12,000 entries, of which more than 8,000 are descriptors (authorized keywords) and about 6,000 non-descriptors. Topics from all disciplines of the social sciences are covered. This SKOS version of the thesaurus contains descriptors and non-descriptors in four languages (German, English, French, and Russian) as well as links to the TheSoz Classification, the STW Thesaurus for Economics, the AGROVOC Multilingual Thesaurus, and to DBpedia."^^ . . . "ontology" . . . . . . . . "false"^^ . . "The DOME registry is a curated set of papers related to machine learning methods in biology, each with its own unique DOME identifier."^^ . "https://dialnet.unirioja.es/servlet/articulo?codigo=$1"^^ . . . . . . "bibliography" . "0000015"^^ . "AffectedCommercialFlow"^^ . "educational levels"^^ . "dna" . "EU Clinical Trials" . . . . . . "false"^^ . "http://purl.obolibrary.org/obo/MP_"^^ . . . . . . "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data."^^ . "20560"^^ . . . . . "ontology/terminology/nomenclature" . "^CHEMBL\\d+$"^^ . "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1"^^ . . . . . . "smr@stowers.org" . . . . "EMD-1001"^^ . . . . . . . "false"^^ . "https://ec.europa.eu/esco/lod/static/model.html#"^^ . . . "structrual bioinformatics" . . "https://www.inaturalist.org/users/$1"^^ . . "rxno" . . . . . "davidos@ebi.ac.uk" . . . "ASZ"^^ . "ontology" . . . "pathbank" . "virmirdb" . . . . . "http://www-bionet.sscc.ru/sitex/index.php?siteid="^^ . . "true"^^ . "ontology" . . "https://urgi.versailles.inra.fr/gnpis/#result/term="^^ . . "xiezhi@gmail.com" . . "Mouse Developmental Anatomy Ontology" . "http://rssf.i2bc.paris-saclay.fr/NAPP/Niveau2.php?specie="^^ . . . . "digital planning and construction" . "Audubon Core Subtype Controlled Vocabulary" . . . . "ontology" . "LegalPerson"^^ . "http://purl.obolibrary.org/obo/FIDEO_$1"^^ . . . . . "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies."^^ . "^\\d{7}$"^^ . . "false"^^ . . "https://vocabularies.cessda.eu/vocabulary/CharacterSet?lang=en#code_$1"^^ . . "http://purl.org/cerif/frapo/"^^ . . "chemistry" . "https://www.kegg.jp/brite/"^^ . . "EDAM Format" . "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"^^ . . . . . "false"^^ . . . "^\\d{6}$"^^ . . . . . . . "nfdi4ing" . . "0001157"^^ . . . "Anna L. Kaysheva" . . "Prefix Commons" . . . . . "http://www.proteinmodelportal.org/query/uniprot/$1"^^ . "seed.role" . "ncbiTaxUID" . "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_"^^ . "https://vocabs.acdh.oeaw.ac.at/oeai-materials/$1"^^ . "soreac" . . "https://mmp.sfb.uit.no/databases/marcat/#/records/"^^ . "CLARIN Concept Registry" . . . "https://rarediseases.org/?p="^^ . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Thickness"^^ . "SWEET Ontology State Physical" . "life sciences, biology" . "https://www.ncbi.nlm.nih.gov/medgen/"^^ . . . . . . "jcrb" . . . . . . "http://terminology.lido-schema.org/recordType/"^^ . "http://purl.org/linked-data/cube#"^^ . "true"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Knowledge Domain"^^ . . . . . "CAE46076"^^ . . . . . . "false"^^ . "reagent" . . "^\\w+$"^^ . "http://terminology.lido-schema.org/termMaterialsTech_type/$1"^^ . "BulkDensity"^^ . "SWEET Ontology Realm Ocean Floor" . . "genetic variation" . . "6"^^ . . . "Global LEI Index" . . . "SNOMEDCT_US_2022_09_01" . "geographic location" . . . . "eol.schema" . "sam.griffiths-jones@manchester.ac.uk" . . "KEGG_DGROUP" . . . "^\\d+$"^^ . . . "dna" . . "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins."^^ . . . "genome/gene" . "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"^^ . "https://www.uniprot.org/database/$1" . "AGRO" . "biopragmatics/bioregistry/416"^^ . . . . "model organism" . . . . . "http://www.orpha.net/ORDO/Orphanet_"^^ . "Five Stars of Online Research Articles Ontology" . . "http://purl.obolibrary.org/obo/ECOCORE_$1"^^ . . . "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/"^^ . . . "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work."^^ . "http://www.w3.org/2004/02/skos/core#"^^ . "organism-specific databases" . . . . "cto" . "Melanoma Molecular Map Project Biomaps" . . . "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community."^^ . . . "ontology" . . . . . . "structure" . . . . . "https://aopwiki.org/events/"^^ . "life cycle" . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"^^ . . "false"^^ . "INSPIRE theme register" . . "water management" . "ExAC Gene" . . "vendor" . "taxonconcept" . . . . . . . . "organism-specific databases" . . "psi-mi" . "frbr" . "European Genome-phenome Archive" . "biomedical science" . . "life cycle stage" . "A vocabulary for annotating vocabulary descriptions" . . . . "GenPept" . "false"^^ . "^\\d{4}$"^^ . . "https://www.cellbankaustralia.com/$1.html"^^ . . . . "wosid" . . . "Matthew B Jones" . . "method" . . "health science" . "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1"^^ . "Gemma L. Holliday" . . . . "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes."^^ . "27"^^ . . "si.unit" . . . . "TRL"^^ . . "MAR11851"^^ . "life sciences" . . "Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years."^^ . . "http://purl.obolibrary.org/obo/VBO_$1"^^ . "An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc."^^ . . . "true"^^ . . . "narcis" . "genome" . . . . "http://aopkb.org/aop_ontology#"^^ . . "plant" . . . "hpath" . "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid="^^ . "http://purl.obolibrary.org/obo/GO_"^^ . "diapriid@gmail.com" . . . . "Pubchem" . . "shareloc" . "false"^^ . "health/disease" . . . . . "Biotin_biosynthesis"^^ . . "false"^^ . . "https://www.zobodat.at/personen.php?id="^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Heliosphere"^^ . . "http://www.wikidata.org/entity/$1" . "co_370" . . "space" . . . . . . . . "false"^^ . . . "false"^^ . . . . "https://hl7.org/fhir/us/$1"^^ . . "apollosv" . . "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u"^^ . . . . "centrally registered identifier" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Count"^^ . . . "http://sabiork.h-its.org/reacdetails.jsp?reactid="^^ . . "somapa" . "mediadive.medium" . . "GR_QTL" . "chemical structure" . . . . "false"^^ . . "premis" . . . "http://purl.obolibrary.org/obo/BILA_"^^ . "pandura@mrc-lmb.cam.ac.uk" . . "6VDC956"^^ . . "kronkcj@mail.uc.edu" . "D0N5OV"^^ . "LOC_Os01g49190"^^ . "ontology" . "protein" . "SHACL Node Expression" . "^[0-9a-f\\-]+$"^^ . "ontology" . . . . "Val Wood" . "zfin" . . . . "http://lisanwanglab.org/DASHR/entry/$1"^^ . "^m\\w+$"^^ . . "URS0000759CF4"^^ . . "lrmi.educationalaudiencerole" . . . . . "34665743"^^ . . . . . "false"^^ . . . . "^[a-f0-9]{64}$"^^ . . . . . "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts."^^ . . . . . . "false"^^ . "^[a-zA-Z_][a-zA-Z0-9\\-_]+$"^^ . "Physiome Model Repository workspace" . "obo" . "learning resource" . "http://sweetontology.net/propIndex/$1"^^ . "false"^^ . . . "false"^^ . . . "geography" . . . "00000085"^^ . . . . "KG09531"^^ . . . . "interaction/pathway" . "false"^^ . "http://www.receptors.org/nucleardb/proteins/$1"^^ . "false"^^ . "animal model" . "Wonpil Im" . . "false"^^ . . . . . . . "The initial focus of the GS1 Web Vocabulary is consumer-facing properties for clothing, shoes, food beverage/tobacco and properties common to all products. [from homepage]"^^ . . . "The hu.MAP integrates several large scale protein interaction datasets to obtain a comprehensive view of protein complexes."^^ . "peteremidford@yahoo.com" . . "https://search.dalia.education/communities/"^^ . "ontology/terminology/nomenclature" . . . "nfdi4culture.cto" . . . . . "nucc.taxonomy" . . "14"^^ . . . "00030015"^^ . . "imp10873"^^ . . . "201022999"^^ . "^\\d{7}$"^^ . . "Saccharomyces Genome Database" . "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1"^^ . "http://purl.allotrope.org/ontologies/"^^ . "true"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Star"^^ . "true"^^ . . _:N2868cc9f10984e2c8e290ce59a3c4198 "kpetersen@who.int" . . . "compulyeast" . "statistics" . . . . . "https://www.grid.ac/institutes/"^^ . . . . . "http://purl.obolibrary.org/obo/GSSO_$1"^^ . . . "false"^^ . . "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." . "sumso" . . . "Rahuman Sheriff" . . "genome-wide association study" . "ontology" . "Japan Consortium for Glycobiology and Glycotechnology Database" . . "^\\d+$"^^ . "astrophysical heliosphere" . . . . . . . "entrez gene/locuslink" . "diabetesomic" . "cpd15380"^^ . "Stian Soiland-Reyes" . . "379741"^^ . . . "false"^^ . "I31.952"^^ . "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" . . . . "false"^^ . . "single-cell multimodal omics" . "false"^^ . . . "4776"^^ . "3d structure databases" . "https://www.clinicaltrials.gov/study/$1"^^ . "https://biofactoid.org/document/$1"^^ . . "Interdisziplinäre Forschungsfeldklassifikation" . . "disease" . "ctri" . . . . "genecards.geneannot" . . "http://sweetontology.net/phenWave/$1"^^ . "genomics" . . . . "fbdv" . . . "recombinant inbred rat" . . . . . "http://purls.helmholtz-metadaten.de/cdos/cdco/"^^ . . "zp" . . "false"^^ . . "DataPaper"^^ . "DAML Periodic Table of the Elements" . "TIB Terminology Collection" . "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus="^^ . . . . . . . "sostv" . "^\\d{7}$"^^ . . "false"^^ . . "http://sweetontology.net/propCount/"^^ . . . "http://www.humanproteomemap.org/protein.php?hpm_id="^^ . . "Traits and phenotypes of flowering plants occurring in digitized Floras"^^ . "enzymatic reaction" . "https://www.researchgate.net/profile/$1"^^ . _:N478a5b2116284c7b8e7521eda4f9170e . "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary"^^ . "A free dictionary"^^ . . . . "https://www.crd.york.ac.uk/PROSPERO/view/$1"^^ . . "saref.ehaw" . "FuncBase Human" . "interaction/pathway" . . . . . "http://zinc15.docking.org/substances/$1"^^ . . "^\\d+\\-\\d+\\-\\d+$"^^ . . "false"^^ . "false"^^ . "https://www.ebi.ac.uk/gwas/studies/$1"^^ . . "https://web.expasy.org/cellosaurus/" . "Pathway Commons" . . . . . "1"^^ . . "Medical Subject Headings Vocabulary" . . . "true"^^ . . "dentistry" . . . . . "SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library."^^ . "^\\d+$"^^ . . . . . "protein" . "cell line" . "http://purl.uniprot.org/annotation/$1"^^ . "^ENSG\\d{11}$"^^ . . "false"^^ . "^BAMSC\\d+$"^^ . . "taxonomy" . . . . "^S\\d+$"^^ . . . "This ontology integrates cell type markers for cells in the Cell Ontology from various sources along with details of marker context (anatomical context, assay), confidence (where available) and provenance. [from repository]"^^ . . . "false"^^ . . . "http://thesauri.dainst.org/en/concepts/$1"^^ . . "mbrochhausen@uams.edu" . "synbip.epitope" . . . "tib.fto" . "Franziska B. Grieder" . . . "qualities" . "faseb list" . "https://www.eionet.europa.eu/gemet/en/group/$1"^^ . "life science" . . "http://sweetontology.net/realmCryo/"^^ . "pseudogene" . . . . . "false"^^ . "pesticides" . "phenomena" . . "https://cropontology.org/rdf/CO_336:"^^ . . . . "false"^^ . "obo" . . "http://scop.berkeley.edu/sid=$1"^^ . "http://purl.obolibrary.org/obo/DINTO_$1"^^ . "^\\d{4}-\\d+-\\d+-\\d+$"^^ . "Access"^^ . . "http://www.kegg.jp/entry/"^^ . "true"^^ . . "^\\d+$"^^ . "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases."^^ . "https://www.ebi.ac.uk/ena/browser/view/"^^ . . "agriculture" . . "MycoBrowser marinum" . . "false"^^ . . . . . "false"^^ . . . . "subject agnostic" . . . . . . "^\\d+$"^^ . "interaction/pathway" . "Research Activity Identifier" . . . . "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Brassica Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "false"^^ . . "geoinformatics" . . "OntoSpecies is an ontology developed for representing chemical species."^^ . . . . . . "zachll@umich.edu" . . . "biomedical science" . "T0599"^^ . . . "org" . . . . "1023371"^^ . "patrice.buche@inrae.fr" . . . . . "phenotype" . "drug" . . "http://scop.berkeley.edu/sccs="^^ . . _:N9f41ec92cf964f2fae5707ae358c9874 . "vivo" . . . . "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)"^^ . "false"^^ . "Carlo van Driesten" . . . "epidemiology" . . _:Nfac65eae211d469b908b4553b679e0b0 "custserv@nlm.nih.gov" . . . . . "ontology" . . . . "http://www.jstor.org/stable/"^^ . "https://www.vmh.life/#gene/"^^ . . "http://sweetontology.net/stateTime/"^^ . "gaidet" . . . . . . "ontology" . "false"^^ . "https://www.ebi.ac.uk/interpro/set/pfam/$1"^^ . . "uspto" . . "This collection contains various brain atlases from the Allen Institute." . . . "Lists the types of persistent identifiers that CESSDA accepts as study level PIDs in its data catalogue."^^ . "^\\w+$"^^ . "building" . . . "Adverse Event Reporting Ontology" . . "bibliography/documents" . . "antimicrobial peptides" . . "false"^^ . . . "protein" . "ontology" . . "https://mediadive.dsmz.de/solutions/$1"^^ . "false"^^ . . . . . . . . . . . . . . . . . . "American Type Culture Collection" . "http://www.w3.org/2003/01/geo/wgs84_pos#"^^ . . "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . . "agronomy" . "sequence" . "transcriptomics" . "false"^^ . . "https://uniresolver.io/#did:"^^ . "agriculture" . "^[A-Za-z0-9_]+$"^^ . "false"^^ . . . "https://www.ebi.ac.uk/ols4/ontologies/fma/terms?obo_id=FMA:$1"^^ . . "Lynn Schriml" . . "false"^^ . . . "http://darcsite.genzentrum.lmu.de/darc/view.php?id="^^ . . . "PerkinElmer" . . "intenz" . . "plant anatomy" . "ontology" . "medicine" . . "^\\w{5}\\.\\d{2}\\..*$"^^ . "Asset"^^ . . "https://mycobrowser.epfl.ch/genes/$1"^^ . "MAO is an ontology for multiple alignments of nucleic and protein sequences. MAO is designed to improve interoperation and data sharing between different alignment protocols for the construction of a high quality, reliable multiple alignment in order to facilitate knowledge extraction and the presentation of the most pertinent information to the biologist."^^ . "sequence" . "bacterin" . . . . "^\\d{16}$"^^ . . . "ontology" . . . "false"^^ . "SEON provides a well-grounded network of software engineering reference ontologies, and mechanisms for deriving and incorporating new integrated domain ontologies into the network. [from homepage]"^^ . . . . "life sciences, biology" . . _:Nfecb86e96a3644afbdc7578fabbbb804 . "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types."^^ . "Pol Castellano Escuder" . "CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms"^^ . "false"^^ . . . "Dataset"^^ . "epigenetics" . "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results."^^ . . _:Neeeb0bc6134b4dc8bd2380da5d035766 . "SWEET Ontology State Time Cycle" . . . . "true"^^ . "3851"^^ . . . . "BioNumbers" . . . "^\\d+$"^^ . "metabolite" . . "Database of the dielectric properties of biological tissues."^^ . . . . "https://chemprosquare.idrblab.net/data/competitor/details/"^^ . "Common Information Model Ontology" . . "gene" . "OS-27"^^ . . "gene" . "obo" . . . . . "https://www.arabidopsis.org/locus?accession=$1"^^ . . "https://tetrahymena.vet.cornell.edu/display.php?stockid="^^ . . . . "sorepsu" . "ontology" . . . . "http://purl.obolibrary.org/obo/ZP_$1"^^ . "mmmp:biomaps" . "phenotype" . "obo" . "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e="^^ . . . "https://w3id.org/nfdi-de/dcat-ap-linkml/$1"^^ . "slime-mould" . . . "pharmacology" . "plant phenotypes and traits" . "MMAR_2462"^^ . "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance."^^ . "gene" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Volcano"^^ . . . . . . . "https://civicdb.org/links/evidence/$1"^^ . "gov.types" . "sophcy" . . . "reo" . "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra."^^ . . . . "Wikidata Entity" . . . "false"^^ . "shex" . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Function"^^ . "evm" . . . "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system."^^ . . . "https://deims.org/sensors/"^^ . . . "learning materials" . . "phenomena" . "12e8LH"^^ . . "chemical compound" . . . . "po" . . "health/disease" . . "10.1621/vwN2g2HaX3"^^ . . . . . "^\\d{7}$"^^ . . . "chemical compound" . . . "Semanticscience Integrated Ontology" . . . . "^\\d+$"^^ . . "2200934"^^ . "A representation of the variety of methods used to make clinical and phenotype measurements."^^ . . "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . . . "https://vocabularies.cessda.eu/vocabulary/TypeOfInstrument?lang=en#code_$1"^^ . . . "vocabularies" . "plant breeding" . . "http://rdfs.org/ns/void#"^^ . "nfdi4ing" . "chemical" . . "mjj@ebi.ac.uk" . . "Anthracite"^^ . . . "rna" . . . "dsmz" . "dpo" . "http://www.pharmgkb.org/disease/"^^ . "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid="^^ . . "https://data.terra.bio/ga4gh/drs/v1/objects/"^^ . . "Protein Affinity Reagents" . "SWEET Ontology State Spectral Band" . . . . . "sweet.relm" . . . . "http://sweetontology.net/human/"^^ . "nextProt" . . "nist" . . . . . . "Daniel Chivvis" . "life cycle stage" . "anatomy" . "http://wodaklab.org/iRefWeb/interaction/show/$1"^^ . . "daniel.wilson@uni-hamburg.de" . "DateTimeDescription"^^ . "OArCS is an ontology describing the Arthropod ciruclatory system."^^ . . . . . "mgnify.proj" . "soph" . . . . "This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from )"^^ . . . . . "medicine" . "NCBI Genome" . . "https://www.cellrepo.com/repositories/"^^ . "http://www.conoserver.org/?page=card&table=protein&id=$1"^^ . . "Systems Biology Ontology" . "PREMIS 3 Ontology" . "structure" . "The ESCO occupations pillar is built on ISCO-08 which serves as its hierarchical structure. ISCO-08 provides the top four levels for the occupations pillar and ESCO occupations are located at level 5 and lower. In ESCO, each occupation is mapped to exactly one ISCO-08 code. [from homepage]"^^ . . . . . . . . . . "false"^^ . "http://sweetontology.net/procStateChange/"^^ . "false"^^ . . "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term="^^ . . "social science" . . . "virology" . . . . "Benjamin Zapilko" . "authenticus" . "sweet.phw" . "iedb.mhc" . . "67035"^^ . "false"^^ . "http://syndromefinder.ncchd.go.jp/UR-DBMS/SyndromeDetail.php?winid=1&recid=$1"^^ . . . . . . . "1200"^^ . "life science" . "Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond."^^ . . . "UniProt Isoform" . "^\\d{6}$"^^ . . . "HemOnc Terminology" . . "sweet.relt" . . . "bioresource" . . . . . . . "false"^^ . "nfdi4chem"^^ . "https://biopragmatics.github.io/providers/icepo/$1"^^ . "mop" . "feature"^^ . "nfdi4ing" . . . "structure" . . "InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans and mice to microbial infection. The database covers the innate immunity interactome by integrating known interactions and pathways from major public databases."^^ . "091005"^^ . "biomedical science" . "qudt" . . . "The Bacterial and Viral Bioinformatics Resource Center (BV-BRC) annotates features onto specific genomic sequences, such as gene/protein families and their functional impacts"^^ . "false"^^ . "^(CE[0-9]{5}|WB[A-Z][a-z]+\\d+)$"^^ . . . "gene" . . "Semantic Sensor Network Ontology" . . "false"^^ . . . . . "subject agnostic" . . "Flavor and Extract Manufacturers Association" . "^LDCM\\d+$"^^ . "false"^^ . . . "Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. [from RRID]"^^ . . "https://bioregistry.io/wicell:"^^ . . . . . . . . "fair data spaces" . . "lrmi.resourcetype" . "^\\d{8}$"^^ . . . . . . . . . "https://proteininformationresource.org/cgi-bin/nbrfget?uid=$1"^^ . . . . . . . "life science" . . "protein" . . . . "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling."^^ . "obo" . "dialnet.book" . . "MSV000082131"^^ . "CATH domain" . . . . "life science" . "United States Geological Survey - National Land Cover Database" . "obo" . "ontology" . "Semantically-Interlinked Online Communities, or SIOC, is an attempt to link online community sites, to use Semantic Web technologies to describe the information that communities have about their structure and contents, and to find related information and new connections between content items and other community objects. SIOC is based around the use of machine-readable information provided by these sites."^^ . "http://purl.obolibrary.org/obo/AEON_"^^ . "The Environmental Thesaurus is a controlled vocabulary built to aid integration of the data resulting from long term ecological research and monitoring in Europe (eLTER). It provides described and semantically well defined terms for later analysis and it serves as harmonized specification of parameters in the observation and measurement of ecosystem processes."^^ . "disease" . . . . "Yeast Genome Order Browser" . . . . "bao" . "false"^^ . . "Gleaning Resource Descriptions from Dialects of Languages" . "VirGen a comprehensive viral genome resource, which organizes the ‘sequence space’ of viral genomes in a structured fashion. It has been developed with an objective to serve as an annotated and curated database for complete viral genome sequences."^^ . "SWEET Ontology Representation Data Service Geospatial" . "ecology" . "Sri Lanka Clinical Trials Registry" . . . . . . . "sempav_voc" . . "https://dini-ag-kim.github.io/amb/20231019/#"^^ . . . . . . "classification" . . . . "sorealc" . . "http://purl.org/spar/pro/"^^ . . "^([a-z]{3,5}_)?M\\d{5}$"^^ . . "International System of Units - Constants" . . . "lipid/CHOL"^^ . . . . . "The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)"^^ . "PS" . "TogoID" . . . "false"^^ . . . . . . . . "https://ontome.net/project/"^^ . . "dna" . "https://spdx.org/licenses/$1"^^ . "The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs."^^ . "KonsortSWD" . . . "A typology of sampling methods."^^ . . . "digital planning and construction" . . . . "ontology" . "http://data.europa.eu/ett/kos/c_$1"^^ . . "The aim of DALIA project is to build a platform for learning material for Research Data Management (RDM) and Data Science. The platform is based on a knowledge graph. We introduce MoDalia, the base ontology of DALIA knowledge graph. Modalia inherits some modules from EduCOR. It includes also modelling of micro -credentials and certificates"^^ . . "hasPhenomena"^^ . . "https://www.omicsdi.org/dataset/massive/$1"^^ . . "organism" . . . "Shuichi Kawashima" . . "http://purl.org/net/orth#"^^ . . . . . "food" . . "false"^^ . "http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1"^^ . "antimicrobial agent" . "0000008"^^ . . . "^MSMEG\\w+$"^^ . . "obo" . . "https://id.loc.gov/vocabulary/relators/"^^ . . . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the MaRDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying MaRDI Consortium members appropriate for maintaining this collection." . "sweet.mains" . . . . "0002058"^^ . "http://icd9cm.chrisendres.com/index.php?action=search&srchtext="^^ . . "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . "yid" . . "bioresource" . . . "^\\d{7}$"^^ . . . "life cycle" . . . . . . "https://www.clinicaltrials.gov/study/"^^ . . "https://nanocommons.github.io/identifiers/registry#"^^ . "Kidney and Urinary Pathway Ontology" . . . . . "geosparql.rule" . . . "2u4tf"^^ . . . "ontology" . . . . . "https://athena.ohdsi.org/search-terms/terms/"^^ . "structure" . . . "ISO 3166-1 Country Code" . . . . "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available."^^ . . "data coordination" . . "protein" . . . . . "https://www.kazusa.or.jp/huge/gfpage/"^^ . . . . . . "Assertion"^^ . . "scopus.publication" . . . "identifiers.namespace" . . . "kit.mtxx" . . . . . "false"^^ . "MCDS_S_0000000001"^^ . "Gavin Sherlock" . "^\\d+$"^^ . . . . "mineral" . "preclinical studies" . "method" . "phosphorylation" . "atomicMass"^^ . . . . . "Mosquito insecticide resistance" . . "developmental biology" . . "OntoBee" . . "true"^^ . "false"^^ . . "false"^^ . . . "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data."^^ . . . "sostdp" . . . . . "gfbio.botany" . "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$1"^^ . . . "sequence" . . . . "SWEET Ontology Realm Geologic Constituent" . "Chemical Analysis Ontology" . "81d0ea69a9ab134f6ba68314e982171a367d3ab739c85c5ba49701dd02170ed3"^^ . . . . "false"^^ . "http://terminology.lido-schema.org/identifier_type/"^^ . . "iot" . . "TAO_RETIRED" . "chemical structure" . . "General Multilingual Environmental Thesaurus Relation" . . "false"^^ . . . . . . . _:N889fbbd105f74a07ba7944cb6b834fe5 "sean@skm.digital" . . . . . _:N624bbcc8b96340e5823c832640ddfd50 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . . "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1"^^ . "http://purl.obolibrary.org/obo/EMPTY_$1"^^ . "education level" . "^CDBG000\\d{5}$"^^ . "false"^^ . . "https://medlineplus.gov/genetics/condition/$1"^^ . "Christopher Mull" . . "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"^^ . . . . . . . . "space location" . "botany" . . . . . . "https://mmp.sfb.uit.no/databases/marcat/#/records/$1"^^ . . . . . "bioinformatics" . . . . "cell line" . . . "achcar11"^^ . . . "protein complexes" . _:Nc85704a14d094f73856d5fa39e50393c "admin" . . "Affine"^^ . . . "A0TMC"^^ . . . "ontology" . "idpo" . . "obo" . "metaregistry" . "Hui Wu" . "^[0-9]+$"^^ . "false"^^ . . . . "163"^^ . "https://mycobrowser.epfl.ch/genes/$1"^^ . "competence" . . . _:Ne73a7501b62b4c85bb34ee7ebcd105d4 "evorao@evora-project.eu" . . "Protein Ensemble Database" . "bioinformatics" . . . . "ontology" . . "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D."^^ . . . . . "mauno.vihinen@med.lu.se" . . "System Science of Biological Dynamics project" . "Resources for modeling Open Educational Resources" . . "molecular_function" . "omics" . "https://nfdi4culture.de/ontology/CTO_$1"^^ . . "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data."^^ . "rna" . . "ontology/terminology/nomenclature" . . "Polytraits Trait Definitions" . . "false"^^ . "https://molbic.idrblab.net/data/protein/details/"^^ . "false"^^ . . . . . . . "sbml" . "msig" . _:N66cd03f22eaf4af3bd84866aa57cd186 . . . . "Semantically-Interlinked Online Communities Argumentation Ontology" . . . "ortholog" . . . "https://w3id.org/tso#$1"^^ . . "protein" . . "organism supplier" . . . "SWEET Ontology Representation Space Direction" . . "drug" . . . "drug" . . . "imsr.apb" . . . . "repository" . . . . . "Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]"^^ . "KIAA0001"^^ . "obo" . "https://id.loc.gov/authorities/$1"^^ . . "civic.assertion" . "https://saref.etsi.org/saref4ener/"^^ . "false"^^ . "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API."^^ . "Unified Foundational Ontology" . . . . . . "^\\d{7}$"^^ . . "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/"^^ . . "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-"^^ . _:Nf05d767d931e4783825bc60a5bad9396 "dvelotto@uni-bremen.de" . . . . . "60025709"^^ . . "https://grch38.togovar.org/variant/"^^ . . . "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$"^^ . . . . "transcript" . "disease" . "engineering" . "EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)"^^ . "http://purl.obolibrary.org/obo/BMONT_"^^ . . "mKIAA4200"^^ . . "LIDO Terminology Event Type" . "belongsTo"^^ . "oban" . "ChemBioSys Assay" . "metadata" . . "disease" . . . . . "ontology" . . . . "http://theworldavatar.com/ontology/ontocompchem/ontocompchem.owl#"^^ . "Assembling the Fungal Tree of Life - Category" . "REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/"^^ . . . "http://aims.fao.org/aos/agrovoc/c_"^^ . "tib.bk" . . . "puro" . . "jfernand@um.es" . . . . . . "ess" . . . . . . . "true"^^ . "fairmat" . . . "cdna/est" . . . . . . . "0000015"^^ . . . . . "rna" . . . "jmwhorton@uams.edu" . "co_341" . . "iirds.sft" . . . "false"^^ . . . "meno" . . _:Na569da8afce042d891960939db81812f . "sweet.propche" . "The coding sequence or protein identifiers as maintained in INSDC."^^ . "genetic variation" . . . "false"^^ . "architecture" . "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#"^^ . . _:Ne73a7501b62b4c85bb34ee7ebcd105d4 "d3fk" . . "bgee.gene" . . _:N3e8a1abb72f1430bac72fae7a672fe8f . . . "SNR17A"^^ . . . "^[0-9]+$"^^ . "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences."^^ . "Browser for the periodic table of the elements"^^ . . "PGOHUM00000289843"^^ . . . "http://purl.unep.org/sdg/SDGIO_"^^ . "Destatis subject classification" . . . . . . . . . . . "life cycle" . . "vmc" . "interaction/pathway" . "http://purl.obolibrary.org/obo/MFMO_$1"^^ . "Sampling Procedure" . "anatomy" . "researcher" . . . . . . . "soprocw" . . "plant phenotypes and traits" . . "0011140"^^ . . . . . . . . _:N099a1c32f93f4481a2e5d84d9be8997e "Paolo Ciccarese" . . . "subject agnostic" . . . . "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation."^^ . "https://www.nextprot.org/term/FA-"^^ . "imaging" . . . . . . . . . . "false"^^ . "C. Robin Buell" . . . "http://rs.tdwg.org/dwc/terms/"^^ . "nfdi4ing" . . "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide."^^ . . . . "1837"^^ . "https://biopragmatics.github.io/providers/scomp/$1"^^ . . "BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format."^^ . . . . . . "ttd.drug" . . "http://purl.obolibrary.org/obo/OHMI_"^^ . . . "chembl.target" . "http://ctdbase.org/detail.go?type=gene&acc=$1"^^ . . "The Euvoc ontology, published by the Publications Office of the European Union, supports the development of authority tables (Name Authority Lists or NALs), Eurovoc and EU corporate datasets. It contains a set of classes and properties enabling all the information to be expressed in multilingual format. It helps define relationships between terms and concepts across multiple domains, supporting interoperability and standardization across European Union documentation and databases. It also defines a set a commonly use properties (i.e: start date, end dates, status), and supports the reusability on common data (currencies, languages, countries).\n\nThe Euvoc ontology is maintained by the Publications Office of the European Union and disseminated on the EU Vocabularies website."^^ . "http://purl.obolibrary.org/obo/OHPI_"^^ . . "representation data product" . . . "sample" . "^([hm]\\_)?\\w+Pathway$"^^ . . . . "false"^^ . . "http://purl.obolibrary.org/obo/CTO_$1"^^ . "representation representation scientific methodology" . "false"^^ . . "false"^^ . . "terms" . . . . . "pgdso" . . . . . "000001"^^ . . "nfdi4ing" . . . . "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1"^^ . . . "The CIDOC Conceptual Reference Model (CRM) is a theoretical and practical tool for information integration in the field of cultural heritage. It can help researchers, administrators and the public explore complex questions with regards to our past across diverse and dispersed datasets. The CIDOC CRM achieves this by providing definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation and of general interest for the querying and exploration of such data. Such models are also known as formal ontologies. These formal descriptions allow the integration of data from multiple sources in a software and schema agnostic fashion. [from homepage]"^^ . "expression" . "ProtoNet ProteinCard" . "false"^^ . "loc.fdd" . "SWEET Ontology Realm Geologic Oceanic" . . "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories)."^^ . . "Ontology for manufacturing and logistics" . "false"^^ . . "International System of Units" . . "9606117"^^ . . "sweet.reabb" . . "Categories in the AFTOL database"^^ . . . . . . . . . . . . "false"^^ . . "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components."^^ . . . . "genome/gene" . . "false"^^ . . . "glycopost" . . . "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page)."^^ . . . "https://w3id.org/reproduceme#"^^ . . . . . "civic.did" . . . "1354581"^^ . . . . . "false"^^ . "earth science" . "ontology" . "sweet.repds" . . . "Human Unidentified Gene-Encoded" . . . . . "https://w3id.org/amv#$1"^^ . . . "soman" . . . . . . . "Agent"^^ . . "090801"^^ . . . "MAM01234c"^^ . "false"^^ . . . . . . . . . . "^\\d{7}$"^^ . . . "HD+118-001"^^ . . . . . "Vitro Application Ontology" . "Groups listed in GEMET"^^ . "false"^^ . "bs" . . . . . "Protein Interaction Network Analysis" . . . . "deepak.unni3@lbl.gov" . . "false"^^ . "Progenetix" . _:N3c1f4f54ab104e2c817f2d6e10a0490c "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "http://purl.obolibrary.org/obo/OGSF_"^^ . "life science" . "assays" . . . "protein" . . . . "earth science" . "https://query.biodeep.cn/metabolite/$1"^^ . . . "protein" . . . "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects."^^ . . . "tfclass" . "odc.sci" . . "27106865"^^ . . . "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature."^^ . . . . . . . . . "https://cgap.nci.nih.gov/Pathways/BioCarta/$1"^^ . . . . "representation mathematics statistics" . . . "https://ngdc.cncb.ac.cn/lncbook/gene?geneid=$1"^^ . . . "humanities" . . . "AF"^^ . . "gene" . . "A repository of software packages written in Javascript, TypeScript, and related."^^ . . . "nfdi4chem" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cryosphere"^^ . "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . "cell_biolabs" . . . . . "Confluence"^^ . "Systems, Models, and Simulation Ontology" . "http://bigg.ucsd.edu/compartments/"^^ . "LIPID MAPS" . "false"^^ . . "dbvar.variant" . "false"^^ . "^EG\\d+$"^^ . "7207"^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_"^^ . "Xenobiotics Metabolism Database" . . . "https://scholar.google.com/scholar?cluster=$1"^^ . "obo" . . . . . . "cdna/est" . . "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-$1"^^ . . . . . "false"^^ . . "https://www.ncbi.nlm.nih.gov/gene/"^^ . . . "http://www.begdb.com/index.php?action=oneMolecule&state=show&id="^^ . . . . . . . "NameRXN" . . . "Andrew C. McShan" . "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1"^^ . "Machine-readable Cataloging (MARC) List for Languages" . "DG00301"^^ . . . . . "ontology" . . . . . . . . . "baum@zbmed.de" . . "fair data spaces" . . . . . "This ontology is generated from the manually created specifications in the dbpedia mappings wiki. each release of this ontology corresponds to a new release of the dbpedia data set which contains instance data extracted from the different language versions of wikipedia. for information regarding changes in this ontology, please refer to the dbpedia mappings wiki."^^ . . . . . "0000001"^^ . . "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function."^^ . "0000016"^^ . "https://bioregistry.io/ccdc:"^^ . "pierre-alain.binz@chuv.ch" . . "social sciences" . . "false"^^ . "expression data" . "http://purl.obolibrary.org/obo/SOPHARM_"^^ . . . "Barbara Magagna" . . "https://purl.brain-bican.org/ontology/dhbao/DHBA_$1"^^ . . "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers."^^ . . . . "false"^^ . "gsherloc@stanford.edu" . "Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database"^^ . . . "https://www.ncbi.nlm.nih.gov/dbvar/variants/"^^ . . . "Gene Ontology Annotation Database" . . "structure" . . "61467"^^ . "This ontology extends the SAREF ontology for the Agricultural domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Agricultural domain."^^ . . "Describes the entity being analyzed in the study or variable. This vocabulary can also be used to describe the unit of observation, which is the unit being observed, or from which data are collected. The unit of observation can be the same as, or different from the unit of analysis."^^ . "hsa-let-7a"^^ . "ji.kang@northeastern.edu" . . "^\\w+$"^^ . . "food" . . . . . . "dragondb.protein" . "architecture" . . . "urdbms.syndromefinder" . . . "^oai\\:cwi\\.nl\\:\\d+$"^^ . "false"^^ . . . "false"^^ . . . "environmental science" . . "Cell line databases/resources"^^ . . . . . "false"^^ . . "^\\d+$"^^ . . "FooDB Food" . . "1044544"^^ . . "MycoBrowser tuberculosis" . "sweet.propef" . . . . . . "A comprehensive compendium of human long non-coding RNAs"^^ . . . . . . "ADA"^^ . . "http://purl.obolibrary.org/obo/DC_CL_$1"^^ . . . "phenomics" . . "expression" . . "gaz" . . . . . "facebase" . "https://w3id.org/semapv/vocab/"^^ . "environmental control" . . . "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?$"^^ . "life sciences, biology" . "Homologous Organ Groups" . . "work" . . "http://www.kegg.jp/entry/"^^ . . "inaturalist.observation" . . . "false"^^ . "^P\\d{5}$"^^ . . "http://www.whocc.no/atcvet/atcvet_index/?code=$1"^^ . . "ktk@netlabs.org" . . . "vendor" . "projects_to"^^ . . . "SNOMED_CT" . . "^\\d+$"^^ . . . "The PMD Core Ontology (PMDco) is a comprehensive framework for representing knowledge that encompasses fundamental concepts from the domains of materials science and engineering (MSE). The PMDco has been designed as a mid-level ontology to establish a connection between specific MSE application ontologies and the domain neutral concepts found in established top-level ontologies. The primary goal of the PMDco is to promote interoperability between diverse domains. PMDco's class structure is both understandable and extensible, making it an efficient tool for organizing MSE knowledge. It serves as a semantic intermediate layer that unifies MSE knowledge representations, enabling data and metadata to be systematically integrated on key terms within the MSE domain. With PMDco, it is possible to seamlessly trace data generation. By building on this foundation, PMDco facilitates the integration of data from various sources and the creation of complex workflows. In summary, PMDco is a valuable tool for researchers and practitioners in the MSE domains. It provides a common language for representing and sharing knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless traceability of data generation. Overall, PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain. PMDco at GitHub: https://github.com/materialdigital/core-ontology Documentation: https://materialdigital.github.io/core-ontology/docs/"^^ . . . "147298"^^ . . "\"Terminology of Anatomy of Human Embryology\" is a standard, specialising in the fields described under \"scope and data types\", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1536. This text was generated automatically. If you work on the project responsible for \"Terminology of Anatomy of Human Embryology\" then please consider helping us by claiming this record and updating it appropriately."^^ . . . "^[a-z]+(\\..*?)?$"^^ . "https://cbcb.cdutcm.edu.cn/AGD/genome/details/?id=$1"^^ . . . . "sioc.types" . . "activityPlan"^^ . . "sweet.phfi" . . . "ontology" . . "^\\d{7}$"^^ . . . "pathway" . . "Terry.Hayamizu@jax.org" . . "^\\d{8}$"^^ . "life sciences, biology" . "false"^^ . . . "metabolomics" . . . "Features of Saccharomyces cerevisiae cells, cultures, or colonies that can be detected, observed, measured, or monitored."^^ . "Benchmark Energy & Geometry Database" . . "sequence" . . . "sostsp" . "^\\d{7}$"^^ . . . . . "clustering" . "bibliography/documents" . . "false"^^ . . "health/disease" . . . "genprop" . . "van_slyke@zfin.org" . "false"^^ . . . "obo" . . . . . . "interaction/pathway" . "http://sweetontology.net/realmAtmo/$1"^^ . "electron microscopy" . . "NLXCELL conatins cell types with a focus on neuron types."^^ . . . . . "bel" . . . . . . . "Ulrik Stervbo" . . . . . . . "Financial Industry Business Ontology" . . . . . . . . "https://cran.r-project.org/web/packages/$1"^^ . . "gene expression" . . "Alloy"^^ . . "DepMap Cell Lines" . . . "ncats.bioplanet" . "MarDB" . . . "https://vocabularies.cessda.eu/vocabulary/CESSDADataCatalogueCollections?lang=en#code_"^^ . . "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id="^^ . . . "identifier for a fungus taxon in Index Fungorum"^^ . . "false"^^ . "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID="^^ . . "The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.\n\n\n![SAREF4SYST overview](diagrams/overview.png)"^^ . . "Selventa legacy chemical namespace used with the Biological Expression Language"^^ . "19803"^^ . . "mmsinc" . . . "ontology" . . . . "ontology" . . "oxburl@mmc.org" . "EISSN"^^ . . . _:N8d95c533bde94a06adc9cfe3e077bc30 "hq@hl7.org" . . . "0e39569d-ff81-4b78-9c34-b07309504d80"^^ . . . . . . . . . "orthologous" . "data acquisition" . . "mge" . "12345"^^ . . . . . "^\\d+$"^^ . . . "dna" . _:N3e8a1abb72f1430bac72fae7a672fe8f "Eric Garnier" . . "WBbt" . "gynecology" . "reaction" . . . "false"^^ . . "https://purls.helmholtz-metadaten.de/prima/experiment#$1"^^ . . "kldb" . "The PIMO Ontology can be used to express Personal Information Models of individuals. It is based on RDF and NRL, the NEPOMUK Representational Language and other Semantic Web ontologies. This document describes the principle elements of the language and how to use them. (from homepage)"^^ . . "mmo" . . "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1"^^ . "true"^^ . . "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."^^ . . "https://data.chembiosys.de/publications/$1"^^ . . "http://addgene.org/"^^ . . "false"^^ . . . _:N04b78c6840874f858d6b6c776e330be4 . "ontology" . . . . "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."^^ . . . "http://purl.obolibrary.org/obo/AAO_"^^ . "genome" . . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . . . . . . "units" . "translational medicine" . . "Rv1908c"^^ . . . "ontology" . "false"^^ . . . . . "metadata standardization" . "miriam"^^ . . . . . "pharmacist"^^ . . . "structure" . "false"^^ . . . . . "umls.mth" . "resource metadata" . . . "A canonical biomarker, which describes the composition of a measurement on a change to an entity. For example, the increase in IL6 level"^^ . "832"^^ . "wicell" . "Chlamydia"^^ . "^\\d+$"^^ . "wot.hypermedia" . "KC-0979"^^ . "C_AA001108.1"^^ . . "fisheries science" . "string" . . "http://purl.obolibrary.org/obo/CLM_"^^ . "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#"^^ . . "rdfa" . "^\\d+$"^^ . . . "false"^^ . "https://vocabularies.cessda.eu/vocabulary/TypeOfAddress?lang=en#code_"^^ . . . . . "gene" . . . . . . "^[A-Za-z0-9-]+$"^^ . . . "^\\d{7}$"^^ . . . . . . "numpy"^^ . "rnamods" . "^\\d{7}$"^^ . "small molecule" . "http://purl.obolibrary.org/obo/PROCO_$1"^^ . . . "ACYPI000159"^^ . . . "microbial ecology" . _:N206f89900cf947e9aabc643ab9fbef1d . "0000189"^^ . . . . "obo" . "CC2(C)C\\1CCC(C)/C=C/12"^^ . . . . "protein" . . "saref.system" . . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information."^^ . . . . . "molecules" . . "data transformation" . "http://purl.obolibrary.org/obo/OVAE_$1"^^ . . . . "ArchivedWebPage"^^ . "knowledge graph" . . . "false"^^ . "John G Tate" . . . "sorepm" . "The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants."^^ . . . . . . . "phenomics" . "https://cropontology.org/rdf/CO_348:$1"^^ . . . "MassIVE" . . "37232"^^ . . "sohuecons" . "false"^^ . . "journal" . . . . "integbio" . . . . . . "https://europepmc.org/article/CBA/"^^ . "Gene Ontology Registry" . . "elsst" . "Deutsche Sammlung von Mikroorganismen und Zellkulturen" . . "biomedical science" . . . "ontology" . . . . "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation."^^ . . . "https://cmecscatalog.org/cmecs/classification/unit/$1.html"^^ . . . "EDCC Taxonomy" . . "false"^^ . "traffic engineering" . . . "0000001"^^ . "sfEquals"^^ . . . . . "false"^^ . . "Literature references in Gramene"^^ . "genomics" . . . "Integbio" . . . "smart" . . "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html"^^ . "https://data.nist.gov/od/dm/nmrr/vocab/?tema=$1"^^ . "false"^^ . "matteo@cs.aau.dk" . "biomagresbank" . "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$"^^ . . . "http://flowrepository.org/id/$1"^^ . . . . . . . . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene."^^ . "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . . "Scientific research institute for neuroscience, genetics, immunology, plant biology and more."^^ . . "pharmacological family classification" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Fraction"^^ . "true"^^ . . "21692"^^ . "https://www.facebase.org/data/record/#1/isa:dataset/accession="^^ . "12791954"^^ . . . . "OENC205"^^ . . . "oidc" . "CSTR is an identifier for Common Science and Technology Resources, to provide persistent identification services for the positioning, traceability, citation, statistics and evaluation of science and technology resources."^^ . . "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam="^^ . "^(STUDY|FILE|DATASET)\\d+$"^^ . . "csd" . . . . "ontology" . "protein" . "ps048"^^ . "http://purl.org/biotop/biotop.owl#$1"^^ . . . . . "phenotype" . . "small molecule" . . "http://sweetontology.net/phenGeolFault/"^^ . . "^2\\d{4}$"^^ . "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples."^^ . . "organism-specific databases" . . "false"^^ . . "supfam" . . "person" . "Maciej Antczak" . . "repository" . "sharesAuthorInstitutionWith"^^ . . "chemistry" . . . "sample" . . . . "obo" . . . . . . . . . . . . . "Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types."^^ . . "https://www.kegg.jp/pathway/"^^ . . "https://web.www.healthdatagateway.org/dataset/$1"^^ . "^\\d{7}$"^^ . . . . . "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"^^ . "gene" . "dcatap" . "compound" . "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . "protein" . . "568815597"^^ . "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species."^^ . . . "rna" . "false"^^ . . . "sosttg" . . "method" . "genome/gene" . . . "catalog" . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes."^^ . . "chemical" . . . . . . . . . . . . . . "sostss" . "environmental science" . . "https://openenergyplatform.org/ontology/oeo/OEO_$1"^^ . "http://sweetontology.net/reprSciUnits/$1"^^ . . . . . "50583"^^ . . . "abandrowski@ncmir.ucsd.edu" . . "ontology" . . "physics" . "Modern Science Ontology (ModSci), for modeling relationships between modern science branches and related entities, such as scientific discoveries, phenomena, renowned scientists, instruments, etc. ModSci is an upper ontology that provides a unifying framework for the various domain ontologies that make up the Science Knowledge Graph Ontology Suite. The Systematic Approach for Building Ontologies (SABiO) has been followed in the development of ModSci. ModSci is a poly-hierarchical ontology that can be utilized in semantic web applications. ModSci powers two projects for semantically representing scholarly information: Open Research Knowledge Graph (for the categorization of research papers) and OpenResearch.org (for the categorization of the information about scientific events, research projects, scientific papers, publishers, and journals)."^^ . "http://cdb.iso.org/lg/"^^ . . . . . "http://sweetontology.net/phenBiol/$1"^^ . . . . "SMID-DB" . . "csv"^^ . "Clair Kronk" . "environmental science" . . . "^\\d{7}$"^^ . . . . "http://sweetontology.net/reprDataServiceReduction/$1"^^ . . "http://purl.obolibrary.org/obo/GSSO_"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Climate Zone"^^ . "Javier Millán Acosta" . . . . . "gene" . . . . . . . . . "The Creative Commons Rights Expression Language (ccREL) lets you describe copyright licenses in RDF. For more information on describing licenses in RDF and attaching those descriptions to digital works, see [ccREL](https://wiki.creativecommons.org/CC_REL) in the [Creative Commons wiki](https://wiki.creativecommons.org/)."^^ . "soreaas" . "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid="^^ . . . . "cellosaurus" . "false"^^ . "https://www.ebi.ac.uk/interpro/genomeproperties/#$1"^^ . . . . . "http://purl.obolibrary.org/obo/OlatDv_"^^ . . "Event Venue Registry" . "earth sciences" . "wave noise" . . . . "ontology" . . . . . . . "^TC\\d+$"^^ . . . "https://stemcells.nindsgenetics.org?line="^^ . . . "http://purl.obolibrary.org/obo/DC_CL_"^^ . . "https://models.physiomeproject.org/exposure/"^^ . "WormBase RNAi" . . . . . . . . . . . "PANTHER Node" . . _:Nf427a4d6ec18495ebe911761ef9e26e8 "World Health Organization" . . "http://sweetontology.net/matrBiomass/$1"^^ . . "German Federal Ministry of Education and Research Glossary" . "state storm" . "lei" . "obo" . . . . . . . "proteomics" . "MEROPS Family" . "nfdi4energy" . . . "data schema" . . . . "Tobias Hamann" . "Center"^^ . "https://go.drugbank.com/metabolites/"^^ . . . "organism" . . . . "https://genelab-data.ndc.nasa.gov/genelab/accession/"^^ . . . . . . "has responsible" . . . "https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:"^^ . . "open educational resources" . . . "false"^^ . "European Registry of Materials" . . "SWEET Ontology Phenomena Cycle" . "627"^^ . . . . "ontology" . . . . "http://purl.org/ASN/scheme/ASNEducationLevel/"^^ . "false"^^ . "https://europepmc.org/article/AGR/$1"^^ . . "Metathesaurus Names" . "strain" . "^\\d+$"^^ . . . . "Antibodypedia indexes experimental validation of antibodies and the genes for which they are targets"^^ . "Meghan Balk" . "life sciences, biology" . . "ontology" . "rna" . "Selventa legacy disease namespace used with the Biological Expression Language"^^ . . . . . . . . "^\\d+$"^^ . "nfdi4ing" . . "Gene Expression Ontology" . . . "false"^^ . . "00000674"^^ . "The pre-IND tracking number for submissions to the FDA"^^ . "false"^^ . "rism" . . . "false"^^ . . "sequence" . "gfrishkoff@gsu.edu" . . "https://crates.io/crates/$1"^^ . "false"^^ . . . "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes."^^ . "B-5720-2018"^^ . "gene" . . "Datanator Gene" . "http://sweetontology.net/matrAerosol/$1"^^ . . . "imr" . . . . "subject agnostic" . "nfdi4chem" . "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-"^^ . . "ontology" . "NFDI4Culture Collection" . "Daniel Sonenshine" . . . "classification" . . . "false"^^ . "false"^^ . "sweet.phft" . . "false"^^ . "https://ibdc.dbtindia.gov.in/icpd/study-view-home/$1"^^ . . . _:N0e2c5ce3383d4675ac3f60b4df7dc0f7 "UNESCO" . "life science" . . . . "organic chemistry" . . . . . . _:N9f41ec92cf964f2fae5707ae358c9874 "steve.baskauf@vanderbilt.edu" . . . "structure" . . "NIF Standard Ontology: Molecules" . . . "ontology" . . "https://dnasu.org/DNASU/GetCloneDetail.do?cloneid="^^ . "drug" . . . . "^CN\\d+$"^^ . . . . . . . "Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining subclasses and subproperties of SIOC terms."^^ . . . . "^(rx|fc)[0-9]{5}$"^^ . . . "https://www.nsf.gov/awardsearch/showAward?AWD_ID="^^ . "zhangzhang@big.ac.cn" . . . . . . . . "false"^^ . . . "http://search.sisuproject.fi/#/variant/"^^ . "false"^^ . . "https://flybase.org/reports/FBrf$1"^^ . . . . . . . "CAID" . "molecule" . "The OBO namespace is the top-level namespace used by Open Biological and Biomedical Ontology (OBO) Foundry ontologies."^^ . . "http://sweetontology.net/matrEnergy/$1"^^ . "vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. A mapping to species-specific anatomical ontologies is also provided. This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and we provide confidence codes and references when available."^^ . "sequence" . "Database of Aligned Ribosomal Complexes" . . "http://purl.obolibrary.org/obo/MAXO_$1"^^ . . . "ygob" . . . . "Rules for GeoSPARQL"^^ . . . "Relations in GEMET"^^ . "StoreDB Study" . _:N21490a5815794097b7d29c0b854bb063 . . . "http://sweetontology.net/realmEarthReference/$1"^^ . . . . . _:N5dda678f89af4d27868c98d0a250580e . "Name-to-Thing" . . . . . "A concept scheme that defines the primary or intended roles of the audience (beneficiary) of the resource being described."^^ . . . "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)."^^ . . . . . . . . "obo" . "0000001"^^ . "https://www.ncbi.nlm.nih.gov/snp/"^^ . "TIB Terminology Service" . . . "National Microbial Pathogen Data Resource" . . . . . . . . "https://w3id.org/babelon/"^^ . . "ror" . . "^\\d{7}$"^^ . . . . . . . . "https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/$1"^^ . "obo" . "ontology" . . "https://catalog.hathitrust.org/Record/$1"^^ . "obo" . . "https://stemcells.nindsgenetics.org?line=$1"^^ . . . . "In this ontology, we defined nine distinct categories that encompass various aspects of lifestyle factors (LSFs), creating a unified Lifestyle Factors Ontology (LSFO) across these categories. Within the context of lifestyle, we have identified nine categories that can collectively describe all LSFs, namely: 1-Nutrition, a category that covers different branches such as dietary habits, food groups, food processing and preparation, macronutrients, and micronutrients, among others. 2-Socioeconomic factors, which includes social and economic conditions such as income, wealth, education and socioeconomic status. 3-Environmental exposures, includes exposure to various environmental factors, such as air pollution, water quality, and workplace hazards, that can impact an individual’s health. 4-Substance use, covers concepts such as smoking, as well as illicit drug use. 5-Physical activities, includes regular exercise and physically demanding activities like leisure time, occupational, and household physical activities. 6-Non-physical leisure time activities, describes any activity an individual might engage in during their free time that is not a physical activity. 7-Personal care products and cosmetic procedures, covers activities related to hygiene, use of cosmetic and cleaning products as well as invasive procedures that people undergo to improve their appearance, such as cosmetic surgery. 8-Sleep, covers sleep quality, stages, and habits. 9-Mental health practices, includes the behaviors and habits related to maintaining good mental health and emotional well-being such as meditation, and psychotherapy."^^ . . . "Big"^^ . . "genome/gene" . . "KEGG BRITE" . . . . . . "hcvdb" . "genome" . . . "COG Categories" . "asteraceaegd.plant" . "PomBase" . . "nsrrc" . . . "true"^^ . . . . "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump"^^ . . . . "Higher-level classifications of COG Pathways"^^ . "http://purls.helmholtz-metadaten.de/cdos/cdco/$1"^^ . . "1458400"^^ . "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1"^^ . . "This CV, developed within the framework of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the central concepts and theoretical approaches in research on racism and right-wing extremism. The compilation is based on a systematic evaluation of the relevant national and international empirical research literature. The CV equally takes into account the different thematic (racism, right-wing extremism, discrimination) as well as methodological (qualitative research, standardised surveys, data from social media and messaging services) research strands."^^ . "harald.sack@fiz-kalrsruhe.de" . . . . . "NEPOMUK Contact Ontology describes contact information, common in many places on the desktop. It evolved from the VCARD specification (RFC 2426) and has been inspired by the Vcard Ontology by Renato Ianella. The scope of NCO is much broader though. This document gives an overview of the classes, properties and intended use cases of the NCO ontology. (from homepage)"^^ . "spradling@ciwemb.edu" . . . . . "^[0-9]{12}$"^^ . "1"^^ . . "false"^^ . "biological_process" . . . . . . . . . . . . . . . "0471491039"^^ . "GeoSPARQL Function" . . "https://orcid.org/"^^ . . . "ffdd3a7e-f82e-4600-98b1-20402e74b0a6"^^ . "http://func.mshri.on.ca/mouse/genes/list_functional_scores/"^^ . . . . "0000072"^^ . "MassBank" . "UniCarb-DB" . . "cdd" . . "agricola" . . . "ontology" . "ontology" . . "WD_Entity" . . . . . "This ontology extends the SAREF ontology for the Smart City domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Smart City domain."^^ . . . . . . "uniprot.core" . "SKOS Thesaurus Extension" . . "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1"^^ . . . . . . . . . . "fid baudigital" . . "phylogeny" . . . "chemical entity" . . "diagnosis" . . "http://purl.obolibrary.org/obo/REX_$1"^^ . . . "IRCT20080904001199N7"^^ . . "Sigma Aldrich is a life sciences supply vendor."^^ . . . "life science" . . "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1"^^ . "general & upper" . . . . . . . . "genome/gene" . . . . . "botany" . "false"^^ . "metadata" . . "insdc" . "obo" . . . . "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . . . "false"^^ . . "https://bioregistry.io/flybrain.ndb:"^^ . "protein" . "ontology" . "assay" . . "PED00037"^^ . "ontology" . "https://commonchemistry.cas.org/detail?cas_rn="^^ . . "https://www.ncbi.nlm.nih.gov/cdd?term="^^ . "https://ssbd.riken.jp/database/dataset/"^^ . . "repository" . . "expression" . "false"^^ . . "polypeptide region" . . . . . . . . . "A dataset in the ChemBioSys data platform"^^ . . "https://uts.nlm.nih.gov/uts/umls/concept/"^^ . . . . . "https://bioregistry.io/collection/$1"^^ . "sopropr" . . "croissant" . . . . . . "agriculture" . "WWF" . . . . . . "asfis" . "false"^^ . . "DAPHNE4NFDI Collection" . . "Human Cell Atlas Ontology" . . "Pathguide contains information about 325 biological related resources and molecular interaction related resources."^^ . . "^\\d{3}$"^^ . "dataplant" . . . . . "slm" . . "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors"^^ . "sweet.stsb" . "molecule" . . . "true"^^ . "https://w3id.org/kim/isced-1997/level$1"^^ . . "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"^^ . "https://amoebadb.org/amoeba/app/record/gene/$1"^^ . . . "false"^^ . "https://endlessforms.info/graphics/"^^ . "ribonucleic acid" . . . . . "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org" . "true"^^ . . . "representation mathematics solution" . "chemical structure" . "5ede4273-b26c-4ea4-adb7-3ce294ab3397"^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Function Orthogonal"^^ . . "FloraBase ID" . "LDCM0160"^^ . . "SBGN Bricks data and ontology" . "^\\d{4,}$"^^ . . . . "chiro" . . "http://ictv.global/id/MSL40/"^^ . . . . . . . "Tianyi Zhao" . . . . . "earth sciences" . "ecso" . "http://www.geneontology.org/formats/oboInOwl#"^^ . . . "http://sweetontology.net/realmOcean/"^^ . "knowledge representation" . "19"^^ . . . "http://hdl.handle.net/11459/$1"^^ . "true"^^ . "medicine" . "https://www.ncbi.nlm.nih.gov/books/$1"^^ . . "health/disease" . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Orogen"^^ . . "false"^^ . . . . . . . . "^\\d+$"^^ . . . . "http://iirds.tekom.de/iirds/domain/software#$1"^^ . . "https://browser.planteome.org/amigo/term/PECO:$1"^^ . . . . . . . "http://purl.obolibrary.org/obo/VBO_"^^ . . . . . "https://www.authenticus.pt/"^^ . . . . . . . "false"^^ . . "VS-0724-CJ1"^^ . . . . "true"^^ . "101"^^ . "Mathematical modeling ontology" . . . "https://www.ebi.ac.uk/interpro/entry/InterPro/"^^ . "https://www.fao.org/fishery/en/species/$1"^^ . "RAP-DB Locus" . . . "phenotype" . "zhufeng@zju.edu.cn" . . . . . "bibliography/documents" . "Audience Types Controlled Vocabulary" . . . "application/cdmi-queue"^^ . . . "Odor Molecules DataBase" . "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2" . . "Plant Anatomy Ontology" . "^ACYPI\\d{6}(-RA)?$"^^ . . . . "environmental science" . . . . . "^\\d+$"^^ . "Raras Brazilian Rare Disease Knowledge Graph" . . . . "support" . . . . . . "si.decisions" . "nepomuk.nao" . . "^\\d+$"^^ . . . "^DB-\\d{4}$"^^ . . . "Ruben Abagyan" . "developmental biology" . "isTextual"^^ . . . _:N898b8778ff7340cf8d86bf35192eaeab . . . . "false"^^ . . . . "preclinical studies" . _:N6881bf0f91564bd9957b648e055cb4d2 . "SWEET Ontology Realm Cryosphere" . . . . . . "http://purl.obolibrary.org/obo/NOMEN_$1"^^ . . "repository" . "Xenbase" . "genome" . . . . . . "https://www.pombase.org/gene/"^^ . . . . . "http://www.treefam.org/family/"^^ . . "http://www.w3.org/ns/adms#"^^ . . "http://www.cellresource.cn/cellsearch.aspx?sc=1&where="^^ . . . . . "http://www.w3.org/2003/06/sw-vocab-status/ns#"^^ . "https://www.mycobank.org/page/Name%20details%20page/$1"^^ . "time" . . "perkinelmer" . . "NIF Standard Ontology: Chemical" . . . . . . "obo" . . . . . "kenan@ucsd.edu" . "Span" . "https://bioregistry.io/pseudogene:$1"^^ . "http://purl.obolibrary.org/obo/MmusDv_"^^ . . . . . . "http://en.wikipedia.org/wiki/"^^ . "nfdi4ing" . . "https://www.ebi.ac.uk/miriam/main/$1"^^ . . . . . . "biology" . . "phenotype" . "8639.1"^^ . "Physiome Model Repository" . . "Forum on Information Standards in Heritage - Building Materials Thesaurus" . . . "Ontology for Nutritional Epidemiology" . "Open Energy Ontology" . . . . . "http://sweetontology.net/realmGeolConstituent/"^^ . . . "tib.cgo" . . "false"^^ . "ontology" . "Benjamin.Zapilko@gesis.org" . "disease" . . . "http://purl.obolibrary.org/obo/ZP_"^^ . "http://eurovoc.europa.eu/$1"^^ . . . "19210-3"^^ . "UniProt Cross-ref database" . . . "The new national clinical trials registry of the Netherlands"^^ . . . "Linear double stranded DNA sequences" . . . . . . . "https://github.com/obophenotype/uberon/issues/$1"^^ . . "https://database.factgrid.de/entity/$1"^^ . . . . . . "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium."^^ . "artificial intelligence" . . . . . "LRMI Alignment Type Vocabulary" . . . . "Central concepts of REX research" . . "4390079"^^ . . "identifier for an author in IEEE Xplore"^^ . "gene group" . . . . . . _:N099a1c32f93f4481a2e5d84d9be8997e "paolo.ciccarese@gmail.com" . . . . . . "https://mobidb.org/"^^ . . "http://www.kegg.jp/entry/$1"^^ . . . "phenomics" . . . . "structure" . . . . . . . . "The Pathogen Transmission Ontology describes the transmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles."^^ . "nucleotide" . "nfdixcs" . . . . . "ontology" . . . . "genome/gene" . . . . "SWEET Ontology Material Instrument" . "sgd" . . . . . . . . . "organism-specific databases" . . . "http://sweetontology.net/phenFluidTransport/"^^ . "https://www.rhea-db.org/rhea/"^^ . . . . . . . "https://schema.org/"^^ . . . . "UniProt Chain" . . . "nmr" . . . . "identifier for the defunct/merged Publons website; URL redirects to Web of Science's P8372 (WOSID)"^^ . "Robert J. West" . . "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it."^^ . "Isabel Sá-Correia" . "false"^^ . . . . . . . "SWEET Ontology Representation Mathematics Graph" . . . . . "http://www.antweb.org/specimen.do?name="^^ . . "ontology" . . "Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation."^^ . "idoden" . . . . . . . . . . "false"^^ . . . "https://bartoc.org/en/node/$1" . "holofood.animal" . . "ChemIDplus" . . . . . "https://bioregistry.io/elm:"^^ . . . . . . "false"^^ . "mathalgodb" . . "anatomy" . . . . . . . "MGgn0008978"^^ . . . . "https://www.inaturalist.org/taxa/"^^ . "STRENDA stands for “Standards for Reporting Enzymology Data”. For researchers it is essential to be able to compare, evaluate, interpret and reproduce experimental research results published in the literature and databases. Thus, for enzyme research, the STRENDA Commission has established standards for data reporting with the aim to improve the quality of data published in the scientific literature. [from homepage]"^^ . . . "The Hydra Core Vocabulary" . "VAs-09.01"^^ . "protein" . "classification" . . . _:Ncef36e84801e493baed851e34bf6c256 "The World Health Organization" . "sweet.hua" . . . "Serhii Nazarovets" . . "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . . . "https://smc.jgi.doe.gov/sources/$1"^^ . . . . . "true"^^ . . . . . . . "spar" . . "http://purl.obolibrary.org/obo/PO_$1"^^ . . "assay" . "false"^^ . "false"^^ . . . . . . . . . . "Food-Biomarker Ontology" . . "Victoria K. Jenkins" . "histological assay" . "genomics" . "data sharing" . "lindsey.anderson@pnnl.gov" . . "false"^^ . . "https://bioregistry.io/ukprn:"^^ . "life science" . . "epidemiology" . . "yeastract" . . . . "false"^^ . . . . . "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database."^^ . . . "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite."^^ . . . . "World Wildlife Fund Ecoregion" . "^\\d+$"^^ . "https://www.sharkipedia.org/species/"^^ . "^TCTR\\d+$"^^ . "sider.drug" . . . "nfdi4ing" . "A domain ontology on food and bioproduct processing and characterization that is a specialization of the PO2 ontology (Process and Observation Ontology)."^^ . . . . _:N0b2d7556b13c40b1b6830d62374d1d56 "Jonathan Bard" . . "0000404"^^ . "Python"^^ . . . "ddi.typeoftelephone" . "unipathway.compound" . "protein" . . . . "false"^^ . "SWEET Ontology Realm Hydrosphere Body" . . "Bandwidth"^^ . "ontology" . "http://rs.tdwg.org/dwcem/$1"^^ . "antibody" . . "rex" . "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information."^^ . . . . . . . . . "interaction" . . . . . . "nucleotide" . . . "Thing Description Ontology" . "life science" . . "kegg_genome" . . "The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)"^^ . . . . . . . . . "co_343" . "ncbitaxon" . . "http://www.genome.jp/dbget-bin/www_bget?cpd:$1"^^ . . . "nlx.res" . . "2.16.840"^^ . "false"^^ . "false"^^ . . "genome/gene" . "MTBLS1"^^ . "obo" . . . "fish.event" . . . "structure" . . . . . . . . . "Shuichi Onami" . . "gard" . "genomics" . "address on the Mastodon decentralized social network (the form is 'user@server.domain' without a leading '@')"^^ . . . "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins."^^ . "Address"^^ . "The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing."^^ . . . . . "medicine" . . "atmosphere pressure" . . "ribocenter" . . . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$"^^ . . . "^\\d{7}$"^^ . "http://w3id.org/owlstar/"^^ . "Simon Jupp" . . "true"^^ . "https://civicdb.org/links/assertions/$1"^^ . _:Ne9ffc7efe37b4304877d88e12ddd3747 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "sequence" . "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1"^^ . . "A database-specific registry supporting curation in the Gene Ontology" . . "https://www.ebi.ac.uk/intact/interaction/"^^ . . _:N23441d1f87004befb9b54073034f72f3 . "SupraBank Molecule" . "protein"^^ . . . . "pharmacodb.tissue" . "Identifier of an object from the ASTD database."^^ . . "preprints" . "ChemPro Probe" . . . "engineering" . "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download."^^ . . . . . . . . "^A(N|O)\\d+-\\d+$"^^ . . . "true"^^ . . . "Primate Brain Atlas" . . . "license" . "https://dcmi.github.io/openwemi/ns#$1"^^ . "EPOS-DCAT-AP" . . . "nfdi4chem" . . . . . . "research" . . . . . . . . "biomedical science" . . . . "metadata" . . "Roger Linington" . . "https://w3id.org/idsa/core/$1"^^ . "Actinoid"^^ . . "Jesper Friis" . "The European Genome-phenome Archive (EGA) is a global network for permanent archiving and sharing of personally identifiable genetic, phenotypic, and clinical data generated for the purposes of biomedical research projects or in the context of research-focused healthcare systems. Jointly managed by the European Bioinformatics Institute (EMBL-EBI) in Cambridge (UK) and the Centre for Genomic Regulation (CRG) in Barcelona."^^ . . "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id="^^ . . . . "Scopus affiliation ID" . "Graphic Descriptor Ontology" . . . . . "https://w3id.org/digitalconstruction/0.5/Lifecycle#$1"^^ . "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field."^^ . . "0002927"^^ . . "structure" . . "pfbaldi@uci.edu" . . "gfbio.ets" . . "medicine" . "dna" . "false"^^ . . "repository" . "Teresa K. Attwood" . "http://purl.org/dcx/lrmi-vocabs/learningResourceType/"^^ . "organism-specific databases" . "imex" . . "false"^^ . . . "saref" . "Layla Michán Aguirre" . . . . . . . "yuki.yamagata@riken.jp" . "64ba"^^ . "false"^^ . . "Research Resource Identification" . . "andreadega/systems-biology-compiler"^^ . "https://units-of-measurement.org/$1"^^ . . "^B\\d+$"^^ . "sophwn" . "biomedical science" . "sedml.format" . . . . "https://w3id.org/linkml/$1"^^ . . "false"^^ . . . . "Arc"^^ . "U001388"^^ . . . . . . . . . "Oliver Fiehn" . . . "Patent" . "life science" . . "smtifahim@gmail.com" . "^\\d{7}$"^^ . "Tissues used to annotate cells and cell lines, cross-referenced to EFO, BTO, UBERON, and CALOHA"^^ . . . "NFDIxCS Collection" . "engineering" . "Olaf Simons" . "AirConditioningUnit"^^ . . . "pathway" . . . . "^PRO_[0-9]{10}$"^^ . . . . "65"^^ . . "ontology" . . . "http://purl.org/spar/deo/"^^ . . "mice" . "http://purl.obolibrary.org/obo/STATO_$1"^^ . . "Human Proteome Map Protein" . "false"^^ . . "Swiss Personalized Health Network Schema" . "protein" . . . . "SNOMEDCTCT_2018_03_01" . "ontology" . "http://vocabularies.wikipathways.org/gpml#$1"^^ . . . . "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites."^^ . . . . "false"^^ . . . "^\\d+$"^^ . . "V.Hualla@cgiar.org" . . . . . "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC."^^ . . . . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid="^^ . "03733596-c643-4c14-a7bc-3048591a3f2d"^^ . "https://morpheus.gitlab.io/models/$1"^^ . . "Richard John Roberts" . . . . "Collection of European paediatric cardiac coding files"^^ . . . . . "http://purl.org/heritagedata/schemes/eh_tbm/concepts/"^^ . . "Database of Macromolecular Movements" . . "0001017"^^ . . "SWEET Ontology Representation Data Model" . "https://w3id.org/BCI-ontology#"^^ . "biology" . . "http://purl.org/dc/dcmitype/$1"^^ . "false"^^ . "https://www.geonames.org/"^^ . "^\\d{8}$"^^ . "fish" . "fid baudigital" . . . . "00001"^^ . _:N31519f825a934a6f9c3efdc7d8dab9b5 . . "TAIR Protein" . "false"^^ . "dna" . "material science" . "whole plant development stage" . "https://github.com/information-artifact-ontology/IAO/issues/$1"^^ . "biomedical science" . "life science" . "https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"^^ . . . . "BinaryState"^^ . . . . . "methods" . "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis."^^ . . "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"^^ . "https://www.rebuildingakidney.org/id/"^^ . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Sugar Kelp Trait Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "organ" . . . . . "Andrea Jacobs" . "bioresource" . . "MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for cell lines used in assays measuring molecular bioactivity, linking them to associated compounds and proteins."^^ . "false"^^ . "Retail Energy Market of Great Britain" . . "COG_Cluster" . "organism" . . . . "metabolite" . . "^\\d+$"^^ . . "https://www.ebi.ac.uk/gxa/genes/"^^ . "SIGNOR" . "false"^^ . "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used."^^ . "^\\d+$"^^ . . "ActiviateOrArchiveContract"^^ . . "OMIA" . "mampol" . . . "https://saref.etsi.org/saref4envi/"^^ . "physics" . "14"^^ . . . . . . "s4agri" . "evan@epatters.org" . . "derivatives%2Fthiocyclam%20hydrochloride"^^ . . . . "Data types in REX research" . . . "life science" . . . . . "structure" . . "Nucleic Acids Phylogenetic Profiling" . "http://www.chemspider.com/Chemical-Structure.$1.html"^^ . "^\\w+$"^^ . . . . "Morphological and physiological measurement records generated from clinical and model organism research and health programs."^^ . . . "000059"^^ . . . . . "catalogs" . . . . "^\\d+$"^^ . "Terminology of Anatomy of Human Embryology" . . . "protein" . . . . . . . "false"^^ . "CSV on the Web Vocabulary" . . "An identifier for an organization"^^ . "https://foodb.ca/foods/"^^ . . "inxight-drugs" . "Mike Tyers" . "https://genelab-data.ndc.nasa.gov/genelab/accession/$1"^^ . "https://www.chemicalbook.com/ChemicalProductProperty_IN_$1.htm"^^ . "PMID" . . . . . "datacite.resource" . "https://www.worldcat.org/isbn/"^^ . "http://purl.obolibrary.org/obo/XAO_"^^ . "pathway" . . "53504"^^ . . . . "mim.ps" . "dunand@lrsv.ups-tlse.fr" . "educational science" . . "UniChem compound" . . . . "^[A-Za-z]+$"^^ . _:N0e2c5ce3383d4675ac3f60b4df7dc0f7 "vocabularies@unesco.org" . "false"^^ . "image/movie" . "https://bioregistry.io/cst.antibody:"^^ . . "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures."^^ . . "omics" . "105"^^ . "metadata" . . "CAPS-DB" . "publisher" . . . "biobank" . . "false"^^ . . "vaccine" . . "true"^^ . "sopropmf" . . . "http://sweetontology.net/reprSciMethodology/"^^ . "mutant" . . . . "dmba" . . . "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."^^ . "bdgp.est" . . . "http://www.proteinmodelportal.org/query/uniprot/"^^ . "http://foodb.ca/compounds/$1"^^ . "false"^^ . . "true"^^ . . . "UM-BBD_pathwayID" . "bto" . "ddinter.drug" . "sickle cell disease" . . . . "false"^^ . . . . "molecular glue" . . "http://sweetontology.net/phenSystemComplexity/"^^ . "false"^^ . . . . . . . "PSSKB allows researchers to model post translational modifications and amino acid substitutions in proteins, providing 3D structural representations. Identifiers represent protein motifs on which PSSKB provides data."^^ . . "doid" . "sorepdf" . . . . . . . "registry" . "SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes."^^ . . . . "movie" . "phenotype" . . . . "http://purl.uniprot.org/annotation/VAR_"^^ . . . "engineering" . . "^PR\\d{5}$"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Standards"^^ . . . "life science" . "civic.eid" . . "CONSO00010"^^ . . . . "0000008"^^ . "https://rism.online/$1"^^ . . . "monosaccharides" . "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"^^ . "00000000"^^ . . "^[a-z][a-z]/[0-9]+$"^^ . "cell" . . . . . . . "PolBase" . "http://purl.obolibrary.org/obo/WBls_$1"^^ . "British Oceanographic Data Centre data storage units" . "http://sweetontology.net/phenGeolTectonic/$1"^^ . . . . . . "civic.mpid" . . . . "BiGG Reaction" . "geology" . . "pathway" . . "^[A-Za-z-0-9_]+(\\@)?$"^^ . . . "true"^^ . "P0DP23"^^ . "https://cropontology.org/rdf/CO_343:$1"^^ . "Amos Bairoch" . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . "ontology" . "The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits."^^ . . . . . "Heat Pump Ontology" . . . . . "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID="^^ . _:N411f94b410df4bcc857421f20cd47953 . "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources."^^ . "pathway" . . . "false"^^ . "https://ssrn.com/abstract="^^ . . "genome/gene" . . "ecao" . "dna" . . "autdb" . "Plant Gall Ontology" . . . . "sh" . . . . . . . . . . . "enzyme commission number" . "gmelin" . . "Experimental Measurements Purposes and Treatments ontologY" . . . . "protein interactions" . "ga4ghdos" . . "An experimental run, served thrugh the ENA"^^ . . . . . "0002350"^^ . . . . "ontology" . "biomedical science" . . . . "obo" . . . . . . "education level" . . . "genome/gene" . "https://modeldb.science/modellist/"^^ . . "Social Behavior in insects"^^ . . "false"^^ . "ADXL345_Pi_1_AccSensor_1_Result_2019-02-26_14_53_54.97"^^ . . "Actor"^^ . "6b1"^^ . . "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI)"^^ . "https://services.scicrunch.io/sparc/drs/v1/package/$1"^^ . "vmh.reaction" . . _:N2868cc9f10984e2c8e290ce59a3c4198 "Kim Petersen" . . . . . "DrugBank" . "0000389"^^ . . . . . . "anatomy" . . . . . . "Describes typical Computational Chemistry experiments, including Molecular Publications, Molecular Systems, Molecular Calculations"^^ . . "paralogous" . . . . . "NCBI Taxonomy" . . "measurement" . . "A assay in the ChemBioSys data platform"^^ . . "euroscivoc.schema" . . "BiGG Compartment" . . . . . . . . . . . . "https://www.ebi.ac.uk/intact/interaction/$1"^^ . . . "YAL001C"^^ . "tib.ofm" . "TriTrypDB" . "cause of death" . "Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary" . "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . . "omics" . . . . "https://tree.opentreeoflife.org/taxonomy/browse?id=$1"^^ . . . . . . . "https://hl7.org/fhir/us/"^^ . "mardi" . "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species="^^ . . . "BioLegend is a life sciences supply vendor."^^ . "PANTHER Family" . . . "https://www.cancerrxgene.org/translation/Drug/"^^ . . "https://radlex.org/RID/"^^ . "SAREF4LIFT: an extension of SAREF for the Smart Lifts domain" . . . "Simplified molecular-input line-entry system" . "http://purl.obolibrary.org/obo/TADS_$1"^^ . "ontology" . . . . "https://trialsearch.who.int/Trial2.aspx?TrialID="^^ . . . . _:Nc344dc051f484cd3805f88ebe2dd748c . . . . "trait" . . . "^\\d+$"^^ . . . . "fid baudigital" . "false"^^ . "alan.bridge@sib.swiss" . "domain" . . . . . "^st\\d+$"^^ . . . . "SAREF extension for environment" . "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way."^^ . "http://sweetontology.net/reprSpace/"^^ . "https://w3id.org/emmo/domain/battery#battery_"^^ . "^rs[0-9]+$"^^ . "ddi.aggregationmethod" . . "mwo" . . . . . "sheriff@ebi.ac.uk" . "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1"^^ . . . . . . . . . "dcam" . "digital planning and construction" . . "^\\d+$"^^ . . . . . "wikidata" . . . . . "false"^^ . . . . . . "CHEBI" . "https://cameochemicals.noaa.gov/chemical/"^^ . "unit" . . . "The Heat Pump Ontology (HPOnt) aims to formalize and represent all the relevant information of Heat Pumps. The HPOnt has been developed as part of the REACT project which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 824395."^^ . "http://edamontology.org/data_$1"^^ . . . "^\\d+$"^^ . "false"^^ . "LSM-6306"^^ . "false"^^ . "Type"^^ . "schema" . . . "Counterclockwise"^^ . "Prefixes relevant for the [Data Literacy Alliance (DALIA)](https://dalia.education/en) project" . . "http://data.loterre.fr/ark:/67375/N9J$1"^^ . . "http://www.phosphosite.org/siteAction.do?id="^^ . "dwelter.ontologist@gmail.com" . "Type of Note" . "false"^^ . . . . . . "http://sweetontology.net/realmOceanFeature/$1"^^ . . . "false"^^ . . "leadscope" . "false"^^ . "smid" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Day"^^ . . . . "pathway" . "gene" . "false"^^ . "gfbio.top" . _:N54234c743b464ca3b0b4ed8f24c7a9c1 . . . "SED-ML data format" . . . "false"^^ . "nfdi4culture" . . . . . . . . . . . "1a05"^^ . "gold" . . . "Gene"^^ . "method" . . . . "disorder" . . "Simplified Upper Level Ontology" . . "false"^^ . . . . . . . . . "ontology" . "anatomy" . "NIAEST" . "Alexey M. Eroshkin" . "classification" . "RubyGems" . . "Indicates if the actor is an individual, a group of individuals, a family or an organization, such as a legal body, a corporation, or a firm."^^ . . . . . . "https://www.uniprot.org/keywords/"^^ . "ado" . "Scholia Registry" . . . . "https://www.disprot.org/idpo/IDPO:"^^ . . . _:N641537beab594d41b95f8e06003a6f80 . "Georgeta Bordea" . . . . . "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . "http://purl.obolibrary.org/obo/OHD_"^^ . . "dbgap" . . "^[A-Z0-9]+$"^^ . "life cycle stage" . . . "WikiPathways Ontology" . "https://prefix.zazuko.com/prefix/$1:"^^ . . "false"^^ . "^\\d{7}$"^^ . . "Zazuko Prefix Server" . "proteomic databases" . . "repec" . . . . . "false"^^ . . . . . . . . "https://pharmacodb.ca/tissues/$1"^^ . . . . . "Digital Competence Framework" . "3d structure" . . "http://sweetontology.net/propDifference/"^^ . . . "https://www.e-cyanobacterium.org/bcs/entity/$1"^^ . . . . . . . . . . . . "^\\d{7}$"^^ . . . . . . "false"^^ . "nmrXiv compound" . . . "^T\\d{3}$"^^ . "Alayne Cuzick" . "1257009"^^ . . . . . . . "sumirp77@gmail.com" . "sbml" . "false"^^ . . . . . . "6T"^^ . "http://w3id.org/nfdi4ing/pro-research#$1"^^ . . . "https://nmrxiv.org/sample/$1"^^ . . "http://purl.obolibrary.org/obo/PLO_"^^ . "DarcyFlux"^^ . . . . "http://sweetontology.net/realmLandform/$1"^^ . . . "sweet.stf" . . . . . "NeuroLex Anatomy" . "Character Set" . . "classification" . "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1"^^ . "false"^^ . . . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information."^^ . . . . "clo" . "flybase" . . . "^\\d+$"^^ . "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . "PXD000440"^^ . . . . . "https://w3id.org/kim/isced-1997/level"^^ . . . . "false"^^ . . "false"^^ . . . . . "soil science" . "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety."^^ . "Index Fungorum" . "http://bimerr.iot.linkeddata.es/def/material-properties#"^^ . "false"^^ . . "http://purl.obolibrary.org/obo/COVIDO_"^^ . . "https://search.dalia.education/items/$1"^^ . . "cohesin" . . . "true"^^ . . . . "taxonomy" . . "sweet.repsd" . . . "sweet.propq" . . . "creeas@gmail.com" . . "Fyler" . . "ontology" . "cmf" . . . . "The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations."^^ . "Predicates that are used to construct the GESIS Knowledge Graph, a bibliometrics KG."^^ . . . . "Paula.Duek@sib.swiss" . . "^\\d{7}$"^^ . . . . "ebisc" . "sopropef" . "mjyoder@illinois.edu" . "c786"^^ . . . "true"^^ . . "ontology" . "This mini-ontology contains classes and instances for each version of the licenses that are commonly used in software projects, particularly open source software projects. The URI's for each are the canonical URI's for that license (where they exist)."^^ . . "PDB Structure" . . . . "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy (EMAP ontology) and incorporates each Carnegie stage of development (CS1-20). This abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). This ontology was made computationally and later deemed \"incoherent\" by the authors because the stage-dependent hierarchical structures were not integrated."^^ . . "false"^^ . . . "CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains. Note that while still available and included in Unified Medical Language System (UMLS), it has not been updated since 2006."^^ . . . . . . . "https://absd.pasteur.cloud/antibody/$1"^^ . "Gene Ontology Reference" . . "false"^^ . . . . . "sweet.repmf" . "false"^^ . . . "burkesquires@gmail.com" . "^\\d+$"^^ . "obo" . . "Ontology"^^ . "false"^^ . "false"^^ . "https://omim.org/MIM:"^^ . . . . "sweet.propcat" . "https://www.pirbright.ac.uk/node/$1"^^ . . . "http://w3id.org/kim/schulfaecher/$1"^^ . "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry."^^ . . . . "http://dbpedia.org/property/$1"^^ . "neurodegeneration" . . . . . "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information."^^ . . "pathway" . . . "As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:\n- Research team and institution\n- The EMSL project DOI\n- Link to project data available in EMSLs Data Portal\n- Project type"^^ . "RSC3"^^ . . . "SWEET Ontology Property Space Thickness" . . . . . "^e\\d+$"^^ . . "Gramene Taxonomy" . . "^\\d{5}$"^^ . "01N50ZZ"^^ . . . . . . . "false"^^ . "ontology" . . . "false"^^ . "A controlled vocabulary to support the study of transcription in the developing mouse brain"^^ . "realm" . "genome/gene" . . . . . "https://www.ebi.ac.uk/chembl/cell_line_report_card/$1"^^ . . "SWEET Ontology Property Time" . "DataGeneratingActivity"^^ . . . "inaturalist.place" . "false"^^ . "DRUGBANK_ID" . "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database."^^ . . "Toxic Process Ontology" . . "small molecule" . . . . . . "hgnc.genefamily" . . . . "https://portal.hubmapconsortium.org/browse/dataset/$1"^^ . "https://www.datanator.info/gene/"^^ . "Kevin Drew" . . . "interaction/pathway" . . . . "http://sweetontology.net/phenSolid/$1"^^ . . "allotrope.equipment" . . . . "^\\d+$"^^ . . "^\\d{7}$"^^ . "false"^^ . . . "^\\d+$"^^ . . "AP00378"^^ . "https://www.uniprot.org/uniparc/$1"^^ . . "false"^^ . "Human Plasma Membrane Receptome Families" . . . "stewart.cole@epfl.ch" . . . . . . . . "Alzforum_mut" . . . "ontology" . . . . . . . "ess" . . . . "Echinobase supports the international research community by providing a centralized, integrated and easy to use web based resource to access the diverse and rich, functional genomics data of echinoderm species."^^ . . "gfbio.kingdom" . "interaction" . "bioresource" . "https://cordis.europa.eu/article/id/"^^ . . "earth sciences" . . "^\\d+$"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock Igneous"^^ . . "matthias.samwald@meduniwien.ac.at" . "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . . . "A cross-sectoral metadata profile for describing teaching and learning resources, primarily based on [schema.org](https://schema.org) and the Learning Resource Metadata Initiative LRMI, and additionally utilizing elements of the Simple Knowledge Organization System SKOS. A JSON-LD11-compliant data structure is defined in the form of this HTML specification, including a JSON schema against which data can be automatically checked for conformity with the profile."^^ . "http://www.fao.org/gsfaonline/additives/details.html?id="^^ . . . . . . . . . . "gov.object" . . . "Stress Knowledge Map" . . . . "http://uri.neuinfo.org/nif/nifstd/nlx_br_$1"^^ . . . "false"^^ . "gene" . . "false"^^ . . "gene expression" . "false"^^ . "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology."^^ . "ukprns" . "false"^^ . . "obo" . . . . "grouping" . . . . "S6"^^ . . . . . . . . . . . . . . . . . . "https://ximbio.com/reagent/$1"^^ . . . "semantic web" . "PT0582"^^ . . "https://nobias-project.eu/nobias/"^^ . "http://www.kegg.jp/entry/$1"^^ . . . . . . . . . . . "https://bioregistry.io/pocketome:"^^ . "http://purl.obolibrary.org/obo/chiro#$1"^^ . . . . . . "https://chemkg.github.io/chemrof/$1"^^ . . "expression data" . "^\\d+$"^^ . . "https://cropontology.org/rdf/CO_322:$1"^^ . . "DSMZCellDive" . "modeldb" . . . . . "embryo" . "GOLD metadata" . "miapa" . "Contributor Roles Taxonomy" . . . "protein" . . . . . "European Paediatric Cardiac Codes" . "ChemBioSys Tag" . "Pathogen Host Interaction Phenotype Ontology" . . "schema" . "traffic engineering" . . . . . "1"^^ . "stato" . "^(?:lipid/[A-Za-z0-9]+|simulations/\\d+|experiment/(?:OP|FF)/(?:unpublished/[A-Za-z0-9_-]+|10\\.\\d{4,9}/[A-Za-z0-9._/-]+)/\\d+)$"^^ . "https://bioregistry.io/lrg:"^^ . "tib.mat" . "European Genome-phenome Archive Study" . "eu89h" . "application_case"^^ . . . . . "https://fairsharing.org/organisations/$1"^^ . . "https://www.leadscope.com/structure_search_results.php?ss_string=$1"^^ . "Genome assembly database - INSDC accessions" . "ontology" . "false"^^ . "soreaofl" . . . "Established in 2005 by professor Wu Taixiang and Li Youping team, West China Hospital, Sichuan University, and the Ministry of Health of China assigned it to be the representative of China to join WHO ICTRP in 2007. The Chinese Clinical Trial Registry provides the services include register for trials, consultation for trial design, central randomization for an allocation sequence, peer review for draft articles and training for peer reviewers. (from website)"^^ . . "beginning_of_existence"^^ . . "http://www.w3.org/ns/earl#$1"^^ . "http://rdfs.org/sioc/argument#$1"^^ . . . . "Pieter Mestdagh" . "false"^^ . . "^(cd)?\\d{5}$"^^ . "nfdi4chem" . "to add"^^ . . . . "http://sweetontology.net/stateTimeGeologic/$1"^^ . . "A set of best practices and simple approach for a read-write Linked Data architecture, based on HTTP access to web resources that describe their state using the RDF data model."^^ . "http://www.w3.org/2007/05/powder#"^^ . "^\\d{7}$"^^ . . . . "px" . "https://oerschema.org/$1"^^ . . "Characteristic"^^ . "^\\d+$"^^ . "^\\w+$"^^ . "mco" . . "cultured cell" . . . . "pmc" . . "genome" . "InForce"^^ . "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_$1"^^ . _:N5d822cf90fab4624a62667b91665eb5b . "NeuroVault Collection" . . . . . "charprot" . . . "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes."^^ . "Pierre Baldi" . . "cidoc.crm" . . "NIFEXT" . . "https://data.gesis.org/gesiskg/schema/"^^ . "Complex Portal" . . "sorepsg3" . "http://purl.obolibrary.org/obo/TAHE_$1"^^ . "https://aopwiki.org/relationships/$1"^^ . . . "http://purl.obolibrary.org/obo/PR_"^^ . "This is the data analysis lifecycle module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . . . "Orphanet Rare Disease Ontology" . . . . . . . . "PhosphoPoint Phosphoprotein" . "Jennifer C. Giron" . . . . . . "false"^^ . . . "people" . . . "315.1"^^ . . "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1"^^ . "^S\\d+$"^^ . . . "http://purl.obolibrary.org/obo/ONE_$1"^^ . "MolBiC Compound" . "Ontology for PREMIS 3, the international standard for metadata to support the preservation of digital objects and ensure their long-term usability."^^ . . _:N0ddaba33b3cf419b81cacce4a1a77278 "Kirk Hess" . . . . . . "sweet.maoc" . . . . . "https://autoicdapi.com/reference/icd-11/$1"^^ . "ontology" . . . . "lipidomics" . . "false"^^ . . . . . . . "http://purl.obolibrary.org/obo/MOBIO_"^^ . "Union List of Artist Names" . "Food Type identifiers, supporting codes and vocabularies based on the EFSA FoodEx2 (https://www.efsa.europa.eu/en/data/data-standardisation) that are being tested in the development of the FSA's code and data standards repository. These codes may be used within FSA data."^^ . "orth" . . "false"^^ . . "false"^^ . "^\\d+$"^^ . . "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1"^^ . . . "earth sciences" . . "33"^^ . . . "Rat Strain Ontology" . . "CryptoDB" . . . "ChEMBL_ID" . . "https://ice.ntp.niehs.nih.gov/api/v1/search?chemid="^^ . . . . "http://purl.org/ao/"^^ . . . . . . . . . "Ontology of Precision Medicine and Investigation" . "CampoCerrado"^^ . . "botany" . . "igsr" . . "^\\d{7}$"^^ . . "inchi" . . "false"^^ . . "SWEET Ontology State Role Chemical" . . . "dialnet.article" . "interaction/pathway" . . "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."^^ . "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . . . "https://bioregistry.io/eu.rcn:"^^ . . "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available."^^ . . . "false"^^ . "mw.mgp" . . . . . . "project" . "ontology" . . . . . . . . . . . "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan="^^ . . . . . . . . "070886"^^ . . . . _:N206f89900cf947e9aabc643ab9fbef1d "jerome.bugeon@inrae.fr" . "AnVIL DRS" . "atmospheric" . . . . "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively."^^ . . . . "47"^^ . "chemical" . "genome" . "http://www.tcdb.org/search/result.php?tc=$1"^^ . . . . "http://purl.obolibrary.org/obo/PROCO_"^^ . . "time frequency" . . . "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names."^^ . . . "http://purl.org/spar/pwo/$1"^^ . . . . . . . . "The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s."^^ . "3305"^^ . . "An Apache-based persistent URL (PURL) service"^^ . "false"^^ . . . . "biopax" . . . "genetic polymorphism" . "false"^^ . . "MGnify Project" . "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world."^^ . . "medicinal chemistry" . . . . . . "Michael Feolo" . . "https://sparontologies.github.io/fabio/current/fabio.html#$1"^^ . . . "tads" . . "security" . "HMDB" . . . . . "false"^^ . . . "false"^^ . . . . . . "http://purl.org/pav/"^^ . . . . "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."^^ . "AblationZone"^^ . . . . . . "Alice Allen" . . "https://n2t.net" . "PST_100013"^^ . . "earth sciences" . . . . . "sorelch" . "life science" . . . "protein" . "IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR."^^ . "pii" . "4.2.78"^^ . . . "http://cerrado.linkeddata.es/ecology/ccon#$1"^^ . . . "Under this name space new properties and classes needed for the service lobid ('linking open bibliographic data') are defined . Already existing properties and classes which are (re)used in lobid aren't documented here [from TTL]"^^ . "digital planning and construction" . . "Taxonomic rank vocabulary" . . "bioportal" . "AP011135"^^ . . "IPI"^^ . "http://antibodyregistry.org/AB_"^^ . . . "false"^^ . "https://www.ebi.ac.uk/QuickGO/GProtein?ac="^^ . . . . "https://vocab.org/vann/#"^^ . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle Material"^^ . "The ROSETTA ontology of industrial robotics devices and robotic skills."^^ . "Kyoto Encyclopedia of Genes and Genomes" . . "lincs.protein" . . . . . . "This ontology describes concepts related to greenhouses. It mainly describes Dutch greenhouses, but can also be applied to greenhouses outside of The Netherlands. The ontology describes multiple aspects of the domain of greenhouses."^^ . "A vocabulary in LOV gathers definitions of a set of classes and properties (together simply called terms of the vocabulary), useful to describe specific types of things, or things in a given domain or industry, or things at large but for a specific usage. Terms of vocabularies also provide the links in linked data, in the above case between a Person and a City. The definitions of terms provided by the vocabularies bring clear semantics to descriptions and links, thanks to the formal language they use (some dialect of RDF such as RDFS or OWL). In short, vocabularies provide the semantic glue enabling Data to become meaningful Data. [from https://lov.linkeddata.es/dataset/lov/about]" . "protein" . "Philippe Rocca-Serra" . . . . "ontology" . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/"^^ . . . "chembiosys.assay" . "hybrid" . "559"^^ . "Probability Distribution Ontology" . . . . "geography" . "biomedical science" . . . . "https://glycopost.glycosmos.org/entry/$1"^^ . . . . "http://purl.obolibrary.org/obo/T4FS_"^^ . "obib" . . . . "DataCite Description Type" . "taxonomic classification" . . "Trish Whetzel" . . . "ontology" . . "true"^^ . . . . . . "false"^^ . . "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" . . . . "http://purl.obolibrary.org/obo/OBIB_"^^ . "false"^^ . . . . "https://w3id.org/digitalconstruction/0.5/Energy#$1"^^ . . "EntityRole"^^ . "Pavel Hobza" . . . . "sorepmst" . "Vevent"^^ . . . . . "EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology."^^ . . . "false"^^ . . . "tissue" . "Stephen Randal Voss" . "^[a-zA-Z0-9\\-:#/\\.]+$"^^ . "http://www.w3.org/ns/oa#"^^ . "A vocabulary about species to support the environmental research community in Arizona and New Mexico"^^ . . . . . . . . "N21"^^ . "false"^^ . . . . . . . . . "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem."^^ . "Cell line collections (Providers)"^^ . "ontology" . "taxonomy" . . . . . "false"^^ . . . "http://purl.obolibrary.org/obo/REO_$11"^^ . "http://vocabularies.wikipathways.org/wpTypes#"^^ . . "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:"^^ . . . "life science" . . . . . . "NITE Biological Research Center Catalogue" . . . "human" . "70"^^ . . . "false"^^ . . . . "http://emmo.info/emmo#EMMO_"^^ . "geologic" . "classification" . . . . "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . "protein" . . . "chemical structure" . "https://bioregistry.io/odam:"^^ . . . "protein" . "^\\w+\\_\\w+$"^^ . . . "A collection of ontologies, controlled vocabularies, and schemas relevant for the DataPLANT Consortium seeded from corresponding the [TIB OLS collection](https://service.tib.eu/terminology/collections/dataplant). See also a [recent review](https://doi.org/10.3389/fpls.2023.1279694) on ontologies for plant research data." . . "ontology" . "80001"^^ . . . . "http://sweetontology.net/relaHuman/"^^ . . . "cdna/est" . "^[SCTAGMNU]\\d+$"^^ . "2196"^^ . "Duration"^^ . "http://repository.topdownproteomics.org/proteoforms/"^^ . . . _:Nf043fceb57444f1ab4a4da3b8a4eb51b "Bert Van Nuffelen" . "SSF57615"^^ . . . . . "^\\d+$"^^ . "genome" . . . . "Ryuichiro Nakato" . "patient care" . . . . "^\\d+$"^^ . "proccaserra@gmail.com" . . . . . . "Gene Ontology Causal Activity Model" . . . "false"^^ . . "false"^^ . . . . "nfdi4chem" . . "false"^^ . . "representation data model" . "https://biokb.lcsb.uni.lu/fact/"^^ . "medicine" . "false"^^ . . . . . . . "sophgv" . . . . "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions."^^ . . . . . . . "Animal Trait Ontology for Livestock" . . . . . "false"^^ . . . "https://mibig.secondarymetabolites.org/go/"^^ . . . . . . . . "^GCA_[0-9]{9}(\\.[0-9]+)?$"^^ . . . . "https://archive.softwareheritage.org/browse/swh:$1"^^ . . . . . "^\\d+$"^^ . . . "^\\d{7}$"^^ . . "Research Resource Identifiers" . . "pesticides" . . . . . . . . . . "https://viralzone.expasy.org/$1"^^ . "Oryzabase Reference" . . . . . . . "regulation" . . . "ontology" . . . . "https://lincs.hms.harvard.edu/db/datasets/"^^ . "planetary climate" . _:N34e07ea3ccc94ed38578f4524b8eda70 . "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life."^^ . . . "hrehm@mgh.harvard.edu" . "Identifier of an author or reviewer in the Semion database (now defunct)"^^ . . . . . . . . . . "natural science" . . . . "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1"^^ . "false"^^ . "obo" . . "^[a-z][a-z0-9_]+[a-z0-9]$"^^ . . . . "Language Proficiency" . "T039"^^ . . . "http://sabiork.h-its.org/newSearch?q="^^ . . . . . "http://sweetontology.net/phenElecMag/"^^ . "^\\d{7}$"^^ . . . "16793"^^ . . . . "Overview of Medical Research in the Netherlands" . . . "zobodat.person" . . "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1"^^ . . . "00620027"^^ . . "wiktionary" . . . "Publishing Workflow Ontology" . . . . . "false"^^ . "sost" . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families."^^ . . . "French National Center for Scientific Research - Research Group Identifier" . "realm" . . . . . . "electrical engineering" . . . "false"^^ . . "joshua.adam.klein@gmail.com" . . "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val="^^ . "hyou@sjtu.edu.cn" . . "0000199"^^ . . "Biological Taxonomy Vocabulary 0.2 (Botany)" . . "https://search.clinicalgenome.org/CCID:"^^ . . . . . "ontologies" . "^\\d+$"^^ . "soreps" . . "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis."^^ . . . "Metabolic Atlas" . . . . . . "Classification of materials used in KENOM portal."^^ . "educational resources" . "drug discovery" . . "false"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Elemental Molecule"^^ . "http://www.w3.org/ns/odrl/2/$1"^^ . . . . . . "https://bioregistry.io/zazuko:"^^ . . "craniofacial phenotype" . . . "nfdi4ing" . "nb2018006591"^^ . . . . . "GCST000035"^^ . "Registry of Toxic Effects of Chemical Substances" . . "Hepatitis C Virus Database Project" . . "0000009"^^ . . "uniprot.journal" . . . . . "^\\d+$"^^ . . . . . . . . . . . "protein" . "Q47475003"^^ . . "^[a-f0-9]{32}$"^^ . "genecards" . . . "digital planning and construction" . "botany" . . "hathitrust" . . . "chemical compound" . . . . . "NFDI4BIOIMAGE Collection" . . . . . "false"^^ . . . . "AAA35559"^^ . "http://www.w3id.org/ecsel-dr-SO#$1"^^ . . . "0000080"^^ . . . . "https://fairsharing.org/$1" . "false"^^ . "sweet.manr" . "life sciences, biology" . "metabolomics" . . "allergen" . . . "obo" . "0000000"^^ . "sopropsh" . . "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1"^^ . . "disease" . "image/movie" . "sorepsp" . . "Wikidata Property" . . . "http://vocabulary.odm2.org/methodtype/"^^ . . "https://mycobrowser.epfl.ch/genes/$1"^^ . . . "Vincent Robert" . . "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon."^^ . . "peptideatlas.dataset" . "reaction" . "richard@cyganiak.de" . . "jp@senescence.info" . "protein" . "http://purl.obolibrary.org/obo/KISAO_$1"^^ . "https://www.phosphosite.org/curatedInfoAction.action?record="^^ . . . "environment" . . . "phylogenetics" . "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)"^^ . "false"^^ . "ontology" . "The Materials Design Ontology is designed to enable semantic query and integrated query over multiple databases. By generating mappings between MDO and the schemas of materials databases, we can create MDO-enabled query interfaces. The querying can occur, for instance, via MDO-based query expansion, MDO-based mediation or through MDO-enabled data warehouses."^^ . "https://github.com/w3c/vsso-core#$1"^^ . "bcrj" . "A thesaurus of terms useful for digital archaeology"^^ . . . . . "The Thing Model (TM) ontology is an RDF axiomatization of the TM concepts, one of the building blocks of the Web of Things (WoT). Besides providing an alternative to the standard JSON representation format for TM documents, the TM ontology can also be used to process contextual information on Things and for alignments with other WoT-related ontologies. [from homepage]"^^ . "bakerc@unb.ca" . "github" . . . "ontology" . "http://sweetontology.net/realmEarthReference/"^^ . "tol" . . . "ontology" . . . "MFCD00011659"^^ . . "http://www.fairsharing.org/ontology/subject/SRAO_$1"^^ . . . "ToxoDB" . . "Selventa legacy complex namespace used with the Biological Expression Language"^^ . "https://bioregistry.io/vipr:"^^ . . . . . "go.gpi" . . "ontology" . . "false"^^ . "WiCell Research Institute Cell Collection" . "http://dramp.cpu-bioinfor.org/browse/All_Information.php?id=$1"^^ . . . . "Leszek@missouri.edu" . . . . . "HorizontalCoordinateSystem"^^ . . . . "engineering" . . . . . . . "Identifiers correspond to literature references for molecular glue studies in the MGTbind database."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Physical"^^ . . . . . . . . . "dermo" . . . . . . . . . . "http://www.obofoundry.org/" . . . "false"^^ . "^\\d+$"^^ . . . . . . "marie-paule.lefranc@umontpellier.fr" . . "^SCV\\d+(\\.\\d+)?$"^^ . "false"^^ . . "false"^^ . . . . . . _:N105f9f07da91431d829cae0054c8e337 "IIS Helpdesk" . . . "https://envipath.org/package/"^^ . . "http://thesauri.dainst.org/en/concepts/"^^ . . "false"^^ . . . . "evidence" . . . . . . . . . "expression" . . "https://biodolphin.chemistry.gatech.edu/detail/$1"^^ . "semantic web" . . . "gene" . . . "reaction data" . "NOAA Fisheries Species Directory" . . . "health science" . "Publons Researcher" . "SWEET Ontology Property Energy Flux" . . . "life science" . "phenotype" . . . "chemrof" . . . . . "LexicalMatching"^^ . "http://www.ontologies.com/Ontology3197.owl#"^^ . . . . "9-1-1 Complex"^^ . . "data classification" . . . "https://deims.org/sensors/$1"^^ . "Deepak Unni" . . "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases."^^ . . "false"^^ . "KEGG_DRUG_GROUP" . . "Pathway ontology" . "expression" . "oridb.schizo" . . "dna" . "http://thebiogrid.org/$1"^^ . . . . . "https://hub.docker.com/r/"^^ . "jgoll@emmes.com" . . . . "phenotypes" . . "Big Open Network of Sustainability Assessment Information Ontology" . . "ChecklistBank" . . . "fish" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time"^^ . . "sweet.hutr" . . "deims.taxonomy" . . "dna" . "https://chemprosquare.idrblab.net/data/probe/details/"^^ . . "disease" . "Alen Vodopijevec" . . "https://cropontology.org/rdf/CO_322:"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Function"^^ . . . . _:Nb9eb8844d07c489a8ef86cee3f84a57d "American Medical Association" . . . . "chemistry" . "3d structure" . "botany" . "false"^^ . "http://sweetontology.net/phenEcology/"^^ . . "life science" . . . "false"^^ . . "http://purl.org/dcx/lrmi-vocabs/interactivityType/"^^ . "^U\\d+$"^^ . "tctr" . . . "material science" . "oarcs" . "ontology" . "Harald Sack" . "HL7 V3 Code System" . . "qtldb" . . . "^[a-zA-Z0-9]+(-[a-zA-Z0-9]+)+$"^^ . . . . "false"^^ . "sophsy" . "^\\w+(\\_)?\\d+(\\.\\d+)?$"^^ . . . _:Nbde193958ac24fc093b59b7ce040d562 "Kate Rose" . . . . . "smp-m3w9hbe"^^ . "http://w3id.org/nkos/"^^ . "genome annotation databases" . "classification" . . . . "Identifiers for product types (product, price, and company data) based on Wikipedia"^^ . . "MGnify Genome" . "nfdi4ing" . "false"^^ . "true"^^ . . "false"^^ . "^[a-zA-Z0-9][A-Za-z0-9_]+$"^^ . . . "BioGRID Interactions" . . . . . "false"^^ . "http://sweetontology.net/phenGeolFault/$1"^^ . . "materials" . . "go-term enrichment data" . . . . "cell lines" . . . "http://www.alanwood.net/pesticides/$1.html"^^ . . . . "planp" . "^\\d{7}$"^^ . "ontology" . . . "gene" . . "http://www.ontologyrepository.com/CommonCoreOntologies/$1"^^ . . "ccon" . . . . . . . . . . . . "ess" . "https://www.diseasesdatabase.com/ddb$1.htm"^^ . . . "Mutant Mouse Resource and Research Centers" . "0000002"^^ . . . . . . . "false"^^ . . . . . "organ" . . . . "true"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Continental"^^ . . "This is the core module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . "transcriptomics" . . "engineering" . . "state" . . . "The AOPO provides classes and relationships for the semantic representation of the Adverse Outcome Pathway framework."^^ . "ontology" . . "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"^^ . "138488"^^ . "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs."^^ . . . "expression" . . "marine metagenome" . "sorepmfo" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Fluid"^^ . . . . "dataplant" . . "phenomena" . . "Rebecca Jackson" . . . "NFDI4Earth Ontology" . . "civil engineering" . "0000001"^^ . . "false"^^ . . . . . . "data identity and mapping" . . . . "Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank."^^ . . . "false"^^ . . . . . "david.lynn@flinders.edu.au" . "SWEET Ontology Phenomena Atmosphere Pressure" . . . "genome/gene" . . "post-translational modification" . "hydra" . . . . "^\\d{7}$"^^ . . "aacdb" . "http://purl.obolibrary.org/obo/EO_"^^ . . "Nalika Palayoor" . "https://bioregistry.io/metaregistry/scholia/"^^ . . "nfdi4ing" . . . . "eVOC (Expressed Sequence Annotation for Humans)" . "https://viperdb.org/Info_Page.php?VDB="^^ . . . . . "Zenodo" . . "http://purl.obolibrary.org/obo/NGBO_"^^ . "http://sweetontology.net/realmAstroStar/$1"^^ . . . . "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$"^^ . . "BioTop" . . . . "umls.sty" . . . . . "rat" . "ddi.typeofaddress" . . . . . "nfdixcs" . . . . "false"^^ . . . . . "Karen R. Christie" . . . "cdna/est" . . . . . . "inbio" . . "false"^^ . "false"^^ . "false"^^ . . . . "http://purl.obolibrary.org/obo/TO_"^^ . "https://fungi.ensembl.org/id/"^^ . "Higher order grouping of Pfam families"^^ . "http://sweetontology.net/propTime/$1"^^ . . . . . "instrument" . "life sciences" . "^\\d{7}$"^^ . . "microbial" . "Antony Williams" . "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)."^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_chem_"^^ . . . . "false"^^ . "model organisms" . . . . "http://wodaklab.org/iRefWeb/interaction/show/"^^ . "zfs" . . . . "cdna/est" . . "false"^^ . "Global Proteome Machine Database" . . "DLayer"^^ . . . "5.A.1.1.1"^^ . "pibase" . "https://purl.archive.org/tfsco/TFSCO_"^^ . . . "xeni.kechagioglou@lifewatch.eu" . "e-yasugi@umin.ac.jp" . "74"^^ . . "phosphopoint.kinase" . . "cthoyt@gmail.com" . . . . . "This ontology describes the RDF representation of the contents of the dblp computer science bibliography."^^ . "901001034"^^ . . . "Endeavor"^^ . . . "health_care_quality_assessment"^^ . "HUGO Gene Nomenclature Committee" . . . . . . "Cell line databases/resources"^^ . "PUBCHEM_CID" . . "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."^^ . "https://vocabularies.cessda.eu/vocabulary/rexgroups?lang=en#code_"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Human"^^ . . . "time" . . "biology" . "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment."^^ . "false"^^ . "The type of contributor of the resource."^^ . "false"^^ . "esco.model" . . "false"^^ . . . . "ndfrt" . . "Brain Architecture Knowledge Management System Neuroanatomical Ontology" . . "http://purl.obolibrary.org/obo/CIDO_$1"^^ . . . "https://www.clinpgx.org/accession/$1"^^ . . "d4e2515"^^ . . "https://unicarb-db.expasy.org/msData/$1"^^ . "Assigns identifiers to knowledge graphs (KGs) that are used and/or maintained within any NFDI consortium."^^ . . . "Multum MediSource Lexicon" . . . "ontology" . "ontology" . . "genome" . "http://virtualflybrain.org/reports/$1"^^ . "false"^^ . "ontology" . . "sequence" . "1-55516888-G-GA"^^ . "http://sweetontology.net/phenGeolSeismicity/$1"^^ . . "false"^^ . . "ratmap" . . . . . "Ontology, part of the SI Reference Point, covering measurement units (SI base units and SI units with special names) and prefixes."^^ . "http://purl.obolibrary.org/obo/NCIT_"^^ . "A frontend to Wikidata"^^ . . . "FHIR External Terminologies" . . . "ligea" . "physics" . . . . . . . . . . . . "false"^^ . "prov" . "https://spec.industrialontologies.org/ontology/"^^ . . "Ioannis Xenarios" . . . "toxoid" . "http://cegg.unige.ch/orthodb/results?searchtext=$1"^^ . . "biology" . "David.Linke@catalysis.de" . "false"^^ . . "preclinical studies" . . . . . "SysBioCancer2022"^^ . . . . . "gene" . "^(\\d+)|([a-zA-Z_]+)$"^^ . . "^.+$"^^ . "https://cohesindb.iqb.u-tokyo.ac.jp/browsepeak/eachpeak/"^^ . . . "genetic analysis" . . . "http://purl.obolibrary.org/obo/TAHE_"^^ . "organism" . . . . . . . . . "false"^^ . "0000038"^^ . . "biodiversity" . . . "chemical" . . . . . . "The Agriculture Product Types Ontology (APTO) is an ontology of types, meaning it does not contain individuals and is intended as a classification system for agricultural commodities price index databases in Brazil. This ontology contains labels and comments in both Portuguese and English. There are two main modules: :Organism and :Product_type. The :Organism class contains subclasses that represent the taxonomy of species related to the production of given product types. It imports taxonomic information from the Global Biodiversity Information Facility (GBIF) Backbone Taxonomy via API. The :Product_type class has six main subclasses organized into major groups: :Inorganic_compound :Animal_product :Plant_product :Raw_product :Processed_product :By-product The :Animal_product and :Plant_product classes include subclasses indicating the type of processing the product has undergone. These subclasses are also children of :Raw_product, :Processed_product, and :By-product. Object Properties APTO defines nine object properties: :has_ingredient and :is_ingredient_of (inverse properties): Indicate that a product type is used in the manufacturing of a processed product type (e.g., :Cow_cheese :has_ingredient :Cow_milk). :derives_from and :derives_in (inverse properties, imported from the Relations Ontology (RO)): Indicate that a product type originates from another product type (e.g., :Cocoa_almond :derives_from :Cocoa). :member_of_taxon (imported from the Biological Collections Ontology (BCO)): Indicates that an organismal entity belongs to a taxon (e.g., :Pacu :member_of_taxon :Piaractus_mesopotamicus). :produced_by and :produces (inverse properties, imported from RO): Indicate that an organismal entity produces a given type of product. For example, :Assai :produced_by :Assai_palm, and :Assai_palm :member_of_taxon :Euterpe_oleracea. If only the final product is listed in commodity databases and the rest of the organism holds no commercial value, the product is linked directly to the taxon (e.g., :Pineapple :produced_by :Ananas_comosus). :residue_of: Indicates that a by-product is the residue of manufacturing another product (e.g., :Whey :residue_of :Cheese). :is_a_hybrid_of: Specific to the :Organism subclasses, indicating a hybrid of two species (e.g., :Citrus_aurantium :is_a_hybrid_of ( :Citrus_reticulata and :Citrus_maxima ))., meaning it does not contain individuals and is intended as a classification system for agricultural commodities price index databases in Brazil. This ontology contains labels and comments in both Portuguese and English. There are two main modules: :Organism and :Product_type. The :Organism class contains subclasses that represent the taxonomy of species related to the production of given product types. It imports taxonomic information from the Global Biodiversity Information Facility (GBIF) Backbone Taxonomy via API. The :Product_type class has six main subclasses organized into major groups: :Inorganic_compound :Animal_product :Plant_product :Raw_product :Processed_product :By-product The :Animal_product and :Plant_product classes include subclasses indicating the type of processing the product has undergone."^^ . . . . . "data analysis service" . "mtbd" . . "cell replacement" . . . . . . "physics" . "Ge Gao" . . "BioAssay Ontology" . . "false"^^ . "LCCN Permalinks are persistent URLs for bibliographic records in the LC Catalog and authority records in LC Authorities. These links are constructed using the record's LCCN (or Library of Congress Control Number), an identifier assigned by the Library of Congress to bibliographic and authority records. LCCN Permalinks are also available for citation records in the Handbook for Latin American Studies (HLAS). [from homepage]"^^ . . "true"^^ . . . . "genetic variation" . "skills" . . "true"^^ . . . "UPLOC" . . . . . "Eleni Ilkou" . . . "false"^^ . . . . . . . "biology" . "bdsc" . . . . "authorea.author" . . "LIDO Terminology Repository Set Type" . . . . . . . . . . . "https://www.fluorophores.tugraz.at/substance/$1"^^ . . . . "The JEL Classification Codes Guide is now available online. Additionally, you may download an xml file of JEL Codes. JEL Codes are 3-digit, but EconLit searches require the use the four digit codes consisting of the 3-digit JEL code plus a 0. The EconLit subject descriptors are the same as the Journal of Economic Literature (JEL) classification codes."^^ . "14362"^^ . . . "https://portal.gdc.cancer.gov/cases/$1"^^ . . . . . "ontology" . "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N"^^ . . "industry" . . . "0000054"^^ . "covid-19" . . . . "life sciences, biology" . . . "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a"^^ . "hinv.protein" . . . . "^\\d{11}$"^^ . "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms."^^ . . . . "^[A-Z]{2}$"^^ . . "false"^^ . "http://terminology.lido-schema.org/$1"^^ . "sweet.phhe" . . . . "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality."^^ . . . . . . . . "ical" . . "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query="^^ . . . . . . "Raras Property" . "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1"^^ . . . "The UNESCO Thesaurus is a controlled and structured list of terms used in subject analysis and retrieval of documents and publications in the fields of education, culture, natural sciences, social and human sciences, communication and information. Continuously enriched and updated, its multidisciplinary terminology reflects the evolution of UNESCO's programmes and activities. [from homepage]"^^ . . . "bel" . . . . . "000000"^^ . "^\\d+$"^^ . "1"^^ . . "http://purl.obolibrary.org/obo/PLO_$1"^^ . . . . . "mutations" . . . . "Ontology about the development and life stages of the C. elegans"^^ . . "GLIDA Ligand" . . . . . "dbsnp" . "Continuous Automated Model Evaluation" . . "sorepsd" . "life cycle stage" . . . "false"^^ . "traumatology" . . . "http://aopkb.org/aop_ontology#$1"^^ . . . "https://purls.helmholtz-metadaten.de/"^^ . "http://cell-lines.toku-e.com/Cell-Lines_$1.html"^^ . . _:Nf6ab89ac4b1240da95c3912895da4d57 "mike.adams@bbsrc.ac.uk" . "Rebuilding a Kidney" . . . . "proteomicsdb.peptide" . "BioSample" . "http://edamontology.org/data_"^^ . . . "This ontology and the related TaxonConcept data set mints identifiers that are tied to a specific species concept which can have several names and classifications., Version 0.976 This is an ontology for dealing with data related to species including observations, specimens, images etc. Traditionally species have been identified by the combination of a genus and specific epithet, for example Puma concolor. However these names change frequently as new information moves a given species into a different genus etc. Most of the time the species concept itself is unchanged. This leads a lot of confusion and difficulty connecting data relating to a given species concept together. This ontology and the related TaxonConcept data set avoids this by minting identifiers that are tied to a specific species concept which can have several names and classifications. The RDF descriptions of each species concept provides some guide as to what is the best species concept for a given specimen or observation, and links together data sets containing additional information about that concept. Since some of these related data sets entail specific names or classifications they are loosely linked using skos:closeMatch etc. Depending on your particular needs, you might want to merge these in your own knowledge base as sameAs or simply merge those properties that you think are appropriate."^^ . . . . . . . . "0000003"^^ . . . "phosphosite.residue" . . . "zebrafish" . . . . . . "life science" . . . . . . . . "^PMC\\d+(\\.\\d+)?$"^^ . "http://wheat.pw.usda.gov/report?class=gene;name="^^ . . "The goal of the CGIAR Pearl Millet Ontology is to help improve food security for subsistence smallholder farmers in East and West Africa with productive and nutritious pearl millet food and fodder production technologies."^^ . "biomedical science" . "plant phenotypes and traits" . . . "atomistic" . "pesticideinfo" . . "false"^^ . "HSALNG0006197"^^ . "geologic seismicity" . . "https://www.sharkipedia.org/traits/$1"^^ . . . . . . . "vsdb" . "obo" . _:N1b8d923e0d8146a2b70af541a726f23e . . "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts."^^ . "http://w3id.org/ioc#$1"^^ . "SAREF4WEAR is an extension of SAREF for Wearables"^^ . . "false"^^ . "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]"^^ . . . . . . . . "ontology" . . . "atc" . "Cell line databases/resources"^^ . "Phy000CLXM_RAT"^^ . "false"^^ . . . . . . "false"^^ . . . . . . "ocean coastal" . "http://purl.obolibrary.org/obo/PD_ST_"^^ . . "https://www.kegg.jp/entry/"^^ . . "biopax" . . . . . "npo" . . . . "Digital Reference" . "Plant Growth and Development Stage" . "open science" . . "false"^^ . "nkos" . . . "false"^^ . . "sostth" . . "sio" . . . . . . "sopropche" . . . "https://cropontology.org/ontology/$1" . . "caripark@iastate.edu" . "false"^^ . "rna" . "true"^^ . . . "false"^^ . "enzyme and pathway databases" . "5112"^^ . "^\\d+$"^^ . "KEGG Glycan" . . . . "NodeShape"^^ . . . . . . . . . "Terence D. Murphy" . . . . "Genitourinary Development Molecular Anatomy Project" . "false"^^ . . . . "SWEET Ontology State Role Trust" . . _:Ncfe0635cb1b14e5db9d12b1ac030e96c "Adriano Souza" . . . . "0001056"^^ . . . . "GCF_000005845.2"^^ . . "https://vocabularies.cessda.eu/vocabulary/TypeOfNote?lang=en#code_"^^ . "false"^^ . . . "interaction/pathway" . "http://vocab.getty.edu/page/cona/"^^ . . "0400109"^^ . . . "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=$1"^^ . "MetaCyc Reaction" . "phagedive" . . "gemet.concept" . . "DSSTox substance" . . "false"^^ . "http://geneontology.org/docs/gene-product-information-gpi-format/#"^^ . . . "Dilfuza Djamalova" . . . . . . . "chemistry" . . . "mvx" . . . . . "^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$"^^ . . . _:N1be158e19ec84e4695a4f6c5bbfd58b4 "Filipi Miranda Soares" . . "false"^^ . "phenotype" . "jorvis@gmail.com" . "^\\d{7}$"^^ . "9"^^ . "energy flux" . "Tiffany J. Callahan" . . . . "Recommendation Ontology" . . "portal" . "mgriffit@wustl.edu" . . . . . . "2-s2.0-0030770923"^^ . . . "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits."^^ . "Mental Functioning Ontology" . . . "Olivier Bodenreider" . "false"^^ . . . "MO000027"^^ . . "false"^^ . . . . "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . . . . . "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD"^^ . . . . . . "000004"^^ . "molecular entity" . . . . . . "ontology" . "worm" . "http://terminologies.gfbio.org/terms/ETS/"^^ . . "ontology" . "^\\d+$"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Animal"^^ . . . . . "SWEET Ontology Representation Scientific Function" . . "https://www.kazusa.or.jp/rouge/gfpage/$1"^^ . . "Genotype Ontology" . "obo" . . . "9606"^^ . . . . . . "98127"^^ . . . "cell lines" . . . . . "disease" . "http://purl.obolibrary.org/obo/OHD_$1"^^ . "true"^^ . . . . "^\\d+$"^^ . . "^\\d+$"^^ . . "ino" . "2029"^^ . . . . . "Salmon Ontology" . "The Data Privacy Vocabulary provides an ontology (classes and properties) and taxonomies of concepts to represent information regarding how personal data is processed in the form of an ontology or a knowledge graph."^^ . . "false"^^ . "https://civicdb.org/links/drugs/$1"^^ . "http://purl.org/dcx/lrmi-vocabs/alignmentType/"^^ . . "1178"^^ . "ontology" . "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^ . . "Vietherb metabolite ID" . . . "Protein Model Portal" . . "^[-A-Za-z0-9\\_]*$"^^ . . "000001"^^ . "false"^^ . . "open educational resource" . . . . . . "Reference"^^ . "Cross-linker reagents ontology" . . "http://solgenomics.net/phenome/locus_display.pl?locus_id="^^ . "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1"^^ . "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein="^^ . "Altitude"^^ . "0000123"^^ . "nihgeneid" . "iclc" . "regulation" . . . "Stephen R. Heller" . . . . "^[a-zA-Z0-9_\\-]+(/.*?)?$"^^ . "Cancer Data Standards Registry and Repository" . "https://packagist.org/packages/$1"^^ . . "JWS Online" . . "SWEET Ontology Phenomena Atmosphere Wind Mesoscale" . . . . . "engineering" . " glacialland" . "SUPERFAMILY" . "https://w3id.org/geochem/1.0/analyticalmethod/$1"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Element"^^ . . "Yungang.Xu@xjtu.edu.cn" . "BioDeep Database" . . "iirds.core" . "true"^^ . "structure" . "false"^^ . . "modsci" . "502930"^^ . "^\\d+$"^^ . . "https://swissmodel.expasy.org/repository/uniprot/$1"^^ . . "hpm.protein" . . "dataplant" . "qualo" . . . . . . . _:Ne7c43a19806d44c58502b71cb6887b8d "Radiological Society of North America" . . "0000485"^^ . . "FuncBase Mouse" . "false"^^ . . "74"^^ . . "life science" . . "sayers@ncbi.nlm.nih.gov" . "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_"^^ . . "identifier for chemicals linked to information on occurrence in plants"^^ . . . . . . "false"^^ . . "https://ensaiosclinicos.gov.br/rg/$1"^^ . . "https://ngdc.cncb.ac.cn/lncbook/gene?geneid="^^ . "false"^^ . . . . "http://sweetontology.net/humanResearch/$1"^^ . . "https://publons.com/publon/"^^ . . "pseudomonas" . . . . "20.500.14351/5a7cdd09d9b65bc39697"^^ . . "^\\d+$"^^ . . "natural product" . "Physico-chemical methods and properties" . "mam@lbl.gov" . "maize" . "interaction" . . . "^[-_0-9A-Za-z]{12}$"^^ . "Markus Stocker" . "false"^^ . "dna" . . . "asin" . . "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides."^^ . "https://comptox.epa.gov/dashboard/$1"^^ . . "false"^^ . . "http://purl.obolibrary.org/obo/OBIB_$1"^^ . "000260236"^^ . . . . . . "text mining" . . "Emmanuel Guiderdoni" . "knowledge graph" . . "https://iso639-3.sil.org/code/"^^ . . "Demography"^^ . . . . . . . . . "Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business."^^ . . "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Jurisdiction"^^ . . . . "https://www.ebi.ac.uk/biosamples/sample/"^^ . . . "ddi.timezone" . . "assay" . "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$"^^ . . . . . . . . "https://biopragmatics.github.io/providers/cvx/$1"^^ . . . "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models."^^ . "SolidState"^^ . . . . "health science" . . . . . "3d structure" . "Gene Wiki" . . "sequence" . "Datasets in DEIMS SDR"^^ . "obo" . . . . . _:N1dbceccca0964fb880a533b8b5a5833e . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock"^^ . . . "phenomena" . . . . . "protein" . "https://www.nfdi.de/wp-content/uploads/2021/12/Logo_BERD-NFDI_transparent_gruen-schwarz_400px.png"^^ . "Nomenclature des unités territoriales statistiques" . "https://www.cytion.com/$1"^^ . _:Ncaa8beca435b4890bcea3df6078bb02b "cameron@rockefeller.edu" . . . "biopax" . . "0000109"^^ . . "http://geneontology.org/docs/gene-product-information-gpi-format/#$1"^^ . "http://www.narcis.nl/publication/RecordID/$1"^^ . "chemical compound" . . . "UK BioBank Category" . . "https://repo.napdi.org/study/"^^ . "sequence" . "http://iot.uni-trier.de/FTOnto#"^^ . . "Lycalopex_vetulus"^^ . . . "false"^^ . "Identifiers for relationships between proteins and complexes, along with their type and provenance"^^ . . . . . "dna" . . . . . "false"^^ . . "luana.licata@gmail.com" . . . . . "AirTraffic"^^ . "http://purl.obolibrary.org/obo/UBERON_"^^ . "jrct" . . . . . "false"^^ . . . "false"^^ . . . . . "http://www.lncrnadb.org/"^^ . . "http://nfdi4earth.de/ontology/"^^ . "https://www.uniprot.org/tissues/"^^ . . . "civil engineering" . "Harry Enke" . "Steffen Neumann" . . . . . "^\\w+$"^^ . "lincs.cell" . "phenomics" . . "http://sweetontology.net/phenBiol/"^^ . _:N7e868958aa3e419d80d084fb4072bccf "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . . . "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina."^^ . . "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."^^ . . "alzheimer's disease" . "http://purl.obolibrary.org/obo/IAO_"^^ . "has alternative prefix" . "genome" . "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"^^ . . . . "http://www.wikidata.org/entity/$1"^^ . . . . . "protein" . . . "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList"^^ . "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1"^^ . "74ed2670_657d_4f0b_b0a6_3f13bc2e9c17"^^ . . . "false"^^ . "region" . . . "Interlab Cell Line Collection" . "https://www.ebi.ac.uk/pdbsum/"^^ . . . "https://dialnet.unirioja.es/servlet/articulo?codigo="^^ . "oae" . "cellrepo" . . "265912"^^ . . . . . . "https://www.ebi.ac.uk/chembl/cell_line_report_card/"^^ . . "articles" . "https://bioregistry.io" . . . "Branch"^^ . "Signaling Network Open Resource" . . "supply" . . "muamith@utmb.edu" . "Database of Interacting Proteins" . . . "richard.scheuermann@nih.gov" . "genome/gene" . . . "si.constants" . . . . "1784"^^ . . "pspub" . . . . . "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"^^ . . "http://sweetontology.net/reprSciModel/"^^ . "proteomics" . . "SWEET Ontology State Chemical" . . "architecture" . . "dataplant" . "langual" . . . . . . . "^ILMN_\\d+$"^^ . "Database of validation results for ligands and non-standard residues in the Protein Data Bank."^^ . "metacyc.reaction" . . . "https://gdo.endlessforms.info/view/classes?uuid=GDO_$1"^^ . "anatomy" . "ecosystem science" . . "https://terminology.hl7.org/CodeSystem-v3-$1"^^ . . . . "genetics" . "\"Dendritic cell\" is a standard, specialising in the fields described under \"scope and data types\", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/DC_CL. This text was generated automatically. If you work on the project responsible for \"Dendritic cell\" then please consider helping us by claiming this record and updating it appropriately."^^ . . . "Regulation of Gene Expression"^^ . . . . "http://www.cathdb.info/cathnode/"^^ . . "bioresource" . "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1"^^ . "^CA\\d+$"^^ . "false"^^ . "codata.rdmt" . . . . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$"^^ . "3dmet" . "false"^^ . "dc06de9f-dd3a-4f28-b58f-b01b5ae72ab8"^^ . . . . . "Ontology of Vaccine Adverse Events" . "https://molbic.idrblab.net/data/protein/details/$1"^^ . . . "Pesticide Properties DataBase" . "metadata" . "obo" . "microbial" . " volcanicland" . "Cell line databases/resources"^^ . "gpmdb" . . "gene" . . . . . "ontology" . "^.+$"^^ . . "https://bioregistry.io/metaregistry/prefixcommons/$1"^^ . "https://w3id.org/polymat/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Industrial"^^ . . "obo" . . . . "confident.series" . "article" . . . . . . "esco.isco" . "AB_262044"^^ . . . "GrainGenes reference" . . "false"^^ . . . "bibliometrics" . . . _:Nd95aa1fd67c446a0823e51b902d8932f . . . "Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries."^^ . . "ontology" . . . . . . . "false"^^ . "74.186"^^ . . . . "bibliometrics" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Plant"^^ . "transposon family" . "OpenEduHub Education Level" . "false"^^ . . . "SWEET Ontology Phenomena Ecology" . . "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."^^ . . . "Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes."^^ . . "https://molbic.idrblab.net/data/compound/details/"^^ . "dna" . "http://sweetontology.net/phenAtmoWind/$1"^^ . . . . "Affymetrix Probeset" . "ximbio" . "dataplant" . . "structure" . . "kanehisa@kuicr.kyoto-u.ac.jp" . . . "http://scop.berkeley.edu/sid="^^ . . "mpid" . "Multiplexed Assays of Variant Effect Database" . . "AA0001"^^ . . "false"^^ . . . "614"^^ . "http://purl.obolibrary.org/obo/CDNO_$1"^^ . . . "false"^^ . . . . . "The collections section of HuBMAP groups related datasets, samples, and metadata into organized categories. Each collection has a unique identifier that links it to its constituent datasets."^^ . "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_"^^ . "protein" . "structure" . . . "sequence" . . . "mgiglio@som.umaryland.edu" . "m.a.laporte@cgiar.org" . "http://lincsportal.ccs.miami.edu/datasets/#/view/$1"^^ . . "Over the years, GOV has developed into a tool for genealogists, historians and other researchers that allows uniform access to a wide range of location-related data, especially to information that is important for the work of family researchers.:\n\n- Geographical location of the place (coordinates or display on a map)\n- Various key numbers (zip code, municipality code, etc.)\n- Foreign or historic names\n- Historical affiliation (administrative, ecclesiastical, etc.) based on current affiliations\n\nChurches, church districts, towns, counties, regions, etc. can be found in the GOV. Internally, an entry is generally referred to as a GOV object. [from homepage]"^^ . . . . . . "MeDRA" . . . . . "183"^^ . "0000008"^^ . . "http://www.w3.org/ns/ssn/systems/"^^ . . . "^AT\\d+$"^^ . . . "dictybase.gene" . . . . . . . . "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)."^^ . . . "000177759000002"^^ . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Dataset" . "https://www.rsc.org/Merck-Index/reaction/"^^ . . . . . . "85163"^^ . . . . . "https://www.brenda-enzymes.de/ligand.php?brenda_group_id="^^ . . . . . "0000000"^^ . "myco.lepra" . . . "jecfa" . "^DRKS\\d+$"^^ . . . . "euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information."^^ . "http://uri.neuinfo.org/nif/nifstd/nifext_$1"^^ . "false"^^ . "ontology" . "Disease Class" . . . . "This ontology extends the SAREF ontology for the smart grid domain."^^ . . . "The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included."^^ . "false"^^ . . . . "https://i.uestc.edu.cn/AACDB/details.php?id="^^ . "http://sweetontology.net/realmLandProtected/$1"^^ . . "The FIESTA-IoT ontology takes inspiration from the well-known Noy et al. methodology for reusing and interconnecting existing ontologies. To build the ontology, we leverage a number of core concepts from various mainstream ontologies and taxonomies, such as Semantic Sensor Network (SSN), M3-lite (a lite version of M3 ontology), WGS84, IoT-lite, Time, and DUL ontology."^^ . "false"^^ . "ontology" . . . . "getty.ia" . . . "Used for operations in SPARQL, such as ceil() and bound()."^^ . . "chemistry" . . . . . "https://portal.issn.org/resource/ISSN/$1"^^ . "salk" . . _:N5d822cf90fab4624a62667b91665eb5b "Gregg Kellogg" . . . "observations" . . "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode="^^ . . . "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."^^ . . . . "Plant Phenotype Experiment Ontology" . . "ontology" . . "http://purl.obolibrary.org/obo/XLMOD_"^^ . . "https://uts.nlm.nih.gov/uts/umls/semantic-network/$1"^^ . . "https://www.chemspider.com/search?params="^^ . . "6017782"^^ . . . "00166"^^ . . "Lukas A. Mueller" . . "false"^^ . . . . . . . "lcnafid" . . . "obo" . . "^\\d+$"^^ . . . "EP0311"^^ . . "obo" . . "^\\d+$"^^ . . "disease" . . "sequence" . _:N54234c743b464ca3b0b4ed8f24c7a9c1 "Kim Durante" . . . "https://www.genenames.org/cgi-bin/genefamilies/set/"^^ . "ontology" . "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene."^^ . "https://www.ncbi.nlm.nih.gov/gtr/tests/$1"^^ . . "istransbase" . . "false"^^ . "Terms used to classify groups of sensors, instruments, sources of algorithmically computed data (numerical models) or samplers (collectors of water, SPM, sediment, rock, air or biota samples)."^^ . . "false"^^ . . . "ecn" . . . . . . . "ontology/terminology/nomenclature" . "0000001"^^ . . "neuron" . . . "rdbsb" . . . . "jiezheng@pennmedicine.upenn.edu" . "heike.goerzig@helmholtz-berlin.de" . . . "false"^^ . "ADH1"^^ . . . . . . . . . . "life science" . . . . . . "An ontology representing the gross anatomy of Drosophila melanogaster."^^ . . . . "false"^^ . . "ontology" . "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1"^^ . "iao.issue" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Orographic"^^ . . "10008"^^ . . . . "false"^^ . . . . "Damion Dooley" . . . "Matthew Brush" . . "http://purl.obolibrary.org/obo/DISDRIV_$1"^^ . . "ontology" . . "https://grch38.togovar.org/variant/$1"^^ . "https://scicrunch.org/scicrunch/interlex/view/ilx_"^^ . "https://inspire.ec.europa.eu/theme/$1"^^ . "false"^^ . . "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=$1"^^ . _:N3f0859c4372941b1bedda0c6f2842a77 . . "false"^^ . "^PA\\d+$"^^ . . . "false"^^ . . . . . . "subtilist" . . "w3c rec" . . . "canal"^^ . "Ontology for Chemical Kinetic Reaction Mechanisms" . . "seed.reaction" . . . . "false"^^ . "pato" . . "https://ferr.gulab.org.cn/browse/$1"^^ . . . "ProtClustDB" . "microbial" . . . "Ontology for MicroRNA Target" . . . "0000984"^^ . . . "opl" . . "foaf" . . . "false"^^ . "lipro" . . . . "David S. Wishart" . . . "sweet.propcou" . . _:Nc302bc4ca55a4cb88c2531c5da5437ca "esip-semanticweb@lists.esipfed.org" . "G00123"^^ . . "https://datalab.rwth-aachen.de/MINDER/resource/"^^ . "https://www.researchgate.net/profile/"^^ . . "false"^^ . . . . . . . "somamic" . "SWEET Ontology State Visibility" . "MESHC" . "johnbeverley2021@u.northwestern.edu" . "false"^^ . . . "p001"^^ . "false"^^ . "DarwinPoint"^^ . . . . . . . "Quality"^^ . "https://archive.softwareheritage.org/browse/swh:"^^ . _:N892302d7b4dc4106bbcc88abd65eb7ea . . "ontology" . . "00000008"^^ . . "0000400"^^ . . "ohmi" . . "ontology" . . _:Ne490a5cace6c4b88ade68c86ab29d43f "Jonathan Bard" . "computer science" . . . . . . "ontology" . "wot.security" . "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . . . . "https://spdx.org/rdf/3/terms/$1"^^ . . . . . . "https://w3id.org/nmdc/$1"^^ . . . . . . . "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"^^ . "The Smart Applications REFerence ontology (SAREF) is intended to enable interoperability between solutions from different providers and among various activity sectors in the Internet of Things (IoT), thus contributing to the development of the global digital market."^^ . . "UniProtKB" . . "3d structure" . . "family and domain databases" . . "false"^^ . . "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data."^^ . . . "false"^^ . . . "karel.berka@upol.cz" . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME"^^ . . "The information resource registry is a listing of data sources present in the NCATS Data Translator system. Each information resource has an identifier, a short description, and a URL to more information about that resource."^^ . . . . "unit" . "https://www.thermofisher.com/antibody/product/$1"^^ . "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)."^^ . . . . . . . "bacterin-toxoid" . _:Ndd6bf160241a4e67a73d81023302d92c "info@wikidata.org" . . . "Asiyah Yu Lin" . "CESSDA Persistent Identifier Types" . . . . "false"^^ . "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data"^^ . "false"^^ . . "false"^^ . . "SARS-CoV-2" . "daae3565-dc29-4de6-af13-f7db239f95b7"^^ . . "icd10pcs" . . . . . "http://purl.org/heritagedata/schemes/mda_obj/concepts/"^^ . . "6376"^^ . . . . . . "COG Pathways" . "Medaka fish anatomy and development" . . . . . . "structure" . "Crisis and hazard related taxonomy developed by CRED for disaster preparedness and humanitarian actions at national and international level."^^ . "genome/gene" . "Birgit Meldal" . "Yongqun Oliver He" . . . . . . . . "health science" . . . "polymat" . . "THE1B"^^ . . . . . . "A subset of Library of Congress (LOC) subject headings"^^ . . . . . . "dna" . . . "true"^^ . "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments."^^ . "http://purl.org/spar/deo/$1"^^ . "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."^^ . . "EcoLexicon" . . "events" . . . . . "false"^^ . "https://www.pesticideinfo.org/chemical/"^^ . "http://cutdb.burnham.org/relation/show/"^^ . . . "^PT\\d+$"^^ . . . . "cessda.cessdapersistentidentifiertypes" . "http://www.iresite.org/IRESite_web.php?page=view&entry_id="^^ . . "https://e-cyanobacterium.org/bcs/rule/$1"^^ . . "^PA\\d+$"^^ . . "2011488555"^^ . "NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites"^^ . . "nuclear magnetic resonance spectroscopy" . "dna" . . . "Carl F. Schaefer" . . "developmental biology" . "obo" . . "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information."^^ . . . . . . "ped.ensemble" . "http://sweetontology.net/propCategorical/"^^ . . . "sweet.maind" . . . "^AA\\d{4}$"^^ . "46946"^^ . "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references."^^ . . "ontology" . "2"^^ . . "Packagist" . . "cell cycle" . . . . . . "qsproteome" . . "Yeast Deletion and the Mitochondrial Proteomics Project" . . "_4dn.biosource" . . "stap" . "D00123"^^ . "icechem" . "diseasesdb" . "Histopathology Ontology" . . . "false"^^ . "http://sweetontology.net/propCharge/$1"^^ . "TA_H3"^^ . . . . . "itis" . "false"^^ . . "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies."^^ . "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines."^^ . . . . "^\\d+$"^^ . . "astronomy and astrophysics" . "^[0-9]+$"^^ . "obo" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Transport"^^ . "PMADS" . "Sergio José Rodríguez Méndez" . . "biomedical science" . . . . . . . . "9606"^^ . . . "relationships" . "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1"^^ . . . . . . . . "metabolite" . . . . "false"^^ . "glyconavi" . "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$"^^ . "false"^^ . . "plm" . . "metpo" . "sopropsl" . . . "false"^^ . . . . "chemical structure" . "http://sweetontology.net/phenSolid/"^^ . "DragonDB Protein" . "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways."^^ . "http://purl.obolibrary.org/obo/HOM_$1"^^ . "rbk" . . "https://git.onem2m.org/MAS/BaseOntology/raw/master/base_ontology.owl#$1"^^ . . "NCI Pathway Interaction Database: Pathway" . . . "sostst" . . . . . "This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family."^^ . . "metabolic model" . . . . . "false"^^ . . . "sbml" . . "Sigma Aldrich" . . "palayoor.n@northeastern.edu" . . . . . "NCI" . . "hagr.gendr" . . "kegg_genomes" . . "interaction/pathway" . "life sciences, biology" . . "chemistry" . . . "mentions" . "http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1"^^ . . "http://cerevisiae.oridb.org/details.php?id="^^ . "https://www.genenames.org/cgi-bin/genefamilies/set/$1"^^ . . "obo" . . "ID in NIAID ChemDB"^^ . . . . "cordis.basis" . . . . . . "false"^^ . . . . "natural resource" . . "agriculture" . . . "http://yeastrc.org/pdr/viewProtein.do?id="^^ . "tao" . "BARC-013845-01256"^^ . . . . . "https://fcs-free.org/fcs-database?"^^ . "https://cells.ebisc.org/"^^ . "The data model underlying lexvo"^^ . . . "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover."^^ . "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1"^^ . "^\\d+$"^^ . "JCRB1355"^^ . . . "Peter Midford" . "false"^^ . "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID="^^ . . . "biochemistry" . "International System of Units Reference Point" . . . "146421"^^ . . "https://ec.europa.eu/info/funding-tenders/opportunities/portal/screen/opportunities/topic-details/$1"^^ . . . . . . . "protein" . "https://deims.org/activity/"^^ . . . "ontology" . . . . "Susan Tweedie" . . "https://data.chembiosys.de/data_files/"^^ . "false"^^ . . . "false"^^ . . . . . "^\\d+$"^^ . . "ontology" . "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."^^ . "An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF."^^ . "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$"^^ . "false"^^ . "false"^^ . . . . . . "educational resources" . "^\\d{7}$"^^ . "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1"^^ . . "ontology" . "https://www.w3.org/2019/wot/security#"^^ . . "ontology" . . "^\\w+$"^^ . . . "environmental impact" . "Golm Metabolome Database Profile" . . . . . . . . . . "ontology" . . . "Semantic Mapping Vocabulary" . . . "cell" . "SWEET Ontology Material Elemental Molecule" . . "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1"^^ . . . . . "false"^^ . "false"^^ . . . . . . . . "sopropti" . "Common Terminology Criteria for Adverse Events" . . . . . . . . . . "Damien Goutte-Gattat" . "^\\d+$"^^ . . . . . . . . . . . . . "5277619"^^ . "lncbook" . "obo" . . . . . . . "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1"^^ . "nucleotide" . . . "ygyingli@ncsu.edu" . . "^\\d+$"^^ . . . . . . "addgene" . . . "sequence databases" . . . "seinet" . "http://vocabulary.odm2.org/specimentype/$1"^^ . . . "A collection of ontologies, controlled vocabularies, and schemas relevant for the FAIRmat Consortium seeded from corresponding the [TIB OLS collection](https://service.tib.eu/terminology/collections/fairmat)." . "http://rdfs.org/sioc/actions#"^^ . . . . . "The Sorghum Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . "uniprot.proteome" . "Search the world's most comprehensive index of full-text books."^^ . . "otl" . "000000341"^^ . "International Clinical Trials Registry Platform" . . . . . . . . . . . . . "D053716"^^ . "tissue" . . . "false"^^ . "ecg" . . . . . "AreaNetwork"^^ . . . . . . "life sciences, biology" . . . "biochemistry" . "perturbation" . . "KCT0008394"^^ . . . . "SWEET Ontology Process Wave" . "clarin.clavas" . . "https://w3id.org/i40/sto#$1"^^ . "false"^^ . "https://coicatalogue.uc.pt/index.php?t=specimen&COINumber=$1"^^ . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Brachiaria Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "https://data.chembiosys.de/studies/$1"^^ . . . "https://www.nextprot.org/term/$1"^^ . . "0000138"^^ . . . "metadata" . "bsweeney@ebi.ac.uk" . . . "Chickpea Ontology" . "Wes Schafer" . "Vertebrate skeletal anatomy ontology."^^ . . . . . . . "https://dblp.org/rec/"^^ . . "NX_O00165"^^ . . "nfdi4ing" . "A vocabulary of knowledge, skills and competences relevant to the European labour market. In ESCO v1.2.0, the skills pillar is structured in a hierarchy which contains the following four sub-classifications: 1) Knowledge, 2) Language skills and knowledge, 3) Skills, and 4) Transversal skills. [adapted from homepage]"^^ . . . . . . . "0003fc3f-1522-4fca-bf3f-bcef0dcec405"^^ . . . "vaccine" . . . . . "metabolites" . "https://saref.etsi.org/saref4syst/$1"^^ . . . . . "genome/gene" . "ENSFM00500000270089"^^ . . . . . . . "Common Entity Data Standards - Domain Entity Schema" . . . . . . "iot" . "^\\d+$"^^ . . . "https://graphics.endlessforms.info/library?id="^^ . "kegg.glycan" . . . . . . . "https://www.ebi.ac.uk/intact/search?query="^^ . . "chemistry" . . "http://purl.obolibrary.org/obo/SBO_$1"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Natural Resource"^^ . . . "78"^^ . . . "genetic variation" . . "ODAM Data explorer" . . . . . "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles."^^ . . . . "material science" . . "ontology" . "endlessforms.element" . . "false"^^ . . "http://scop.berkeley.edu/sccs=$1"^^ . . "electronic health record" . "civil engineering" . "phenotype" . _:Nb40cb199dfa34228b92685a13aa806c2 "Fathoni A. Musyaffa" . "rosetta" . "https://www.ncbi.nlm.nih.gov/books/"^^ . . "annotation" . . . . "false"^^ . . . "docbias" . . . "^\\d+$"^^ . . "ALX-210-175"^^ . . "0000046"^^ . . "RE" . "sostb" . "http://stitch.embl.de/interactions/"^^ . "^[0-9X\\-]+$"^^ . . . "mgnifygenome" . . . . "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC."^^ . . "coypu" . "http://purl.obolibrary.org/obo/OPMI_$1"^^ . "https://w3id.org/bot#"^^ . "https://model.geneontology.org/"^^ . "mp" . . . . . . . "proteins" . "public finance" . . . . "https://onto.tib.eu/destf/cs/$1"^^ . . "https://www.ncbi.nlm.nih.gov/nuccore/"^^ . . . . . . . "http://sweetontology.net/stateTimeCycle/"^^ . "IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively."^^ . . . "https://www.kerafast.com/Search?SearchTerm="$1""^^ . . "material science" . . "https://tools.ietf.org/rfc/rfc$1"^^ . . . "https://doi.org/$1"^^ . . . "Identifiers repesent antimicrobial peptides in the Data Repository of Antimicrobial Peptides (DRAMP) database which is an open-access, manually curated database of antimicrobial peptides (AMPs)."^^ . "chemical compound" . "Jawahar Swaminathan" . "false"^^ . . "false"^^ . "http://birdgenenames.org/cgnc/GeneReport?id=$1"^^ . "life science" . "dblp.author" . . "chromatography" . . "mmp.fun" . "damion_dooley@sfu.ca" . . . . . . . "false"^^ . . "^CPX-[0-9]+$"^^ . "Common Bean Ontology" . "https://iconclass.org/"^^ . . . "TreeFam" . . . "protein" . "E-cyanobacterium rule" . . . "Accept"^^ . . "ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides identifiers for curations representing evidence aggregation and expert panel assertions based on standardized evaluation procedures"^^ . . _:N0f8b242459da4106aedd66d3f954b5c7 "alexander.wolodkin@senckenberg.de" . "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature."^^ . "power engineering" . . "false"^^ . "computer science" . . "Shorthand representations of languages and their subtypes"^^ . . "http://sweetontology.net/humanEnvirStandards/$1"^^ . "datacite.identifier" . . . "SWEET Ontology Property Space" . . . . . . "false"^^ . "BioPortal" . . . "biolegend" . . . "neuromorpho" . . . . . "false"^^ . "experimentally determined" . . "chemical" . . . . "genome/gene" . . "ddi.typeofconceptgroup" . "false"^^ . "identifier for an academic research group issued by the CNRS"^^ . . . . . . "false"^^ . . . "0000000"^^ . "structure" . "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank."^^ . . "RoleInTime"^^ . "0000055"^^ . . "http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"^^ . "chmo" . "sigmaaldrich" . "zmp@ebi.ac.uk" . "cognition" . . . . . "^(CN)?\\d{2,7}$"^^ . "realm" . . "http://purl.obolibrary.org/obo/NIF_CELL_$1"^^ . "false"^^ . "false"^^ . "health science" . . "false"^^ . "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."^^ . . . "cdna/est" . . "person" . . . "95054"^^ . . . . . "Structural Classification of Proteins - Unique Identifier" . "bigg.model" . . . "https://panoramaweb.org/$1.url"^^ . . . . "lido.actor" . . "Human Ancestry Ontology" . . . . "false"^^ . . . "10.2.1.1.3"^^ . "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . "FlyBase internal citation identifiers"^^ . . . "representation data service geospatial" . "unpd" . "https://lov.linkeddata.es/dataset/lov/vocabs/$1" . . . "cell" . . "Activation"^^ . . . . "National Science Foundation Award" . "http://sweetontology.net/stateFluid/"^^ . . "GCF_000001405"^^ . "engineering" . "pathway" . "63250"^^ . . "iirds.mch" . . . . . . "Identifiers for references, typically linking to sources of evidence such as publications that support data within IEDB."^^ . . "protein" . "combine.specifications" . . "human" . "https://w3id.org/oc/corpus/"^^ . . . . . . "anthropology" . "jeffvin.wong@utoronto.ca" . . . . . . . . . . "radiomics" . "0007404"^^ . . . . "false"^^ . . . "The Bacterial and Viral Bioinformatics Resource Center (BV-BRC) annotates features onto specific genomic sequences, such as gene/protein families and their functional impacts. This record represents a sample-specific genome."^^ . "http://scicrunch.org/resolver/SCR_$1"^^ . . "https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code="^^ . "transportation planning" . "https://oprlm.org/proteins/$1"^^ . "true"^^ . "http://qudt.org/schema/qudt#$1"^^ . "http://purl.obolibrary.org/obo/EV_"^^ . . "^\\w.+$"^^ . "PGS000018"^^ . "http://clipserve.clip.ubc.ca/topfind/proteins/"^^ . . "obo" . . . . . "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1"^^ . . . "jcggdb" . "https://cropontology.org/rdf/CO_333:$1"^^ . . . . . . "msigdb" . . . "ribonucleic acid" . . . . "https://model.geneontology.org/$1"^^ . . "https://www.findacode.com/code.php?set=ICD10PCS&c=$1"^^ . "P29894"^^ . "Hugh P Shanahan" . "Maria Gould" . "http://vocab.nerc.ac.uk/collection/P06/current/"^^ . . . . . . . "false"^^ . "00000022"^^ . "https://www.atcc.org/products/"^^ . . "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes."^^ . . . . "1915"^^ . . . . . . . . . . "state space scale" . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Fault"^^ . . . . "3075966"^^ . . . . . . . . . . . . . . . "representation scientific model" . "anatomy" . . . . "Cell Biolabs cell line products" . . . "ontology" . . "0000088"^^ . . . "Microarray experimental conditions" . . . . . . . "RepresentativeRole"^^ . . . . . "classification" . . . . . . "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration."^^ . . . . "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1"^^ . "UBREL" . . . . . "^\\d{7}$"^^ . . . "ISFinder" . . "doi" . "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1"^^ . . . . . "https://www.wormbase.org/get?name="^^ . "https://bioregistry.io/leafsnap:"^^ . "4140"^^ . . . _:N294177fe82ca4f65a2492048be158461 . . "http://eugenes.org:7072/.bin/fbidq.html?"^^ . "identifier for a document in IEEE Xplore"^^ . . . "false"^^ . . "https://bcrj.org.br/pesquisa/?search="^^ . . . . . . "This CV, developed within the framework of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the dimensions of discrimination and racialised characteristics relevant to the research area. The compilation is based on a systematic evaluation of the relevant national and international empirical research literature. These include self-attributed characteristics as well as anticipated attributions by others. The characteristics do not necessarily correspond to the studied units in the data set, but can also be the subject of studied concepts or theories in the surveys, such as on specific prejudices and attitudes."^^ . "ontology/terminology/nomenclature" . . . "IntellectualContribution"^^ . "false"^^ . . . . . . . "http://purl.org/net/orth#$1"^^ . . . . "https://lov.linkeddata.es" . "https://vocabularies.cessda.eu/vocabulary/ContributorRole?lang=en#code_"^^ . . "identifier for an author on the Authorea writing service"^^ . . "disease" . . . . . . . "Language"^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Physical"^^ . "false"^^ . "An ontology of core ecological entities" . "http://purl.obolibrary.org/obo/OMP_$1"^^ . "https://nobias-project.eu/nobias/$1"^^ . . . . "F3436"^^ . . . . . . . . . . "Publishing Roles Ontology" . . . . . . "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source."^^ . . . . "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms."^^ . "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions."^^ . . "http://ensembl.org/glossary/ENSGLOSSARY_"^^ . "TaxonomyID" . . . . "A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum"^^ . . . . "https://terms.codata.org/rdmt/$1"^^ . _:N040a397889f74f62be98b5d1da35be64 . . . . . . "1000160"^^ . "experimental measurement" . "clinical studies" . "BiogeochemicalCycle"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Soil"^^ . . . . . "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . "https://bioregistry.io/metaregistry/biocontext/$1" . . . . . . "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present."^^ . "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id="^^ . "^KW-\\d{4}$"^^ . "Denny Vrandečić" . "clinvar.submission" . . _:Nb77b3b82127a4e5b8d29e60503d40f84 "Bgee team" . . "STUDY1040"^^ . . "http://www.genome.jp/dbget-bin/www_bget?aaindex:"^^ . "pathway" . . . . "https://www.metanetx.org/equa_info/"^^ . . . "protein" . . . . . . . "https://purl.org/sms-ontology#$1"^^ . . "A vocabulary for the catalysis disciplines" . "http://sweetontology.net/phenEnergy/"^^ . . . . . "earthcube.aut" . . "cell biology" . . . . . . "fobi" . . "false"^^ . "http://www.ymdb.ca/compounds/"^^ . "http://iirds.tekom.de/iirds#$1"^^ . . "The European Skills, Competences, Qualifications and Occupations (ESCO) International Standard Classification of Occupations (ISCO)."^^ . "http://purl.obolibrary.org/obo/SO_$1"^^ . . "TreeBASE" . "genome" . "The chemical information ontology (cheminf) describes information entities about chemical entities. It provides qualitative and quantitative attributes to richly describe chemicals."^^ . "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1"^^ . "http://purl.obolibrary.org/obo/TO_$1"^^ . . . "false"^^ . . . . "40565"^^ . . . . . . . . . . . "NPA000001"^^ . . . "K"^^ . . . . . . "nfdi4ing" . "bcrc" . "isDocumentRelatedTo"^^ . "soybase" . "bibliography/documents" . . . . . . "This semantic artifact describes the semantic relationships between entities which model the setup of a biodiversity monitoring project based on capturing audiovisual digital recordings. It encodes the semantics of the Wildlife Monitoring Ontology and at the same time provides the datamodel behind the wildlive.senckenberg.de platform."^^ . "obo" . "health science" . "sopho" . "pieter.mestdagh@ugent.be" . "ZOBODAT taxon ID" . "^\\d+$"^^ . . . "https://data.chembiosys.de/institutions/$1"^^ . "disease" . . "false"^^ . "false"^^ . . "https://www.leadscope.com/structure_search_results.php?ss_string="^^ . "Biomedical Informatics Research Network Lexicon" . . "human genome" . "^[A-Za-z0-9]+$"^^ . . . . . . . . . "fid baudigital" . "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1"^^ . _:N103732f962d342e5b3189cca26ebb029 "Ian Davis" . "http://www.crop2ml.org/cropmdb/"^^ . . "preclinical studies" . . . "Peter D. Karp" . "fly" . . . . . "ebusiness" . "false"^^ . . "https://images.endlessforms.info/collection/"^^ . "livestock" . "A collaborative project intended to create an encyclopedia documenting all living species known to science"^^ . "false"^^ . . "https://www.w3.org/2019/wot/td#$1"^^ . . . "Perry Miller" . . . . . . . "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1"^^ . . "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest."^^ . "http://www.ebi.ac.uk/efo/EFO_$1"^^ . "pandit" . . . . . . . . . . . . . . . . "nfdi4ing" . "false"^^ . "DBLP author ID" . . "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets"^^ . "doi"^^ . . _:N1be158e19ec84e4695a4f6c5bbfd58b4 . . "https://pmb-bordeaux.fr/maggot/metadata/$1"^^ . "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . . . . . "false"^^ . "classification" . . "curated information" . . . "anatomy" . . . . "http://purl.obolibrary.org/obo/"^^ . . "ebf69ca24298b28b2361e7d43eb52d6c"^^ . "false"^^ . . "FDA Application" . "http://biohackathon.org/resource/hco#$1"^^ . . "cyril.pommier@inrae.fr" . . . . . . "NeXusOntology: Machine-readable ontology of the NeXus definitions"^^ . . "false"^^ . . "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf"^^ . "Leigh Carmody" . "^[1-9]\\d*$"^^ . "http://si-digital-framework.org/SI#"^^ . . . . . . . "protein" . "annotation" . . "http://www.w3.org/ns/ssn/"^^ . . . . . . "swisslipid" . . . "biomedical science" . . . "usda.cvb.pcn" . . . . . . . . . "biopax" . "Alzheimer's Disease Ontology" . . . "^MDB\\d{8}$"^^ . . "microarray" . . . "^\\d+$"^^ . . . "https://bbp.epfl.ch/nexus/web/studios/public/"^^ . "The LIDO Repository/Location Set Type-Vocabulary is a structured controlled list of terms recommended to use as values for the Repository/Location Set element.\nThe type attribute indicates the kind of repository or location as the current or a former one."^^ . . "sequence" . . "https://data.chembiosys.de/organisms/"^^ . "EDCC Taxonomy contains the terms that are used to classify citizens' requests to the Europe Direct Contact Centre (EDCC). EDCC Taxonomy is maintained by the Directorate-General for Communication of the European Commission and published by the Publications Office of the European Union on the EU Vocabularies website."^^ . . . . "http://purl.obolibrary.org/obo/CTENO_"^^ . "CHEMBL3559721"^^ . . "http://terminology.lido-schema.org/eventType/$1"^^ . "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"^^ . . "Metabolites in drugbank"^^ . . . "data retrieval" . "Library of Congress Relator" . "genome/gene" . . "ismail.fliss@fsaa.ulaval.ca" . . . . . . . . . . . "https://registry.bio2kg.org/resource/$1" . "https://www.omicsdi.org/dataset/massive/"^^ . . . "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1"^^ . . . . . . . "SupraBank Buffer" . "realm" . . . . . . . "false"^^ . "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . . "false"^^ . "rfam" . . "^\\d+$"^^ . . . . . . . "Alzforum Mutations" . "ICEberg integrative and conjugative element" . "computer science" . . "Holistic Ontology for semiconductor manufacturing and development, products and systems containing semiconductors and connected supply chains."^^ . . . "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm"^^ . "false"^^ . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Decision"^^ . . . . . . . "Shape Expression Vocabulary" . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the Text+ Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying Text+ Consortium members appropriate for maintaining this collection." . "bioresource" . "^\\d{7}$"^^ . "Digical Object Container Identifier" . . "Genetic and Rare Diseases Information Center" . "ActiveRegion"^^ . "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features."^^ . . . . "data analysis" . "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" . "iot" . "obo" . . . "https://registry.identifiers.org/registry/"^^ . "genome" . . . "gnpis" . . "udsaes.sms" . "^\\d+$"^^ . "01013"^^ . . "Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy Flux"^^ . . . . . . . . . . . . . . . . . "strain" . . . . . . . "agriculture" . . "false"^^ . . "http://purl.obolibrary.org/obo/IAO_$1"^^ . . . . . . . "https://cropontology.org/rdf/CO_356:$1"^^ . . . . "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id="^^ . . "pathway" . "This vocabulary was created in the FOAF project, based on experience with FOAF, Dublin Core and other early RDF vocabularies. Deployment experience shows that changing namespace URIs is expensive and unrewarding, so this vocabulary provides terms to support in-place evolution of structured data vocabularies. By indicating status at the level of terms rather than vocabularies, dictionary-style, fine grained improvements become easier. Different organizations and parties can agree or disagree on the status of a vocabulary term; however the status published alongside the term may deserve special attention. Future work could include patterns for citing announcements and decisions, or using SKOS to decentralise the extension of the basic status levels. (from artifact)"^^ . . . . . "TaxonConcept Ontology" . . "http://purl.obolibrary.org/obo/FBcv_"^^ . "^\\d{8}$"^^ . "^\\d{7}$"^^ . "Digital Construction Lifecycle (dicl)" . "true"^^ . . . "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam="^^ . . . "jacobo.miranda@embl.de" . . . "mfo" . "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies"^^ . . . . "true"^^ . _:Nfecb86e96a3644afbdc7578fabbbb804 "Rafael Gonçalves" . "empty" . . . . . "^M\\d{4}$"^^ . . "dcat" . "metadata" . "SpliceNest" . . "health" . . "nfdi4ing" . . . . . . "false"^^ . "http://localhost/plosthes.2017-1#$1"^^ . "http://www.ontologyrepository.com/CommonCoreOntologies/"^^ . "cp390@cam.ac.uk" . "Fungal Growth Database" . . . "false"^^ . . "343"^^ . "A database-specific registry supporting curation in the Gene Ontology"^^ . . . . "miRNEST" . . . "pathway" . . "hogenom" . . . . . "pathway" . "Adnan Malik" . . "cell/organelle" . . . "NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)"^^ . "expression" . . "ctgov" . . "environment" . . "This ontology describes system capabilities, operating ranges, and survival ranges. Please report any errors to the W3C Spatial Data on the Web Working Group via the SDW WG Public List public-sdw-wg@w3.org"^^ . "fid baudigital" . "http://gov.genealogy.net/ontology.owl#$1"^^ . . "false"^^ . . . "representation mathematics function" . "https://data.4dnucleome.org/experiment-set-replicates/$1"^^ . "Proteomics Identification Database Ontology" . . . . . "3517823"^^ . _:N5ecae7ebf543492ca6fbc6f577ae5ece "Steve Baskauf" . "nfdi4energy" . . "0007807"^^ . "eukaryota" . . . . . "proteomicsdb.protein" . . . "licebase" . . "neurovault.image" . . "408"^^ . . "nlx.sub" . . . . "okn.sd" . . . . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID="^^ . . "false"^^ . . . "Solid OpenID Connect vocabulary" . "glasner@svm.vetmed.wisc.edu" . "http://modelseed.org/biochem/reactions/"^^ . . . "true"^^ . "clustering" . . "Mark Jensen" . "A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants."^^ . "http://sweetontology.net/propSpeed/$1"^^ . . . "An issue on the MONDO GitHub issue tracker"^^ . . . "^CNP\\d{7}(\\.\\d+)?$"^^ . "https://mardi4nfdi.de/mathalgodb/0.1#"^^ . "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID="^^ . . . . . "resource metadata" . . . . . . "PRINTS" . . "materials" . "pactr" . . . "genomics" . . . "protein" . _:N103732f962d342e5b3189cca26ebb029 "nospam@iandavis.com" . . "http://bigg.ucsd.edu/models/universal/metabolites/"^^ . . . "violinID" . "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs."^^ . "PLOS Thesaurus" . . _:N040a397889f74f62be98b5d1da35be64 "marc@geonames.org" . "false"^^ . . . . . . "http://uri.neuinfo.org/nif/nifstd/oen_"^^ . "region" . . . "fao" . . . . . . . "gtr.lab" . . "IP" . . "^4DN[A-Z]{2}[A-Z0-9]{7}$"^^ . "0000012b-5661-2f63-2f73-b43980000000"^^ . "taxonomy" . . . . . "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1"^^ . . "pathogen" . "bko" . "MaizeGDB Locus" . "false"^^ . . . . . . . . . . . . . . . . . "mieg@ncbi.nlm.nih.gov" . "false"^^ . . "structure" . . . . "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T"^^ . . "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1"^^ . "http://purl.obolibrary.org/obo/INO_"^^ . . . . . . . . . "http://homosaurus.org/terms/$1"^^ . . "Taconic Biosciences" . "ontology" . "http://purl.obolibrary.org/obo/DDANAT_$1"^^ . "gene" . "Li7"^^ . "The Audience Types Controlled Vocabulary was created for NSF's EarthCube program's Resource Registry. The vocabulary defines the types of audience each resource in the program is targeted to. At this point the vocabulary is very bare - no term definitions even; however, the intention is to extend the vocabulary over time. If you would like to assist with this or in extending any of the other controlled vocabularies/ontologies developed as part of the Resource Registry project, please see https://github.com/earthcubearchitecture-ecresourcereg."^^ . "https://www.langual.org/langual_thesaurus.asp?termid=$1"^^ . . . . . . . "^[0-9]+\\.[0-9]+$"^^ . . . "Reactions in drugbank"^^ . "false"^^ . "sweet.hur" . . . "materials" . . "dna" . . . . . . "pathways" . . . "j.huerta@csic.es" . "00000003"^^ . "International Classifications of Diseases" . "https://www.swisslipids.org/#/entity/SLM:"^^ . "ontology" . . . "false"^^ . "false"^^ . "obcs" . "life science" . . "genetic variation" . "Biofactoid" . . "identifier of a document in ChemRxiv, a preprint server for the chemical sciences launched in 2016"^^ . "https://absd.pasteur.cloud/antibody/"^^ . "bioresource" . . . . "https://data.oncomx.org/OMX_"^^ . . . . "ontology" . . "false"^^ . "agriculture" . . "https://www.e-cyanobacterium.org/bcs/entity/"^^ . "omim" . "CCDS12976"^^ . . "https://arxiv.org/abs/$1"^^ . "83088"^^ . . . "http://sweetontology.net/stateSolid/$1"^^ . . . . "https://w3id.org/polymat/"^^ . . . . . . . . . "mouse" . . . "molecular interaction" . "SWEET Ontology Material Rock" . . . . "Feature Annotation Location Description Ontology" . . . "false"^^ . . "^\\d+$"^^ . . . "European Nucleotide Archive" . . . "https://eol.org/pages/"^^ . "Orphanet" . . . . . . . . . . "5046"^^ . "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences."^^ . . . "euroscivoc" . . . . . "MIPF0000002"^^ . "Colin Groom" . "false"^^ . . . "ontoavida" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Protected"^^ . . . "open educational resources" . "sophhy" . . "false"^^ . "ontology" . . "nfdi4chem" . "false"^^ . . . "^C\\d{4}$"^^ . . "http://sweetontology.net/reprSciMethodology/$1"^^ . "https://www.pirbright.ac.uk/node/"^^ . "false"^^ . "portal" . "nfdi4ing" . "datacite.contributor" . . . "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1"^^ . "identifier for a publication in the International Plant Names Index"^^ . "Daniel.Kahn@toulouse.inra.fr" . "false"^^ . "http://sweetontology.net/realmLandAeolian/"^^ . "http://www.w3.org/ns/activitystreams#$1"^^ . "graingenes.reference" . "anja.gerber@klassik-stiftung.de" . . . "^\\d{7}$"^^ . "AseismicRidge"^^ . "https://www.ebi.ac.uk/metabolights/"^^ . "grsdb" . . . "nfdi4ing" . . "false"^^ . . . . . . . "103"^^ . . . . . . . "mutation" . . . . "Foods in FooDB"^^ . "molecular interaction" . _:N5c1ccea86ca04cd5a9adddb75b98d3a8 "jaiswalp@science.oregonstate.edu" . "protein" . . . "ontology" . . . . . . . "analytical chemistry" . "Contains information about cells and data sheets related to transfection."^^ . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Health Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Health Consortium members appropriate for maintaining this collection." . "model" . . "https://civicdb.org/links/sources/$1"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Transportation"^^ . "https://fanta.bio/cre/$1"^^ . "Battery"^^ . "http://sweetontology.net/matrRockIgneous/$1"^^ . "snp500cancer" . "Prefixes for ontologies relevant for the NFDI4Energy" . . "http://www.w3.org/2003/01/geo/wgs84_pos#$1"^^ . . . "https://vocabularies.cessda.eu/vocabulary/GeneralDataFormat?lang=en#code_$1"^^ . "The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)"^^ . "199/2168"^^ . . "authority" . . . "EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823"^^ . "energy" . . . "Lindsay Cowell" . "nfdi4chem" . . . . . "http://purl.org/ontology/rec/core#"^^ . "^[A-Za-z0-9]+$"^^ . . "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources."^^ . "family and domain databases" . . . . . "http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1"^^ . "Homology-derived Secondary Structures of Proteins Database" . . . . . "s4mari" . . "subject agnostic" . . . . . . . . "https://pharmacome.github.io/conso/"^^ . . . . . . . . "mechanical engineering, energy technology" . . . . . . . . . "https://biosimulators.org/simulators/"^^ . "^\\d+$"^^ . . . "MicrobeamManipulation"^^ . . . "ontology" . . . "human" . "^\\d+$"^^ . . "Japan Collection of Microorganisms" . "protein" . "small molecule" . "image/movie" . "neuroscience" . "Q9UKQ2"^^ . . . . . "false"^^ . "^\\d{6}$"^^ . "https://rism.online/"^^ . . . "bioportal.pae" . . "UniCarb-DB stores structural and mass spectrometry (MS) glycomic data, and has now grown to be one of the largest experimental glycomic MS databases. Identifiers correspond to individual glycan structures and corresponding MS spectra."^^ . . "repository" . . . . . "skos" . . . "^\\d{7}$"^^ . . "Integbio" . "AbsoluteVorticity"^^ . . . "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease."^^ . "rna" . . "false"^^ . . "SWEET Ontology Phenomena System Complexity" . "A_24_P98555"^^ . . "gene" . . "ontology" . . . "sweet.phatmo" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Biomass"^^ . . . "ChemicalCompound"^^ . . . . "Pier Luigi Buttigieg" . "materials science" . "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network."^^ . "false"^^ . "https://cropontology.org/rdf/CO_359:$1"^^ . "biozil" . "sweet.stti" . . . "http://www.gramene.org/db/protein/protein_search?protein_id=$1"^^ . . . "ontology" . . . "sweet.mapl" . . "https://cells.ebisc.org/$1"^^ . "small molecule" . "mwitt@purdue.edu" . . "ontology" . . . . "Rat Genome Database qTL" . "phenotype" . "false"^^ . . . "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation."^^ . . . "Adrian Gschwend" . "expression" . "This ontology extends the SAREF ontology for the Smart Lifts domain."^^ . . "obo" . "panet" . "http://sweetontology.net/propCapacity/$1"^^ . "^\\d+$"^^ . . "history" . . . "https://www.metanetx.org/comp_info/$1"^^ . "https://vocabularies.cessda.eu/vocabulary/TypeOfConceptGroup?lang=en#code_"^^ . . . . . "ontology" . "https://biocomputeobject.org/BCO_$1"^^ . . . . "351"^^ . "ChEBI" . "false"^^ . "bibliography" . . "idoo" . "https://go.drugbank.com/salts/"^^ . . . "genome/gene" . . "educational resources" . "disease" . "geogeo" . . . . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts."^^ . "state space" . . . . "ontology" . . . . . . . "sao" . . . . . . . "^\\d+$"^^ . . . . . "Chinese Biological Abstracts" . "cgd7_230"^^ . . "false"^^ . . . "999"^^ . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1"^^ . "Coefficient"^^ . "clinical trials" . . . "377550"^^ . . . . . "Nathan Edwards" . . . . . "materials science" . . . . . "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms."^^ . "https://www.chemsynthesis.com/base/chemical-structure-$1.html"^^ . "^RF\\d{5}$"^^ . . "false"^^ . "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes."^^ . "Environmental conditions, treatments and exposures ontology" . "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds."^^ . "https://bioregistry.io/cubedb:"^^ . "http://sweetontology.net/phen/"^^ . . "interaction/pathway" . "BE0000048"^^ . . . "false"^^ . "https://vocabularies.cessda.eu/vocabulary/rexdatatype?lang=en#code_"^^ . . "lado" . "SAREF extension for Agriculture" . . "obo" . "emea" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm"^^ . . . . "https://biomodels.net/vocab/idot.rdf#$1"^^ . . . "dblp.publication" . . . . . . . "mediadive.ingredient" . . "gene set" . "structrual bioinformatics" . "https://www.metanetx.org/comp_info/"^^ . . "GlycoEpitope" . "https://mmp.sfb.uit.no/databases/mardb/#/records/"^^ . . "https://www.wikidata.org" . "ontology" . . "SNOMEDCT_US_2021_07_31" . "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results."^^ . . "RealmConfiguration"^^ . . . . "DataCite Ontology" . . . "subject agnostic" . . . "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB."^^ . "biomaterial" . "HGNC Gene Group" . . . . . . . "disease" . . "Rolf Krahl" . . "bioinformatics" . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the PUNCH4NFDI Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying PUNCH4NFDI Consortium members appropriate for maintaining this collection. PUNCH4NFDI is notable in that its sub-disciplines (e.g., astronomy, high energy physics, nuclear physics, etc.) have a large variety in data and metadata needs." . _:N4b84693348df461993b954b9ae2f5dfb . . . . _:N6942196a03a041a183f5e7fb6a563f0f "Natalie L Catlett" . "https://w3id.org/kim/isced-2013/$1"^^ . "health/disease" . "https://www.ncbi.nlm.nih.gov/gtr/conditions/$1"^^ . "mouse" . . "http://sweetontology.net/phenCryo/"^^ . . "nfdi4ing" . "SWEET Ontology Representation Mathematics Function Orthogonal" . . "ontology" . . . . . . . . "ontology" . "http://purl.allotrope.org/ontologies/role#AFRL_"^^ . "CNBG_0001"^^ . "http://sweetontology.net/stateTime/$1"^^ . . "The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources."^^ . . "obo" . "faseb list" . "ICEberg cis-integrative and mobilizable element" . "PSI-MOD Protein Modifications Ontology" . . "https://github.com/tibonto/educor#"^^ . "https://www.drugbank.ca/categories/"^^ . . . "http://sweetontology.net/phenHydro/$1"^^ . . . . . "http://purl.org/dcx/lrmi-vocabs/learningResourceType/$1"^^ . . "2c6s"^^ . "1801.012"^^ . "horsetelex" . "biobank" . . . "NFDI4Immuno Collection" . . . "dmendez@ebi.ac.uk" . . . "transcription factor binding site prediction" . "histology" . . "false"^^ . . "subject agnostic" . . . . "A vector graphic for an anatomical entity useful for biological and biomedical informatics applications."^^ . . . . . . "3d structure" . "https://go.drugbank.com/reactions/"^^ . . . "http://purl.unep.org/sdg/SDGIO_$1"^^ . "Ekaterina Chuprikova" . "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes."^^ . "assetConcepts"^^ . _:N41ec8930ff9a4e0492f5edf1ba88da72 "alimanfoo@googlemail.com" . . . "emmo" . "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_"^^ . . . "ontology" . . . . . . "miscellaneous" . . "https://vocabularies.cessda.eu/vocabulary/TimeMethod?lang=en#code_$1"^^ . "Ilene Karsch-Mizrachi" . "false"^^ . . "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId="^^ . . "https://geneontology.org/GO_REF/$1"^^ . "NASA Open Science Data Repository Experiment" . . . . . . . "LncBook" . "oers" . "The DogOnt ontology supports device/network independent description of houses, including both controllable and architectural elements."^^ . . . . . "ess" . . "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities."^^ . "cdna/est" . "234"^^ . "Daniel C. Berrios" . "jeetvora@email.gwu.edu" . "representation" . . . . "environmental material" . "mir" . "http://qudt.org/schema/qudt#"^^ . . . . . . "sequence" . . . "Alan Wood's Pesticides" . "AcidbaseChemistry"^^ . . "pathobiochemistry" . . "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id="^^ . . . . . . . . . "Hs635"^^ . . . "http://sweetontology.net/reprMathFunction/$1"^^ . . "developmental biology" . "0000198"^^ . "Datasets published by the Publications Office of the European Union"^^ . "https://www.wormbase.org/species/c_elegans/rnai/"^^ . "method" . "drug interaction" . . "Europe PMC Preprints" . . . "An ontology of the Retail Energy Market of Great Britain created by Lidcast Data Limited."^^ . "Cell line collections (Providers)"^^ . "ontology" . "https://purl.org/vimmp/osmo#"^^ . "https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/"^^ . "https://w3id.org/APTO/"^^ . "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+"^^ . "false"^^ . . "https://gpo.ontology.link/GPO_"^^ . . . "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1"^^ . "microbe-host interaction phenotype" . . . . "psi-mi" . . "apetrov@ebi.ac.uk" . "ontology" . . . "^\\d+$"^^ . . . . . . "structure" . "cellosaurus.resource" . . . "https://bioregistry.io/reo:"^^ . . "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information. This entry represents UniProt mnemonics which combine an alphanumeric representation the protein name and a species identification code representing the biological source of the protein."^^ . . . . "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\n\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."^^ . "gmd.ref" . "https://www.merckmillipore.com/catalogue/item/$1"^^ . "PharmGKB Disease" . . "chemfont.chemical" . "protein" . "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects."^^ . . "gtr.condition" . . "ISRCTN10175490"^^ . . . "0002066"^^ . "AddressBook"^^ . . "robert.thacker@stonybrook.edu" . "tsrna" . . . . . . . . "cryopreserved" . "http://sweetontology.net/stateVisibility/"^^ . "r.shrestha2@cgiar.org" . "physics" . "Kerafast cell lines" . . . . "https://cropontology.org/rdf/CO_323:$1"^^ . "CHEBI" . . "hhe@ebi.ac.uk" . "research" . . . "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl."^^ . "false"^^ . . "ontology" . "gesis.thesoz" . . "sweet.propfu" . "classification" . "molecule" . "false"^^ . "infection process" . . . "ClinGen Allele Registry" . "vuid" . . "smpdb" . . "Repository of packages for the R programming language"^^ . . . . "0000001"^^ . . . "genetic variation" . "https://bioregistry.io/metaregistry/ncbi/$1"^^ . . . . . "false"^^ . "https://www.uniprot.org/proteomes/$1"^^ . . . "http://dictybase.org/gene/$1"^^ . "fairsharing.user" . . "^([a-zA-Z]+-)?\\d+(\\.\\d)?$"^^ . . . "small molecule" . . "cell_model_passport" . . . . . "protein" . "hivreagentprogram" . "genetic engineering" . . . . . "sweet.phb" . "Identifiers represent experimental tools and resources for neurofibromatosis (NF) research in the NF Data Portal Tools catalog."^^ . . . . . . . . . . "ontology" . . . "MARC List for Languages provides three-character lowercase alphabetic strings that serve as the identifiers of languages and language groups. The codes are usually based on the first three letters of the English form or, in some cases, vernacular form of the corresponding language name. The codes are varied where necessary to resolve conflicts and are not intended to be abbreviations of a language name. When the name of a language is changed in the list, the original code is generally retained. The codes in this list are equivalent to those of ISO 639-2 (Bibliographic) codes and some codes from ISO 639-5, although the language name labels may differ. They are linked to the equivalent codes in ISO 639-2 and ISO 639-5 and the corresponding two-character codes in ISO 639-1. The list contains over 480 discrete codes. It is also searchable at: MARC Code List for Languages."^^ . . "PaxDb Protein" . . . "cordis.article" . . . . "African Population Ontology" . . "dogont" . "creativebiolabs.protein" . . . . "The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2)."^^ . "gexo" . "rsk00410"^^ . "ontology" . . . "mirbase.mature" . . . . . . "digital planning and construction" . "Semion author" . "https://bioregistry.io/chemspider:"^^ . "^\\d{8}$"^^ . . . "https://omia.org/phene/omia:"^^ . . . . . "nstd102"^^ . "https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/$1"^^ . "medgen.cid" . "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible."^^ . "resid" . . . . "Comprehensive reference information for the world's languages, especially the lesser known languages. [from homepage]"^^ . "^\\d+$"^^ . "239287"^^ . . . "OMA HOGs" . . "true"^^ . "gene" . . . "economics" . "^\\d+$"^^ . "This is the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). This complete module imports all PRIMA modules (core, data-analysis-lifecycle, dataset, experiment, and computational) in their v3.0 versions. [from https://purls.helmholtz-metadaten.de/prima/complete]"^^ . . . "http://purl.obolibrary.org/obo/PDRO_"^^ . . . . "abm" . "http://purl.obolibrary.org/obo/CHMO_"^^ . . . "sweet.reps" . "chemical" . "The Austrian Fields of Science and Technology Classification (ÖFOS 2012) is the Austrian version of the revised international Fields of Science and Technology Classification of the OECD (FOS) published in the Frascati Manual 2015 as Fields of Research and Development (FORD). These fields are adjusted to national needs, whose application for international comparisons is binding, particularly within the European Statistical System. The six major Fields of Science: Natural Sciences; Technical Sciences; Human Medicine, Health Sciences; Agricultural Sciences, Veterinary Medicine; Social Sciences and Humanities remained unchanged in comparison to ÖFOS 2002. In order to ensure international comparability, the previous 2-digit levels from 2002, which are no longer applicable, were replaced by new 3-digit levels (groups) according to the international FOS respectively FORD. These 3-digit levels were provided with further sub-groups (4-digits) taking into account the comments of the international classification. It is therefore feasible that the new Austrian Fields of Science adapt to national peculiarities of the Austrian research activities. The research area with the corresponding 6-digits in alphabetical order serves as a description of the fields of activities and research projects and/or for the coverage of the main scientific activities of a statistical unit in the research and development surveys. (Current revision status: August 2017)"^^ . . "http://uri.neuinfo.org/nif/nifstd/nifext_"^^ . . "SNOMEDCT_2005_07_31" . "^S\\d+$"^^ . . . "^SEQF\\d+(?:\\.\\d+)?$"^^ . . "andrea.perego@jrc.ec.europa.eu" . . . "Snapshot" . . "model" . "Algorithm Metadata Vocabulary is a vocabulary for capturing and storing the metadata about the algorithms (a procedure or a set of rules that is followed step-by-step to solve a problem, especially by a computer). There are uncountable algorithms present in every area (e.g., Computer Science, Mathematics), which makes it hard for specialists, academicians, application engineers, and so forth to discover, distinguish, select, and reuse them. [from repository]"^^ . "version control" . . . . . . . "https://athena.ohdsi.org/search-terms/terms/$1"^^ . "false"^^ . . . "Gramene Reference" . . . "envo" . . "https://dialnet.unirioja.es/servlet/revista?codigo=$1"^^ . . . . . "^\\d+$"^^ . . . "bioresource" . "true"^^ . "https://saref.etsi.org/saref4lift/$1"^^ . . . . . . "https://bioregistry.io/pseudogene:"^^ . . . "ontology" . "oboinowl" . "bibliometrics" . . . "ontology" . "http://research.bmh.manchester.ac.uk/informall/allergenic-food/?FoodId=$1"^^ . "https://signor.uniroma2.it/relation_result.php?id="^^ . "biomedical science" . . "false"^^ . "NLXSUB" . "The InformAll database was developed to provide a credible source of information on allergenic food materials of both plant and animal origin."^^ . . "http://bimerr.iot.linkeddata.es/def/building#"^^ . "Terminology of Anatomy of Human Histology" . . . "ontology" . . . "128796-39-4"^^ . . . "^\\d+$"^^ . "Developing Mouse Brain Atlas" . . . . . . "mibig" . . . "3d structure" . "http://purl.obolibrary.org/obo/HAO_"^^ . "^[0-9a-f\\-]+$"^^ . . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4DataScience Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/)." . . "^PMH\\d{7}$"^^ . . "Genomic Data Commons Data Portal" . . . . "animal" . "Minerva María Romero Pérez" . "elspeth@genenames.org" . "tair.gene" . . . . "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."^^ . "Cu.me.I1"^^ . . . "false"^^ . . "dna" . "http://data.europa.eu/8mn/euroscivoc/"^^ . . . . . . "uniparc" . . "Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain."^^ . . . . . "http://xmlns.com/wot/0.1/$1"^^ . "11002"^^ . . "Basic Register of Thesauri, Ontologies & Classifications" . . . . _:N47e9013dc6e94f5cb2d263d315456f2b "whocc@fhi.no" . . . . "pgs" . "pathogen" . . . . . . . "0000001"^^ . . "Computer Retrieval of Information on Science Projects Thesaurus" . "https://omim.org/MIM:PS$1"^^ . . . "chemistry" . . "ncbidrs" . "http://www.purl.org/dabgeo/conceptual/energymarketroles#$1"^^ . . . "https://uniresolver.io/#did:$1"^^ . "uniprot.keyword" . . . "roberts@neb.com" . "https://guolab.wchscu.cn/AnimalTFDB4//#/family_summary/TF/"^^ . "chemical structure" . . . "https://www.ncbi.nlm.nih.gov/gene/$1"^^ . . "Bacterial Tyrosine Kinase Database" . . . . "gold.meta" . . . . . "sequence" . "repository" . . . . "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families."^^ . "3d structure" . . "cell/organelle" . "Michael Witt" . "adolphok@vcu.edu" . "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more."^^ . . . . "fyeco" . . . . "publication" . . . . . . . . "Clement Jonquet" . . "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_$1"^^ . "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1"^^ . "classification" . . . . _:Nb9eb8844d07c489a8ef86cee3f84a57d "Intellectual.PropertyServices@ama-assn.org" . "cancer" . . . "https://ontome.net/profile/"^^ . . "false"^^ . . . . . "Alison Booth" . . "^[0-9a-fA-F]{32}$"^^ . . "scoro" . . "ncrna" . "Conrad L Schoch" . "1000000"^^ . "http://iirds.tekom.de/iirds/domain/machinery#"^^ . "saref.wearable" . . "gene expression" . . "materials" . . . . "life science" . . . . . . "Minimum Information about a Biosynthetic Gene Cluster data repository" . . . . "https://vocabularies.cessda.eu/vocabulary/TypeOfInstrument?lang=en#code_"^^ . "0000106"^^ . "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"^^ . . . "false"^^ . . . . . . . . "Information Artifact Ontology Issue Tracker" . "41455251.1"^^ . . . "https://search.clinicalgenome.org/CCID:$1"^^ . . . "A collection of ontologies, controlled vocabularies, and schemas relevant for engineering and the [NFDI4Ing Consortium](https://nfdi4ing.de). Ontologies are chronologically imported from the corresponding [TIB Terminology Service collection](https://service.tib.eu/terminology/collections/nfdi4ing)." . . . "^CAL\\d{7}$"^^ . . . . "false"^^ . . "CL0192"^^ . "rrrc" . "^[0-9a-z-]+$"^^ . . . "cell/organelle" . . "disorders" . . "genetics" . "Der Thesaurus enthält Vokabular zu allen ökonomischen Themenstellungen: über 6.000 Schlagwörter und über 28.000 zusätzliche Synonyme als Zugangshilfe, um individuelle Formulierungen bei der Suche aufzufangen. Auch Fachbegriffe aus benachbarten Bereichen wie z.B. Recht, Soziologie oder Politik sowie Geobegriffe sind dort zu finden. Wenn Sie Schlagwörter aus diesem Vokabular auswählen, können Sie sicher sein Treffer zu erhalten, die zu dem gewünschten Sachgebiet passen. [from homepage]"^^ . . "MMP743597.11"^^ . "chemistry databases" . . . "https://publons.com/publon/$1"^^ . . "Dictyostelium discoideum anatomy" . . . . "system" . "MMSL_CODE" . "dorothea.iglezakis@ub.uni-stuttgart.de" . . . "Zebrafish anatomy and development ontology" . "Uniprot Core Ontology" . . . . "0000141"^^ . "fid move" . . . . . . . "Babelon" . . . . . "digital planning and construction" . "domain" . . . . . . . "false"^^ . "MI0026471"^^ . . . . . . "difference" . "tabea.tietz@fiz-karlsruhe.de" . . "0100002"^^ . "Stemcell Knowledge and Information Portal" . "bindingdb" . "dataplant" . "IID00001"^^ . . . "true"^^ . . . . . . . . . "1058367"^^ . . "http://www.w3.org/2003/06/sw-vocab-status/ns#$1"^^ . . . "Giacomo Lanza" . . "health science" . . . . "false"^^ . "http://uri.neuinfo.org/nif/nifstd/$1"^^ . "false"^^ . . "rna" . "^PTHR\\d{5}(\\:SF\\d{1,3})?$"^^ . . "human" . "jrc-eurl-ecvam-chemagora"^^ . . "cienciavitae" . . . . . . . "organism-specific databases" . . "CIViC Assertion" . . "^[0-9a-zA-Z\\.\\-\\_]+$"^^ . "AlternateAssessment"^^ . . . "Protocol for Web Description Resources (POWDER) Schema" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Control"^^ . . . . . . "Ontology for Biomedical Investigations" . . "database" . "http://sweetontology.net/phenAtmoSky/"^^ . . . "wormbase" . . "Unified Medical Language System Atomic Unique Identifier" . . . . . . . . . . "http://vocab.getty.edu/ulan/$1"^^ . . . "sophw" . . . "BinaryProperty"^^ . "Database of Complete Genome Homologous Genes Families" . "mirna" . "false"^^ . . . "https://biopragmatics.github.io/providers/schem/"^^ . . . _:N8b5e9c9685c049a78900077a1a4f8786 "Albert Goldfain" . "GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections."^^ . _:N24a76731a741487abd39bca4babc638b "Qiong Gu" . . . . . . . . . . "recombinase" . . . "sasbdb" . . . "Human Metabolome Database" . "Event"^^ . "false"^^ . "Identifiers for chemicals used as solvents in SupraBank"^^ . . . "System Package Data Exchange" . . . "Code Ontology" . . . . . . . "false"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Region"^^ . . . . . . "0011124"^^ . "^\\d+$"^^ . . "registry" . "biomedical science" . . "molecule" . . . "0001003"^^ . . . "chemical and environmental engineering" . . . . "sdgio" . "true"^^ . . . . . . . "https://www.w3.org/2019/wot/security#$1"^^ . "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity."^^ . "false"^^ . . . "https://www.cancerimagingarchive.net/collection/$1"^^ . "https://saref.etsi.org/saref4grid/"^^ . "https://cropontology.org/rdf/CO_325:$1"^^ . "https://civicdb.org/links/gene/"^^ . "http://purl.obolibrary.org/obo/TADS_"^^ . "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$1"^^ . . . . "https://www.encodeproject.org/$1"^^ . . "phenotype" . "false"^^ . . "true"^^ . . . "Cultural Objects Names Authority" . . . "00000101"^^ . . . . . . . "sweet.rel" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Space"^^ . "^\\d{7}$"^^ . . "AmphibiaWeb Species ID" . . . "protein" . "false"^^ . . "eccode" . . "Protein Model Database" . "chembiosys.institution" . "http://purl.obolibrary.org/obo/BSPO_$1"^^ . "obo" . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id="^^ . "bridgedb" . . . . . "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets."^^ . "Air"^^ . . . "protein-protein interaction databases" . "https://pubchem.ncbi.nlm.nih.gov/bioassay/"^^ . . "false"^^ . . . . . "^\\d{7}$"^^ . . . "false"^^ . . "protein" . . . . "false"^^ . . . . . . "allele" . "Biological Magnetic Resonance Data Bank" . . "RiceNetDB Gene" . . . . . . . . "An ontology encoding software based on the Intelligent Information Request and Delivery (iiRDS) standard"^^ . "morphology" . "https://database.factgrid.de/viewer/item/"^^ . . . . "http://purl.obolibrary.org/obo/COVIDO_$1"^^ . . . "https://www.epos-eu.org/epos-dcat-ap#"^^ . . "coss@cnb.csic.es" . . "false"^^ . "iconclass" . . . . . . . . . "3"^^ . . "http://purl.obolibrary.org/obo/MICRO_"^^ . . . "space height" . _:N3f0859c4372941b1bedda0c6f2842a77 "Usha Mahadevan" . . . . . "study design" . . "activityBoundOf"^^ . . . "sequence" . . "genome/gene" . . "cdna/est" . "SWEET Ontology State Thermodynamic" . . . "false"^^ . "gene function" . . . "biomedical science" . . "rdf" . . . . . . . "mpio" . . "The Maize Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . . "https://ngdc.cncb.ac.cn/genbase/search/gb/$1"^^ . . . . . . . "37af84f2-bfd7-4653-b608-eaff44febba6"^^ . "nfdi4cat" . . . "nanoparticle" . . . "false"^^ . "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions."^^ . "OER Schema" . "functional magnetic resonance imaging" . . . "Creative Commons Schema" . . "health/disease" . "918902"^^ . "preclinical studies" . "https://w3id.org/kim/educationalLevel/level_"^^ . . "false"^^ . "iofcore" . . . "ontology" . "Networks in DEIMS SDR"^^ . "geonames" . . . "trichdb" . "caps" . . "^\\d{7}$"^^ . . "US4145692"^^ . "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution."^^ . . . . "bioinformatics" . . "https://www.zobodat.at/personen.php?id=$1"^^ . "biotop" . . . "http://www.cathdb.info/domain/$1"^^ . _:Nf6ab89ac4b1240da95c3912895da4d57 "Michael J. Adams" . "Human Brain Atlas" . "Feng Zhu" . . . . . . . "00030692-0FE1-4A1B-955E-A2E55D659267"^^ . . . . . . . "EasyChair Topic" . . . . . "https://www.gtexportal.org/home/gene/$1"^^ . . . . . . "false"^^ . . . . "0000000"^^ . "Austrian Fields of Science and Technology Classification" . . . "organism" . "representation data service reduction" . "https://lincs.hms.harvard.edu/db/antibodies/"^^ . . . . . . "false"^^ . "gene" . . . "fid baudigital" . "Ascomycete phenotype ontology" . "BioModels Database" . . . . . "https://www.ebi.ac.uk/ols4/ontologies/$1" . . . "Intrinsically Disordered Proteins Ontology" . . "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology."^^ . . "centrally registered identifier" . "^\\d{7}$"^^ . "chris@gigasciencejournal.com" . "https://www.datascienceontology.org/concept/$1"^^ . _:N1561db16031543ee8334355d10be20b2 "cs@firstdatabank.com" . "https://scholar.google.com/citations?user=$1"^^ . . . . "03212fd7_abfd_4828_9c8e_62c293052d4b"^^ . "https://www.ebi.ac.uk/metagenomics/projects/"^^ . . "Crop Ontology Curation Tool" . "flymine.chromosome" . "small molecule" . . "cho"^^ . . . . "A001094"^^ . . "Quaternary Structural Proteome Repository" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time Frequency"^^ . "Invasion Biology Ontology" . "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id="^^ . . . "false"^^ . "^[A-Z]{6}(\\d{2})?$"^^ . . "antibody" . . . . "ontology" . . "^\\d{7}$"^^ . . . . . . . . . . "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$"^^ . . "image" . "license" . "https://www.chictr.org.cn/searchproj.html?title=&officialname=&subjectid=®status=®no=$1&secondaryid=&applier=&studyleader=&createyear=&sponsor=&secsponsor=&sourceofspends=&studyailment=&studyailmentcode=&studytype=&studystage=&studydesign=&recruitmentstatus=&gender=&agreetosign=&measure=&country=&province=&city=&institution=&institutionlevel=&intercode=ðicalcommitteesanction=&whetherpublic=&minstudyexecutetime=&maxstudyexecutetime=&btngo=btn"^^ . . "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-"^^ . . . . "life cycle stage" . . . . "Spectral Database for Organic Compounds" . . . . . . "vertebrate" . . "https://bioregistry.io/polbase:"^^ . . "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1"^^ . . "cell/organelle" . "1a24"^^ . . . "provenance" . "http://118.178.132.53/tsRNADisease/detail.php?entry_ID=$1"^^ . "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID="^^ . . . "http://purl.obolibrary.org/obo/APOLLO_SV_"^^ . "gfbio.iho" . "HMS LINCS Compound" . "repository" . . . "false"^^ . "plant phenotypes and traits" . . "http://purl.obolibrary.org/obo/TRANS_$1"^^ . "SWEET Ontology Property Dimensionless Ratio" . . . "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"^^ . . . . "Infectious Disease Ontology" . . "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id="^^ . . . . "hadi.quesneville@versailles.inra.fr" . . "The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to entries in the ChemFOnt ontology that are used to organize individual chemicals. Terms can be looked up using the following URL (https://www.chemfont.ca/ontology_browse/term_info/18), but not directly by ID"^^ . . . . . "meghan.balk@gmail.com" . . "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data."^^ . "Selventa Diseases" . . . . . . . "OMA Group" . "Feature Type Thesaurus" . "genome" . "TDR" . "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry."^^ . . . "http://purl.org/heritagedata/schemes/eh_tbm/concepts/$1"^^ . . "sweet.real" . . "nfdi4ing" . . "https://www.cancerrxgene.org/translation/Drug/$1"^^ . "f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a"^^ . . . "^\\d{8}$"^^ . . . . . . . . . _:N5eae87da254e42a598e3a2e47c98e489 "futo@stanford.edu" . . . . "SWEET Ontology Phenomena Atmosphere Sky" . . "false"^^ . . . "https://raras.org/class/$1"^^ . "DSSTox_Generic_SID" . . . "https://www.alliancegenome.org/accession/"^^ . "Imanis Life Sciences cell line products" . . "false"^^ . "ontology" . . "^\\d+$"^^ . . . . "https://www.kegg.jp/pathway/$1"^^ . "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:"^^ . . "ac" . . . . . "image/movie" . "health/disease" . "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . . "^[0-9]{6}$"^^ . "eclas" . "Identifiers represent experimental growth profiles documenting fungal species' ability to utilize specific carbon sources (plant biomass components, polysaccharides, and monosaccharides) in the FUNG-GROWTH database, which provides phenotypic data to support functional genome annotation and comparative analysis of carbohydrate metabolism across fungal species."^^ . . "VB.Ob.3736.GRSM125"^^ . . . . . "http://zbw.eu/stw/thsys/"^^ . "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$1"^^ . . . "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1"^^ . "r.huntley@ucl.ac.uk" . . "https://bmrb.io/data_library/summary/index.php?bmrbId=$1"^^ . . . "^\\d{7}$"^^ . . . "ontology" . "AOPWiki (Key Event Relationship)" . . . "genome" . . . . "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster."^^ . . "plant anatomy" . "International Standard Serial Number" . . . . . "https://bioregistry.io/schema/#$1"^^ . . "Justin Whorton" . "Ugis Sarkans" . . "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23"^^ . "trans" . "one" . . "^\\d+$"^^ . . . "iot" . . . . . . . . "genome" . . . . . . "http://terminologies.gfbio.org/terms/BOHLMANN/"^^ . "The Integrated Chemical Environment (ICE) provides high-quality curated data and appropriate tools to support development and evaluation of new, revised, and alternative methods. ICE provides free online access to curated in vivo and in vitro test data, in silico toxicity predictions and chemical property data, reference chemical lists, and computational tools for chemical characterization and predicting toxicity.\nICE supports the following: (i) Data integration: brings together available data, including data on formulations; (ii) Results exploration: enables dynamic, graphical exploration with publication-quality graphics; (iii) Data analysis: allows characterization of data using online workflows, and (iv) FAIR data access: data are findable, accessible, interoperable, and reusable."^^ . "https://cropontology.org/rdf/CO_358:"^^ . . . "fish.bm" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Pressure"^^ . "http://top-thesaurus.org/trait#"^^ . . . . "Arrow"^^ . . "https://morpheus.gitlab.io/models/"^^ . "gwascentral.marker" . . "scop.sid" . . . . . . . . "ontology" . . "^\\d+$"^^ . . . "subject agnostic" . "S000002493"^^ . "Jianjiong Gao" . "false"^^ . "expression" . "georgeta.bordea@u-bordeaux.fr" . "sdy998"^^ . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions."^^ . "Social Science Research Network Author" . . . . "go.resource" . . . . "obo" . "somac" . . . "protein" . . . "Diseases Database" . . "https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno="^^ . "isReferencedByPolicy"^^ . . "false"^^ . . "0000288"^^ . "reaction data" . . . . "nfdi4ing" . "An ontology for glycans based on GlyTouCan, but organized by subsumption."^^ . . "NIF Cell" . "http://purl.obolibrary.org/obo/GEO_$1"^^ . . . "false"^^ . "http://www.gramene.org/db/genes/search_gene?acc=$1"^^ . "^DG\\d+$"^^ . . . . . . . . "protein" . . . . . "qb" . "dataplant" . "false"^^ . . . . "clinicaltrials" . "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions."^^ . "http://www.xmetdb.org/xmetdb/protocol/"^^ . . . . "Mappings from SIOC to SWAN, with a small number of aux terms"^^ . . "^\\d+$"^^ . "^\\d+$"^^ . . "https://schema.coypu.org/vtf#$1"^^ . "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1"^^ . . "linkContext"^^ . . "https://vocabularies.cessda.eu/vocabulary/DateType?lang=en#code_"^^ . "10b38aaf-b977-4950-85b8-f4775f66658d"^^ . "genome" . . "expression" . "A unit of a vector graphic for an anatomical entity useful for biological and biomedical informatics applications."^^ . "project management" . . . "dna" . "DBSALT001211"^^ . "B10000000000_3"^^ . "microbes" . . "101775319"^^ . . . "^[A-Z]{2}\\d+$"^^ . "German classification of occupations" . "violinId" . . . "pid" . "^\\d{7}$"^^ . . . "expression" . . . . . "nfdi4chem" . . . . "MGTBind compound" . "nfdi4ing" . . "Earth System Sciences Collection" . . "sequence" . "protein" . . . . "https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_$1"^^ . . "1868"^^ . . . . . . "false"^^ . . . "identifier for a paper in Google Scholar"^^ . . . . . . . . . "0000000"^^ . "https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1"^^ . . . . "cognitive neuroscience" . . . "false"^^ . . . . . "ontology" . "false"^^ . "health science" . "HEX1"^^ . . "murine" . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records."^^ . "^[0-9]+(LR)?$"^^ . . "pgx" . "ontology" . . . "https://www.atcc.org/products/$1"^^ . "structure" . . "https://mirgenedb.org/browse?qtype=mgid&org=ALL&query="^^ . . . "health/disease" . "ogms" . . . . "false"^^ . "scopus" . . . "jfpei@pku.edu.cn" . . "anatomy" . "phenotype" . . . . . "anatomy" . "edennis@ucsd.edu" . . "false"^^ . . "UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries."^^ . . . . "false"^^ . . . "genomics" . . "nfdi4chem" . . . . _:N1f6c2b1b18b84a929d7be4c8bff73069 . . . . _:Nf043fceb57444f1ab4a4da3b8a4eb51b . . "euclinicaltrials" . "http://purl.obolibrary.org/obo/VIBSO_"^^ . "The Common Terminology Criteria for Adverse Events (CTCAE),[1] formerly called the Common Toxicity Criteria (CTC or NCI-CTC), are a set of criteria for the standardized classification of adverse effects of drugs used in cancer therapy. The CTCAE system is a product of the US National Cancer Institute (NCI)."^^ . "chemistry" . "metabolites" . "SWEET Ontology Realm Land Protected" . . . . "gx" . "^MMP\\d+.\\d+$"^^ . . . "frim1"^^ . . . . . "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes."^^ . . . . . . . "riboCIRC" . . . . "DrugBank Drug Category" . . . . . . . . . . "An instance of the EBI Lookup Service deployed by TIB"^^ . . . "Candida Genome Database" . "img.taxon" . . "fid move" . . . . "HasPart"^^ . "^\\d{6}$"^^ . . "cellular_component" . . . . . "false"^^ . . . "^TS-\\d{4}$"^^ . . "https://www.authorea.com/users/$1"^^ . . . . . "International Histocompatibility Workshop cell lines" . . . . . "https://saref.etsi.org/core/"^^ . "false"^^ . . . "findex.raum" . "false"^^ . . . "P3DB Protein" . . "https://www.ebi.ac.uk/complexportal/complex/$1"^^ . "nci.drug" . . . . . . "true"^^ . . "ontology" . . . . "https://biopragmatics.github.io/providers/cemo/$1"^^ . "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$"^^ . "http://sweetontology.net/stateRoleTrust/$1"^^ . . "ontology" . "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1"^^ . . . "PRIDE Project" . "false"^^ . "_3dmet" . . . . . . . . "CORDIS article" . . . "^EBI\\-[0-9]+$"^^ . _:N504c748bdcd34106a61bce4e8359b1fa . . "https://phinvads.cdc.gov/vads/ViewCodeSystemConcept.action?oid=2.16.840.1.113883.12.227&code=$1"^^ . "SWEET Ontology Material Organic Compound" . "http://sweetontology.net/repr/$1"^^ . . . . "sequence" . . . "https://dbpedia.org/ontology/$1"^^ . "Lindsey.Anderson@pnnl.gov" . "^\\d+$"^^ . . "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes."^^ . _:N17e3190f017e4daf91b89a075a25812e "mmartone@ucsd.edu" . "false"^^ . "MathModDB is a database of mathematical models developed by the Mathematical Research Data Initiative (MaRDI). MathModDB defines a data model with classes (Mathematical Model, Mathematical Formulation, Research Field, Research Problem, Quantity [Kind], Computational Task, Publication), object properties/relations, data properties and annotation properties as an ontology. This ontology is populated with individuals/data from various fields of applied mathematics, making it a knowledge graph. [from homepage]"^^ . "bcbc" . "https://portal.issn.org/resource/ISSN/"^^ . "dataplant" . . . . . . . . . . . "^\\d{8}$"^^ . . . "false"^^ . "^[0-9]{2}(-XX|-[0-9]{2}|[A-Z](xx|[0-9]{2}))$"^^ . . . "hc.npn" . . "http://sweetontology.net/propTemperature/"^^ . . . "patient care" . . . . "The China National Center for Bioinformation's (CNCB) Genome Warehouse (GWH) is a public repository holding genetic information for a wide range of species including humans, plants, animals, and microorganisms. Identifiers in this resource correspond to genomes of various species. The goal of the resource is to make genomic data accessible to researchers in areas like precision medicine and biotechnology."^^ . . . . "limore" . "life sciences, biology" . . "http://purl.obolibrary.org/obo/MPATH_$1"^^ . . . . "AD834"^^ . _:Nef54332c79024b928438efc56a6b2cb7 "Cynthia Hake" . "opmi" . "true"^^ . "si.prefixes" . . . . "false"^^ . "https://www.kegg.jp/brite/$1"^^ . . . "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets."^^ . "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications."^^ . "prediction" . . "image/movie" . . "computer science" . "packagist" . "biomodels.kisao" . . "coypu" . "phenomena" . . . . . "method" . . "artificial intelligence" . . "Functional annotations of genomes for studying gene regulation, with a primary focus on cis-regulatory elements (CREs) such as promoters and enhancers."^^ . . . . . . "false"^^ . "D0001"^^ . . . . "Malachi Griffith" . "false"^^ . "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/"^^ . "chromatin loop" . . . "nfdi4ing" . . . . . "UPPRO" . . "Bibliometric Data Ontology" . . . . "Age"^^ . . . "http://sweetontology.net/phenOceanCoastal/$1"^^ . . "peroxibase" . "ICD" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Configuration"^^ . . . "true"^^ . . "OrthoDB" . . "sweet.phatmopc" . "wos.researcher" . "https://mite.lisc.univie.ac.at/repository/$1"^^ . "FOOD00020"^^ . "false"^^ . "small molecule" . "ruth.duerr3@gmail.com" . . . . "Telethon Network of Genetic Biobanks" . . . . . "sweet.phatmol" . "kerafast" . . "https://protists.ensembl.org/id/"^^ . . . . "http://purl.obolibrary.org/obo/ERO_$1"^^ . "gemet.theme" . . "Microbial Conditions Ontology" . "hsa00190"^^ . . "http://sweetontology.net/repr/"^^ . . "mental health" . . . "false"^^ . . "http://rs.tdwg.org/ontology/voc/TaxonRank#$1"^^ . . . . . . . . . . "anatomy" . . "nlfff" . "aellenhicks@gmail.com" . . "galen" . . "The aim of lemon is to provide rich linguistic grounding for ontologies. Rich linguistic grounding includes the representation of morphological and syntactic properties of lexical entries as well as the syntax-semantics interface, i.e. the meaning of these lexical entries with respect to an ontology or vocabulary. [homepage]"^^ . . . . "https://bioregistry.io/pscdb:"^^ . "BioKC" . "false"^^ . "false"^^ . . . . . . "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)."^^ . "averageOver"^^ . . "false"^^ . "uminctr" . . . "orcid" . "Simple Knowledge Organization System" . . . "tag" . . . . "ATC_code" . . "false"^^ . "PDB ligand" . . . . . "materials" . . . . . . . . "protein-protein interaction databases" . . . . . . "http://purl.obolibrary.org/obo/COVOC_$1"^^ . "Dublin Core Elements (1.1)" . . . "0000780"^^ . . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4."^^ . . "classification" . . . "representation space coordinate" . . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/CharacterSet?lang=en#code_"^^ . "http://dbpedia.org/property/"^^ . . . . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology."^^ . . . . "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$"^^ . . "https://www.ipni.org/p/$1"^^ . "sael" . "Noemi Betancort Cabrera" . "disease phenotype" . . . . . "biology" . "https://pathbank.org/view/"^^ . . "interaction/pathway" . "nucleotide" . . "https://bioregistry.io/$1:$2" . "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1"^^ . "A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces."^^ . . . . . . "affy.probeset" . "SWEET Ontology Phenomena Atmosphere Lightning" . . "voaf" . "Andrew G. McArthur" . . . . . "ontology" . . "ac.variant" . "http://purl.obolibrary.org/obo/EMAPA_"^^ . "false"^^ . . "gendis" . . "A publication in the ChemBioSys data platform"^^ . . . "false"^^ . . . . . . . . . . . . "https://data.chembiosys.de/assays/"^^ . . . . . "protein" . . "^[A-Za-z_0-9]+$"^^ . . . . . . . . "^\\d{6}$"^^ . "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.)."^^ . _:N7dd62a66503d43df928f7b7aca831132 . . . . "The Building ontology has been developed to perform as the core module of the BIMERR Ontology Network, containing information related to building topology, and components. The model is constructed as an extention of the BOT ontology that provides the vocabulary to describe the topology of a building as well as the relationships between their main components such as zones, spaces, and building elements. The taxonomy of building components is based on the proposed by the IFC 4.1 standard."^^ . . . "Registry of programming languages for the Linguist program for detecting and highlighting programming languages."^^ . . . . "https://flybase.org/reports/$1"^^ . "measurement systems" . . "false"^^ . "PTPN1"^^ . . . . "https://physics.nist.gov/cgi-bin/cuu/Value?"^^ . "educational resource" . "geology" . "bibliography/documents" . . . "https://www.ebi.ac.uk/intact/search?query=$1"^^ . . "Harry E. Pence" . "abcd"^^ . "false"^^ . . "genome" . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information."^^ . "false"^^ . "academy" . "https://www.animalgenome.org/CorrDB/q/?id=CorrID:"^^ . . "false"^^ . . . "^A\\d+$"^^ . . "http://www.sasbdb.org/data/"^^ . "https://smid-db.org/smid/"^^ . . "100079"^^ . "https://omabrowser.org/oma/hog/HOG:"^^ . "engineering" . . . "https://data.oncomx.org/OMX_$1"^^ . "chembiosys.study" . "bf" . . "An EMMO-based domain ontology for atomistic and electronic modelling."^^ . . "ontology" . . . . "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process."^^ . . . . "drug name" . . "false"^^ . "life science" . "grddl" . . . . . "The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML."^^ . . . "https://biobank.ndph.ox.ac.uk/crystal/field.cgi?id="^^ . . . . . . "BeetleBase" . "open educational resource" . . "resource metadata" . "dataplant" . "http://purl.obolibrary.org/obo/FIX_$1"^^ . . . . . . "ontology" . . . "pathway" . . . "pathways" . "https://www.webofscience.com/wos/author/record/"^^ . . "90801"^^ . "^c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y$"^^ . . "false"^^ . . . "https://openalex.org/"^^ . . "false"^^ . . . "false"^^ . "http://ecoportal.lifewatch.eu" . . . . . "ontology" . . "chemical structure" . "drsanv0" . . . . "Types used in WikiPathways RDF"^^ . . . "https://go.drugbank.com/drugs/$1"^^ . "experiment" . . . "^[A-Z]{1,2}[0-9]+i?(_[A-Za-z_]+)?$"^^ . . . . . "http://pombe.oridb.org/details.php?id="^^ . "ndex" . . . "compound" . . . . "SWEET Ontology Material Compound" . "^AT.G[0-9]{5}$"^^ . "https://go.drugbank.com/bio_entities/"^^ . "ecosystem" . "sweet.repdsa" . . . . "Specifies the type of numeric data."^^ . . "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1"^^ . "Larisa Soldatova" . "microbiome" . . . "educational resources" . . . "The European Language Social Science Thesaurus (ELSST) is a broad-based, multilingual thesaurus for the social sciences. It is owned and published by the Consortium of European Social Science Data Archives (CESSDA) and its national Service Providers. The thesaurus consists of over 3,000 concepts and covers the core social science disciplines: politics, sociology, economics, education, law, crime, demography, health, employment, information and communication technology and, increasingly, environmental science. [from homepage]"^^ . . "obo" . _:N2ff4cc581db846b88b26a93b1127690c "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "image/movie" . . . . . . "metabolomics" . . . . . "Themes listed in GEMET"^^ . "https://www.cabi.org/cabebooks/ebook/$1"^^ . . . . . "lv" . "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA."^^ . "^\\d{7}$"^^ . "The Genetic Testing Registry provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease."^^ . . . "pharmacogenomics" . . . "PolyMat Ontology" . "http://purl.uniprot.org/core/"^^ . . . "agrovoc" . . "pancreatic islet function" . . . "Gert Vriend" . "false"^^ . "^\\d+$"^^ . . "gene" . . "dna" . . . "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information."^^ . . "entiminae@gmail.com" . "https://www.wwpdb.org/pdb?id=pdb_0000"^^ . . "engineering" . . "^\\d{4}\\-\\d{6}\\-\\d{2}$"^^ . "Mouse Developmental Anatomy Ontology with Theiler Stage" . . . . . . . . . "http://purl.obolibrary.org/obo/TTO_$1"^^ . . . . "phenomena" . "human" . "The EVORAO Ontology provides a structured and harmonized vocabulary for describing shareable pathogens as characterized biological materials, along with their derived products and associated services, organized into collections. Developed within the EVORA project, it supports consistent metadata annotation across research infrastructures, promoting findability, accessibility, interoperability, and reusability (FAIR). By aligning with relevant standards and ontologies, EVORAO facilitates cross-domain collaboration, integration, and sharing of pathogenic resources and services to enhance pandemic preparedness and response. While initially focused on virology, EVORAO is designed to be extensible and also supports metadata harmonization for other pathogens. [from repository]"^^ . . . . . . . . "http://sweetontology.net/reprMathFunction/"^^ . "Uber-anatomy ontology" . "materials" . . . "^\\d+$"^^ . . . "annotatesResource"^^ . . . "3"^^ . "^\\d+$"^^ . . . . "nmrXiv sample" . . "false"^^ . . "https://doulix.com/biomodules/$1"^^ . . . . "interaction/pathway" . "ecosystem science" . . "false"^^ . "d.smedley@qmul.ac.uk" . "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . "https://smid-db.org/detail/$1"^^ . . . "computer science" . "https://docs.gaia-x.eu/ontology/development/classes/"^^ . . . "http://www.lipidmaps.org/data/LMSDRecord.php?LMID="^^ . "https://www.uniprot.org/arba/"^^ . . . "The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).\n\nThe lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.\n\nOntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).\n\nMore information can be found at https://obofoundry.org/ontology/ontoavida.html"^^ . . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1"^^ . . . "http://sweetontology.net/phenEnergy/$1"^^ . . . "yetfasco" . . . . . . "http://sweetontology.net/realmAstroBody/$1"^^ . . . . . . . . . "ontocape" . "ontology" . "phenotype" . . . . . "gramene.qtl" . . . . . . . . "hasSpecifiedOutput"^^ . . . "pbpko" . . . . "text mining" . . . . "strain" . "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."^^ . "people" . . . "Conferences in EasyChair"^^ . . "http://purl.obolibrary.org/obo/OGMS_"^^ . . "https://icd.who.int/dev11/l-icf/en#/http://id.who.int/icd/entity/$1"^^ . . . . . . . _:N62808458561e40a2975edf388ee84e0b . "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary."^^ . . "units" . "Causal_Graphical_Model"^^ . . "http://www.hprd.org/protein/"^^ . . . . "openadr" . . "transyt" . . "false"^^ . . . "Clinical Trial Registries" . "VEGA" . . . "ontology" . "chemical structure" . . . "785"^^ . . . . "protein" . . "orthology" . "epio" . "Biological Spatial Ontology" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space"^^ . . . "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id="^^ . . . . . . "gear" . . "http://purl.obolibrary.org/obo/EXMO_$1"^^ . . . . . . "false"^^ . . . . "false"^^ . "miscellaneous" . "researcher" . . . . "ontology" . . . "The ROSETTA ontology of industrial robotics devices and robotic skills." . . . "phenotype" . "This shapes graph can be used to validate SHACL shapes graphs against a subset of the syntax rules."^^ . "protein" . "pocketome" . "cst.antibody" . . "person" . . "Google Books" . . "Thomas Keane" . "https://pk-db.com/data/$1"^^ . . . . "139042526584660102"^^ . . . . . . . . . . . "https://data.gesis.org/thesoz/concept_$1"^^ . . . . "false"^^ . "quantity" . "spar" . . . . . . "http://xmlns.com/wot/0.1/"^^ . . . "NCBI Genetic Code" . . . "^\\d+$"^^ . . "Close to 5K Categorizations for drugs, similar to ATCC."^^ . "ontology" . "0000590"^^ . "The 'Energy Market Roles' ontology module represents the energy market roles of energy agents. Additionally, it includes the consumer role, as it is reused in most of Smart Grid scenarios. This ontology module reuses the knowledge of the 'Actor' ontology module."^^ . . . "https://cropontology.org/rdf/CO_330:"^^ . . "G. Thomas Hayman" . . . . "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId="^^ . . "The Vibration Spectroscopy Ontology defines technical terms with which research data produced in vibrational spectroscopy experiments can be semantically enriched, made machine readable and FAIR."^^ . . "0000000"^^ . "^[A-Za-z0-9][A-Za-z0-9_\\-\\.]*[A-Za-z0-9]$"^^ . . . "Bibliographic Framework Initiative Vocabulary" . . "open educational resources" . "oncology" . "http://purl.obolibrary.org/obo/CEPH_$1"^^ . . . "G77500AY"^^ . "study design" . "ontology" . . . . "sosttc" . . "https://purl.dataone.org/odo/SASAP_"^^ . . . . "^\\d+$"^^ . "SAREF4MARI is an extension of SAREF for the maritime domain."^^ . "sorepdsg" . "false"^^ . . . "false"^^ . . . . . . "dataplant" . . "nord" . "upper level" . . . . . . "gene expression" . . "teresa.k.attwood@manchester.ac.uk" . . . "http://sweetontology.net/stateRoleRepresentative/"^^ . . "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1"^^ . . "ontology" . . "linmkl" . "ELI Metadata Ontology" . . . . "1200031"^^ . "ontology" . "imdrf" . . "nfdi" . . . . . "obo" . . . . "disease" . . "iot" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Coordinate"^^ . "ioio" . "true"^^ . . "https://mediadive.dsmz.de/solutions/"^^ . "PubMed ID" . . "sweet.mas" . "https://cropontology.org/rdf/CO_341:"^^ . "orientation"^^ . . . "digital planning and construction" . . . . . . . . "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication."^^ . . . "-12:00"^^ . "rna" . . . "A dictionary of named properties and classes for Software Package Data Exchange (SPDX) - an open standard for communicating software bill of material information, including components, licenses, copyrights, and security references. SPDX reduces redundant work by providing a common format for companies and communities to share important data, thereby streamlining and improving compliance. [from homepage]"^^ . "units" . "http://sweetontology.net/reprSciComponent/$1"^^ . . . "http://purl.obolibrary.org/obo/BMONT_$1"^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1"^^ . . . . . . "A representation of variables appearing in models in the environmental research space."^^ . "https://www.scopus.com/affil/profile.uri?afid="^^ . "https://www.ncbi.nlm.nih.gov/pubmedhealth/"^^ . . . "https://www.ebi.ac.uk/gene2phenotype/lgd/"^^ . . . "enzymatic reaction" . . . "Melissa Haendel" . "eea2b5c6-48d1-4612-957e-585783b3c7bb"^^ . "Namespace"^^ . . "http://sweetontology.net/stateBiological/$1"^^ . "BioSchemas" . . . "http://purl.obolibrary.org/obo/OBCI_$1"^^ . "ceds.learning_resource_type" . "sweet.marocki" . . . . "nfdi4chem" . . . . "false"^^ . "Ontology of Physics for Biology" . "protein analysis" . "false"^^ . . . . . . "ontology" . "false"^^ . . "^NONHSAG\\d{5}$"^^ . "VehicleProperty"^^ . . "structure" . "gene" . "slctr" . "^\\d+$"^^ . "https://plants.ensembl.org/id/$1"^^ . "https://reporter.nih.gov/project-details/$1"^^ . "false"^^ . "developmental biology" . . . . . . "https://www.google.com/patents/$1"^^ . . "Vocabulary for describing organizational structures, specializable to a broad variety of types of organization."^^ . "true"^^ . "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"^^ . "false"^^ . . . . "social science" . . "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases."^^ . . . "TBK Reddy" . . . "0745-4570"^^ . "410"^^ . . "ontology" . . . . "false"^^ . . . "hoip" . "mathematical" . "icpd.project" . . "AU124"^^ . . . . "hpm.peptide" . "deims.site" . . "computational biology" . "nlx.chem" . "Stephan Sinn" . . . "SNOMEDCT_US_2021_09_01" . . . "genome/gene" . . "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites."^^ . "health/disease" . "ssn" . . . "false"^^ . . . "Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology" . "taxonomy" . "false"^^ . . "SL-0002"^^ . "^.+$"^^ . "civic.evidence" . . . "AtmosphericBoundaryLayer"^^ . . . "exposure" . . . . . . . . "false"^^ . "^\\d+$"^^ . "The Addiction Ontology (AddictO) is an ontology being developed all aspects of addiction research."^^ . "Ocean Information Model" . "^\\d{7}$"^^ . . . . . "mutation" . . . "http://sweetontology.net/reprDataServiceValidation/"^^ . "biomarker" . "genome/gene" . "1000"^^ . "ontology" . . "false"^^ . "Merck Index Reaction" . . "ess" . . "ontology" . "ModelDB concept" . . "obo" . . . . "Guy Perrière" . . "license" . . . . . . "0000400"^^ . . . "Flybase Cell Line" . "Surjeet Kumar Arya" . "citlalli.mejiaalmonte@gmail.com" . "TopFind" . "ubio.namebank" . "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN="^^ . "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"^^ . . . . . . "http://www.w3id.org/Concept/Ontology/COnDO#$1"^^ . . "false"^^ . . . . "https://entomology.ca.uky.edu/content/"^^ . . . . . . . "ontology" . . . . . . "relationships" . . . . "http://purl.obolibrary.org/obo/WBPhenotype_"^^ . "A representation of the periodic table of the elements in OWL, with both elements and a hierarchical classification. This is from the DARPA Agent Markup Language (DAML) project, which has been inactive since the mid 2000's."^^ . . . "GPS_location"^^ . . "https://www.ebi.ac.uk/ipd/imgt/hla/alleles/?query=eq(name,%22$1%22)"^^ . . "http://jcggdb.jp/idb/jcggdb/"^^ . "drugs" . "Rat Genome Database strain" . . . . "observations" . . . . "The pattern for expanded URIs in the given resource" . "ICD10" . "phenotype" . "false"^^ . . . . . "morpheus.lab/morpheus"^^ . "ECOCYC" . . . "obo" . . . "https://psskb.org/motif/card/$1"^^ . . "sweet.sto" . . . . . "SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way."^^ . . "obo" . . . . . "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1"^^ . . . . . . . . . . "mirgenedb" . "ontology" . . "gene expression" . . . . . . . . "A collection of resources added during Biocuration 2025 in Kansas City, MO, USA." . "goldbook" . . . "schema" . . . . . . . . . . "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques."^^ . . . "representation time season" . . "ncbigene" . . . "true"^^ . "Daniel N. Wilson" . "taxonomy" . . "17503"^^ . . "protein" . . . . "http://synbip.idrblab.net/data/sbp-target-complex/details/"^^ . "^PM\\d{7}$"^^ . "lobid vocab" . . "Duration"^^ . "classification" . . . . . . . . "sparcdrs" . . . . "http://sweetontology.net/stateSolid/"^^ . . "false"^^ . . . . "Continuous"^^ . . . . "The Generative Artificial Intelligence Delegation Taxonomy (GAIDeT) assigns identifiers to contributor roles as an extension to the Contributor Roles Taxonomy (CRediT) to support promoting transparency and accountability in academic publishing when AI contribtors are involved in research. It is operationalized in the [GAIDeT Declaration Generator](https://panbibliotekar.github.io/gaidet-declaration/), an interactive tool for researchers to disclose the delegation of tasks to generative AI (GAI) tools in accordance with the GAIDeT taxonomy."^^ . . "Codon Usage Tabulated from GenBank" . . . . . . . "http://www.proglycprot.org/detail.aspx?ProId="^^ . "Vbase2" . "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1"^^ . . . . . . "protein" . . . . "https://data.terra.bio/ga4gh/drs/v1/objects/$1"^^ . "MetaNetX compartment" . "PhosphoSite Residue" . "http://sweetontology.net/propIndex/"^^ . . "Gramene Growth Stage Ontology" . "life science" . . . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State System"^^ . "0001114"^^ . "Data Catalog" . . "MNXM1723"^^ . "IEEE Xplore document ID" . "Development Data Object Service" . . . . . . . . . . . "^MMP\\d+.\\d+$"^^ . . "false"^^ . . . "developmental biology" . "https://w3id.org/dot#"^^ . "OpenCitations Meta Identifier" . . . . "https://cannabisdatabase.ca/compounds/CDB"^^ . "0000598"^^ . . "ThermoFisher is a life sciences supply vendor."^^ . . "false"^^ . "false"^^ . . . . . "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1"^^ . . . . . "fisheries science" . . . . "http://lisanwanglab.org/DASHR/entry/"^^ . . . . "http://www.peptideatlas.org/PASS/"^^ . . . . . "Animal"^^ . . "^\\d+$"^^ . "KIM School Subjects" . . . . . "false"^^ . "ontology" . . "interaction" . . . . . . "325.4"^^ . . . "^\\d+$"^^ . "skos" . . . . "OBO Metadata Ontology" . "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013."^^ . "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data."^^ . . . . "^\\d{7}$"^^ . _:N46f7100a9f944bab80718a0de33b0235 "arthur.schiltz@pwc.com" . "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^ . "SWEET Ontology Phenomena Atmosphere Fog" . . . "somaind" . . . . . . . "ontology/terminology/nomenclature" . . "A project in the nmrXiv"^^ . "identifier of an entry in the NCI Drug Dictionary"^^ . . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . "geochemistry" . . . "Kaggle" . . . "gc" . "BP100000"^^ . . . "environment" . . "unii" . . . "C. elegans development ontology" . . . . "http://purl.obolibrary.org/obo/MONDO_$1"^^ . "https://www.gwascentral.org/phenotype/$1"^^ . . . "ontology" . "http://sweetontology.net/phenPlanetClimate/$1"^^ . "sophfd" . . "phenotype" . "^[0-9]+$"^^ . . . . "comparative genomics" . . "http://purl.obolibrary.org/obo/PLANA_$1"^^ . "https://w3id.org/semapv/vocab/$1"^^ . . . . . . "https://data.chembiosys.de/strains/$1"^^ . . . . . . "Research Organization Registry" . . . . . "http://bigg.ucsd.edu/models/$1"^^ . . . "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?"^^ . "human" . . "genetics" . . "Frederic Bastian" . "Q1059224"^^ . "Controlled vocabulary for the Dublin Core term format"^^ . . . . . . "Intrinsically Disordered proteins with Extensive Annotations and Literature" . . . . "638309541"^^ . "false"^^ . "Gainesville Core Ontology" . "Continental"^^ . . "false"^^ . . . . . "An ontology for description of concepts in the nutritional studies domain."^^ . . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . _:Nc35af1537d7c46e586eba122cfb6e377 . . . . . . "^\\d+$"^^ . "mdl" . _:N87ae647580904a3ba6091fefce9e4bf1 "report@mail.nih.gov" . . . . . . "handle" . . "SNOMECT" . . "nfdi4chem" . . . "http://sweetontology.net/realmGeolOceanic/"^^ . "http://sweetontology.net/matrElementalMolecule/"^^ . "false"^^ . . . . "true"^^ . . . . _:N9f04232155df41b99322f62aee620e46 "julie@igbmc.u-strasbg.fr" . "rna" . . . . . "An expanded example URL for a resource or metaresource." . "organism" . "ChEMBL target" . . . "ero" . "00100037"^^ . "chemical compound" . . . . . "^CL\\d+$"^^ . . "00000000001"^^ . "obo" . "polcaes@gmail.com" . "^D\\d{4}$"^^ . "German decimal classification system based on the Dutch Basic Classification (NBC)"^^ . . . . . . . . . "adeans@psu.edu" . . . . . "spider" . . "Workflow"^^ . "MIPModDB" . . "false"^^ . "ontology" . "Francesco Vitali" . "spdx" . . "PepBank Peptide Database" . _:N26d15368e29d4b7ab5a7cc24408512a4 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Sediment"^^ . . . . "concentration" . . "NIHhESC-10-0083"^^ . "ontology" . "false"^^ . . "^\\d+$"^^ . . "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1"^^ . . "drug" . . _:Nca706ef04a1b4cf291b0d3e94d3ee8ca . . "ArithmeticMean"^^ . . . . "curricula" . "false"^^ . "https://merckindex.rsc.org/monographs/$1"^^ . . . . "Describes the time dimension of the data collection."^^ . . . _:N0f8b242459da4106aedd66d3f954b5c7 . "http://purl.obolibrary.org/obo/AISM_"^^ . "^\\d+$"^^ . . . . . . "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1"^^ . . "ACTRN12623000498695"^^ . "false"^^ . . "Galaxy Training Network" . . . . . "pathology" . . . "Wiktionary" . "false"^^ . "apto" . "http://www.w3.org/ns/prov#"^^ . "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl="^^ . . . "false"^^ . "ubprop" . . . . "ucas" . . . "Identifier of a taxon or synonym in the Catalogue of Life"^^ . . . . . . . . . . "project" . . . "disease" . "^\\w+$"^^ . . "WikiPathways is a database of biological pathways maintained by and for the scientific community."^^ . "ontology" . "drosophila" . . . "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages."^^ . . . . "false"^^ . . . "aclame" . . "An ontology for mouse anatomy covering embryonic development and postnatal stages."^^ . "SWEET Ontology Property Time Frequency" . . "vietherb.metabolite" . . . "atcc" . . . . . . . . . . "ieee.author" . . . . . . "https://www.ncbi.nlm.nih.gov/homologene/$1"^^ . . "s4inma" . . . . "false"^^ . . . "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."^^ . "PDB_CHEM_ID" . . . . . "unists" . . "assay" . "Metabolomics Workbench Project" . . . "http://bactibase.hammamilab.org/"^^ . . "genetic variation" . "multicellds.snapshot" . . . "false"^^ . . . "https://hpc-fair.github.io/ontology#"^^ . "hasProperty"^^ . . "sweet.reac" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Chemical"^^ . . "alzheimer's disease" . . . . "LMPR0102010012"^^ . . . . "biology" . . . . "interaction/pathway" . . . "https://hpscreg.eu/cell-line/$1"^^ . . "rdf" . "ontology" . . "imgt.primerdb" . . "cio" . . . . "sweet.maio" . . "protcom" . "annotation" . "structure" . . "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries."^^ . . "ontology" . "synthetic biology" . . . . . "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme."^^ . . . . "http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae5.owl#"^^ . . "faircookbook" . "cabri" . _:Nd6f5588a6a1a4803999a6f9ba46410ae . "geonames.ontology" . "Viral Bioinformatics Resource Center" . . "Oryza Tag Line" . . . "false"^^ . "genome" . . . "1443"^^ . "obo" . . "false"^^ . "http://www.informatics.jax.org/accession/MGI:"^^ . . "inaturalist.taxon" . . "life sciences, biology" . "pmdco" . . . "The Animal Genome Size Database (AGSD) is a comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources."^^ . "ChangeEvent"^^ . . . . . "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases."^^ . . "European Commission Library Thesaurus" . . "^\\d+$"^^ . . . "http://ktmfk.de/ontology/tribAIn/"^^ . "SWEET Ontology Relationships Space" . . . . "Luis A. Gonzalez-Montana" . . . . "http://vocabs.lter-europe.net/EnvThes/$1"^^ . "Paul D Thomas" . . "false"^^ . . . . "http://www.rcsb.org/ligand/$1"^^ . . "false"^^ . "^\\d{1,7}$"^^ . "^\\d+$"^^ . "^\\d+$"^^ . "drugs" . . . . "false"^^ . . "http://purl.obolibrary.org/obo/OHMI_$1"^^ . "biology" . "Sue Bello" . "longevity" . . . "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time."^^ . . "Asteraceae Genome Database - Genome" . . . . "http://elite.polito.it/ontologies/dogont.owl#"^^ . "centrally registered identifier" . "fairmdlipids" . "OMIA variants" . . . "plant phenotypes and traits" . "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no="^^ . "Gi07796"^^ . . "https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_"^^ . . "^\\d{7}$"^^ . . "ontology" . . . . . . "https://arxiv.org/abs/"^^ . . "http://www.ribocirc.com/rna_detail.php?circ_id=$1"^^ . . . . "biomodels.teddy" . . . . "^r\\d+$"^^ . "The Basic Access Control ontology describes how access rights (access control) are defined on the web."^^ . "http://vocabularies.bridgedb.org/ops#$1"^^ . . "clm" . "genome/gene" . . "genome" . "^\\w{2,3}(-\\w+)?$"^^ . . . . . "https://gudmap.org/id/$1"^^ . "187021"^^ . "Acceptance"^^ . "dwc" . "FuncBase Fly" . "odamexplorer" . "The Bibframe vocabulary consists of RDF classes and properties used for the description of items cataloged principally by libraries, but may also be used to describe items cataloged by museums and archives. Classes include the three core classes - Work, Instance, and Item - in addition to many more classes to support description. Properties describe characteristics of the resource being described as well as relationships among resources. For example: one Work might be a \"translation of\" another Work; an Instance may be an \"instance of\" a particular Bibframe Work. Other properties describe attributes of Works and Instances. For example: the Bibframe property \"subject\" expresses an important attribute of a Work (what the Work is about), and the property \"extent\" (e.g. number of pages) expresses an attribute of an Instance."^^ . . . "4D Nucleome Data Portal Biosource" . "electrocardiography" . . "neurobiology" . "life science" . "^bkc[0-9]*$"^^ . . _:N46f7100a9f944bab80718a0de33b0235 . . "data analysis" . . . . "metabolite" . . . "anatomy" . . "http://genomics.senescence.info/diet/details.php?id=$1"^^ . . . . "SWEET Ontology Representation Mathematics Function" . "true"^^ . "ontology" . . "^\\d+$"^^ . . "UBPROP" . . . "false"^^ . "false"^^ . "Human developmental anatomy, timed version" . . "anatomy" . "^\\d{7,}$"^^ . . . "hasExport"^^ . . "https://rarediseases.info.nih.gov/diseases/$1/index"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Body"^^ . . "http://www.phi-base.org/searchFacet.htm?queryTerm=PHI:"^^ . . . . . "ISO 3166-1 alpha-2 country codes and names."^^ . "false"^^ . . . "true"^^ . . "life cycle stage" . . "sbml" . . . . . "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"^^ . . "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease."^^ . . . . "as" . . . "false"^^ . . "Provenance Information for Materials Science Ontology - Computational Module" . . "ddi.generaldataformat" . "false"^^ . . . "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#"^^ . . . . . "^CCDS\\d+(\\.\\d+)?$"^^ . "http://sweetontology.net/realmLandform/"^^ . "clyh" . . "ontology" . "This ontology defines traits of the International Wheat Information System (IWIS) database and wheat descriptor. The Wheat Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . "The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to individual chemicals."^^ . "health/disease" . "Self"^^ . . . "https://humap3.proteincomplexes.org/displayComplexes?complex_key="^^ . . "^B\\d{5}$"^^ . . "@biopragmatics/curies"^^ . "obo" . . "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1"^^ . . "co_338" . "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . "http://cellimagelibrary.org/images/$1"^^ . . "hms.lincs.antibody" . . . "false"^^ . . "sostrg" . "ontology" . "ontology" . . . "Clinical Trials Ontology" . . "^\\d+$"^^ . "false"^^ . . . . "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism."^^ . "https://w3id.org/kim/isced-2011/level$1"^^ . . . . . . . "https://biopragmatics.github.io/providers/sdis/$1"^^ . . . "salamander" . . . . . . . _:N34e07ea3ccc94ed38578f4524b8eda70 "SEP developers" . "ontology" . "Chris Stoeckert" . . . "^[a-zA-Z0-9-]+$"^^ . . . . . . "HUMAN0000304"^^ . . . "uc001rvw.5"^^ . . . "http://bimerr.iot.linkeddata.es/def/information-objects#"^^ . . . "FAIRmat Collection" . "phenotype" . "Rachael P. Huntley" . . . _:N7767c7132a77436b9a2ac519ff821541 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . "david.c.blackburn@gmail.com" . "European Bank for induced pluripotent Stem Cells" . "SWEET Ontology Phenomena Mixing" . . "85dc6019-9654-4ba0-8338-08c4ffe8fe47"^^ . "http://purl.obolibrary.org/obo/LEPAO_$1"^^ . . "http://sweetontology.net/propCount/$1"^^ . . . "snp2tfbs" . "https://codemeta.github.io/terms/#$1"^^ . . "genome" . . . . . . . "nfdi4ing" . . "ontology/terminology/nomenclature" . . . . "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances."^^ . "false"^^ . . . . "col" . . . . "associatedTo"^^ . . . . . "the European Hepatitis C Virus Database (euHCVdb, euhcvdb.lyon.inserm.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses."^^ . "https://www.ebi.ac.uk/interpro/entry/pfam/"^^ . . . . . "mutant" . . "ontology" . . . "Aclame" . . "Protege Ontology" . . _:N2584e57d7e414a2fb23af4778bbdb289 "d.fichtmueller@bgbm.org" . . . "repository" . "3447"^^ . . . . "R00100"^^ . "40000617"^^ . "http://n2t.net/ark:$1"^^ . "false"^^ . "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id="^^ . "Mobility Theme" . . . . . . . "000000012281955X"^^ . "https://cropontology.org/rdf/CO_357:$1"^^ . "Registry of Research Data Repositories" . "ess" . . _:N889fbbd105f74a07ba7944cb6b834fe5 "Sean Roberts" . "structural biology" . . . "false"^^ . "false"^^ . "https://www.inaturalist.org/places/$1"^^ . . "Xenbase" . . "false"^^ . . "grin.taxonomy" . . . "A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number."^^ . "sopropcap" . . . "phenotype" . . . . "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . "cruise"^^ . . "cell biology" . . "protein" . . . . "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln="^^ . . . . "small molecule" . . . "http://classyfire.wishartlab.com/tax_nodes/C"^^ . "tto" . . . "false"^^ . "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States."^^ . "kuiper@bio.ntnu.no" . . . . "contributor roles" . . . . . "90901"^^ . "protege" . . "^[0-9]{4}$"^^ . "false"^^ . . . "false"^^ . . "kaggle" . . "Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip."^^ . . "organism" . . "^\\d+$"^^ . . . . . . . . "This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research."^^ . "false"^^ . . "NLXORG covers organisms."^^ . . . "small molecule" . "economics" . "srao" . _:N4467679543e14d4b989a9e489dbc694b . "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$"^^ . . . . "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase."^^ . "^SIGNOR-\\d+$"^^ . "https://oid-base.com/get/"^^ . . . . . . "https://pubchem.ncbi.nlm.nih.gov/cell/$1"^^ . . "omim.ps" . "adult" . "ardb" . . . "http://sweetontology.net/relaPhysical/$1"^^ . "http://www.bind.ca/Action?identifier=bindid&idsearch=$1"^^ . . . "dataplant" . "sweet.strc" . . "portal" . "ontology" . . . "chemical" . "debio" . "Vilma Hualla Mamani" . . "false"^^ . "false"^^ . "genetree" . "glenn.king@imb.uq.edu.au" . . "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch="^^ . . "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$"^^ . . "chemistry" . "Habronattus courtship" . "Word"^^ . "protein" . . "http://gemma.msl.ubc.ca/ont/TGEMO_$1"^^ . "Curated Drug-Drug Interactions Database - Interaction" . "fbrf" . "a3bc9e6193c47998758ac9d9bf9ddbb6"^^ . . . "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant."^^ . . "The FTOnto enables reseachers to sematically describe a physical fischertechnik factory simulation environment. This is archieved by aligning concepts from MASON and SOSA with own concepts. Furthermore the FTOnto can capture knowledge about semantic web services which are used to interact between the service-layer and the cyber-physical layer in a cyber-physical production system. This includes precondition which have to be met before a webservice can be performed, postconditions which check if the webservice execution was performed successfully and effects which describe the changed state of the domain after performing a service. [from homepage]"^^ . . "chemistry databases" . . "^[A-Za-z0-9]+$"^^ . . "0110974"^^ . "TogoID Ontology" . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information."^^ . . . "https://dialnet.unirioja.es/servlet/libro?codigo="^^ . . . "enzyme" . . . . . "Includes a typology of data collection instruments."^^ . "false"^^ . "gtdb" . . . . "dataplant" . "Crystallographic Information Framework" . "spd" . "Q42"^^ . . . . "s4envi" . . . "http://purl.uniprot.org/uniprot/$1"^^ . . "false"^^ . . . "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1"^^ . "lipidomics" . "Jörg Stülke" . . "false"^^ . . "nikolaos.moustakas@catalysis.de" . . . . . . . . "NanoParticle Ontology" . . "pathway" . "education level" . . "UMIN000049383"^^ . . . . . "17:41223048"^^ . "chempro.target" . . "lincs" . "ddi.analysisunit" . . . "false"^^ . "joel.richardson@jax.org" . . . . "880798137"^^ . "expression data" . . "false"^^ . . . . "https://data.chembiosys.de/models/$1"^^ . . . . "^S\\w+(\\.)?\\w+(\\.)?$"^^ . . "funding bodies" . . "A type for entries in the Bioregistry's registry." . "^BD\\d[a-zA-Z0-9]+-[A-Za-z]-[A-Za-z]-[A-Za-z0-9]+$"^^ . . "^[A-Za-z_0-9]+$"^^ . _:N892302d7b4dc4106bbcc88abd65eb7ea "pbrooks@hcfa.gov" . "false"^^ . "131392"^^ . "CHEMBL4303805"^^ . "molbic.cellline" . . "SYMP" . "nmrxiv.sample" . . . . . . "false"^^ . . "tkg" . "https://www.dpvweb.net/dpv/showdpv/?dpvno="^^ . "3000001"^^ . "https://www.webelements.com/"^^ . "isced2011" . "http://purl.obolibrary.org/obo/AEON_$1"^^ . "complex" . "https://nfdi.fiz-karlsruhe.de/nfdi4dso/$1"^^ . . . . . "addicto" . . . "S0960-9822(11)01319-4"^^ . "donovan.parks@gmail.com" . "innatedb" . . "algorithm" . "http://purl.obolibrary.org/obo/OVAE_"^^ . . "Ensembl Protists" . . . . "Fahim Imam" . . . . "civic.molecularprofile" . "http://reg.clinicalgenome.org/allele?hgvs="^^ . . . . . "https://mgtbind.pkumdl.cn/compound/"^^ . . "senso" . . "sohuc" . . . . . "VFDB Genus" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process State Change"^^ . . . "knockrbp" . "phenomena" . "SNP500Cancer" . . . . . "Kinetic Simulation Algorithm Ontology" . . . "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings."^^ . . . "https://vocabularies.cessda.eu/vocabulary/DataSourceType?lang=en#code_$1"^^ . . "representation data service" . "protein-protein interactions" . "DataPLANT Biology Ontology" . "https://www.gbif.org/species/$1"^^ . . "MarFun is manually curated database for marine fungi which is a part of the MAR databases."^^ . . . "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1"^^ . . . "http://purl.org/goodrelations/v1#$1"^^ . . . "ontology" . . . "0000111"^^ . "https://www.ncbi.nlm.nih.gov/dbvar/studies/"^^ . . "^A_\\d+_.+$"^^ . "Global Biodata Coalition - Global Core Biodata Resources" . "C34"^^ . . "data retrieval" . . . "cycle material" . "peptideatlas" . . . . . . . . . "Aceview Worm" . "mouse" . . "https://purl.org/fmi-ontology#$1"^^ . . . "^10.\\d{2,9}/.*$"^^ . . . . "false"^^ . "pharmacology" . . . . "obo" . . "https://vocabularies.cessda.eu/vocabulary/CommonalityType?lang=en#code_$1"^^ . . . . "false"^^ . "^\\d+$"^^ . . "http://cerevisiae.oridb.org/details.php?id=$1"^^ . "false"^^ . . . . . "recombinant host" . "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1"^^ . "12"^^ . . . "ontology" . "sweet.phfd" . . "nlx.br" . "^\\d{5}$"^^ . . . . . "sweet.reagoc" . . . "Taxonomy of Digital Research Activities in the Humanities" . "ontology" . . . . "https://biosimulations.org/projects/$1"^^ . "data quality" . . . "^(data|topic|operation|format)\\_\\d{4}$"^^ . . . . . "Scopus Researcher" . . . . . . "euvoc"^^ . "^\\d{1,5}$"^^ . . . . . "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx)." . . "The Semantic Resource Types Vocabulary was created for NSF's EarthCube Program's Resource Repository. Includes entries for things like 'thesaurus', 'ontology', 'controlled vocabulary', 'taxonomy'."^^ . . "representation science provenance" . . "https://vocabularies.cessda.eu/vocabulary/DateType?lang=en#code_$1"^^ . "SNOMEDCT_US_2021_03_01" . "soreagcont" . . . . . . . . "Ontology for Immune Epitopes" . . . "Tarcisio.Mendes@sib.swiss" . . "worm" . . "biopesticides" . . . . "GWAS Catalog" . . "iuphar.receptor" . . "http://sweetontology.net/realmAstroHelio/$1"^^ . . . "structure" . . . . . . . "materials" . . . . "vendor" . "wikipedia" . "AcknowledgementCondition"^^ . "experimental measurement" . . "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria."^^ . "gene expression" . . . . . . "sostsl" . "NLX" . . . . . . . "http://usefulinc.com/ns/doap#"^^ . "Ontology of Biological Attributes" . "mass spectrum" . . . . . "http://getentry.ddbj.nig.ac.jp/getentry/dad/"^^ . . "oefos" . . . "10193"^^ . . . . . . . "true"^^ . . "https://www.ebi.ac.uk/metagenomics/studies/"^^ . "Kelly T. Hughes" . . . . "CDB-00133756-001"^^ . . "guiderdoni@cirad.fr" . . "Catalytic Site Atlas" . . . . . "SPCC13B11.01"^^ . "computer science" . . "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome."^^ . "http://purl.obolibrary.org/obo/COLAO_$1"^^ . "uniprot.arba" . . . "https://www.chemfont.ca/chemicals/"^^ . . "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#$1"^^ . . "false"^^ . . . . "sostrc" . . . . "^SL-\\d+$"^^ . . "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1"^^ . . . "https://purls.helmholtz-metadaten.de/$1"^^ . . . "sweet.phcm" . "activator"^^ . . "https://www.arabidopsis.org/protein?key="^^ . . "OGI.owl" . . . "life sciences, biology" . . . . . "AgeostrophicWind"^^ . "ontology" . "^\\d+$"^^ . . "sopropcha" . . "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative."^^ . . . "xao" . "A list of values for class levels. Created in the context of the OpenEduHub"^^ . . . . . "0000091"^^ . "physics" . . "allotrope.quality" . "AdministrativeUnit"^^ . "ybradford@zfin.org" . . . . . . . "mirEX" . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . "eurovoc" . . . . "GeneTree" . "life science" . "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL). The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet. As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use."^^ . . . "sweet.repm" . . . . . "ArchDB is a compilation of structural classifications of loops extracted from known protein structures. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.."^^ . "bykdb" . "Advection"^^ . "6038"^^ . . "false"^^ . . "http://ontology.bonsai.uno/core#$1"^^ . . . . "http://sweetontology.net/stateFluid/$1"^^ . "envthes" . "dbSNP" . . . "http://www.lncrnadb.org/$1"^^ . "sorealf" . "https://www.ncbi.nlm.nih.gov/cdd?term=$1"^^ . . "Gene Expression Omnibus" . . "ogg" . "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location."^^ . . "Allocation"^^ . . "phenomena" . . . "PharmGKB Gene" . . "530"^^ . . . . . "bacmap.biog" . "http://biomeddb.org/Disease/Details?DISEASEID=$1"^^ . "http://purl.obolibrary.org/obo/ONE_"^^ . "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" . . "ontology/terminology/nomenclature" . . "A vocabulary for describing types of Methods associated with creating observations. MethodTypes correspond with ActionTypes in ODM2. An Action must be performed using an appropriate MethodType - e.g., a specimen collection Action should be associated with a specimen collection method."^^ . . "computer science" . . . . "SNPs and other variants that can be mapped to dbSNP."^^ . "false"^^ . . "http://purl.obolibrary.org/obo/CARO_$1"^^ . . . . . . . . . . "ChEMBL tissue" . . . . . "Native"^^ . "foster@uchicago.edu" . "https://w3id.org/kim/isced-2013/"^^ . . . . . "http://www.w3.org/ns/ssn/systems/$1"^^ . "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule="^^ . . . . . . . "MPATH" . "true"^^ . . . . . "organism" . . "Food-Drug interactions automatically extracted from scientific literature"^^ . . . "SEQF1003.1"^^ . "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . . . "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid="^^ . . "0002502"^^ . "Eric W. Sayers" . . . "https://drugs.ncats.io/drug/$1"^^ . . . . "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1"^^ . . . "90000018"^^ . . . "Sonia Balyan" . "https://www.ncbi.nlm.nih.gov/nuccore/$1"^^ . . "pdb-ccd" . "sweet.propsdir" . . "^\\d+$"^^ . "false"^^ . . . . . "batchelorc@rsc.org" . . . "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"^^ . "life science" . . . . "http://purl.obolibrary.org/obo/LIPRO_"^^ . . . . . . . "https://deims.org/networks/"^^ . "has canonical" . "dev.ga4ghdos" . . . . "^\\d+$"^^ . . "Data Science Ontology" . . "data infrastructure" . . . . . "Motonori Ota" . . _:N41ec8930ff9a4e0492f5edf1ba88da72 "Alistair Miles" . "true"^^ . . . . . "Cell line collections (Providers)"^^ . . . . . . "false"^^ . . . . . "genome/gene" . "https://beilstein-strenda-db.org/strenda/public/doiQuery.xhtml?doi=10.22011/strenda_db."^^ . "Curated Drug-Drug Interactions Database - Drug" . "Peer Bork" . "false"^^ . "false"^^ . . "ontology" . . . . "imsr_em" . "false"^^ . . "https://www.clinpgx.org/accession/"^^ . . . "https://www.w3.org/2022/wot/tm#"^^ . . . . . "antibody" . "https://oerschema.org/"^^ . "growth profiles" . "obo" . "COEXISTENCE" . "ess" . . . "Rhiannon Cameron" . . . "hilmar.lapp@duke.edu" . . . "genome" . . "0000001"^^ . "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."^^ . _:Nba62dd7a462f4cb8ad2db7784cdcc3ef "NLM Customer Service" . "http://sweetontology.net/reprSciLaw/$1"^^ . . "Yu Zong Chen" . "LiceBase" . . "comparative genomics" . "dbpedia.property" . "Tobias Schulze" . . . "http://multicellds.org/MultiCellDB/"^^ . "Record Control Number for project/org/person under EU Framework Programmes"^^ . . . . . "researcher" . . . . . . "Crystallographic Defect Core Ontology" . "false"^^ . . . . . . "repository" . "bmeldal@ebi.ac.uk" . . . "false"^^ . . "BridgeDb Vocabulary" . . "genomics" . "exac.transcript" . "P10636"^^ . . . "false"^^ . . "genome/gene" . . "false"^^ . . . . . "ontology" . "false"^^ . . . . . "PharmGKB" . "umbbd.pathway" . "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains."^^ . . . _:Nbbf47975542c4f83a60761974afaab7a "Natalie L Catlett" . "state role representative" . "126"^^ . "http://purl.obolibrary.org/obo/FBbi_"^^ . . "MSBNK-IPB_Halle-PB000166"^^ . "https://purl.org/ontology/modalia#$1"^^ . "dialnet.journal" . "http://vocab.nerc.ac.uk/collection/P07/current/$1"^^ . "http://id.loc.gov/vocabulary/resourceTypes/"^^ . "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."^^ . . . . "bodc.cf" . "infectious disease medicine" . "DataNode"^^ . "portal" . . "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments."^^ . "Dan Brickley" . . "Q-2958"^^ . "KEGG Disease" . . "https://w3id.org/faircookbook/$1"^^ . . . "false"^^ . "Torsten Schwede" . . . . "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data."^^ . "realm" . . "protein" . . "Software Ontology" . "interaction" . . "Fossilworks Journal" . . "biomedical science" . . "27223"^^ . "http://w3id.org/ioc#"^^ . . "https://bioregistry.io/vdrc:"^^ . . "KEGG.DRUG" . "SWEET Ontology Property Difference" . "cmedigue@genoscope.cns.fr" . "false"^^ . "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . . . "physics" . "http://ecoportal.lifewatch.eu/ontologies/$1" . . "https://d-nb.info/standards/elementset/gnd#$1"^^ . "life science" . "^\\d{7}$"^^ . . . "behavior" . . . . . . "false"^^ . "ontology" . . . "oim" . "https://cropontology.org/rdf/CO_339:"^^ . . "^D\\d+$"^^ . . "rna" . "false"^^ . . "This database provides identifiers for catalytic bioparts which are fundamental to the design, construction, and optimization of biological systems for specific metabolic pathways. It provides basic information, function information (including catalytic functions, qualitative and quantitative parameters, and biopart expression), and sequence information (nucleotide sequence and amino acid sequence)"^^ . . . . "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea"^^ . . . "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information."^^ . "biomedical science" . . "false"^^ . . . . "anatomy" . "Vocabulary of a Friend" . "false"^^ . "social science" . . . . . . . . . "http://aps.unmc.edu/AP/database/query_output.php?ID="^^ . "Electron Microscopy Glossary" . "https://www.perkinelmer.com/searchresult?searchName=$1"^^ . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances."^^ . . . "biology" . "https://vocabularies.cessda.eu/vocabulary/TypeOfNote?lang=en#code_$1"^^ . "electron microscopy" . "^(application|audio|font|haptics|image|message|model|multipart|text|video)(/.*)?$"^^ . . "sequence" . "rna" . . . "false"^^ . "http://bitterdb.agri.huji.ac.il/Receptor.php?id="^^ . . "structure" . . . "e.arnaud@cgiar.org" . "QualityAnnotation"^^ . . "The Dewey Decimal Classification (DDC) system, devised by library pioneer Melvil Dewey in the 1870s and owned by OCLC since 1988, provides a dynamic structure for the organization of library collections. Now in its 23rd edition, and available in print and Web versions, the DDC is the world's most widely used library classification system."^^ . "false"^^ . "life science" . . . "Open Researcher and Contributor" . . "https://omim.org/MIM:$1"^^ . "Human Intermediate Filament Database" . "organism" . . "^\\d+$"^^ . "DrugBank" . . "anatomy" . "https://www.osti.gov/biblio/$1"^^ . . . "https://smpdb.ca/view/"^^ . . . . . . "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1"^^ . "Heike Fliegl" . . . . . . . "false"^^ . "agriculture" . . "false"^^ . . "Influenza Sequence and Epitope Database" . . "chromatography" . . . . "Identifiers for biospecimens used in experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . . . "https://pharmacodb.ca/datasets/"^^ . "ontology" . "BSU29180"^^ . "seo" . "omia" . "Vienna Drosophila Resource Center" . . . . . . . . . "ICD 11 Codes" . . "http://www.yeastract.com/view.php?existing=locus&orfname=$1"^^ . "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER."^^ . . "food" . . . "F001"^^ . "livestock" . . . "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments."^^ . . . "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)."^^ . . "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1"^^ . . "cdna/est" . . "https://w3id.org/kim/hcrt/$1"^^ . . "https://ontome.net/ontology/$1"^^ . . . "obo" . . "^\\w{4}$"^^ . "ontology" . . . . . . "true"^^ . . "bgee.stage" . . "^\\d{7}$"^^ . "noaa.species" . "http://sweetontology.net/realmRegion/$1"^^ . . . "false"^^ . . . "r3d100014165" . "classification" . "^\\d+$"^^ . . . . "https://www.nfdi.de/wp-content/uploads/2023/03/NFDI_4_Biodiversity___Logo_Positiv_Kopie.png"^^ . . . . . "ontology/terminology/nomenclature" . . . "unique identifier for an entity in the PharmGKB knowledgebase"^^ . . "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded"^^ . . _:Ndb73e78062ca4a6aaacdbe1f1594987d "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "ifloprop" . . . "https://dblp.org/rec/$1"^^ . . . "^PA[1-9]\\d*$"^^ . . . "genome" . . "Obstetric and Neonatal Ontology" . . . "mro" . . . "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default"^^ . . . . . . "http://flowrepository.org/id/"^^ . . "^\\d+$"^^ . . "classification" . "false"^^ . "MMs00000001"^^ . . . . "morphology" . "AberOWL" . "life science" . "^\\d+$"^^ . "pharmacology" . . . . . . "building design" . . "organism" . . . . "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins."^^ . . "Alicia Clum" . "http://uri.neuinfo.org/nif/nifstd/nlx_inv_"^^ . . . . . "nfdi4ing" . "protein family/group databases" . "https://www.scopus.com/authid/detail.uri?authorId=$1"^^ . . . . . . "PneumoWiki" . . "representation mathematics graph" . "SWAN ontology consists in a collection of ontologies used to create, manage and share scientific knowledge bases."^^ . "registry" . . . . . . . . . "myco.marinum" . "sequence" . "https://swissmodel.expasy.org/repository/uniprot/"^^ . . "https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code=$1"^^ . . . "cell" . . . . . . . . . "Educational Resource Discovery Index Schema" . . . "true"^^ . . "Sequence Read Archive" . "odrl" . . "NLXINV" . . "gene" . "https://pmb-bordeaux.fr/maggot/metadata/"^^ . . . . . "http://sweetontology.net/propChemical/"^^ . "aftol.taxonomy" . "obo" . . . "^YMDB\\d+$"^^ . "BIOZIL" . "chemsynthesis" . . . . . "bgee.family" . "fungi" . "tanja.bekhuis@tcbinfosci.com" . . "http://www.w3.org/ns/prov#$1"^^ . "FDB002100"^^ . "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" . . . . . "sequence annotation" . . "gene" . "false"^^ . . . "http://cgsc.biology.yale.edu/Site.php?ID="^^ . . "RelatedPerson"^^ . . . . "11"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Season"^^ . . . "^[0-9]+$"^^ . . . . . . . "^(LCL|LDC|ES|LSC|LPC)-\\d+$"^^ . "ChEBI Integrated Role Ontology" . . "http://arabidopsis.info/StockInfo?NASC_id=$1"^^ . "KEGG Environ" . . . . "false"^^ . . . . . . "Causation"^^ . . . "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG"^^ . "chembl" . "state thermodynamic" . . . "Molecular Interactions Controlled Vocabulary" . . "0376"^^ . . . . . . . "Allan Peter Davis" . . . "rna" . "experimental measurement" . . . . . . . . . . "36"^^ . . . "EB0170"^^ . . _:Naac503db96f34f7cace624350a91ea26 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . "chemical" . . "molecular" . . "ComplexPortal" . . . . . . . . "false"^^ . . . . "obo" . "environmental science" . . . "false"^^ . . "CP0041613"^^ . "http://agroportal.lirmm.fr/ontologies/$1" . . "https://civicdb.org/links/variant/$1"^^ . . "BRENDA Ligand" . "climate zone" . . "genome" . . . "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage."^^ . . "false"^^ . . "metatlas.metabolite" . "https://pubchem.ncbi.nlm.nih.gov/cell/"^^ . . . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"^^ . "false"^^ . "Taxonomy in DEIMS SDR"^^ . . . . . . . . . . . "http://purl.obolibrary.org/obo/DDPHENO_$1"^^ . "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/"^^ . . "ND50028"^^ . "Symposium"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Storm"^^ . . "^\\d{7}$"^^ . "0000001"^^ . . . . "sweet.phgt" . "^\\d{7}$"^^ . "food" . "http://addictovocab.org/ADDICTO_"^^ . . "^login|no_login$"^^ . . "http://sweetontology.net/state/$1"^^ . . . . . . . "000009"^^ . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Units"^^ . . . . . . "^(5?)\\d{7}$"^^ . "gene" . "Geförderte Projekte Informationssystem (GEPRIS) is a bilingual (German/English) database of funding measures administered by the Deutsche Forschungsgemeinschaft (DFG)."^^ . "virus" . . . "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms."^^ . "Molecular Interaction Database" . . . . . . . . "SABIO-RK Kinetic Record" . . . . . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"^^ . "SWEET Ontology Property Pressure" . "http://sweetontology.net/stateRoleChemical/$1"^^ . . . . "0010039"^^ . . . . . . . "GR_PROTEIN" . "intact" . "^[A-Za-z0-9_-]*$"^^ . "expression data" . . . "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics"^^ . . . "Data Model Language Controlled Vocabulary" . "quality" . . "iedb.assay" . "Descriptive Ontology for Linguistic and Cognitive Engineering" . . "false"^^ . . . . . "1900"^^ . "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species."^^ . . . "^[0-9]+$"^^ . . "^\\d+$"^^ . _:Na3ea6a7450f7448b9623c4a74ef0cb0e . . . "Fiona M McCarthy" . . "http://aims.fao.org/aos/agrovoc/c_$1"^^ . . "http://purl.obolibrary.org/obo/CTENO_$1"^^ . . "NCBIGene" . "Metabolomics Workbench Metabolite Database" . . "anatomy" . "biology" . "physical" . . . "family and domain databases" . . "StreptomeDB" . "https://pypi.org/project/$1"^^ . "ACH-000001"^^ . "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=$1"^^ . . . . "behavior" . . . . "ontology" . . . . "imgt.hla" . . . . "AbyssopelagicZone"^^ . . . "false"^^ . . "^\\d{7}$"^^ . "false"^^ . . "12dgr161"^^ . . . . . . . . . "society" . . "health/disease" . . . . "http://www.jcvi.org/charprotdb/index.cgi/view/$1"^^ . . . "rr@uga.edu" . . "Protein covalent bond" . . . . . "SWEET Ontology Phenomena Geologic Fault" . . "false"^^ . . . "^\\d+$"^^ . "Processing"^^ . . "https://vocabularies.cessda.eu/vocabulary/CountryNamesAndCodes?lang=en#code_$1"^^ . . "OeAI Thesaurus - Cultural Time Periods" . "BiochemicalState"^^ . "cosmic" . . "Patricia Siguier" . . "82"^^ . "structure" . . . "Heather Piwowar" . "^\\d{4,}((_[asx])?_at)?$"^^ . . . "LinkedIn personal profile ID" . . . "false"^^ . . . . . "true"^^ . "sd" . . "insdc.gca" . "cognition" . . . . "medicine" . "H-InvDb Transcript" . . . . . . . "false"^^ . "Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases."^^ . . . "1426686"^^ . . "https://pdc.cancer.gov/pdc/study/"^^ . . . . "Semantically-Interlinked Online Communities Actions Ontology" . "109082"^^ . . . . "Dictybase Gene" . . . . . "ecology" . . . . . . "false"^^ . . . "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins."^^ . "software engineering" . . "273"^^ . . . . . "sopropcou" . "Agent"^^ . . "^\\d+\\.\\d+$"^^ . . "https://caps.ncbs.res.in/pass2.8/?q=superfamily/$1"^^ . . . "nrfc" . . . "research" . . . "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells."^^ . "markerdb" . "Johannes B. Goll" . . "https://schema.coypu.org/ta#"^^ . "elisa-kits" . . . . "false"^^ . . . . . "https://vocabularies.cessda.eu/vocabulary/AggregationMethod?lang=en#code_$1"^^ . . "^[0-9a-z]{24,24}$"^^ . . "bolton@ncbi.nlm.nih.gov" . . . . . . . . . "1374"^^ . "false"^^ . "eo" . "NCBI Data Repository Service" . "genome/gene" . . . "false"^^ . "https://www.pharmvar.org/gene/"^^ . "fig|306254.1.peg.183"^^ . "NASC code" . "merops.family" . . . . "RGD" . . "http://www.daml.org/2003/01/periodictable/PeriodicTable#"^^ . . "Kai Blin" . . . "false"^^ . "http://purl.org/phylo/treebase/phylows/study/$1?format=html"^^ . . . "infectious disease medicine" . "https://biodivportal.gfbio.org" . "small molecule" . "4005"^^ . . . "https://ensaiosclinicos.gov.br/rg/"^^ . . . "medlineplus" . . . . "hbvar" . "omop" . "DataCite Contributor Type" . . . "ontology" . . . "The Science Data Discovery Ontology (sddo) is being developed to provide a semantic foundation for the discovery of information managed by NASA's Science Mission Directorate. This information spans many scientific disciplines, fields and subfields, including heliophysics, earth science, planetary science, astrophysics, biology, astrobiology, and physical science. [from repository]"^^ . "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations."^^ . "^\\D{4}\\d{6}(\\-\\D{2})?$"^^ . . . . . . . "false"^^ . . "false"^^ . . "https://w3id.org/sulo/"^^ . . "imgt.ligm" . "TAIR Locus" . "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:"^^ . . . "lipidmaps" . . "4019477"^^ . "^[A-Z-a-z0-9]+$"^^ . . . . . "^\\w\\d{4}\\w\\d{2}(\\-[35])?$"^^ . "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"^^ . "https://entomology.ca.uky.edu/content/$1"^^ . . . "false"^^ . . "transcriptomics" . . . . . . . "0001927"^^ . . "taxon rank" . "Michael Hucka" . "state role geographic" . "Office of Scientific and Technical Information (OSTI)" . "Canadian Drug Product Database" . . . "false"^^ . . . . . . "catalogs" . "http://vocab.getty.edu/page/ia/"^^ . "animal" . "None"^^ . . "true"^^ . . . . _:N4b84693348df461993b954b9ae2f5dfb "jamsden@us.ibm.com" . "landreshdz@gmail.com" . . . . . "StudyProposal"^^ . "anatomy" . . . . . . . . . . "Units of measurement ontology" . . . . . . "false"^^ . "http://www.nematodes.org/nembase4/cluster.php?cluster=$1"^^ . . "^\\d+$"^^ . . "false"^^ . "http://purl.obolibrary.org/obo/CLAO_$1"^^ . "https://www.ebi.ac.uk/arrayexpress/experiments/$1"^^ . "https://purl.org/fidbaudigital/subjects#"^^ . . "http://search.sisuproject.fi/#/variant/$1"^^ . "pruitt@ncbi.nlm.nih.gov" . "drug interaction" . . "Sunflower Ontology" . . "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . . . . . . "chemical biology" . . . "false"^^ . . . . . "Health Canada Natural Product Number" . . . . . "sorepts" . . "5"^^ . . "^rs\\d+$"^^ . "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes."^^ . . . . "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID="^^ . . . . "nfdi4ing" . "https://brickschema.org/schema/Brick#"^^ . "soreagb" . "https://gnss-metadata.eu/MOID/"^^ . . . "false"^^ . "false"^^ . . . . . . . . . "http://sweetontology.net/phenPlanetClimate/"^^ . "nmr" . . . . . . "antibodyregistry" . "false"^^ . "J0705A10"^^ . "Identifiers correspond to curated multigene families in the human genome from the Phylogenomic Analysis of Human Genome (PAHG) database, focusing on evolutionary relationships and gene duplication events across vertebrates."^^ . . . . . . "interaction/pathway" . "https://www.cellosaurus.org/CVCL_"^^ . . . . . "PubMed Central" . "ontology" . . . "HGNC gene family" . . "^CL\\d+$"^^ . "false"^^ . "false"^^ . "fish.aoe" . . "Donna R. Maglott" . . . . "Animate"^^ . "An ontology of qualifications, distinctions, and certifications that uses the Phenotype And Trait Ontology term quality (PATO:0000001) as a root term."^^ . . . . . "ontology" . "false"^^ . . . . . "plant phenotypes and traits" . "59"^^ . . "health/disease" . . "bibliometrics" . "organism" . . "sweet.reao" . . "Horizon Discovery cell line collection" . "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer."^^ . "sophoc" . . "agriculture" . . . . . . . "false"^^ . "https://protists.ensembl.org/id/$1"^^ . "http://purl.org/ppeo/PPEO.owl#$1"^^ . "dna" . . "The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world."^^ . "http://www.innatedb.ca/getGeneCard.do?id=$1"^^ . "Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan."^^ . "buccal_gland"^^ . "rna-binding protein" . "NONCODE v4 Gene" . "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc."^^ . . . "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession="^^ . . "https://www.ipni.org/a/$1"^^ . "false"^^ . "https://doi.org/"^^ . "MC" . . "The Building Topology Ontology (BOT) is a minimal ontology for describing the core topological concepts of a building."^^ . "pharmacogenomics" . . "false"^^ . "gene" . . . . . . "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"^^ . . "http://purl.obolibrary.org/obo/AfPO_$1"^^ . . "http://edamontology.org/topic_$1"^^ . "rna" . . . . . "deims.dataset" . . "http://sweetontology.net/matrIon/$1"^^ . . . . "http://www.bootstrep.eu/ontology/GRO#$1"^^ . . "https://proteininformationresource.org/cgi-bin/resid?id="^^ . "nfdi4chem" . . "0000519"^^ . . . . "Charles Ettensohn" . "http://purl.obolibrary.org/obo/SYMP_"^^ . "false"^^ . . . "Colleen Xu" . . . "peptides" . . . . "DataCite Name Type" . . . "ApiDB_PlasmoDB" . . . "SWEET Ontology Phenomena Reaction" . "16129"^^ . . "obo" . "http://sweetontology.net/stateSpaceConfiguration/"^^ . "subject agnostic" . . "The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns."^^ . "biomedical science" . "dcat" . "f665230-5267"^^ . "http://degradome.uniovi.es/cgi-bin/protease/"^^ . . . "http://rs.tdwg.org/format/$1"^^ . . "Job.Dekker@umassmed.edu" . "https://bioregistry.io/registry/"^^ . . "false"^^ . "Dr. Duke's Phytochemical and Ethnobotanical Databases chemical" . _:Naa4d168b673348bba0a26533d3141b56 "SaidFathalla" . "http://terminology.lido-schema.org/actor_type/"^^ . . . "culture" . . . . . "http://www.opengis.net/ont/geosparql#$1"^^ . . "omiabis" . "developmental biology" . "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities."^^ . "sorepsl" . . . . . . . . _:N4b8f24d0cf534bcdb108dc806821bdf7 "Tom Brennan" . . . . . " Björn Schembera" . "GR:0080039"^^ . . "Toby J Gibson" . . . "Linda Reha-Krantz" . "YOR172W_571.0"^^ . "iso15926" . "protein trap" . "ontology" . . . "computational biology" . . "chenyangnutrition@gmail.com" . . "phismith@buffalo.edu" . . . . . . . "false"^^ . "NIST Chemistry WebBook" . "^\\S+$"^^ . . . "genetic variation" . "health science" . "wave" . . . "^\\d+$"^^ . "102l"^^ . . "http://sweetontology.net/realm/"^^ . . . "organism-specific databases" . "false"^^ . . "^LDPC\\d+$"^^ . . . . "experimental measurement" . . . . "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily."^^ . "^DataSet_[0-9]+$"^^ . . "sweet.procw" . . . . "api" . . "false"^^ . "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:"^^ . . . "sequence" . . . . . . . . . . "https://mamoura.eci.ufmg.br/tematres/vocab/index.php?tema=$1"^^ . "genome/gene" . "sequencing assay" . "sharkipedia.species" . . . . "MoDALIA Ontology" . . . . . . "informatics" . . . . "http://purl.obolibrary.org/obo/ATO_"^^ . "false"^^ . . "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1"^^ . . "false"^^ . . . . . . . . "engineering" . . . . . . "enzyme and pathway databases" . "0000947"^^ . "false"^^ . . "PNEUPAN000001000"^^ . . . . . . . "signaling" . "false"^^ . "http://data.europa.eu/esco/isco/$1"^^ . . "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1"^^ . "Hymenoptera Anatomy Reference" . . . . . . . "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . . "Semantically-Interlinked Online Communities Services Ontology - SWAN Mapping" . "taxonomy" . "true"^^ . . . . "ocean feature" . "coypu.gta" . "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast)."^^ . "food" . . . . . . "The Data Quality Vocabulary (DQV) is seen as an extension to DCAT to cover the quality of the data, how frequently is it updated, whether it accepts user corrections, persistence commitments etc. When used by publishers, this vocabulary will foster trust in the data amongst developers."^^ . . "Hannah Dörpholz" . . . "shah.tanay2@northeastern.edu" . "physics" . . . . "http://cor.esipfed.org/ont/earthcube/SFO_"^^ . . . "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id="^^ . "http://data.europa.eu/esco/isco/"^^ . . "life sciences, biology" . "family and domain databases" . . "cameo" . . "https://pharmacodb.ca/datasets/$1"^^ . _:N5027f7f573694a18bf84253ea60826c0 "Matt Berriman" . . . "http://sweetontology.net/humanKnowledgeDomain/"^^ . . "https://civicdb.org/links/drugs/"^^ . . . "sbml.level-3.version-2"^^ . "data analysis" . . . . "SWEET Ontology Material Industrial" . "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract."^^ . . . . . . . "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."^^ . "MCDS_L_0000000001"^^ . "false"^^ . . . "InTextReferencePointer"^^ . "false"^^ . "genome/gene" . . . . . . . "immune system" . _:Ne7c43a19806d44c58502b71cb6887b8d . "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements."^^ . "dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and haplotype frequencies of over 90 populations worldwide, as well as clinical datasets on nematopoietic stem cell transplantation, and insulin dependant diabetes mellitus (IDDM), Rheumatoid Arthritis (RA), Narcolepsy and Spondyloarthropathy. All clinical datasets housed at the dbMHC provide access to genotypic and phenotypic data on anonimyzed samples with aggregate query functions, and complete download capability."^^ . . . . . . . "drugcentral" . "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract)."^^ . "ontology" . . . . "protein" . . . . . "murphyte@ncbi.nlm.nih.gov" . "false"^^ . "false"^^ . . "iot" . . "http://multicellds.org/MultiCellDB/"^^ . . "^\\d+$"^^ . "https://suprabank.org/solvents/"^^ . . "false"^^ . . . . . "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"^^ . "false"^^ . "sopropdife" . "A vendor of antibodies and other biologics"^^ . "^\\d{7}$"^^ . . . . "http://purl.obolibrary.org/obo/OMRSE_$1"^^ . . . . "OBOE Standard" . . "WikiPathways Types" . "https://cbcb.cdutcm.edu.cn/AGD/plant/details/?id="^^ . "reactions" . "The Audio Commons Ontology has been created in the context of the European project [Audio Commons](https://www.audiocommons.org/), which were aimed at favouring sharing and reuse of audio content (both of musical and non-musical nature), specially using [Creative Commons](https://creativecommons.org/) licenses.\n\nIt is designed specifically to integrate access to multiple heterogeneously structured audio content providers. In particular the following ones have been considered in the project:\n- [Freesound](https://freesound.org/), a collaborative database of Creative Commons Licensed sounds;\n- [Jamendo](https://www.jamendo.com/), a music website for independent artists;\n- [Europeana Sounds](https://www.eusounds.eu/), a European project collecting and sharing data from several archives of sounds and sound-related media;\n- [Internet Archive](https://archive.org/), a non-profit library of millions of freely accessible media contents.\n\n### The base model\n
![A diagram showing the entities Work, Expression, Manifestation, Item](./img/FRBR-Group-1-entities-and-basic-relations.svg.png)
\nThe Audio Commons ontology is based on [Functional Requirements for Bibliographic Records (FRBR)](https://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records), a bibliographic model designed for user tasks of retrieval and access in online library catalogues and bibliographic databases. FRBR distinguish the products of intellectual or artistic endeavor in four main classes: work, expression, manifestation, item. It is available as RDF vocabulary at https://vocab.org/frbr/core. For further information on FRBR, check the [standard](https://repository.ifla.org/handle/123456789/811).\n\nAnother important model related to audio is the [Music Ontology](http://musicontology.com/), which is also based on the FRBR model. Our ontology is more generic than the Music Ontology but is interoperable with it to support the specificities of music-related audio content.\n\nThe Audio Commons ontology works also in conjunction with\n- [Dublin Core](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/) for basic metadata,\n- [EBU Core](https://www.ebu.ch/metadata/ontologies/ebucore/) for technical properties of audio files,\n- [SKOS](https://www.w3.org/TR/skos-primer/) to support taxonomic classifications,\n- [Creative Commons Licensing schema](https://creativecommons.org/ns) to represent media licensing,\n- [Event ontology](http://motools.sf.net/event/event.html) for the formalisation of events,\n- [Audio Features Ontology](https://w3id.org/afo/onto/) for the characterisation of audio features.\n\n### Ontology overview\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Skeleton.png)\n\nThe figure above shows the most general classes and properties of the Audio Commons ontology and their relationship with classes of the FRBR and the Music Ontology:\n- **`ac:AudioExpression`**, the specific intellectual or artistic form that a work takes each time it is _realised_, in the audio domain, e.g., the recording or synthesis of music or sounds;\n- **`ac:AudioManifestation`**, the physical embodiment of an audio expression, e.g., a musical track, a sound, an album; \n- **`ac:AudioItem`**, a single exemplar of an audio manifestation, e.g., a copy of a CD or a specific media file.\n\nThe FRBR class Work, representing a distinct intellectual or artistic creation on a more conceptual level, has not been specialised in Audio Commons.\n\nThe Audio Commons ontology provides a generic schema for audio classification through the property **`ac:audioCategory`** that associates any audio expression, manifestation, or item to some generic **`ac:AudioCategory`**. These two terms can be specialised to provide spefic categorisations.\n\n### Manifestations: audio clips and collections\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Manifestation.png)\n\nThe figure above shows classes and properties related to audio manifestations. An instance of **`ac:AudioClip`**, a subclass of `ac:AudioManifestation`, is any audio segment that has been published in some form or uploaded for consumption, for example, a track in a music label's repository or a sound in an audio repository, library or archive.\n\nThe class **`ac:AudioCollection`**, another subclass of `ac:AudioManifestation`, is used to represent collections of audio clips. The class **`ac:AudioCollectionNode`** is used to represent single nodes of a collection, offering local information like the index in the collection and pointers to previous and next nodes. The separation between the collection node and its actual content (e.g., an `ac:AudioClip`) permits the same content to be shared in multiple collections.\n\nThe content of each node of a collection is not limited to an `ac:AudioClip`, but may contain any `ac:AudioManifestation`. Collections can thus contain other collections to support specific cases, e.g. a mapping to the Music Ontology model where an `mo:Release` can contain multiple `mo:Record`(s) that can in turn contain multiple `mo:Track`(s).\n### Items: audio files\n![A diagram showing ac:Item class and related class and properties](./img/AC-Ontology-Item.png)\n\nAn `ac:AudioItem` is a concrete exemplar of an audio manifestation. In our domain, the main exemplars are the actual audio files. \n\nThe corresponding class **`ac:AudioFile`** is a subclass of `ac:AudioItem`. It is subclass of `ebu:MediaResource` too and the corresponging properties of EBU Core can be used to describe the file (e.g., `ebu:hasEncodingFormat`, `ebu:fileSize`).\n\n### Expressions: audio signals\n![A diagram showing ac:Expression class and related class and properties](./img/AC-Ontology-Expression.png)\n\nWhile `ac:AudioFile` represents a concrete file encoded in a certain format, **`ac:DigitalSignal`** is the representation of the corresponding digital signal. `ac:DigitalSignal` is a subclass of `ac:MusicalExpression`. \n\nThe data properties `ac:sampleRate`, `ac:bitsPerSample`, and `ac:channels`, associate a signal with its basic features specific to digital representations.\n\nThe property `ac:publicationOf` can be used to associate an `ac:AudioClip` with the corresponding digital signal. The property `ac:encodes` instead, associates an `ac:AudioFile` with the encoded digital signal.\n\n### Events: recording/syntesis\n![A diagram showing ac:SignalProduction class and related class and properties!](./img/AC-Ontology-SignalProduction.png)\n\nThe description of temporal events is crucial to formalise and document transitions in the workflow of audio production and publication. The class `event:Event` of the Event Ontology is thus specialised for specific actions that are interesting for the audio domain.\n\nUsing the `event:Event` class, details of an event such as its location in time and space, its factor and its products may be explicitly described. Moreover, events can be composed using the property `event:sub_event`, to build complex events.\n\nThe class `ac:SignalProduction` represents the act of producing a `ac:Signal`, which could be either an `ac:AnalogSignal` or a `ac:DigitalSignal`. This is complemented by **`ac:Recording`**, representing the process of recording a sound (`ac:Sound`) or the product of **`ac:Synthesis`**, in case of artificially generated sounds. \n\n### Events (continued): publication\n![A diagram showing ac:Publication class and related class and properties!](./img/AC-Ontology-Publication.png)\n\nThe event **`ac:AudioPublication`** represents the public release of a piece of work, e.g., the release of a new album by a band.\n\n### Usage Example\n![A diagram showing an example of ontology usage!](./img/AC_Example-AudioClip.png)\n\nThe figure above shows an example of use of the Audio Commons ontology to represent a sound from the Freesound database. For simplicity only the classes `ac:AudioClip`, `ac:AudioFile`, and `ac:AudioCategory` are used in this case."^^ . . . "PdumDv" . . . "true"^^ . . "http://purl.obolibrary.org/obo/MRO_"^^ . . . . . "life science" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Fog"^^ . . . . "^PED\\d{5}$"^^ . . "Molecule role (INOH Protein name/family name ontology)" . . . "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information."^^ . . . . . . "atmosphere fog" . . . "https://istransbase.scbdd.com/database/trans/$1"^^ . "phylogenomic databases" . . . . "protein" . "http://vivoweb.org/ontology/core#$1"^^ . . . "false"^^ . . . "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code="^^ . . "https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem=$1"^^ . . . "immunology" . . . . . . . . . . . "genetics" . "biopax" . "si.prefix" . "51"^^ . . . "earth sciences" . "AbyssalHill"^^ . "ontology" . "The Human Metabolome Gene/Protein Database (MGP) of metabolome-related genes and proteins contains data for over 7300 genes and over 15,500 proteins. [from homepage]"^^ . . . "false"^^ . . . "^\\w+$"^^ . "pmap.substratedb" . "anatomy" . . "00005254"^^ . "A0001"^^ . "PesticideInfo chemical ID" . . . "Epidemiology Ontology" . . . . "true"^^ . "MMP02954345.1"^^ . "Biological Expression Language" . . . "s4ehaw" . "https://www.dbgi.org/earth_metabolome_ontology/#$1"^^ . . "Controlled vocabulary for the classification of the theme for a mobility dataset."^^ . . "5fce9b7300001250"^^ . "small molecule" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Boundary Layer"^^ . "protein" . "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)."^^ . "https://bio.tools/"^^ . . . . . . "ontology" . "phenotype" . . . . "nfdi4ing" . . . . . . "https://vocabs.acdh.oeaw.ac.at/oefosdisciplines/"^^ . . . . . "http://tolweb.org/$1"^^ . . . "https://www.echa.europa.eu/information-on-chemicals/ec-inventory/-/dislist/details/"^^ . . . . . . "geno" . . . "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources."^^ . . "clinical data" . . . . . "https://www.ebi.ac.uk/metagenomics/proteins/$1"^^ . . . . "101"^^ . . "ZDB-GENE-041118-11"^^ . "86"^^ . "false"^^ . "https://www.ncbi.nlm.nih.gov/gtr/labs/$1"^^ . . "false"^^ . "https://www.nwo.nl/en/projects/"^^ . . . . . . . . "state role impact" . "ontology" . "WGS84 Geo Positioning" . . "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO)."^^ . "structure" . "hsdb" . . "SWEET Ontology State Space Scale" . "http://rna.rega.kuleuven.be/rnamods/rnashow.pl?$1"^^ . "ontology" . . "The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references."^^ . . _:N8299cc1e3d6d44d0a2d3a4b2028ea62f "Terue Takatsuki" . "http://sweetontology.net/procWave/"^^ . . . . . "ena" . . . "https://catalog.integbio.jp/dbcatalog/en/record/$1" . "Ribocentre" . . . . "https://reactome.org/content/detail/$1"^^ . . "SWEET Ontology Property Quantity" . . . . . . "false"^^ . "Michal Linial" . "europa.dcf" . "false"^^ . "computer science" . . . . . "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information."^^ . "https://www.ncbi.nlm.nih.gov/probe/?term="^^ . . "eggnog" . "biomedical science" . "The \"Codex General Standard for Food Additives\" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."^^ . . . "https://www.npmjs.com/package/"^^ . "g.gkoutos@bham.ac.uk" . "false"^^ . "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor."^^ . . . . "Beilstein" . . . "false"^^ . . . . "https://purl.infoflora.ch/concept/ifloprop/"^^ . "media type" . . "^\\w{1,2}\\d+$"^^ . . . . . . "^PAp[0-9]{8}$"^^ . "Andrea Gaedigk" . "https://cordis.europa.eu/project/rcn/$1_en.html"^^ . "24801"^^ . . . . . "00000532"^^ . "false"^^ . . . "MeSH 2013" . . . . . . . . . . "http://sabiork.h-its.org/newSearch?q=ecnumber:"^^ . . . "iECABU_c1320"^^ . . "e-Rad researcher number" . "VCell Published Models" . . . "Absorptance"^^ . . "ontology" . . "InstrumentScientist"^^ . . "Encyclopedia of Life Schema" . "A version of the Materials Data Vocabulary structured as Simple Knowledge Organization System (SKOS). The XML was originally created by the TemaTres software. This vocabulary describes the applicability to material science of records in the NIST Materials Resource Registry (NMRR - https://materials.registry.nist.gov/). The NMRR allows for the registration of materials resources, bridging the gap between existing resources and the end users. The NMRR functions as a node in a federated system, making the registered information available for research to the materials community. This is being developed at the National Institute of Standards and Technology and is made available to solicit comments from the Material Science community. (An Excel version of the file is also included in the distributions for ease of use.) Please cite this resource as: Medina-Smith, Andrea; Becker, Chandler (2017), Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary , National Institute of Standards and Technology, https://doi.org/10.18434/T4/1435037"^^ . . . "gene group" . "oci" . . . "https://cropontology.org/rdf/CO_324:"^^ . _:Nbf4032d257f24463a40c44f4ef344d37 "Caty Chung" . "https://ogp.me/ns#"^^ . . "Banco de Celulas do Rio de Janeiro" . . "Forum on Information Standards in Heritage - Archaeological Sciences Thesaurus" . . "http://cor.esipfed.org/ont/earthcube/SFO_$1"^^ . "Bio-MINDER Tissue Database" . . . "co_323" . . . . . "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"^^ . . . . . "ecology" . . . "http://func.mshri.on.ca/yeast/genes/list_functional_scores/"^^ . . "kim.amb" . . "ThermodynamicState"^^ . . "system complexity" . . . "http://purl.jp/bio/4/id/$1"^^ . . . . . . . . "http://cor.esipfed.org/ont/earthcube/srt_"^^ . . "dsonensh@odu.edu" . "country" . . . . . . . . . "sequence" . "SHACL in SHACL" . "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use." . "tissue" . . "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean"^^ . _:N099a1c32f93f4481a2e5d84d9be8997e . "http://purl.org/spar/scoro/$1"^^ . . . "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . "true"^^ . . "ssrn.author" . "https://ssrn.com/author="^^ . . . "false"^^ . "Richard H. Scheuermann" . . "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$1"^^ . . . . . "false"^^ . . . . "http://purl.obolibrary.org/obo/NIF_CELL_"^^ . . . . "somaae" . "https://search.dalia.education/communities/$1"^^ . . "^LBCTR\\d+$"^^ . . . . . "Development of crop-specific trait ontologies including the Chickpea Ontology began in 2008 as part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . . . . . . . . . "anzctr" . . "obo" . "The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR)."^^ . . "ontology" . . "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms."^^ . . . . . . . . "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)"^^ . "sweet.propr" . . . "life sciences, biology" . "uniprot/swiss-prot" . . . "^\\d+$"^^ . "https://pubchem.ncbi.nlm.nih.gov/element/"^^ . "https://publons.com/researcher/$1"^^ . . . "Rosemary Shrestha" . "http://purl.obolibrary.org/obo/ONTONEO_$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Solid"^^ . "2555646"^^ . "Time Method" . . . "digitrubber" . _:N1561db16031543ee8334355d10be20b2 . "ruili.huang@nih.gov" . "sébastien Aubourg" . . . "false"^^ . "http://www.w3.org/ns/sosa/$1"^^ . . "1050"^^ . "https://w3id.org/bot#$1"^^ . "Vir-Mir db" . . . "dc.elements" . . . . . . . "mr"^^ . . "An ontology to represent the enhancement of building data throughout the construction lifecycle stages"^^ . . "^ACH-\\d+$"^^ . "^\\d{7}$"^^ . . . . "^\\d+$"^^ . "saref.water" . "interaction/pathway" . . "pass2" . . . . "MycoBank" . _:N7dd62a66503d43df928f7b7aca831132 "Alsayed Algergawy" . "https://lincs.hms.harvard.edu/db/sm/"^^ . "3d structure" . "fcsfree" . . . . . . "Catalog of purchasable reagents and building blocks"^^ . . "fairsharing" . . . . "emi" . . . . "^\\d+$"^^ . "events" . . . . . . "Be"^^ . . . . . . . "https://permalink.obvsg.at/$1"^^ . "true"^^ . "http://cegg.unige.ch/orthodb/results?searchtext="^^ . "0004"^^ . "image/movie" . . . . . "An ontology of predicates for actions in SIOC"^^ . . . . . . "Conserved Domain Database" . . "https://www.arraymap.org/pgx:"^^ . . . . "false"^^ . "plant phenotypes and traits" . "chemical structure" . . "skip" . . "rna" . . "CHEBIID" . . "bibliometrics" . . "fid move" . . "begdb" . . "subject agnostic" . "khamar.he@northeastern.edu" . "group_of_persons"^^ . . "fluid dynamics" . "Lars Eisen" . . . "http://phenol-explorer.eu/foods/"^^ . . "Dewey Decimal Classification" . . . . . "hemonc" . . "https://saref.etsi.org/saref4bldg/$1"^^ . . "KEGG Reaction" . "topics" . . "MITE0000001"^^ . . . . . . . . "InfoSecSoS - Ontology for Information Security Management in Systems-of-Systems"^^ . . . . "https://iconclass.org/$1"^^ . . . . . "https://deims.org/taxonomy/term/"^^ . . . "http://dase.cs.ksu.edu/ontology/food-traceability#"^^ . "174"^^ . "CutDB" . . "aquaculture" . "false"^^ . "dataplant" . . . . "data identity and mapping" . . "http://purl.obolibrary.org/obo/OMIABIS_$1"^^ . . . "M58335"^^ . . . . . . . "false"^^ . "C0020004/4992"^^ . . "https://www.aapc.com/codes/cpt-codes/"^^ . "https://hub.docker.com/u/$1"^^ . . "genbank" . . . . . . . "state visibility" . . . "chemical in the fluorescent substances database"^^ . . "false"^^ . . . . . "datanator.metabolite" . "https://w3id.org/kim/license/$1"^^ . . "shnex" . . . . "An identifier for an organization"^^ . . . . "Metabolomics Standards Initiative Ontology" . . "http://www.wikigenes.org/e/gene/e/$1.html"^^ . "cell" . . "http://sweetontology.net/propOrdinal/"^^ . . . . "Markus Kühbach" . . . . "obo" . . "anatomy" . . . . "panther.family" . . "sophsyc" . . . . "^\\d+$"^^ . . . . . "neuroscience" . . "http://purl.obolibrary.org/obo/GAZ_$1"^^ . "ontology" . . "leafsnap" . . "https://whgazetteer.org/places/$1/portal"^^ . . "https://www.ncbi.nlm.nih.gov/gtr/conditions/"^^ . . "vcell"^^ . "TOKU-E Cell-culture Database" . . . . . . . "protein" . . "classification" . "brc.genome" . . "alex.skrenchuk@stanford.edu" . "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$"^^ . . "dc_cl" . "^[0-9]{10}$"^^ . . . "MEDIGUE Claudine" . . . "https://cellxgene.cziscience.com/collections/"^^ . "chemical structure" . "false"^^ . "Audubon Core uses the terms ac:variant and ac:variantLiteral to provide information about the size, extent, and availability of the Service Access Point of a media item. This controlled vocabulary provides values for those terms."^^ . "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1"^^ . "pharmacy" . "Gene Regulation Ontology" . . . . . "Database containing promotor sequences found in Saccharomyces cerevisiae."^^ . . . "784"^^ . "https://fairsharing.org/users/$1"^^ . . "ontology" . "603903"^^ . "http://purl.obolibrary.org/obo/GENO_"^^ . . "ssbd.project" . . "Provenance Information for Materials Science Ontology - Data Analysis Lifecycle Module" . "enzyme" . . "https://bioregistry.io/tokue:"^^ . . "https://bdsc.indiana.edu/stocks/"^^ . . . . . "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)."^^ . . "protein family/group databases" . "^\\d{7}$"^^ . . . . "https://saref.etsi.org/saref4inma/"^^ . "Industrial Foundational Classes" . "disease" . . . "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank."^^ . . . "false"^^ . . "metnetdb" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Frequency"^^ . . "evolution" . . "false"^^ . "organelle" . . "neuronames" . . . "Observation"^^ . . "An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date."^^ . . . . "anatomy" . . . . . . "^\\d{7}$"^^ . . "^[A-Za-z0-9]+$"^^ . "^\\d+$"^^ . . "^\\d+$"^^ . . . . . "^[A-Z]{1,3}-\\d{4}-(19|20)\\d\\d$"^^ . . . . . "protein" . . . . "^\\d+$"^^ . . . "enzyme" . "ddi.numerictype" . . . "Includes a typology of data sources."^^ . . "https://www.kew.org/data/grasses-db/www/"^^ . "^([A-Z]+)?\\d+(\\.\\d+)?$"^^ . "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid="^^ . . . . "jones@nceas.ucsb.edu" . "biology" . . . . . . . . . . "Sebastian Böhm" . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena."^^ . "drug" . "http://purl.obolibrary.org/obo/ORNASEQ_$1"^^ . . . . "http://www.ribocirc.com/rna_detail.php?circ_id="^^ . "Fission Yeast Phenotype Ontology" . . . . . . "dna" . . "MSH2010_2010_02_22" . "false"^^ . . . "false"^^ . . "Connection"^^ . "http://purl.bioontology.org/ontology/NDDF/$1"^^ . . "https://chemkg.github.io/chemrof/"^^ . . . "false"^^ . . . "ontology" . . . . "ontology" . . "phenomena" . . . . "http://sweetontology.net/matrMicrobiota/$1"^^ . . . . . "proteomics" . "c0001"^^ . . "Website with general information about Arabidopsis and functionalities such as a genomic viewer"^^ . . . "https://medical-data-models.org/forms/"^^ . . . . . "sequence alignment" . "https://www.biocatalogue.org/services/$1"^^ . . . "https://omia.org/variant/omia.variant:$1"^^ . "small molecule" . "AffyProbeset"^^ . . . . . . "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families."^^ . "health science" . "NCT" . . "nfdi4ing" . "Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]"^^ . "protein" . . "1691753"^^ . "ReviewVersion"^^ . "https://ordb.biotech.ttu.edu/OdorDB/Data/"^^ . . "medicine" . "phenomena" . . "Prefix.cc" . . . "Citation Counting and Context Characterisation Ontology" . "https://bioregistry.io/ddc:"^^ . "00000005"^^ . . . "http://sweetontology.net/matrOrganicCompound/"^^ . . . . . "prima" . . . _:Na3ea6a7450f7448b9623c4a74ef0cb0e "MedDRA MSSO" . . . . "earth sciences" . "Ontology for Parasite LifeCycle" . . "http://bigg.ucsd.edu/models/universal/reactions/"^^ . . "P136"^^ . . "diagnosis" . . . "https://www.wormbase.org/get?name=$1"^^ . "F45.21"^^ . . . "https://www.drugbank.ca/categories/$1"^^ . "true"^^ . . . "Resource for the community to store, retrieve, search, reference, and reuse CellML models."^^ . . "mesh.2013" . "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research."^^ . "http://www.ontology-of-units-of-measure.org/resource/om-2/$1"^^ . . . . . "unirule" . . . . . . . "01001"^^ . . . . . . . . "KYinno cell lines" . . . "structure" . . . . "oostt" . "https://lobid.org/gnd/"^^ . . "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods."^^ . . . . . "Plant Transcription Factor Database" . "http://sweetontology.net/realmGeolContinental/$1"^^ . . . . "http://purl.obolibrary.org/obo/HEPRO_"^^ . . . . . . "SNOMEDCTCT_2019_03_01" . . . . . . "false"^^ . . "study design" . "false"^^ . . . "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)"^^ . . "http://id.nlm.nih.gov/mesh/vocab#$1"^^ . "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter."^^ . . "sweet.phod" . . . "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_"^^ . . . . "false"^^ . "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."^^ . "Documentation of the Phenoscape Curation Workflow"^^ . "false"^^ . "Building Topology Ontology" . "PyPI" . "OpenAlex" . . . "sequence" . "1009107926"^^ . . "ontology" . . "Protein Structure and Stability Knowledge Base" . . "b.gyori@northeastern.edu" . "https://bioregistry.io/metaregistry/go/"^^ . "^[0-9]{1,7}$"^^ . . "Gemeinsame Normdatei" . "region" . . . "PRO Research: An ontology for describing RDM-Policies in a structured way" . "^\\d{7}$"^^ . "NCI Metathesaurus" . "Potato Ontology" . . . "cath.domain" . "^\\d+$"^^ . . "http://purl.org/dcx/lrmi-vocabs/educationalUse/"^^ . . . "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions."^^ . . "VHOG_RETIRED" . . "phs000768.v2.p1"^^ . . "Signaling Pathways Project" . "ecyano.rule" . . . "protein" . "confident.event" . "TubercuList" . . "https://omim.org/MIM:PS"^^ . . "http://purl.obolibrary.org/obo/HANCESTRO_$1"^^ . . . . "http://www.ncbi.nlm.nih.gov/clinvar/"^^ . "https://depmap.org/portal/cell_line/"^^ . . . . "Contains identifiers for genes that are part of cohesin regulated CRMs (cis-regulatory modules) from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related CRM. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information."^^ . . . . . . . "false"^^ . "iNaturalist Place" . . . . "^\\d{7}$"^^ . "sdy" . . . . "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1"^^ . . "^[A-Za-z0-9-]+$"^^ . "SWEET Ontology Relationships Mathematical" . . . _:Nbc7eb1b996c848b8b9f5a4918a810cdf "Pierre Sprumont" . . "rec" . "worldavatar.os" . "https://loinc.org/$1"^^ . . "protein" . . "http://purl.obolibrary.org/obo/OPMI_"^^ . . . . "gene" . . . "true"^^ . "dbvar.variants" . . " Philip Strömert" . . "sibo" . . . "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . . "The Drug-Drug Interactions Ontology" . . . "MNXR101574"^^ . "^\\d+$"^^ . . . . . . . . . . . . . "ddi.modeofcollection" . "sweet.phhy" . "nfdi4ing" . "^DP\\d{5}$"^^ . "culture" . "endlessforms.unit" . "hölzel" . . . "XML Schema Definition" . "ontology" . . . "sweet.proc" . . . _:Nca706ef04a1b4cf291b0d3e94d3ee8ca "NLM Customer Service" . . "https://terminology.tib.eu" . "Cell Line Ontology" . "http://rdfs.org/sioc/types#"^^ . "MetaboLights Compound" . . "http://sabiork.h-its.org/newSearch?q=ecnumber:$1"^^ . . . . . . . . . . "^\\d+$"^^ . "computer science" . . "false"^^ . "https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/"^^ . "0004828"^^ . "Langua aLimentaria Thesaurus" . "37"^^ . . . "genome/gene" . "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp="^^ . . . "digital planning and construction" . . "synbip.sbp" . "civil engineering" . . . . . . . . . . . . "https://osdr.nasa.gov/bio/repo/data/subjects/$1"^^ . "sweet.maae" . . . . . "lrmi.alignmenttype" . "true"^^ . "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?(-\\d+)?(#PRO_\\d+)?$"^^ . "sophatmofo" . . . . . . "NERC Vocabulary Server" . . . . . "An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes."^^ . . . . . . . "Assimilation"^^ . "hasCalculation"^^ . . . . "false"^^ . "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . . . . . . . . . . . "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf="^^ . "AURKA"^^ . . . "Access"^^ . . "https://string-db.org/cgi/network?identifier="^^ . . . . . . "gist" . . "http://swissregulon.unibas.ch/query/$1"^^ . "Peter D'Eustachio" . "^\\w\\d+$"^^ . . "https://ror.org/"^^ . . "Pierre-Yves LeBail" . "1"^^ . "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways."^^ . "http://purl.obolibrary.org/obo/ONS_$1"^^ . . . "Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments"^^ . "latitude"^^ . . "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy."^^ . . . . . . "^\\d+$"^^ . . . "http://rs.tdwg.org/dwcdoe/$1"^^ . . . . "The Woody Plant Ontology lists reference variables used for experimentations and observations on woody plants (forest trees and shrubs, and possibly fruit trees). It is an international initiative based on various communities (French, Portuguese and European). Terms are collected from various sources and organized following the Crop Ontology standard which provides harmonized variables composed by a triplet: (i) a trait, the studied character, (ii) a method, the measurement protocol and (iii) a scale, the unit of measurement or scoring scale."^^ . . "Ontology for manufacturing and logistics"^^ . . . "chemical structure" . "glycomapsdb" . "knockout" . "1001"^^ . "https://oprlm.org/proteins/"^^ . "ecosystem" . . . . . . . . "gainesville.core" . . "interaction" . . "nfdi4ing" . "electrophoresis" . "Vertebrate Breed Ontology Issue Tracker" . . "energy" . . "00000001"^^ . . "regulation" . "interaction/pathway" . . . . . "Nonribosomal Peptides Database" . "ECGOntology" . . . . "image/movie" . "GARD" . . . . "false"^^ . "http://www.daml.org/2003/01/periodictable/PeriodicTable#$1"^^ . "ontology" . . . . "91792"^^ . "hasAcceptedName"^^ . "state biological" . . . . . "cell" . . "^000\\d{5}$"^^ . . . "c"^^ . "true"^^ . . . "^\\d+$"^^ . . "http://purl.obolibrary.org/obo/APOLLO_SV_$1"^^ . . . . "repository" . . "^NBK\\d+$"^^ . . . "https://neurovault.org/images/$1"^^ . . . . . . "Genome assembly database - RefSeq accessions" . . . . . "M77F7JM"^^ . "clinical LABoratory Ontology" . . _:N499200ed1a7a4e7e8a11181118c9c86a . "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome."^^ . . . . . "0154"^^ . . . . "hms.lincs.compound" . "sorepsc" . "https://bioregistry.io/bpdb:"^^ . "https://www.arabidopsis.org/locus?accession="^^ . . . . . "Toxin and Toxin Target Database" . . "ddi.characterset" . . "SAREF4AUTO: an extension of SAREF for the automotive domain" . "http://www.w3.org/XML/1998/namespace#$1"^^ . . . . "SWEET Ontology Representation Scientific Component" . "obo" . . "https://osdr.nasa.gov/bio/repo/data/payloads/$1"^^ . . . . "rutgeraldo@gmail.com" . "cdna/est" . "category"^^ . "somatic" . . . . . "ncbi.genome" . . "RYYVLZVUVIJVGH-UHFFFAOYSA-N"^^ . "^\\d+$"^^ . . . . "authoredBy"^^ . "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products."^^ . . "http://sweetontology.net/phenFluidInstability/"^^ . . . . . "worldavatar.kin" . . . . "sweet.rep" . . . "^\\d{7,8}$"^^ . . . . "false"^^ . . . . . . . . "http://purl.obolibrary.org/obo/ECTO_"^^ . . "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1"^^ . . "http://purl.obolibrary.org/obo/EMAP_"^^ . . "uniprot.isoform" . . "study design" . . . "the chemical compound identifier for the EBI SureChEMBL 'chemical compounds in patents' database"^^ . . "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1"^^ . . . . . . . "http://purl.obolibrary.org/obo/OARCS_"^^ . "SWEET Ontology State Space Configuration" . . "false"^^ . "dataplant" . "http://purl.obolibrary.org/obo/ERO_"^^ . . "Ascoli@gmu.edu" . "https://private-user-images.githubusercontent.com/58422600/595255823-95fb77d4-c775-4d1f-8d1d-aacbda324bb7.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.9V4j3O3ppguT7s4TmyLNAJQwULkh2oGzIrRcP7N0SYg"^^ . . . "false"^^ . . "http://sweetontology.net/realmLandVolcanic/"^^ . "rebase" . "Blake A Sweeney" . . "protein family/group databases" . . . . "PTHR12345"^^ . "aging" . "https://biomedit.ch/rdf/sphn-ontology/sphn#$1"^^ . . "expression data" . "Bitbucket" . "FerroLigandDB is a meticulously curated, high-quality database of ferroptosis regulators, including inducers and inhibitors."^^ . . . . . . . "bioregistry" . "false"^^ . "false"^^ . . "0000066"^^ . . . "gaoj@mskcc.org" . . . "false"^^ . "false"^^ . . . . . "AntiBody Sequence Database" . . . "enzyme" . "BidEnergySetpointSignal"^^ . "https://purl.org/linsearch/$1"^^ . "ddi.typeofnote" . . . . "data visualization" . "AbductionOrForcedDisappearance"^^ . "http://sweetontology.net/phenFluidDynamics/"^^ . "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species."^^ . "http://purl.org/heritagedata/schemes/eh_tmt2/concepts/"^^ . . "https://cd-code.org/c-mods/"^^ . "http://biohackathon.org/resource/faldo#$1"^^ . . . "obo" . . "http://sweetontology.net/reprSpaceCoordinate/"^^ . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes."^^ . . . "http://www.phosphosite.org/siteAction.do?id=$1"^^ . . "Biosapiens Protein Feature Ontology" . . "MarRef" . "true"^^ . "subject agnostic" . . . . "CD-CODE condensate-modulating drug" . . "false"^^ . . . . . . . . . . "systems biology" . . . "Identifiers for hardware used in experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . "http://purl.obolibrary.org/obo/MONDO_"^^ . . . "NOR00681"^^ . "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#"^^ . "genome" . . "earth sciences" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy"^^ . "v.robert@wi.knaw.nl" . . . . . "European Collection of Authenticated Cell Culture" . . . "Account"^^ . "false"^^ . "MolBiC Cell Line" . . . "repository" . . . "false"^^ . . "species" . . . "phenomena" . . . . . "scopus.work" . "imaging" . "KEGG Metagenome" . "bibliography/documents" . . "https://www.ebi.ac.uk/ols4/ontologies/nmrcv/terms?curie=NMR:$1"^^ . . . . . . . "^\\d{7}$"^^ . . . "http://sweetontology.net/phenReaction/"^^ . . . . . . "^\\d+$"^^ . . "Journal of Economic Literature Classification System" . . . "false"^^ . . "^\\w+$"^^ . "^\\d+$"^^ . . "The AGD is an integrated database resource dedicated to collecting the genomic-related data of the Asteraceae family. This collections refers to the broader phenotypic and genetic resources of Asteraceae plants."^^ . "http://purl.obolibrary.org/obo/LABO_$1"^^ . . "Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle"^^ . "MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012"^^ . . "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited."^^ . . "OUYCCCASQSFEME-MRVPVSSYSA-N"^^ . . . "scop.sunid" . . "drug" . . . . . "^RCV\\d+(\\.\\d+)?$"^^ . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . . . "000040"^^ . . "ontology" . "http://purl.obolibrary.org/obo/BTO_"^^ . . . . "thomas@luetteke-online.de" . . . . . . "open educational resources" . . "10004892"^^ . . . . . . . "Omar S. Harb" . . . "FBbi" . "false"^^ . . . "002804"^^ . . "multicellds.cell_line" . . . . . "cell" . . . "2004-2820"^^ . "hemolytic peptides" . "A Systematic Annotation Package for Community Analysis of Genomes" . . . . "false"^^ . . . "http://data.loterre.fr/ark:/67375/BLH-"^^ . . . "0000046"^^ . "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/"^^ . . "https://www.perkinelmer.com/searchresult?searchName="^^ . "molecular biology" . "https://www.iedb.org/assay/$1"^^ . . "false"^^ . "ISO Object Identifier" . "2gc4"^^ . . . "Database of structurally defined protein interfaces" . "ontology" . "obo" . "^\\d+$"^^ . "http://sweetontology.net/phenGeolGeomorphology/"^^ . . . "NLXANAT covers anatomy terms. Almost all terms are also in Uberon."^^ . "SWEET Ontology Property Temperature" . . "KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.\n\n Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.\n Structure - grouped as similar chemical structures having the same skeleton, etc.\n Target - grouped by drug targets\n Class - drug classes often representing similar mechanisms of action\n Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters\n\nChemical groups are often used for identifying essentially the same active ingredients of drugs in different countries."^^ . . . . . . "protein" . . . . . . . . "This vocabulary is used internally inside MedGen to assign temporary identifiers to terms that will later get put in UMLS. Mappings between MedGen, MedGen CIDs, and UMLS can be found [here](https://ftp.ncbi.nlm.nih.gov/pub/medgen/MedGenIDMappings.txt.gz)."^^ . "https://cso.kmi.open.ac.uk/topics/"^^ . "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms."^^ . . . . . . . "^\\d{5}$"^^ . "ICDCM_2005" . "PACTR202304525632216"^^ . . . "^\\d{7}$"^^ . . "UM-BBD_compID" . . . . . "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . . . . . . . "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier."^^ . "interaction" . "http://purl.obolibrary.org/obo/BCGO_"^^ . "small molecule" . . . "pharmgkb.gene" . "Ontology of Microbial Phenotypes" . "LIPID_MAPS_instance" . . . . "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all."^^ . . . . "10015919"^^ . . . . . . "http://purl.obolibrary.org/obo/MFOMD_"^^ . "^\\d{7}$"^^ . "false"^^ . . . . . . . . "NLXBR" . "The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors."^^ . "false"^^ . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . . "engineering" . . . . . . "^\\d+$"^^ . "A01M1/026"^^ . . "genome/gene" . . . . "ontology" . "CCDC Number" . . "Alex Bateman" . "bind" . "interaction" . "Minimum Information about any (x) Sequence" . . . . . . "literature" . "false"^^ . . . . . . . . "false"^^ . . "^\\d+$"^^ . . . "http://sweetontology.net/stateDataProcessing/$1"^^ . . . . . "https://www.biorxiv.org/content/10.1101/"^^ . "mhucka@caltech.edu" . "a.kranz@fz-juelich.de" . "sequence" . . . . . "prefLabel"^^ . "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland."^^ . "^\\d{7}$"^^ . "Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."^^ . "Boiling"^^ . . "microscope" . "david.linke@catalysis.de" . . "http://purl.org/dcx/lrmi-vocabs/educationalAudienceRole/$1"^^ . "ClinVar Record" . . . . . . "Biological Imaging Methods Ontology" . "^[0-9]+$"^^ . "bibliography/documents" . . "27267"^^ . . "589462"^^ . . . . . "ontology" . . . . "bfo" . . "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available."^^ . . "false"^^ . "http://purl.obolibrary.org/obo/GAZ_"^^ . . "http://spdx.org/rdf/terms#"^^ . . . "life science" . . . "http://schema.mobivoc.org/#$1"^^ . "omics" . . "Representing Content in RDF" . "degraders" . . "false"^^ . "false"^^ . "^C\\d+$"^^ . "single cell" . . . . . "false"^^ . "NONHSAG00001"^^ . . . . . . "architecture" . . "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM="^^ . . . "false"^^ . . "jesper.friis@sintef.no" . . "false"^^ . "developmental biology" . . . . "https://saref.etsi.org/saref4bldg/"^^ . "expression" . . "http://purl.obolibrary.org/obo/VTO_"^^ . "https://dbpedia.org/ontology/"^^ . . "true"^^ . "Yeast Intron Database v3" . . "false"^^ . . . . "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1"^^ . "chembiosys.investigation" . "David Osumi-Sutherland" . . "CALM1"^^ . . . . . . "sequence" . . "epo" . "false"^^ . . "^\\d+$"^^ . . . . "Yuki Yamagata" . "health science" . . "2000191"^^ . . . . . . . . "ontology" . "CTCAE" . "phenotype" . . "https://scicrunch.org/resolver/RRID:IMSR_TAC_$1"^^ . . . "snap" . . "earth sciences" . . "http://www.w3.org/2001/XMLSchema#$1"^^ . . . . . "biomedical science" . "UK Provider Reference Number" . "VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration."^^ . "false"^^ . "co_334" . "https://bioregistry.io/combine.specifications:"^^ . . "149"^^ . . . "material science" . . . . "classification" . "^\\d{7}$"^^ . "dna" . . "sopropo" . . "SWEET Ontology Property Fraction" . "molecules" . . "https://nfdi4culture.de/ontology/CTO_"^^ . . "michall@cc.huji.ac.il" . . "obo" . . "false"^^ . . "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . "egon.willighagen@maastrichtuniversity.nl" . . "HGVST1828"^^ . . . . "ess" . "obo" . . . "Alpine"^^ . . "ecolexicon" . . . . . "^[A-Za-z0-9]+$"^^ . . . . "obo" . "A CORDIS funding scheme"^^ . . . . . "UNESCOTHES" . "sweet.stsl" . "image/movie" . . "^[0-9a-f\\-]+$"^^ . . . "false"^^ . "The Bioinorganic Motif Database" . "Person"^^ . "^[a-z0-9]{32,32}$"^^ . . . . "BiGG Model" . . . "ontology" . . . "Cryo Electron Microscopy" . . . "microbiota" . "jonrkarr@gmail.com" . . "false"^^ . "temperature" . "Q0VCA6"^^ . "https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/$1"^^ . . "165a"^^ . "MM00040"^^ . "go.model" . . . . . . . "life sciences" . "complexportal" . . . . "http://www.p3db.org/phosphosite.php?id=$1&ref=0"^^ . "false"^^ . . . . . "28789"^^ . . . "geologic constituent" . . . . "Diversification criteria of REX research" . "tahh" . . "foodon" . "life science" . . . "yeastintron" . "Todd W Harris" . . . . . "epawaste" . "plana" . . . "https://www.nfdi.de/wp-content/uploads/2022/03/Logo_NFDI-MatWerk-1000px.png"^^ . . "xco" . "false"^^ . . "Datasets inside StoreDB at University of Cambridge"^^ . "Dataset"^^ . . . "miscellaneous" . . . . "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation."^^ . "http://vocabulary.odm2.org/methodtype/$1"^^ . "sequence" . . . "nsheffield@virginia.edu" . . "void" . "https://portal.hubmapconsortium.org/browse/donor/"^^ . . . . "MTHICD9_2006" . . . . . "^PED\\d{5}e\\d{3}$"^^ . . "ZFIN" . . "plant phenotypes and traits" . . . "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment. ATOL aims to: provide a reference ontology of phenotypic traits of farm animals for the international scientific and educational - communities, farmers, etc.; deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; represent traits as generic as possible for livestock vertebrates; make the ATOL ontology as operational as possible and closely related to measurement techniques; and structure the ontology in relation to animal production."^^ . "alteration" . "animal breeding" . "Accuracy"^^ . "ontology/terminology/nomenclature" . "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$"^^ . "FxnI151FMs"^^ . . . "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . "A public place to process, interpret and share GC/MS metabolomics datasets."^^ . . . . "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1"^^ . . . "^BG\\d+$"^^ . "protein" . . "^\\d+$"^^ . . . . . . "image/movie" . . "gene expression" . "Method Type Vocabulary" . . "obo" . "A category for fields appearing in the data of the UK BioBank"^^ . "infores" . . "K00001"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Pressure"^^ . "false"^^ . . . . "phylogenomic databases" . . "ChemBioSys Project" . "Dialnet book ID" . "http://rssf.i2bc.paris-saclay.fr/NAPP/Niveau2.php?specie=$1"^^ . "^PR[0-9]{6}$"^^ . "chemistry" . . "engineering" . . . . . "http://lincsportal.ccs.miami.edu/datasets/#/view/"^^ . . . . "false"^^ . "casent0106247"^^ . . "true"^^ . . . . . . "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace."^^ . . "Breccia"^^ . . . . "http://iot.uni-trier.de/FTOnto#$1"^^ . "ontology" . "^\\d{7}$"^^ . "false"^^ . . . "^[a-z0-9\\-_]+$"^^ . . "omit" . "Integrated Microbial Genomes Gene" . . . . "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression."^^ . "A repository of software packages written in Rust."^^ . . "ontology" . . . . . . . . "http://sweetontology.net/stateRealm/$1"^^ . "nfdi4dso" . . . . "^\\d+$"^^ . . . . "biomedical science" . . "subject agnostic" . . . "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$"^^ . "http://sweetontology.net/stateSpace/$1"^^ . . . . . . . "Brick is an open-source effort to standardize semantic descriptions of the physical, logical and virtual assets in buildings and the relationships between them. Brick consists of an extensible dictionary of terms and concepts in and around buildings, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of Brick with existing tools and databases. Through the use of powerful Semantic Web technology, Brick can describe the broad set of idiosyncratic and custom features, assets and subsystems found across the building stock in a consistent matter. Adopting Brick as the canonical description of a building enables the following: 1) Brick lowers the cost of deploying analytics, energy efficiency measures and intelligent controls across buildings, 2) Brick presents an integrated, cross-vendor representation of the multitude of subsystems in modern buildings: HVAC, lighting, fire, security and so on, 3) Brick simplifies the development of smart analytics and control applications, and 4) Brick reduces the reliance upon the non-standard, unstructured labels endemic to building management systems."^^ . "rna" . . "The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas."^^ . . . . . . . . . "obo" . . "https://purl.org/nfdi4plants/ontology/dpbo/DPBO_"^^ . . . . "^\\d{7}$"^^ . "drug" . . . "tcia.collection" . . . . . . "energy engineering" . "streptococcus pneumoniae" . . "City"^^ . . . "protein family/group databases" . . . "false"^^ . . . . . "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . . . "SWEET Ontology Relationships Physical" . . . . . "population genetics" . "BioSystems" . . . . . . "true"^^ . "http://sweetontology.net/propSpaceHeight/$1"^^ . "Exposure ontology" . . . "transcript" . . . . . . "Donovan Parks" . "45539"^^ . . "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases."^^ . . "http://sweetontology.net/matrNaturalResource/$1"^^ . "pathway" . . . . "cellular components" . "localization" . . . "false"^^ . "carbohydrate" . . . "http://sweetontology.net/phenStar/"^^ . "false"^^ . . . "551115"^^ . "phenotype" . "https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr="^^ . . . "forestry" . "Represent chemical entities having particular CHEBI roles"^^ . "cjmungall@lbl.gov" . "http://vocab.nerc.ac.uk/collection/L05/current/"^^ . "https://bio.liclab.net/diabetesOmicdb/RNA-seq?sampleId=$1"^^ . "ontology" . . . . "fair" . . . "organism" . . "441958208"^^ . . . "compound" . . "Golm Metabolome Database GC-MS spectra" . . . "http://rs.tdwg.org/dwcdoe/"^^ . . . . "reaction" . . "The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species."^^ . . . "ontology" . . . "false"^^ . "sequence" . . . "true"^^ . "educational science" . "MediaDive Medium" . "merriam_webster" . . "^\\w+$"^^ . . . . . "adverse reaction" . . "cognitive neuroscience" . "dna" . "https://vocabs.acdh.oeaw.ac.at/oeai-cultural-periods/$1"^^ . . "https://docid.africapidalliance.org/docid/"^^ . "https://www.ncbi.nlm.nih.gov/clinvar/variation/"^^ . "ACM1_HUMAN"^^ . . . "Vitro is a full stack framework for building semantic web applications. It is not domain specific."^^ . . "http://purl.obolibrary.org/obo/EHDAA_$1"^^ . "^.+$"^^ . . . "https://www.plantplus.cn/treehub/tree/$1"^^ . . . . "https://doi.org/10.29172/"^^ . . "https://ssrn.com/abstract=$1"^^ . . . "fair" . "biomedical science" . . "Unite" . . . . . . . . . "DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets."^^ . . "datf" . "http://sweetontology.net/propEnergy/"^^ . . . . . . "false"^^ . . . . . "false"^^ . "https://cthoyt.com/evr/"^^ . . "http://purl.obolibrary.org/obo/MIRO_"^^ . . . . "fbtc" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Fluvial"^^ . . . . . "co_326" . . . . "0002-1975-61"^^ . "CategorialBibliometricData"^^ . . "chemistry" . "Individual Organism Information Ontology" . . "dataplant" . . . . "true"^^ . . "unipathway.reaction" . . "gene" . . . . . "nfdi4cat" . "3d structure" . "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI."^^ . "https://www.mlcommons.org/mlc-id/"^^ . . . . "bibliography/documents" . . "mex" . . . "Fidan Limani" . . . . . "Probes and Drugs" . . . "life science" . "Oryzabase Mutant" . . "^\\d+$"^^ . "^\\d{7}$"^^ . . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1"^^ . . . . . . "https://w3id.org/ccso/ccso#"^^ . . . . "https://w3id.org/gaidet/"^^ . . . . . . . . "https://lobid.org/gnd/$1"^^ . . . . "social and behavioural science" . "MIRT000002"^^ . "false"^^ . . "false"^^ . _:N1eedfa51866b48bbaeb66be22ef3ae72 "Plant Ontology Administrators" . . "homologous" . "image/movie" . . . . . . . . "Database of biopesticides maintained by the University of Hertfordshire"^^ . "open educational resource" . . . "fr" . "span" . . "expression" . "false"^^ . "DrugBank Condition" . . "The Sustainable Meat Systems Ontology (SuMSO) is a domain ontology addressing meat systems sustainability. It extends Sustainability Core Ontology (SCO) and Basic Formal Ontology (BFO). Currently, SuMSO provides a representation of the core architectural features of a sustainable meat system, focusing on cow-derived meat as an initial use case. SuMSO deals with meat in a broad sense: it contemplates the liaisons with other cow-derived materials, such as leather and bones., SuMSO is a domain of ontology, representing meat systems sustainability. Currently, this resource provides the core ontological module of SuMSO that deals with the essential architectural features of a sustainable meat system. This ontological module addresses meat in a broad, genuine sense focusing on cow-derived meat as a starting use-case example. It does not address features related to fish, insects, novel meats, and plant-based meats. The SuMSO core ontological module aims to be the starting basis on which to extend SuMSO to more comprehensively represent meat systems sustainability., representing meat systems sustainability.\n\nCurrently"^^ . "The NFDI4Culture Ontology (CTO) is a domain-specific ontology module developed within the Task Area 5 of the NFDI4Culture initiative. (from homepage)"^^ . "Pierre-Alain Binz" . . . "http://purl.obolibrary.org/obo/CMF_$1"^^ . . . . . "http://purl.obolibrary.org/obo/FLU_"^^ . . . . . "spbase" . . _:Ne4fae1d6109e4c46a4047d9ea42b177a "Julian Seidenberg" . . . "material science" . . . . . . . . "http://sweetontology.net/reprSpaceDirection/$1"^^ . . "^PIRSF\\d{6}$"^^ . . "http://purl.obolibrary.org/obo/ONTOAVIDA_"^^ . . . . "false"^^ . . . "hoso" . . . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID="^^ . "sequence" . "https://w3id.org/def/openadr#"^^ . . . "protein" . . "PjrpzUIAAAAJ"^^ . . . "13"^^ . "cell types" . . . . . . . . . . . "Human Reference Atlas Common Coordinate Framework Ontology" . . . "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . . "https://www.nfdi.de/wp-content/uploads/2022/05/DAPHNE4NFDI_logo.png"^^ . . . . "obo" . "rna-seq" . . . . . "false"^^ . "http://www.pathwaycommons.org/pc/record2.do?id="^^ . . . . . . . "ontome.namespace" . . . . . . . . "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode."^^ . "BE1"^^ . "NeuronDB" . . . "34"^^ . "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)."^^ . . "The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains."^^ . "ontology/terminology/nomenclature" . "portal" . "ess" . . . . . "life sciences, biology" . . "ElementNumber"^^ . "DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors."^^ . . . "http://aber-owl.net/ontology/$1" . "false"^^ . . . . . . "enzymology" . "s4grid" . . "^\\d{6,7}$"^^ . "Ontology of species-neutral phenotypes observed in pathogen-host interactions."^^ . . . . . "structure" . . "https://www.ncbi.nlm.nih.gov/gene/$1/ortholog"^^ . "tcdb" . "industrial engineering" . "datacite.name" . . . . . . . . "false"^^ . . . "larvae" . . "identifier for OpenTrials database over clinical trials"^^ . . . . "https://omabrowser.org/oma/hog/HOG:$1"^^ . "312.33"^^ . . . . . "^\\d+$"^^ . . . . "omics" . . "false"^^ . "https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_"^^ . "^TRD\\d{5}$"^^ . . . "http://purl.org/heritagedata/schemes/560/concepts/"^^ . "https://bioregistry.io/dragondb.locus:"^^ . "mirjam.stappel@uni-osnabrueck.de" . . . . . . . . . "ontology" . . . "building informatics" . . . "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/"^^ . "http://mirbase.org/cgi-bin/mature.pl?mature_acc="^^ . . . . "KIM Education Level" . . "http://purl.org/spar/datacite/$1"^^ . . . . "xpo" . "sostri" . "https://fedirect.toolforge.org/?id="^^ . . . "false"^^ . . . . "BioStudies database" . . "kim.hochschulfaechersystematik" . . . . . "schemaorg" . "false"^^ . . "http://www.w3.org/ns/shacl-node-expr#$1"^^ . "false"^^ . "ontology" . . "http://vocabularies.unesco.org/thesaurus/concept"^^ . . . "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project."^^ . "classification" . "false"^^ . . "ac.subtype" . "https://scicrunch.org/resolver/RRID:AGSC_"^^ . . "food" . "http://purl.obolibrary.org/obo/TAO_"^^ . "Description of the relationship of the resource being registered (A) and the related resource (B)."^^ . . . . "cdcode.cmod" . . . . . . . . . . . . . . . . "http://www.kegg.jp/entry/"^^ . . . "space direction" . "IPNI plant ID" . _:N5d822cf90fab4624a62667b91665eb5b "gregg@greggkellogg.net" . "true"^^ . . "FiehnLib001006"^^ . "swissregulon" . "http://sweetontology.net/matrPlant/"^^ . . "true"^^ . "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1"^^ . "Prefixes relevant for the digital humanities" . . . "^\\d+$"^^ . "http://thebiogrid.org/"^^ . . "gene feature" . "^\\d+$"^^ . . . . . . "iuphar.family" . "compound" . "false"^^ . . . "ontology" . . . "^\\d{7}$"^^ . "protein" . . . "representation space geometry" . "https://jjj.bio.vu.nl/models/$1"^^ . "ontology" . . "phenotype" . . . "SWEET Ontology Material Ion" . . . . . . . . . . . . "229233"^^ . . . . "other subjects" . "Amelanchier laevis"^^ . . "Global Trade Alerts Ontology" . . "http://sweetontology.net/matrIon/"^^ . "sosa" . . . "life science" . . "http://genome.crg.es/datasets/abs2005/entries/$1.html"^^ . "ontology" . . "http://sweetontology.net/matrOrganicCompound/$1"^^ . "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId="^^ . . . . . "life cycle" . . . . . . "toxicity" . . . . . . . "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur."^^ . . "acceleratormassspectrometry"^^ . . "habronattus" . . . . "mammalian" . "atcvet" . . . . "http://sweetontology.net/matrFacility/"^^ . . "https://bioregistry.io/chemsynthesis:"^^ . . . "http://purl.obolibrary.org/obo/CLO_$1"^^ . . . "oclc" . . "owl" . . "w3c rec" . "PAp00000009"^^ . . "Online Dictionary"^^ . "https://glottolog.org/resource/languoid/id/$1"^^ . "PEPhub" . . "false"^^ . . . "SNOMEDCT" . . "false"^^ . "http://purl.obolibrary.org/obo/PRIDE_"^^ . _:Nb9eb8844d07c489a8ef86cee3f84a57d . . . . "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . "phenology" . . "https://www.metabolomicsworkbench.org/databases/refmet/refmet_details.php?REFMET_ID=$1"^^ . . "life science" . _:N9b7c5b490ca14c0ebcb1680b4c714b9a "Peter J. DeVries" . "TreeHub" . . "Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world."^^ . . . "NCI Thesaurus" . . . "The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]"^^ . . . . "dcmitypes" . . . "http://rdf-vocabulary.ddialliance.org/lifecycle#$1"^^ . . . "https://bioregistry.io/smiles:"^^ . "The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format."^^ . "https://ceds.ed.gov/element/000928#"^^ . . . "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:"^^ . "hgvs" . . "http://purl.obolibrary.org/obo/CHEBI_$1"^^ . "0000001"^^ . . . . "ontology" . . . . . . . . . . "false"^^ . . "The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccines and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clinical vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities."^^ . "Mouse Tumor Biology Database" . "birnlex" . . . "https://w3id.org/kim/hochschulfaechersystematik/$1"^^ . . . . . "http://purl.obolibrary.org/obo/PROPREO_"^^ . . "sorea" . . "unique academic work identifier assigned in Scopus bibliographic database"^^ . . . . . . . . "health/disease" . . "N1899"^^ . . . "Standards for Reporting Enzymology Data" . "cdna/est" . "false"^^ . . . "genpept" . . "false"^^ . . . . . . . "http://www.ontobee.org/ontology/$1" . . . "false"^^ . . "molecules" . "http://purl.org/ejp-rd/vocabulary/$1"^^ . . . . . "http://purl.obolibrary.org/obo/MICRO_$1"^^ . "https://phytochem.nal.usda.gov/phytochem/chemicals/show/"^^ . . "life science" . . _:Nb40cb199dfa34228b92685a13aa806c2 . . . . "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments."^^ . "^\\d{7}$"^^ . . . . . . . "ko00002"^^ . . "mao" . . . . . "SWEET Ontology Material Biomass" . "bactibase" . "genome/gene" . . . "https://bioregistry.io/cellbank.australia:"^^ . . . "false"^^ . "population genetics" . "ontology" . "ega.study" . . . . "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world."^^ . "Ablutions_Room"^^ . . . . "registry" . "11061"^^ . . . . . . "ontology" . . . "ess" . . "ontology" . . . . . . "false"^^ . "6237"^^ . "false"^^ . . . "Cell line collections (Providers)"^^ . . . . "sophatmot" . "who.mortality.country" . . . "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id="^^ . "https://bbp.epfl.ch/nexus/web/studios/public/$1"^^ . . . . . "g2p" . "Aa"^^ . . . "obo" . . . . "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns."^^ . . "disease" . "The Bibliographic Ontology" . . . "C00000001"^^ . . "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id="^^ . . . "government" . . "false"^^ . "EcoGene" . . "false"^^ . "http://spdx.org/rdf/terms#$1"^^ . . . "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it."^^ . "MarFun" . "cellxgene.collection" . "13"^^ . . . "false"^^ . . "classification" . . . . . . . . . . "false"^^ . "https://cropontology.org/rdf/CO_323:"^^ . . . "chemical" . . . "Summary Statistic Type" . . . _:N1ac5bafc630e4f8a89ce73e8abfdd479 . . . "life cycle stage" . "false"^^ . . . "false"^^ . . "false"^^ . . "700054086"^^ . . . "false"^^ . "expression" . . "https://w3id.org/dot#$1"^^ . "SARGON (SmArt eneRGy dOmain oNtology) is an open-source effort to define semantic descriptions of the smart assets in building automation and smart grid and the relationships between them. SARGON consists of an extensible dictionary of terms and concepts in and around building and smart grid, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of SARGON with existing tools and databases. Through the use of powerful Semantic Web technology, SARGON can describe the broad set of Devices and custom features, assets and subsystems found across the building stock in a consistent matter."^^ . . "sioc.swan" . . . . "http://purl.obolibrary.org/obo/INO_$1"^^ . . "sequence" . . "geography" . . . . "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id="^^ . . . "http://www.w3.org/2007/05/powder#$1"^^ . "nfdi4ing" . "http://www.scancerrna.com/toDetail?id=$1"^^ . . _:N4cfff7a8bfdf444e864275a271fcce90 "Onard Mejino" . . "ontology" . "190000021540"^^ . . "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/"^^ . . "http://purl.obolibrary.org/obo/PD_ST_$1"^^ . . "false"^^ . "false"^^ . . "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information."^^ . . "false"^^ . "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1"^^ . "chemistry" . . . . . . . "https://w3id.org/mobilitydcat-ap/mobility-theme/$1"^^ . . "Egon Willighagen" . "ontology" . . . . . "0000001"^^ . "true"^^ . . . . . . . "false"^^ . "^ZDB\\-\\w+\\-\\d+\\-\\d+$"^^ . . . . . "http://purl.obolibrary.org/obo/MIRNAO_$1"^^ . "National Uniform Claim Committee Characteristic" . . "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life."^^ . . . "life science" . . "Yongqunh He" . . . "Phytozome Locus" . . . "scientific" . . "46977"^^ . "dictyBase" . "bioschema" . "sequence" . "spectrometry" . "sweet.phso" . . . . "co_336" . . "Publisher short codes appearin in the NLM Catalog."^^ . . . . . "false"^^ . . . "https://raras.org/class/"^^ . "gesis.variables-relations" . . . . "soreacz" . "The Context and Measurement Ontology (COMO) contains ontological terms to describe the context for various types of experimental data and measurements. It is useful in its current state for several different environmental microbiology projects. This ontology is used in multiple CORAL (Contextual Ontology-based Repository Analysis Library) deployments."^^ . . . "^NPC\\d+$"^^ . . . . "biocarta.pathway" . "264"^^ . "AURKA"^^ . . "false"^^ . "World Historical Gazetteer (WHG) is providing a collection of content and services that permit world historians, their students, and the general public to do spatial and temporal reasoning and visualization in a data rich environment at global and trans-regional scales."^^ . "Rice Metabolic Pathways" . "sweet.ph" . "0001"^^ . "nsc" . "false"^^ . . . "atmosphere lightning" . "International Standard Classification of Education, 2013 Edition" . "AcousticComfort"^^ . . . "dna" . . "ontology" . . "A collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Objects Consortium imported from the consortium's official BARTOC record [https://bartoc.org/en/node/18961](https://bartoc.org/en/node/18961).\n\nNote: this collection is a subset of the BARTOC collection until all ontologies and controlled vocabularies in the BARTOC collection are also curated in the Semantic Farm." . "obo" . . "dbvar.studies" . . . . "author" . . "ncbi.assembly" . "immport" . . . . "^.*/.*$"^^ . . . . . . "false"^^ . . "http://purl.obolibrary.org/obo/EMAP_$1"^^ . "PSI Extended File Format" . . . . "sostrt" . . . "nfdi4culture" . . "true"^^ . "bioresource" . . "Input data and analysis results for the paper \"Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 )."^^ . . "SWEET Ontology Relationships Scientific" . . "interaction" . . "^sample_\\d{3}$"^^ . "European Medicines Evaluation Agency" . "forest management" . . . "CQG5"^^ . "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]."^^ . "false"^^ . "MT"^^ . "gaid" . "Darwin Core pathway controlled vocabulary" . . . "sequence" . . "false"^^ . "https://biomodels.net/vocab/idot.rdf#"^^ . "Cathy Wu" . . . . . "biochemistry" . "ontology" . " aeolianland" . . . . . "http://uri.neuinfo.org/nif/nifstd/nlx_qual_"^^ . "^[a-z]+(\\-[a-z]+)*$"^^ . . . "false"^^ . . . . "A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Microbiota Consortium created by the [NFDI Section Metadata WG Ontology Harmonization and Mapping](https://github.com/nfdi-de/section-metadata-wg-onto/). The working group is in the process of identifying NFDI4Microbiota Consortium members appropriate for maintaining this collection." . "false"^^ . . "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis." . . . . "^[A-Z_a-z]+$"^^ . . . "soreal" . . . "false"^^ . . "3966782"^^ . . "kaysheva1@gmail.com" . "RDFa Vocabulary for Term and Prefix Assignment, and for Processor Graph Reporting" . "10"^^ . "Gene Ontology Rules" . . "SWEET Ontology Realm Atmospheric Weather" . "NIH Human Embryonic Stem Cell Registry" . "lipidomics" . . . . "false"^^ . "ontology" . "An international LGBTQ+ linked data vocabulary"^^ . . . . . "http://www.case.edu/EpilepsyOntology.owl#$1"^^ . . . . "discoverx" . "F-SNP" . . . "T06648"^^ . . "carbohydrate" . "0000983"^^ . . "metlin" . . . "IntAct provides a freely available, open source database system and analysis tools for protein interaction data."^^ . "sweet.phatmoc" . "cessda" . "SWISS-MODEL Repository" . . "PseudoGene" . . "SNOWMEDCT" . "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$"^^ . "Identifiers for proposals/projects at the Joint Genome Institute"^^ . "type"^^ . "^\\w+(\\-)?\\w+(\\-)?\\w+$"^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_cell_"^^ . . . "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions."^^ . . "false"^^ . . "genome/gene" . "2"^^ . . "Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining basic information on community-related web services."^^ . "ess" . . "mona" . . . "protein" . . "ontology" . "obo" . . "^[A-Za-z0-9]+$"^^ . "http://purl.obolibrary.org/obo/ICEO_"^^ . . . . . "false"^^ . . . "protein" . . "https://www.clinicaltrialsregister.eu/ctr-search/search?query="^^ . . "obo" . . . "JGI Phytozome" . "false"^^ . . "agriculture" . "owlstar" . . "sweet.reaofl" . . . . . . . . "Genetic Testing Registry" . "http://protege.stanford.edu/plugins/owl/protege#$1"^^ . "false"^^ . "Paula Duek Roggli" . "molecule" . . . . "data identity and mapping" . "https://caninecommons.cancer.gov/#/study/$1"^^ . "obo" . "^MSV\\d+$"^^ . "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." . "protein-protein interaction databases" . "http://sweetontology.net/procChemical/"^^ . "http://purl.obolibrary.org/obo/DRON_"^^ . . "InterPro" . "somaf" . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information."^^ . . "role" . . . . "database" . . . . "representation time day" . "cell" . "http://www.oid-info.com/get/2.16.840.1.113883.6" . "wlmo" . . . . . . . . "eropmoscow" . . "ontology" . . . "m4i" . "ASKEM Epidemiology Prefixes" . . . "125768"^^ . . . . . "FB00000917"^^ . . "SPU_000001"^^ . "bandrow@gmail.com" . "MobiDB is a database of protein disorder and mobility annotations."^^ . "Jakob Voß" . . . "https://proteininformationresource.org/cgi-bin/resid?id=$1"^^ . "institution" . . . . . . "false"^^ . "sweet.stv" . . . "data management" . . "false"^^ . . . . . "A top-level concept scheme that enumerates different types of Learning Resource, designed to supplement existing more generic resource type schemes and which can support local extensions."^^ . . . . "open educational resource" . . . . "false"^^ . "ChemSpiderID" . "https://www.crd.york.ac.uk/PROSPERO/view/"^^ . . . . "bibliometrics" . "splash" . "topics" . "Regulation of Transcription"^^ . . . . "Bgee family" . . . . . "scretf" . . . "cellular component" . "hydrosphere body" . "89afb115-4059-4f4c-8da7-33290869a77d"^^ . . . "biochemistry" . "false"^^ . "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information."^^ . . . . . . "http://purl.org/ao/$1"^^ . "The Protein Information Resource (PIR) had its final release in 2004 and is now a part of UniProt"^^ . . . "si.quantities" . "http://sweetontology.net/matrInstrument/$1"^^ . . . . "glycoepitope" . "false"^^ . "protein complex" . . . . "SWEET Ontology Relationships" . "treebase" . . . "organism" . . "http://purl.obolibrary.org/obo/TXPO_"^^ . . . "RxNorm" . _:N1ac5bafc630e4f8a89ce73e8abfdd479 "loinc@regenstrief.org" . . . . . . . . "genetics" . "https://www.dsmz.de/collection/catalogue/details/culture/$1"^^ . "false"^^ . . "chemical" . . . "^\\w+(\\.)?\\w+(\\.)?\\w+$"^^ . "https://www.ebi.ac.uk/arrayexpress/experiments/"^^ . "CentralCreekCrater"^^ . "nasaosdr.biospecimen" . . . "false"^^ . "geologic fault" . "^\\d{7}$"^^ . . . . "repository" . . "tgn" . "kegg.disease" . . "discipline" . . "reaxys" . . "false"^^ . "false"^^ . . "owl" . . . "http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm"^^ . "nfdi4chem" . "sweet.huj" . . . "Computational Chemistry Ontology" . "organism-specific databases" . . . . . . . . . "SWEET Ontology State Biological" . . . . . . . . "http://purl.obolibrary.org/obo/IEV_"^^ . "Heidi L. Rehm" . "Identifiers correspond to molecular glue compounds in the MolGlueDB which is a free and open-access online database dedicated to the collection and integration of molecular glue compound information."^^ . . . "education" . . . . . "https://ontome.net/profile/$1"^^ . "Item"^^ . . "phenotype" . . "expression data" . "megan.kane@nih.gov" . "alternate"^^ . . . . . . . "false"^^ . "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1"^^ . . . . "Cellular Microscopy Phenotype Ontology" . . . "^10.\\w{4}/\\w{10}$"^^ . . . "ILX" . . "edam.operation" . "tricdb" . . "polytraits.trait" . . . "http://www.semanticdesktop.org/ontologies/2007/03/22/nco#$1"^^ . "https://neurovault.org/images/"^^ . "01"^^ . . . . . . . "wiley"^^ . . "false"^^ . "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1"^^ . . "https://pypi.org/project/"^^ . . . "Temporal Gemma Ontology" . . . "host" . . . . "expression" . . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Pigeon Pea Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . "oga.t@northeastern.edu" . . "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks."^^ . "Curriculum Course Syllabus Ontology" . "approved drug" . . . . "https://www.cellbiolabs.com/search?keywords=$1"^^ . . "engineering" . . . "^\\d+$"^^ . . . "^\\d+$"^^ . "vgnc" . . "Daniel Kahn" . "expression" . "sequence" . "^\\d{8}$"^^ . "Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each."^^ . "resource metadata" . . "https://vietherb.com.vn/metabolites/"^^ . . . "environmental science" . . . . "gpcrnava" . . "The Structure-Function Linkage Database (SFLD) is a hierarchical classification of enzymes that relates specific sequence-structure features to specific chemical capabilities. It was developed by the Babbitt Laboratory in collaboration with the UCSF Resource for Biocomputing, Visualization, and Informatics. As of April 2019, the database is in static format, and will not be updated. [from https://interpro-documentation.readthedocs.io/en/latest/sfld.html, accessed March 18th, 2026]"^^ . "Web of Science work ID" . . "The U.S. Department of Energy (DOE) Office of Scientific and Technical Information (OSTI) is the main metadata archive for permanent storage of registered [DOE DOI products](https://www.osti.gov/pids/doi-services/doe-data-id-service) (datasets, code, articles, patents, multimedia, etc.). When a DOI is minted a unique OSTI identifier for each record [{osti_id}](https://www.osti.gov/api/v1/docs#endpoints-singlerecord) is provided as the suffix in the DOI schema ([{site-specific-prefix}/{user-supplied-doi-infix}/{osti_id}](https://www.osti.gov/pids/doi-services)) and can be alternatively used as the main product identifier endpoint when [searching OSTI.GOV](https://www.osti.gov/search-tools) registry archive (see example below). OSTI.GOV is the primary registry and search tool for all Department of Energy (DOE) funded science, technology, and engineering research and development (R&D) results and the organizational hub for information about the DOE Office of Scientific and Technical Information (OSTI. **Data Product Type Example:** - https://www.osti.gov/biblio/1668761 - https://www.osti.gov/search/semantic:1668761 - https://www.osti.gov/dataexplorer/biblio/dataset/1668761 - https://www.osti.gov/api/v1/records/1668761 - https://doi.org/10.11578/1668761 **Other Core Product Registry Examples:** - Journal Articles: https://www.osti.gov/pages/biblio - Datasets: https://www.osti.gov/dataexplorer/biblio/dataset/ - Software: https://www.osti.gov/doecode/biblio/ - Patents: https://www.osti.gov/doepatents/biblio/ - Multimedia: https://www.osti.gov/sciencecinema/biblio/"^^ . . . "^[1-9]\\d*$"^^ . . . "10034479"^^ . . "Terminologia Histologica" . "https://nmrshiftdb.nmr.uni-koeln.de/molecule/"^^ . "Endogenous Regulatory OligoPeptide knowledgebase-Moscow" . . . . "t4fs" . . . "ontorxn" . "florianv/swap"^^ . . "http://sweetontology.net/relaSci/"^^ . "GlycomeDB" . . "https://togoid.dbcls.jp/#$1" . . "false"^^ . . . . "MEROPS Clan" . . "eric.sid@nih.gov" . . "nucleotide" . . "ontology" . . . . . "Jack R Harkema" . "false"^^ . "LL379-9"^^ . . . "materials" . "representation scientific units" . . "Terminology for Description of Dynamics" . . . . . . . "false"^^ . . . . . . . "https://www.scopus.com/authid/detail.uri?authorId="^^ . . . "^\\d+$"^^ . "researcher" . "false"^^ . "false"^^ . "https://www.nwo.nl/en/projects/$1"^^ . . "nicolas.maillet@pasteur.fr" . "lorenz.reimer@dsmz.de" . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1"^^ . . . . . . . . . "LK99"^^ . . "cgd" . . . "dna" . . "true"^^ . "ontology" . "oral surgery" . . . . . "Veterinary Nomenclature" . "Pseudomonas Genome Database" . . . "protein-protein interaction databases" . "bt0001"^^ . . . "OMIM Phenotypic Series" . "AphidBase Transcript" . "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining."^^ . "protein" . . . . . "coypu.ta" . . . . . . . "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . "genome" . . . . "creativebiolabs.antibody" . . . . . "false"^^ . "0000639"^^ . . "giacomo.lanza@ptb.de" . . . "^\\d{7}$"^^ . . . . . "Allergome" . . . "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^ . . . . . "Name-to-Thing" . . "ontology" . "EY223054.1"^^ . "chemical compound" . . . . "^\\d{6}$"^^ . . . "^\\d{7}$"^^ . . "0100010"^^ . "sweet.phen" . "^MAM\\d{5}\\w$"^^ . . . . . "disease course" . . . "model organisms" . "https://schema.coypu.org/gta#"^^ . . . "61"^^ . "biomedical science" . . . "000000024"^^ . . "people/11035"^^ . . "structure" . "VFG2154"^^ . "Jeet Kiran Vora" . . . . "civic.gid" . . "sorepscd" . . "ess" . "false"^^ . . . . . . . . "scdo" . . . "Grenada"^^ . . . . "false"^^ . "ontology" . . "classification" . . "India Clinical Trials Registry" . . "co_322" . "https://terminology.fraunhofer.de/voc/bau#$1"^^ . "tfsco" . "false"^^ . . . . "The Europeana Data Model (EDM) is aimed at being an integration medium for collecting, connecting and enriching the descriptions provided by Europeana data providers. The RDF vocabulary for http://www.europeana.eu/schemas/edm/ defines the elements introduced by EDM (as opposed to the ones EDM re-uses from other namespaces)."^^ . "phenotype" . "LINCS Small Molecule" . . "^(E|D|S)RR[0-9]{6,}$"^^ . . . . . . "^[1-9]\\d{5}$"^^ . "molecular biophysics" . "The AAT includes generic terms, and associated dates, relationships, and other rich information about concepts related to or required to catalog, discover, and retrieve information about art, architecture, and other visual cultural heritage, including related disciplines such as archaeology and conservation. Visual works include not only visual cultural works classified as \"art\" according to Western aesthetics, but also utilitarian and ceremonial works. Terminology may be used for work types, roles, materials, styles, cultures, techniques, subject, etc., so long as terms are within the defined scope of AAT. [from https://www.getty.edu/research/tools/vocabularies/aat/aat_faq.html]"^^ . "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$"^^ . . . "AffyProbeset" . . "false"^^ . . . "Space Life Sciences Ontology" . "lgai.cede" . "swh" . . "ontology" . "https://elsst.cessda.eu/id/3/$1"^^ . "runbiosimulations" . . . . "tib.gpo" . "dpvocab" . . . . "https://cropontology.org/rdf/CO_321:$1"^^ . . . . "false"^^ . . "http://www.w3.org/ns/org#$1"^^ . "https://www.ebi.ac.uk/complexportal/complex/"^^ . "TreeHub is a taxonomical database for trees. TreeHub contains extracted phylogenetic data and integrates relevant species information for each identifier."^^ . . . . . . "nexus" . . "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output."^^ . . . "smiles" . . . "https://www.ipni.org/p/"^^ . . "^\\d+$"^^ . "Pankaj Jaiswal" . "This vocabulary defines education levels for pre-kindergarten through grade 12 for the United States. It also defines general categories for post-secondary education (vocational, professional and life-long learning)."^^ . . . "PhageDive" . "nfdi4energy" . "5621"^^ . "MaizeGDB" . . . "^\\d+$"^^ . "https://www.webofscience.com/wos/woscc/full-record/WOS:$1"^^ . . "health/disease" . "ontology" . "PDBsum provides an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them."^^ . "false"^^ . "false"^^ . . "http://purl.obolibrary.org/obo/MI_$1"^^ . . "false"^^ . . "WormBase" . "chris@sanderlab.org" . . . "false"^^ . . "https://labsyspharm.github.io/lspci/"^^ . "tib.sto" . . . "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures."^^ . "IUPAC Compendium of Analytical Nomenclature (Orange Book)" . . . "nathan.baker@pnnl.gov" . . . . "595"^^ . "http://sweetontology.net/reprMathGraph/"^^ . . . "http://purl.obolibrary.org/obo/CEPH_"^^ . "ncbiortholog" . "nfdi4ing" . "https://biomarkerkb.org/canonical/$1"^^ . . "Ulrike Mäder" . "Numeric Type" . "H2020-TWINN-2015"^^ . . "Reactome" . . . . . . . . . "http://archaeology.link/ontology#"^^ . . . "sweet.realp" . . "classyfire" . . . "^\\d{7}$"^^ . . . . "Austral"^^ . "https://purls.helmholtz-metadaten.de/prima/core#"^^ . _:Nb20a114a9ea0451f839b5c8ad06d179e "Provenance Working Group" . "false"^^ . "rna" . . . . . . . . . . . . "celia.michotey@inrae.fr" . "false"^^ . . . _:N0e2c5ce3383d4675ac3f60b4df7dc0f7 . "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies."^^ . "false"^^ . . . . . "false"^^ . "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information."^^ . "nfdi4ing" . . . "https://www.gwascentral.org/marker/"^^ . . . . . "compartment" . . . . . "sweet.reah" . "Synthetic Binding Protein Protein Scaffold" . . "Schema.org" . "enhancer" . . . "^[1-9]\\d*$"^^ . . "true"^^ . "sophatmol" . . . . . . "https://gtdb.ecogenomic.org/tree?r=$1"^^ . . . "David Brodbelt" . "structure" . "false"^^ . "sorealo" . . . . "GXA Expt" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Binary"^^ . . . "^\\d{7}$"^^ . . . . "annotation" . "state realm" . . . . . . . . . . . . . . "bibliography/documents" . "lido.resourcerepresentation" . "Equipment"^^ . . "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets."^^ . "https://www.wikidata.org" . . "1050"^^ . "Molecular Modeling Database" . . . . . . "A language for validating RDF graphs against a set of conditions"^^ . "^\\d{7}$"^^ . . "UniParc" . . . . . . . . "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid="^^ . . "sage.socialsciencethesaurus" . . "genome" . . . . . "https://bioregistry.io/go.rule:"^^ . . . "OncoMX Dataset" . . . "nif.grossanatomy" . "quantification" . "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1"^^ . "genetic variation" . "Beta Cell Biology Consortium" . "Archäologisches Museum Hamburg – Stadtmuseum Harburg/Helms-Museum: Material terms" . "animal organ development" . "Tetrahymena Genome Database" . . "genome" . . . "false"^^ . . "jcm" . "CIViC Variant Group" . . . . . . "rna" . . . . . . . "smid.detail" . "Etsuko Yasugi" . "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id="^^ . . "structure" . "false"^^ . . . "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . "false"^^ . . . . . . "An ontology to describe standards related to Industry 4.0 and Smart Manufacturing"^^ . . . . "nucleotide" . . . . . "genome/gene" . "The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes."^^ . . . . "InterLex" . . "jupp@ebi.ac.uk" . . "RXCUI" . "d.e.starns@liv.ac.uk" . "BaseUnit"^^ . . "false"^^ . "true"^^ . "Ambrose Carr" . . . . . "ls-c35719-120"^^ . . "The Simplified Upper Level Ontology (SULO) is ontology with a minimal set of classes and relations to guide the development of a personal health knowledge graph. [from homepage]"^^ . "^(MAM\\d{5}\\w)|(MAR\\d{5})$"^^ . . . . . . "https://raras.org/property/$1"^^ . . . . "The International Standard Book Number (ISBN) is for identifying printed books."^^ . . . "biomedical science" . "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"^^ . "Gramene protein" . . . "ess" . . _:N4b8f24d0cf534bcdb108dc806821bdf7 "brennan.thomas@epa.gov" . . . "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md"^^ . . . "Diagnostic and Statistical Manual of Mental Disorders (5th Edition)" . "fid baudigital" . . . "vipr" . . "Virtual International Authority File" . "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis."^^ . . . . . . . . . "s4watr" . . "https://www.icd10data.com/search?s=$1"^^ . "Method"^^ . . . . . "https://mmp.sfb.uit.no/databases/mardb/#/records/$1"^^ . . . "false"^^ . . . "false"^^ . . "https://deims.org/taxonomy/term/$1"^^ . . . "chemical" . . . . "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union."^^ . "BandLimited"^^ . . "obo" . "https://bioregistry.io/csd:"^^ . . . . . "http://sweetontology.net/phenCryo/$1"^^ . . . "eukaryotic" . . . "http://purl.org/dc/dcmitype/"^^ . . "false"^^ . . . "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" . "false"^^ . . . . "The HuBMAP donors dataset contains demographic and clinical metadata for individuals who donated tissue samples. Each donor has a unique identifier used to link them to their associated tissue samples and derived experimental data."^^ . . "false"^^ . "https://w3id.org/mobilitydcat-ap/mobility-theme/"^^ . . . . "health science" . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . . "http://purl.obolibrary.org/obo/HsapDv_$1"^^ . "NFDI4Microbiota Collection" . "fair data spaces" . "^\\d+$"^^ . "The ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology provides a taxonomy and thesaurus of photon and neutron (PaN) experimental techniques. Based mainly on accelerator-based light sources and neutron facilities, the primary use of the ontology is to enhance the FAIRness of PaN data catalogues services. The ontology defines specific techniques in terms of more general technique classes and provides synonyms and references."^^ . "vbo.issue" . . . "false"^^ . . "botany" . "false"^^ . "^\\d{7}$"^^ . . . . "Sciflection" . "TF101014"^^ . . "Craft types which survive as wrecks for the RCHME's maritime record and can be used to describe types of ship. English Heritage takes a leading role in setting standards for recording the built and buried heritage. By setting standards that can be adopted by everyone, we can make sure that all records are consistent. In other words, if everyone uses the same words to describe the same monument, archaeological object, building material, etc, then anyone using this common language can easily index, retrieve and understand these records. With this aim in mind, English Heritage is continually developing new thesauri to provide structure and guidelines for the standardisation of terms to be used when creating new records of the past. Now, in our drive to disseminate these standards and promote their wider use, we are making available seven separate online thesauri. A tailor-made suite of programs has been developed, which uses a database to create a series of web pages for any chosen thesaurus. These can be easily accessed using a frames-capable browser and regularly updated as new terms are submitted and approved by our Data Standards Unit.\n\n National cultural heritage thesauri and vocabularies have acted as standards for use by both national organizations and local authority Historic Environment Records but until now have lacked the persistent Linked Open Data (LOD) URIs that would allow them to act as vocabulary hubs for the Web of Data. The AHRC funded SENESCHAL project aims to make such vocabularies available online as Semantic Web resources. SENESCHAL will start with major vocabularies as exemplars and project partners will continue to make other vocabularies available. Other organizations are welcome to make use of the data and services which will be open licensed.\n\n RESTful web services will be developed for the project to make the vocabulary resources programmatically accessible and searchable. These will include the provision to ‘feed back’ new terms (concepts) suggested by users."^^ . "sopropsdis" . . . "social sciences" . "jaxmice" . "Identifiers.org Terms" . "https://mgtbind.pkumdl.cn/compound/$1"^^ . . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes."^^ . . "SECONDARY_CAS_RN" . . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE" . . . "false"^^ . . . "sweet.propi" . . "false"^^ . . "MAM01234c"^^ . . . "nfdi4energy" . . "repository" . "ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases."^^ . _:N31519f825a934a6f9c3efdc7d8dab9b5 "John Wieczorek" . . . . . . . "^\\d{7}$"^^ . "false"^^ . "http://sweetontology.net/phenOceanDynamics/$1"^^ . . . "https://herv.img.cas.cz/s/$1"^^ . "^\\d+$"^^ . . . "true"^^ . . . "http://unite.ut.ee/bl_forw.php?nimi=$1"^^ . . . . . "A collection of graphics that relate to a theme"^^ . . "method" . . "pharmgkb.drug" . "^(\\w+)?\\d+$"^^ . "^(MNXR\\d+|EMPTY)$"^^ . "method" . . . . "cst" . . "sorelt" . "Ontology to describe general clinical studies."^^ . . . "anatomy" . . "Database of Genotypes and Phenotypes" . "structure" . . "A formal ontology of phenotypes observed in fission yeast."^^ . . . . "ontology" . . "p.buttigieg@gmail.com" . . "COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer"^^ . . "http://metlin.scripps.edu/metabo_info.php?molid=$1"^^ . . . "International Standard Name Identifier" . "0000215"^^ . . . . . . . . "ess" . . . "false"^^ . "functional domain" . . . . . "http://sweetontology.net/propConductivity/"^^ . "^\\d+$"^^ . . . . "http://purl.obolibrary.org/obo/XPO_"^^ . . . . . . . "KEGG pathway" . . . . "http://purl.obolibrary.org/obo/MS_$1"^^ . "sophatmoc" . . "SAREF extension for Smart City" . . "evolution" . . . . "MCDS_S_0000000001"^^ . . "human" . "1755"^^ . "http://www.genome.jp/dbget-bin/www_bget?ec:$1"^^ . . . . . . . . . . . . . "https://bioregistry.io/prints:"^^ . . "https://www.lidcast.co.uk/ontologies/RE#"^^ . . . . . "^C\\d+$"^^ . . . . "false"^^ . "dome" . . "false"^^ . . "ontology" . "Japan Chemical Substance Dictionary" . "insertion" . . "Genatlas" . . "^bt\\d+$"^^ . . "insdc.run" . "Q81661651" . "ggplot2"^^ . . "f.limani@zbw.eu" . "1000290"^^ . "http://purl.obolibrary.org/obo/EUPATH_"^^ . "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis="^^ . . . "false"^^ . "LINCS Data" . "^BGC\\d{7}$"^^ . . . . "nih initiative" . "life science" . "P53350"^^ . "centrally registered identifier" . . "https://www.addexbio.com/productdetail?pid=$1"^^ . . "T00148"^^ . . . _:Nc05c4eb528404e2185bb3944931bf88b . "sstoss" . . "https://ordb.biotech.ttu.edu/ORDB/Data/"^^ . . . . . "Human BioMolecular Atlas Program Collection" . "https://w3id.org/reproduceme#$1"^^ . "0000690"^^ . . . . "Indian Crop Phenome Database Project" . "interaction" . . "http://cdb.iso.org/lg/$1"^^ . . _:Nf21449f8c42747f98b0f7e4659795d1a . "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace."^^ . . "sgd-helpdesk@lists.stanford.edu" . . "classification" . "osf" . . . "property" . "Identifier for a place in iNaturalist"^^ . "sweet.relph" . . . . . . "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr="^^ . . "bugbase.expt" . . "ocdo" . . . . . . "A concept scheme that enumerates the educational uses of a learning resource."^^ . . "03yrm5c26"^^ . . "interaction" . . . "cro" . . "pharmacogenomics" . . "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations."^^ . . "FlyBase is the database of the Drosophila Genome Projects and of associated literature."^^ . . . . . . "education" . "roleo" . . "false"^^ . "true"^^ . . . "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id="^^ . "^\\d{1,7}\\-\\d{2}\\-\\d$"^^ . "gene" . "dna" . . "http://purl.obolibrary.org/obo/XL_$1"^^ . "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations."^^ . . . . . . . "brenda.ligandgroup" . "true"^^ . "false"^^ . "multigene families" . "PREFER Ontology" . . . . . . . . . . . "Wikipedia" . . . . "^\\d{7}$"^^ . . . . . "serhii.nazarovets@gmail.com" . . "https://www.dublincore.org/specifications/skos-thes/ns/#$1"^^ . "gnd" . . . . "^[0-9a-f\\-]+$"^^ . . "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"^^ . . . . . "ensembl" . "http://w3id.org/nfdi-de/dcat-ap-plus/latest/class/$1"^^ . . "http://purl.org/obo/owlEOL_$1"^^ . . . "https://www.enzyme-database.org/query.php?ec=$1"^^ . . "Variables relations for Social Sciences research data" . "^[a-f0-9]{32}$"^^ . . . "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i="^^ . "horizon_discovery" . . . . "sweet.strr" . "AGRICOLA_ID" . "https://massbank.jp/MassBank/RecordDisplay?id="^^ . "miriam.collection" . "^\\d{7}$"^^ . . . "ontology" . . . . "http://genomics.senescence.info/diet/details.php?id="^^ . "ontology" . "A mid-level ontology for representing metadata related to NFDI resources, including individuals, organizations, projects, data portals, and more"^^ . "soreaah" . . . "carnegie.stage" . . . "https://github.com/monarch-initiative/mondo/issues/$1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Physical"^^ . "ocean floor" . . "false"^^ . "obo" . . . . . "obo" . . . . "schema" . . . . "SWEET Ontology Representation Data Servcie Analysis" . . . "Ontology for Nutritional Studies" . . "drugbank.category" . "http://sweetontology.net/propConductivity/$1"^^ . . . . "false"^^ . . "image/movie" . . "A UUID for an open educational resource indexed in the Data Liteacy Alliance (DALIA) web application"^^ . . "patent" . . . "mass spectrum" . . . . . . "TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)"^^ . "false"^^ . "false"^^ . "Patrice Buche" . "00042"^^ . "false"^^ . . "http://sweetontology.net/stateSpace/"^^ . . "Sum"^^ . "The Statistical Methods Ontology" . . . . . . . . . . "https://ligandbook.org/package/$1"^^ . . . . "1000"^^ . . "Resource"^^ . "carrine.blank@umontana.edu" . . "Sensor, Observation, Sample, and Actuator Ontology" . . "http://www.ecogene.org/gene/"^^ . . "modification" . "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1"^^ . "cristhian.paredes@bipm.org" . . "false"^^ . . . "Library of Congress Resource Types Scheme" . . . . "human geography" . . "unit" . "wwf.ecoregion" . . "KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links."^^ . . . . . . . . "obo" . . "health science" . . . . . . . "stock" . "0000423"^^ . . . . . "http://purl.obolibrary.org/obo/EPO_"^^ . "^\\d+$"^^ . . . "life science" . . . "educational science" . "identifier for a person, used by ResearchGate profiles"^^ . . "International Standard for Intelligent Information Request and Delivery Core Ontology" . . . "^\\d+$"^^ . "false"^^ . . . "http://purl.bioontology.org/ontology/NDDF/"^^ . . "false"^^ . "Identifiers for specific experimental assays that serve as evidence for immune-related studies."^^ . . "phenotype" . . . . "datacite" . . "biocompute" . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information."^^ . "cc.legacy" . . "false"^^ . . "BioCatalogue Service" . . "earth sciences" . . "biomedicine" . "yocto"^^ . "protocol registration" . . "false"^^ . "false"^^ . . "gfo" . . . . . . "A controlled vocbualry of higher education resource types"^^ . "obo" . . "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc="^^ . . "false"^^ . "vario" . "pmr.workspace" . . . "^\\d+$"^^ . "Theiler Stage" . "seh@ebi.ac.uk" . "https://fairsharing.org/"^^ . "https://www.ebi.ac.uk/ols4/ontologies/fma/terms?obo_id=FMA:"^^ . . . . . . . "false"^^ . . "uniprot.taxonomy" . "http://purl.obolibrary.org/obo/HAO_$1"^^ . . . . . "090924"^^ . "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1"^^ . "^\\d+$"^^ . . "0000001"^^ . "Asteraceae Genome Database - Plant" . . . . "https://www.ebi.ac.uk/metagenomics/projects/$1"^^ . . . "GHGA Metadata Schema" . . . "http://purl.org/spar/datacite/"^^ . "N0000001662"^^ . . . "somaeq" . "false"^^ . . "SKOS concept collections held in the NERC Vocabulary Server. A concept collection is useful where a group of concepts shares something in common, and it is convenient to group them under a common label. In the NVS, concept collections are synonymous with controlled vocabularies or code lists. Each collection is associated with its governance body. An external website link is displayed when applicable."^^ . . "^\\d{7}$"^^ . _:N1664ad32878d4b7aaf2e926387761e88 . . . "realm" . . "structure" . "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"^^ . . . . _:N5da1bf67417a42fcbbcf72d8075e9d1a . . . "infection process" . . . "drug discovery" . . . . "0000079"^^ . . "ricegap" . . "pathogen" . . . . "faseb list" . "drug" . "E-cyanobacterium Experimental Data" . . . . . "http://purl.org/heritagedata/schemes/eh_tmt2/concepts/$1"^^ . "^CDBP00\\d{6}$"^^ . . . . . . . . . "http://purl.obolibrary.org/obo/PCL_"^^ . . . "false"^^ . . . "0002959"^^ . "http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae5.owl#$1"^^ . . . . . "http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/"^^ . . . . . . "Life cycle stages for Medaka"^^ . "The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.\n\nThe Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:\n\n- [ZFIN](https://zfin.org) - Zebrafish Information Network\n- [WormBase](https://wormbase.org)\n- [MGI](https://www.mgi.org) - Mouse Genome Informatics\n- [RGD](https://rgd.mcw.edu) - Rat Genome Database\n- [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database\n- [FlyBase](https://flybase.org)\n- [Xenbase](https://www.xenbase.org)"^^ . . . "https://coicatalogue.uc.pt/index.php?t=specimen&COINumber="^^ . _:Ne800fdfb6d1d4197918a9ed59194f72e "data@food.gov.uk" . "EUbOPEN is a project focusing on organizing chemogenic library collections, advancing chemical probe discovery, profiling bioactive compounds, and making project data more accessible."^^ . "assay" . . . "SNOMEDCT_US_2016_03_01" . . . . . . . "3"^^ . . "ontology/terminology/nomenclature" . . . "3SBPLMKKVEVR"^^ . . . "false"^^ . . . . . . . "omia.variant" . "destatis.subject" . . "SWEET Ontology Property Space Location" . . . "An RDF vocabulary for the taxonomy of all forms of life"^^ . . _:N91b5abfbd92f4603949fbcfa7348738f "J.Bard@ed.ac.uk" . "false"^^ . "false"^^ . . "SWEET Ontology Property Mass" . . . . . "false"^^ . . "BERD@NFDI Collection" . . . . . . . "Leif Oxburgh" . . "https://pharmacome.github.io/conso/$1"^^ . "refseq" . . . . . . . "^VAs-\\d{2}(?:\\.\\d{2})?$"^^ . . "https://query.biodeep.cn/metabolite/"^^ . . "false"^^ . "https://ontome.net/project/$1"^^ . "SASDAX8"^^ . . . "false"^^ . . "cosmic.cell" . . . "classification" . "signor" . "https://gtdb.ecogenomic.org/tree?r="^^ . "^[a-z0-9\\-]+$"^^ . . . . "Todd M Lowe" . "ess" . "https://gepris.dfg.de/gepris/projekt/"^^ . "evorao" . . "signaling-gateway" . . . "FlyBase_Cell_line" . "open educational resources" . . "^[1-9]\\d{0,7}\\-\\d$"^^ . "chemistry" . . "ontology" . "false"^^ . . . . . . _:Nc787b3b9e76e400ca815e4cf379a481b "coi@bot.uc.pt" . . "https://massbank.us/spectra/display/$1"^^ . . . "https://www.uniprot.org/uniparc/"^^ . . "disease phenotype" . "http://sweetontology.net/human/$1"^^ . "architecture" . . . "false"^^ . "GeneCards Gene" . "https://redoxibase.toulouse.inrae.fr/display_perox/view_perox/"^^ . . "John L. Markley" . "repository" . "pmr" . . . . . "^\\w+$"^^ . "dna" . . "Indian Crop Phenome Database Study" . . . . . "false"^^ . "fair data spaces" . "DOULIX lab-tested standard biological parts, in this case, full length constructs."^^ . . "JMChandonia@lbl.gov" . . "pepbank" . "https://vocabularies.cessda.eu/vocabulary/AggregationMethod?lang=en#code_"^^ . "https://osdr.nasa.gov/bio/repo/data/missions/"^^ . "sweet.mac" . "false"^^ . . "Beta Cell Genomics Ontology" . . . . . "https://www.pombase.org/gene/$1"^^ . . . . . "Identifiers describing conditions of access to an object (login) as defined by the [OER metadata group](https://oerworldmap.org/resource/urn:uuid:fd06253e-fe67-4910-b923-51db9d27e59f)."^^ . . . . "false"^^ . . . . . "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1"^^ . . "health/disease" . . . "botany" . . . "ontology" . . . "AlgebraicSolution"^^ . . . "false"^^ . "sweet.stro" . "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources."^^ . "natural science" . . "NFDI4Objects Collection" . "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites."^^ . "1455"^^ . "nutritional science" . . "false"^^ . . . . "SNOMEDCT_US_2022_12_31" . . "http://gov.genealogy.net/ontology.owl#"^^ . . "interfil" . . . . . "obo" . . . "fernanda.farinelli@gmail.com" . . . . . "andreas.ledl1@fhnw.ch" . . . "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1"^^ . "0005147"^^ . . . "ASRP1423"^^ . . . . . . "metabolomics" . . . "Ebrahim Nourouzi" . . "Joao Pedro de Magalhaes" . . "hl7.v2codesystem" . "icdc" . . . "Vertebrate Skeletal Anatomy Ontology" . . "metabolomics" . . . "TogoVar" . . . "cgsc" . . "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"."^^ . . . "^\\w+$"^^ . . . "rna" . . . "https://data.chembiosys.de/tags/"^^ . "^DIP(\\:)?\\-\\d{1,}[ENXS]$"^^ . "Pantelis Topalis" . . . "ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons."^^ . . . . "disorders" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Difference"^^ . . . . . "protein" . . . . "facility" . "3d structure databases" . . "cora" . "IUPAC Gold Book Compendium of Chemical Terminology" . "sostsb" . "transport and kinetic data" . "PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties."^^ . . "biomedical science" . "The Digital Object Identifier System is for identifying content objects in the digital environment."^^ . . "pseudogene.org" . . . . "imsr_tac" . "Nucleotide" . . _:N6129e1665deb48fda27920131fbf7166 "NLM Customer Service" . . "false"^^ . . "hms.lincs.cell" . . . "^\\d+$"^^ . . . . "BRAF_HUMAN"^^ . . "false"^^ . . . . "skos.thes" . . . . . . "experimental measurement" . . "BRIP1"^^ . . "structure" . "false"^^ . . . . . . . . _:Nc4823c0e62ff4867993303e03e06bc6b "kasschau@cgrb.oregonstate.edu" . . . . _:N30c45d8e97fd43ec8ee0f224d34d7ec5 "triebel@snsb.de" . . . . "https://www.ensembl.org/id/$1"^^ . . "http://purl.obolibrary.org/obo/HSO_$1"^^ . "ontology" . . "https://go.drugbank.com/bio_entities/$1"^^ . "http://www.cathdb.info/cathnode/"^^ . . . . . "ontology" . . "^\\d+$"^^ . "noemi.betancort@suub.uni-bremen.de" . . . . "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases."^^ . . . . "credit" . "project" . "000000159"^^ . . "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code="^^ . "false"^^ . "MultiCellDS collection" . "String"^^ . . "civil engineering" . _:N53b2f4fde30045d19b306d28dc19c6af "Lars Juhl Jensen" . . . "phenotype" . "0000609"^^ . . "protein" . . "sugarbind" . "The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology."^^ . "^[\\w\\-:,]{3,64}$"^^ . "SpBase" . . . "WBls" . "The material properties ontology provides the vocabulary to describe the composition of building elements."^^ . "false"^^ . . "3d structure" . . "Cyril Pommier" . "inhibitors" . . "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps."^^ . "re3data" . . . . . "^WP\\d{1,5}(\\_r\\d+)?$"^^ . . "Abatement"^^ . . "phenolexplorer" . "arXiv" . . "Human Protein Reference Database" . . "false"^^ . "aisling.doyle9@gmail.com" . "VMH Gene" . . "^HBG\\d+$"^^ . "subject" . "https://www.dsmz.de/collection/catalogue/details/culture/"^^ . . "http://sweetontology.net/stateRoleImpact/"^^ . . . . . . "https://gudmap.org/id/"^^ . "natural language processing" . . . "http://www.informatics.jax.org/accession/MGI:$1"^^ . . . "IMGT HLA" . . . _:N2584e57d7e414a2fb23af4778bbdb289 . . . . "mediadive.solution" . . . . . . "metatlas.reaction" . . . . "http://data.food.gov.uk/codes/foodtype/id/"^^ . . "An alternative or synonymous prefix" . . _:N0279af5fe9564415899de81f5ed45ad1 "Jeff Horsburgh" . . . . . . "Persistent IDentifiers for Semantic Artifacts" . . "false"^^ . . "http://www.treefam.org/family/$1"^^ . . "0000095"^^ . "false"^^ . . . "jmedina@ebi.ac.uk" . . "https://mycobrowser.epfl.ch/genes/"^^ . "m4i" . "http://www.cazy.org/$1.html"^^ . "^NCT\\d{8}$"^^ . . . . . . "Health Surveillance Ontology" . . . . . . . "3d structure databases" . "sequence" . . . . . "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1"^^ . . . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Network" . . "Ontology for Biomarkers of Clinical Interest" . . . . "topics" . . . "health science" . . . . . . "citedcat" . "ontology" . "^[A-Za-z0-9]+$"^^ . . . "ShareLoc" . "PKDB00198"^^ . "afo" . . . . "^[-\\w]+(?:\\/[-\\w]+)(?:\\/\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b)$"^^ . "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations."^^ . . . . . . . . . . . "disease" . "ontology" . . "http://sweetontology.net/matrWater/"^^ . . . . . "http://purl.obolibrary.org/obo/MC_"^^ . . . "NeuroLex Dysfunction" . "bodc.unit" . "^\\d+$"^^ . . . . . . . . . . "danbri@w3.org" . . . "generic" . "BTO" . "animal" . . . . . . . . "battinfo" . . "false"^^ . "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration."^^ . _:Neeeb0bc6134b4dc8bd2380da5d035766 "tim.vandermeersch@gmail.com" . . "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."^^ . . . . . . . "Genetics Home Reference" . . . . . "dblp.schema" . . . "false"^^ . "zhengj2007@gmail.com" . "engineering" . . . "http://purl.obolibrary.org/obo/WBls_"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Materials"^^ . . . . . . "false"^^ . "https://geneontology.org/GO_REF/"^^ . "DataProcessing"^^ . . . "fix" . . "http://w3id.org/nfdi-de/dcat-ap-plus/latest/class/"^^ . . . "AgriculturalProductionFacility"^^ . "euid" . "https://bioregistry.io/kim.conditionsofaccess:"^^ . . . "^[0-9]+$"^^ . . "Ontology for Modeling and Representation of Social Entities" . . . "Mark Engelstad" . "false"^^ . . . . . . . . "ontology" . "ontology" . "false"^^ . . "The TDWG Vocabulary Maintenance Standard consists of a single document: the Vocabulary Maintenance Specification."^^ . "identifier for a person, in the Loop database of researcher impact"^^ . "Ontology for vector surveillance and management" . . . . . "realm" . . "cheminformatics" . . "representation scientific function" . . "https://raid.org/"^^ . . . . "false"^^ . . "true"^^ . . . "wdrs" . . . . "Kim Durante" . "bibliography/documents" . . . "srvoss@uky.edu" . . . "proteomics" . . . . "^\\d{4}$"^^ . . "taxonomy" . . "http://sweetontology.net/matrParticle/$1"^^ . "false"^^ . . "https://bioregistry.io/mesh.2012:"^^ . "http://purl.oclc.org/NET/UNIS/fiware/iot-lite#$1"^^ . . . "apaonto" . . . . . . . "false"^^ . . . "eagle-i" . "Nucleotide Sequence Database" . . . . . "SWEET Ontology Phenomena Atmosphere Transport" . "false"^^ . . . "sequence" . "nuclear" . "gene expression" . . . . "alayne.cuzick@rothamsted.ac.uk" . "biology" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Feature"^^ . . . _:Ncef36e84801e493baed851e34bf6c256 . "numerical identifier for a taxon in ZOBODAT, a bibliographic database of mostly German-language works on zoology"^^ . . . . "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."^^ . "Oryzabase Strain" . "dcat" . . . . "Chicken Gene Nomenclature Consortium" . . . "false"^^ . . "proteins" . . "anatomy" . . "biopragmatics/bioregistry/424"^^ . "Lepidoptera Anatomy Ontology" . . . "computer science" . . . . "^[0-9]*$"^^ . "post-translational modification site prediction" . . . . . "digital planning and construction" . "http://purl.obolibrary.org/obo/ICO_"^^ . "Bibliographic Reference Ontology" . . . . "http://www.kegg.jp/entry/$1"^^ . . "http://purl.org/dcx/lrmi-vocabs/interactivityType/$1"^^ . . . . "PR" . . . . . . . "cryopreservation" . . "engineering" . . "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1"^^ . "https://mmp.sfb.uit.no/databases/marfun/#/records/"^^ . . . "AirSeaExchange"^^ . . . "0001000"^^ . . . "false"^^ . "false"^^ . "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . . . "rna" . "^\\d{7}$"^^ . "false"^^ . . "regulation" . . . . . "bioresource" . . . . "false"^^ . . . . "genome" . . "false"^^ . . . "ECU03_0820i"^^ . . "http://data.europa.eu/8mn/euroscivoc/$1"^^ . "Sam Griffiths-Jones" . . "lido.termmaterialstech" . "false"^^ . "CompoundEquivalence"^^ . "false"^^ . . . . "Anticyclone"^^ . . . . . "https://www-is.biotoul.fr/scripts/ficheIS.php?name="^^ . "chemical compound" . . . . . "gene" . . "bibliography/documents" . _:N36d0ccda8e024eb39dd1f6ae17e76013 "Laura Molloy" . "An investigation in the ChemBioSys data platform"^^ . . "chemfont.ontology" . "laevis" . . "DRAMP00005"^^ . "bioimaging" . "erm" . . "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information."^^ . "^\\d+$"^^ . . . . . . . "repository" . . . . "LINCS_LDP" . . "lectins/172"^^ . "Sierra Moxon" . . . . . . "https://e-cyanobacterium.org/models/model/"^^ . "The DevTox Project harmonizes the nomenclature used to describe developmental anomalies in laboratory animals, assists in the visual recognition of developmental anomalies with the aid of photographs, and provides a historical control database of developmental effects in laboratory animals."^^ . _:N8b5e9c9685c049a78900077a1a4f8786 . . "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."^^ . . . . . . . . "biodivthes" . . . "false"^^ . _:N0ddaba33b3cf419b81cacce4a1a77278 "khes@loc.gov" . . "embryonic stem cell" . "http://champ-project.org/images/ontology/cao.owl#CAO_"^^ . . . "sorelcl" . "false"^^ . "Edward A Dennis" . "^AS\\d{6}$"^^ . . "https://biopragmatics.github.io/providers/cvx/"^^ . . . "SWEET Ontology Relationships Provenance" . "http://mlcommons.org/croissant/"^^ . "false"^^ . "An ontology with predicates to formalization of the concept of mentions. The mentions may be either explicit (e.g. as when well stated into an article \"Dr. Johnson's groundbreaking research on climate change\") or implicit (e.g. such as discussing \"seminal studies in the field\"). MiTO contains the object property mito:mentions and its inverse mito:isMentionedBy."^^ . . "sorepsf" . "sophatmo" . . "dna" . . . . "fbbi" . "true"^^ . . "https://www.biolegend.com/Default.aspx?ID=6664&productid=$1"^^ . . "https://ceds.ed.gov/element/$1"^^ . . . . . "https://explorer.opentrials.net/trials/$1"^^ . . . "https://suprabank.org/additives/"^^ . . . . "56"^^ . . "representation time" . . . . "structure" . . . "Mathias Brochhausen" . . "An ontology that formalizes the genomic element by defining an upper class genetic interval"^^ . . . . "protein" . "coypu" . . "https://www.flymine.org/come/entry?gn=$1"^^ . . "https://www.aapc.com/codes/cpt-codes/$1"^^ . . . . "has_service"^^ . . . . . "SWEET Ontology Phenomena Fluid Transport" . . . . "true"^^ . . . . . . . . . "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"^^ . . "gene" . "ontology" . "false"^^ . . . . . "true"^^ . "gene name" . "A typology of main themes or subjects of data."^^ . . . "https://www.fisheries.noaa.gov/species/"^^ . . . "chemistry" . "CIViC Evidence" . "CanBeApproximated"^^ . . "SWEET Ontology Human Agriculture" . . . "FundRef" . "phenotype" . "AvailablePotentialEnergy"^^ . "http://modelseed.org/biochem/compounds/$1"^^ . . "^\\d{7}$"^^ . . . "^\\d+$"^^ . "^\\d+$"^^ . . . "^\\S+$"^^ . "false"^^ . . "false"^^ . . "life sciences" . "Cristhian Paredes" . . . . "KnockRBP" . . . . . . . "https://vocabularies.cessda.eu/vocabulary/SummaryStatisticType?lang=en#code_$1"^^ . . . "Creative Biolabs protein" . . . "false"^^ . . . "bibliography/documents" . . . "http://lod.taxonconcept.org/ontology/txn.owl#$1"^^ . "https://www.iana.org/assignments/media-types/$1"^^ . . "https://www.inaturalist.org/taxa/$1"^^ . "http://zfin.org/"^^ . . "false"^^ . "322"^^ . "false"^^ . "spar" . "Arun Prasad Pandurangan" . . "wdr" . . "Sylvie Ricard-Blum" . . "vaccine" . . . . . "http://purl.obolibrary.org/obo/GEO_"^^ . . . . "genome" . "https://www.lidcast.co.uk/ontologies/RE#$1"^^ . "https://w3id.org/nmdc/"^^ . "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1"^^ . "glida.gpcr" . . . . . "NBR016799"^^ . "http://uri.gbv.de/terminology/datacite-contributortype/"^^ . . . . "metadata" . "http://www.labesc.unirio.br/InfoSecSoS#$1"^^ . "^\\d+$"^^ . . . . . . "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1"^^ . . . "NCBI_Taxon_ID" . "Carrine Blank" . "Climate and Forecast Standard Names" . "^\\d+$"^^ . . "lw" . . . "false"^^ . "omics" . "MOSAiC Ontology" . . . "ClinVar Variation" . . "ontology" . . . "ensemblglossary" . . . . "PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources."^^ . . "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels."^^ . "HGNC_GROUP" . "ohara@kazusa.or.jp" . "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID="^^ . "canBePerformedBy"^^ . "spdx.term" . . . "Clytia hemisphaerica Development and Anatomy Ontology" . . "Eric Sid" . "false"^^ . . . . . . . . . "true"^^ . "fid move" . . "hcao" . . "metabolite" . . . "repository" . . "893"^^ . . . "Molecular Signatures Database" . . "sophatmos" . . . "false"^^ . . "PF11779"^^ . . . . . . . "CEMS"^^ . . . "pancreas" . "dialnet.author" . "semantic web" . "annotation" . . . "https://www.metanetx.org/equa_info/$1"^^ . "neuroscience" . . . . . "Database of human Major Histocompatibility Complex" . "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1"^^ . . "^M[0-9]{4,}$"^^ . . . . . . "genome/gene" . . . "true"^^ . "Atoll"^^ . . "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1"^^ . "gene expression" . . . "h_aktPathway"^^ . "genome/gene" . "reactome.pathway" . "AJ Ireland" . . . . . . "dna" . "bibliography/documents" . "2170610"^^ . . "preclinical studies" . . "earth sciences" . . "ontology" . . . "6200"^^ . . . . . . . . . . . . "health science" . . "false"^^ . . . . "Environment Ontology for Livestock" . . "false"^^ . "true"^^ . "A data model describing machine learning experiments"^^ . . "pathway" . "MESH_DESCRIPTOR_UI" . . . . "portal" . "ontology" . . . . . . . . _:N5ecae7ebf543492ca6fbc6f577ae5ece "steve.baskauf@gmail.com" . . . . "false"^^ . "quality" . "https://saref.etsi.org/saref4watr/$1"^^ . "anatomy" . "^GPM\\d+$"^^ . "social sciences" . "1004005"^^ . . . "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line="^^ . . "obo" . . . "ontology" . . . "kim.lp" . . . . . . "LRMI Learning Resource Type Concept Scheme" . "http://uri.neuinfo.org/nif/nifstd/birnlex_"^^ . "0440"^^ . "Identifiers for subjects of experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . "Joachim Kopka" . . . "https://deims.org/dataset/$1"^^ . . "uat" . . . . "The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science."^^ . . . . . "protein complex" . "http://sweetontology.net/phenSystemComplexity/$1"^^ . "An additional Japanese clinical trial registry"^^ . . "cabi" . "OncoTree" . "FMAID" . . . . . . "miaa" . "http://data.europa.eu/eli/ontology#$1"^^ . "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity."^^ . . "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1"^^ . . . "false"^^ . . . . "https://plantreactome.gramene.org/content/detail/$1"^^ . "ontology" . . . "Matt Jeffryes" . "sequence" . . . "0007114"^^ . "experimental measurement" . . "https://dblp.org/pid/$1"^^ . "rgd.qtl" . . . "false"^^ . "domain" . "false"^^ . . . . . "http://purl.org/ejp-rd/vocabulary/"^^ . "http://emmo.info/emmo/cif-core#$1"^^ . "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)."^^ . . . . . . . . . "maaya.m466@gmail.com" . . . "bartoc" . "MIBiG (Minimum Information about a Biosynthetic Gene Cluster) is a data repository and associated data standard designed to describe biosynthetic gene clusters involved in the production of specialized metabolites. It also stores data on measured biological activities and links to other resources such as NCBI, NPAtlas, and ChEBI. MIBiG is used as a reference database, knowledgebase, and training dataset for machine learning."^^ . "https://gxy.io/GTN:"^^ . . "sophg" . . . "http://uri.gbv.de/terminology/datacite-descriptiontype/$1"^^ . . . . . "ontology" . "https://doulix.com/biomodules/"^^ . "Eukaryotic Linear Motif Resource" . . . . "000072"^^ . . "DataONE" . . . "https://uts.nlm.nih.gov/uts/umls/vocabulary/MTH/"^^ . . "SNOMEDCT_2010_1_31" . . . "A specific vector technology"^^ . . . . . . . "Crop-specific trait ontologies enhance the interoperability and effectiveness of data exchange between the data sources which adopt it, by providing standard concepts that are use to describe phenotypes stored in those sources. As one of them, the Cassava Ontology is actively used and shared in different databases such as the BMS (Breeding Management system) of the IBP or the CassavaBase. Cassava, a major staple crop, is the main source of calories for 500 million people across the globe. A perennial woody shrub native to Latin America, cassava is primarily grown as an annual crop in the humid tropics. A cash crop as well as a subsistence crop, cassava's large edible starchy roots are a source of low-cost carbohydrates for millions. Cassava end products range from fresh roots cooked, boiled, baked or fried at the household level, to highly processed starch as a food additive."^^ . . "open educational resources" . . . . "oba" . "false"^^ . . . . . "obo" . . . . . . "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$"^^ . "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid="^^ . . . . . "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research."^^ . . "Tiago Lubiana" . . . "https://lincs.hms.harvard.edu/db/datasets/$1"^^ . . . . . "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . "false"^^ . . "false"^^ . . . "HUMAN0000174"^^ . "pathwaycommons" . "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)."^^ . . . . . . . . . "true"^^ . . "100101"^^ . "FlyMine Chromosome Band" . . . . . "false"^^ . . "This ontology extends the SAREF ontology for the automotive domain. This work has been developed in the context of the STF 566, which was established with the goal to create four SAREF extensions, one of them for the automotive domain."^^ . . . "omp" . . . . "https://cropontology.org/rdf/CO_350:"^^ . . "046-19"^^ . . . . . . "https://vocabularies.cessda.eu/vocabulary/KategorienschemaWahlstudien?lang=en#code_"^^ . . . . . "Supplier of mice for research purposes. [from RRID]"^^ . "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$"^^ . . . "grin" . . . . "An identifier for a country in numeric format per ISO 3166-1"^^ . "^\\d+$"^^ . . . "^\\d{7}$"^^ . "http://sweetontology.net/reprMath/$1"^^ . . "Accumulation"^^ . . "drug interaction" . "engineering" . . "abcd" . . "030719"^^ . "false"^^ . . "18030"^^ . "wave" . "^\\d{7}$"^^ . . . "^[A-Z0-9]+$"^^ . . . . "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration."^^ . . . . . . "^\\d{7}$"^^ . "https://w3id.org/class/sectors/"^^ . . . . . "BioPortal Prefixes" . . "^\\d{8}$"^^ . "taxonomy" . . . "Joint Genome Institute Proposals" . "exposure" . _:Nf05d767d931e4783825bc60a5bad9396 . "regulation" . . . . . . "ontology" . . . "aBq"^^ . . "asap" . "obo" . . "omics" . . . "MatrixDB" . . "http://stitch.embl.de/interactions/$1"^^ . . "annethessen@gmail.com" . . . "https://www.ebi.ac.uk/pdbe/entry/emdb/$1"^^ . "commerce" . . "EAWAG Biocatalysis/Biodegradation Database reaction" . . . "rare disorder" . "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy."^^ . . . "false"^^ . . "Angelina Kraft" . "nfdi4cat" . "gene expression" . "gene" . . . "omics" . "MarkerDB is a freely available electronic database that attempts to consolidate information on all known clinical and pre-clinical biomarkers into a single resource. It provides identifiers for known clinical and pre-clinical biomarkers. Each entry provides detailed annotations, including biomarker descriptions, associated conditions, specificity, sensitivity, molecular structures, chromosomal locations, and clinical approval status."^^ . "^\\d+$"^^ . "http://www.w3.org/1999/xhtml/vocab#"^^ . "PSEEN0001"^^ . . . . . . "bel" . . . "^[0-9A-Za-z\\-.\\+]+$"^^ . . . . "live animal" . . "PID4NFDI Providers" . . "https://ieeexplore.ieee.org/document/$1"^^ . . . "sweet.st" . "GOLD genome" . "The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format"^^ . . . "00098e55"^^ . "^\\d+$"^^ . "soldatova.larisa@gmail.com" . . . . _:Nf427a4d6ec18495ebe911761ef9e26e8 . "eukaryotic" . . . . . . . "CHEBI" . . . . "biomedical science" . "Carlos Moreno" . "genome" . . . . . "https://www.w3.org/2022/wot/tm#$1"^^ . . "^\\d{7}$"^^ . . . "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions."^^ . . . "The Digital Competence Framework for Citizens standard list identifies the key components of digital competence in 5 broader, and a total of 21 narrower areas, with eight proficiency levels for each concept and a few contextualising examples of use. It is maintained by DG EMPL and published by the Publications Office of the European Union on the EU Vocabularies website."^^ . "small molecule" . "false"^^ . "phenomena" . "Ontology of Zebrafish Experimental Conditions"^^ . . "plant" . "The Soybean Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information."^^ . "1.10.10.200"^^ . . . "sequence" . "Jaime Huerta-Cepas" . . "Dengue Fever Ontology" . . . . "Assembling the Fungal Tree of Life - Taxonomy" . . "[KonsortSWD (Strengthen, Widen, Deepen)](https://www.nfdi.de/consortia-konsortswd) is the German National Data Infrastructure (NFDI) consortium for social, educational, behavioral, and economic sciences. This collection reflects the prefixes collected by NFDI Section Metadata for ontologies and controlled vocabularies used by members of the consortium." . . . . "jstor" . . . . "This is a specialist botanical variant of the Biological Taxonomy Vocabulary."^^ . . "genome" . "Gerhard Mayer" . . . . . . . "lrg" . "http://www.ontology-of-units-of-measure.org/resource/om-2/"^^ . . "http://id.loc.gov/ontologies/bibframe/"^^ . . "genome" . "GenProp0699"^^ . . . . "hovergen" . . . . . "false"^^ . . . "mosaic" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Operation"^^ . "Metabolic Network Exchange Database" . . . . . . "Rita-Heuser"^^ . "Minimal Anatomical Terminology" . . . "The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations."^^ . "mfomd" . . . . "GCA_000155495.1"^^ . . "medicine" . . . . . . . "BowenRatio"^^ . "https://icd.who.int/browse10/2019/en#/$1"^^ . "Platynereis stage ontology" . . "https://vocabularies.cessda.eu/vocabulary/TypeOfTranslationMethod?lang=en#code_"^^ . "Tim Robertson" . . "DescriptionLevel"^^ . "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms."^^ . . "piroplasma" . . "false"^^ . . . . "taxonomic classification" . "iNaturalist User" . . . . "UMLS" . . . "scpd" . "preprints" . . "ontology" . "false"^^ . "false"^^ . . . "Anton I Petrov" . . . . "rdf" . . "anatomy" . "false"^^ . "frbrer" . "http://purl.org/NET/biol/ns#$1"^^ . "https://www.emouseatlas.org/emap/ema/DAOAnatomyJSP/anatomy.html?stage=TS"^^ . . . . . . . "Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research."^^ . . "spike00001"^^ . . . . "evgeny.zdobnov@unige.ch" . . . . "representation space direction" . "ahamosh@jhmi.edu" . . . "molecular interaction" . "http://purl.obolibrary.org/obo/VariO_$1"^^ . . "Asset Description Metadata Schema Vocabulary" . . . "http://purl.obolibrary.org/obo/OGG_"^^ . . "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$1"^^ . . . . "https://www.uniprot.org/diseases/"^^ . . . . . "model"^^ . . "educational science" . . . . . "https://www.surechembl.org/chemical/"^^ . "false"^^ . "LOC_Os02g13300"^^ . . "Interview"^^ . . . . "Pointer"^^ . . "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . . . "Radiation Biology Ontology" . . . . . . . . . . . . . . . . "protein" . . "registry" . "false"^^ . . . . . . . . . . "cooperl@oregonstate.edu" . "institution" . . . . . . . . "strain" . . "false"^^ . . . . . "International Standard Classification of Education, 2011 Edition" . "http://cor.esipfed.org/ont/earthcube/srt_$1"^^ . . . . . . . . "obo" . . . . "^\\d+$"^^ . . "drugbank.reaction" . "0000319"^^ . "protein" . . . "Neural ElectroMagnetic Ontology" . . . . . . "semantic resource" . "ndf-rt" . "The NFDI4Culture portal offers all content as Linked Open Data over this RESTful API. The API implements the Hydra-Specification of the W3C Hydra Community Group. The semantic description of this API can be retrieved by clients via the Hydra documentation file (JSON). Each metadata record offered via this API can also be retrieved in one of following machine-readable LOD serializations. The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage)."^^ . . "ontology" . . "The conference-ontology is a new self-contained ontology for modelleing knowledge about conferences. The conference-ontology adopts best ontology design practices (e.g., Ontology Design Patterns, ontology reuse and interlinking) and guarantees interoperability with SWC ontology and all other pertinent vocabularies. (from homepage)"^^ . "classification-model"^^ . "The German classification of occupations was last revised in 2020. In large parts compatible with the International Standard Classification of Occupations (ISCO)."^^ . . "^\\d{7}$"^^ . . "PeptideAtlas Dataset" . "SWEET Ontology Phenomena Planetary Climate" . . . "CB82546919"^^ . "Identifiers for the binding targets of synthetic binding proteins (SBP), describing the specific molecules or complexes that SBPs interact with for their intended applications"^^ . . "Ath_AT1G01030.1"^^ . . "taxonomy" . . "gene" . . . "Federica Quaglia" . . "false"^^ . "Global Biodiversity Information Facility" . . "digital humanities" . . "iso.3166-2" . . "https://data.who.int/countries/"^^ . "^\\d{7}$"^^ . . "Silvio Peroni" . "envipath" . . "http://purl.obolibrary.org/obo/ECAO_$1"^^ . . . . _:N0e1a25a65af54d838bf53d5e565737f7 . . . . "^\\d{7}$"^^ . . . "^(c|p)\\d+$"^^ . . . "3ae4ddfc175d768af5526a010bfe95aa"^^ . . . "A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies)."^^ . "false"^^ . . "false"^^ . . "disease genetics" . . "http://multicellds.org/MultiCellDB/"^^ . "ncim" . . "UCR00226"^^ . . "2d-page" . "The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners."^^ . _:Ne73a7501b62b4c85bb34ee7ebcd105d4 . "ontology" . . . . "co_356" . "Tabea Tietz" . "Algorithm Metadata Vocabulary" . . . "Margaret R. Woodhouse" . "true"^^ . . "https://purls.helmholtz-metadaten.de/prima/"^^ . . . . . . . . . . "subject agnostic" . . _:N989a5439c9f74bc7b33ac3b4e9e75ea5 . "Muhammad Arsalan" . "0000204"^^ . . "https://hdl.handle.net/hdl:20.500.12582/$1"^^ . . . . "atfdb.family" . . "software" . "false"^^ . "health/disease" . . . . . "pathway" . . "interaction/pathway" . . . . "SWEET Ontology Representation Space Geometry" . . "https://humap3.proteincomplexes.org/displayComplexes?complex_key=$1"^^ . . "BitterDB Receptor" . "anatomy" . "CTD Gene" . . . "http://sweetontology.net/phenEnvirImpact/$1"^^ . . "https://www.mavedb.org/#/experiments/urn:mavedb:$1"^^ . . . "AdaptiveCapacity"^^ . "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an="^^ . "bibliometrics" . "sasutton@uw.edu" . . . . . "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML)."^^ . . . "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId="^^ . . . . . . "post-transcriptional regulation" . "https://www.scopus.com/sourceid/"^^ . . "strain" . . . . "SAREF extension for building devices" . "ChEMBL" . . . "github.issue" . . . . "n4e" . "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees."^^ . . . . "nfdi4chem" . "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]"^^ . "botany" . . . . "disease" . "gramene.gene" . "http://purl.obolibrary.org/obo/CARO_"^^ . "SWEET Ontology Phenomena Energy" . . "term"^^ . "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid="^^ . "go.chemicals" . . "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites."^^ . "subject agnostic" . . . "mmp.cat" . . . "The Extensible Observation Ontology (OBOE) is a formal ontology for capturing the semantics of scientific observation and measurement. The ontology supports researchers to add detailed semantic annotations to scientific data, thereby clarifying the inherent meaning of scientific observations."^^ . "Addgene Plasmid Repository" . "diagnosis" . . . . "lewis.geer@nih.gov" . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Landform"^^ . . . "https://purl.dataone.org/odo/SALMON_$1"^^ . . "repository" . "Lebanon Clinical Trials Registry" . "A hierarchical classifications of subjects in mathematics"^^ . "gene mapping" . _:Ne7c43a19806d44c58502b71cb6887b8d "radlex-feedback@lists.rsna.org" . "sorepmo" . . "anatomy" . "https://pb.apf.edu.au/phenbank/strain.html?id="^^ . "FuTRES Ontology of Vertebrate Traits" . . . . "DNASU Plasmid Repository vector" . "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica."^^ . . . . "JRC Data Catalogue" . . . . . . . . "chemistry" . . "https://aftol.umn.edu/glossary?category=$1"^^ . "http://purl.obolibrary.org/obo/RoleO_$1"^^ . "^\\d{7}$"^^ . "https://civicdb.org/links/variant_group/$1"^^ . . . "true"^^ . . . . . "^\\d+$"^^ . . . "Bitbucket is a Git-based source code repository hosting service owned by Atlassian."^^ . "false"^^ . . . . . . . "http://cutdb.burnham.org/relation/show/$1"^^ . . . . "false"^^ . . . "^E(S|D)i\\d+-\\w$"^^ . "http://igsn.org/"^^ . "egon.willighagen@gmail.com" . . . . "PharmacoDB Cells" . . "http://standards.iso.org/iso/15926/part14/$1"^^ . "ecology" . . . "jcottrell@matrixscience.com" . . "http://opendata.inra.fr/ATOL/ATOL_"^^ . "false"^^ . "SWEET Ontology State Time Frequency" . "neurobiology" . . "false"^^ . "physiology" . . . . . . . . "^IID\\d+$"^^ . . "Ulrike Wittig" . . . . . "https://www.re3data.org/repository/"^^ . . . . . . . . . "Aisling Doyle" . "metagenomics" . . "^CHEMBL\\d+$"^^ . . . . . . . . . . . "gene" . "Library of Congress Format Description Document" . . . . . . . "Cell line collections (Providers)"^^ . . "fair data spaces" . "https://www.storedb.org/store_v3/download.jsp?fileId="^^ . . . "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=$1&pv_status=VERIFIED&pv_vis_code=L"^^ . . "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components."^^ . . . . . . "SRX000007"^^ . "false"^^ . "tigrfam" . "KGR1"^^ . . "This resource is about studies in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]"^^ . . . . "john.garavelli@ebi.ac.uk" . . "s4syst" . "physh" . "data analysis" . . . . . . . "method" . . . . "The Prescription of Drugs Ontology" . "co_360" . . . . "http://purl.obolibrary.org/obo/SYMP_$1"^^ . . "http://data.europa.eu/bkc/notation_$1"^^ . . "0187632"^^ . . . "protein" . . "http://standards.iso.org/iso/15926/part14/"^^ . . "https://spdx.org/rdf/3/terms/"^^ . . . "ccdc" . "organism" . "cellimage" . . . . . . . . . "funcbase.human" . "ECMDB" . . . . "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets."^^ . . . . "Properties of the Raras rare disease knowledge graph"^^ . . "http://ontology.tib.eu/gesah/$1"^^ . . . . . _:N478a5b2116284c7b8e7521eda4f9170e "Alain J. Cozzone" . . "robert.j.allaway@gmail.com" . "https://biosimulators.org/simulators/$1"^^ . . . . "engineering" . "CAA71118.1"^^ . "researcher" . "0000019"^^ . "gene" . "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records."^^ . "A repository of software packages written in PHP."^^ . . . "cultural heritage" . . . . "ovarian" . . . "false"^^ . . . "judith.blake@jax.org" . "Medical Dictionary for Regulatory Activities" . . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent."^^ . "mpjensen@buffalo.edu" . . "dendrology" . . "gene" . . . . "617102"^^ . . "Selventa Complexes" . . "ampere"^^ . . . . "^\\d{7}$"^^ . . . . "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank."^^ . . . "gabi" . "https://www.arraymap.org/pgx:$1"^^ . "representation scientific law" . . . "false"^^ . . "phenotype" . . . "ontology" . . "biodiversity" . "DateTime"^^ . . . . . . . "false"^^ . . "A10BA02"^^ . "rwinslow@jhu.edu" . . "false"^^ . . . . "chemistry" . . "transcriptomics" . . . . . . _:Na47049d812274566b3a8eab45e41c6a4 . . "https://gnss-metadata.eu/MOID/$1"^^ . . "^Os\\S+t\\d{7}-\\d{2}$"^^ . "Minimal Viable Identifier" . . . "AcceptabilityProperty"^^ . "false"^^ . "http://www.gramene.org/db/genes/search_gene?acc="^^ . "^GN_[A-Za-z0-9_:]+$"^^ . . . . . . "ontology" . . "false"^^ . . . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene."^^ . . . "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."^^ . . . . . "sekundarstufe_2"^^ . "An ontology designed to support the semantic annotation of epidemiology resources"^^ . . . . "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1"^^ . "Physiologically-Based Pharmacokinetic Ontology" . . "Base Ontology" . "fidbaudigital.subject" . "3G6A5W338E"^^ . . "genome/gene" . . . "millipore" . "gdo" . . . . "false"^^ . . "http://open-services.net/ns/core#"^^ . "rna" . . . . "https://w3id.org/digitalconstruction/0.5/Lifecycle#"^^ . . . "^\\d+$"^^ . . . . . "Integrated Taxonomic Information System" . "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease"^^ . . . "10595"^^ . . . . "miRBase Families" . . "https://portal.hubmapconsortium.org/browse/sample/"^^ . . . "did" . . . . "upper-level ontology" . "090701"^^ . "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data."^^ . . "metascience" . "One of the 23 stages of embryo development"^^ . . . "Swiss National Clinical Trials Portal" . "https://purl.dataone.org/odo/ADCAD_"^^ . . . . "nfdi4ing" . "A UUID for a community indexed in the Data Liteacy Alliance (DALIA) web application"^^ . "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1"^^ . "clinicaltrial" . . . . "A hybrid chemical enyclopedia and supplier advertizing system for chemicals."^^ . "false"^^ . . . . "^FOOD\\d+$"^^ . "ontology" . . "^[A-Za-z_0-9]+$"^^ . . . "https://www.ebi.ac.uk/chembl/compound/inspect/$1"^^ . "plant cell biology" . . "https://istransbase.scbdd.com/database/trans/"^^ . "Cell line databases/resources"^^ . . . "false"^^ . "genetic variation" . . "ODAM (Open Data for Access and Mining) is an Experimental data table management software (EDTMS) to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines.\n\nODAM allows datasets to be explored and then extracted in whole or in part as needed.\n\nFor more information/explanation, see ODAM User's Guide : https://inrae.github.io/ODAM/"^^ . "ktym@dbcls.jp" . . . "^(hsa|mmu|rno|cel|dme|dre)_ribocirc[A-Za-z0-9.:]+_\\d{3}$"^^ . "A vocabulary for embedding provenance metadata into webpages via RDFa"^^ . . . "TotalUniverseCompleteEnumeration"^^ . "http://modelseed.org/biochem/compounds/"^^ . . . "false"^^ . "osmo" . "^RID\\d+$"^^ . "cell line" . "https://archive.gramene.org/db/ontology/search?id=GR_tax:"^^ . "This ontology extends the SAREF ontology for the water domain. This work has been developed in the context of the STF 566, which was established with the goal to create three SAREF extensions, one of them for the water domain."^^ . "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . . "gfbio.biobank" . . . "^[A-Za-z0-9]+$"^^ . . . "https://w3id.org/evorao/"^^ . . "catalogs" . "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id="^^ . "topalis@imbb.forth.gr" . . "0000041"^^ . . . "false"^^ . . . . . . _:N504c748bdcd34106a61bce4e8359b1fa "Jerven Bolleman" . . . . . . . . "sequence" . . . "civic.disease" . "false"^^ . . . . . . . "cutg" . . . . "Defunct vaccine information source from the He Lab"^^ . "NIF Standard Ontology: Neurolex" . . . . "https://ontome.net/namespace/"^^ . . . . . . "https://www.addexbio.com/productdetail?pid="^^ . . . "https://cropontology.org/rdf/CO_367:$1"^^ . . . . . "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."^^ . "obstetrics" . "^\\d+$"^^ . "human nucleolar rna" . . . . "nfdi4ing" . "has URI prefix" . . "https://vocabularies.cessda.eu/vocabulary/TypeOfTranslationMethod?lang=en#code_$1"^^ . "coypu" . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast."^^ . . . . "http://purl.obolibrary.org/obo/OBCS_"^^ . . . . "miscellaneous" . . . . "BallLightning"^^ . . . . . "chemical compound" . . . "ontology" . "mechanical engineering, energy technology" . . . "microbiome" . "biocatalogue.service" . . . "https://jrct.niph.go.jp/en-latest-detail/$1"^^ . _:N87ae647580904a3ba6091fefce9e4bf1 "NIH Reporter Helpdesk" . "http://sweetontology.net/humanDecision/$1"^^ . . . . "genefarm" . "false"^^ . "phenotype" . "false"^^ . . . "health/disease" . . . . . "phenomena" . . "LifeWatch Metadata Catalogue" . . "000320401"^^ . . "The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches)."^^ . . . . . "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information."^^ . . "UniProt Diseases" . . _:N5f836ee4be9d44fe96224f149bbb5862 "Patrick Le Bœuf" . . . . . "Niclas Karlsson" . . . . "sty" . . "computer science" . "http://sweetontology.net/phenCycle/"^^ . "fair data spaces" . "nfdi4chem" . "ATCC" . "31"^^ . "streptomedb" . "Terms from the source appear in the target resource" . "World Health Organization Verbal Autopsy Code" . . . "http://www.probonto.org/ontology#PROB_"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Format"^^ . . "iedb.reference" . "protein" . . "icdo" . "sweet.reag" . . "ontology" . . "fluid transport" . . . . "expression" . "Platform Material Digital Core Ontology" . "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue="^^ . . . . "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1"^^ . . "https://www.ncbi.nlm.nih.gov/bioproject/?term="^^ . "false"^^ . "ontology" . "false"^^ . . . . "sisu" . "sequence" . . "Library of Congress Subject Headings" . "Porifera Ontology" . "false"^^ . "molsim" . . . "http://terminology.lido-schema.org/repositorySet_type/"^^ . . . . "http://www.pharmgkb.org/gene/$1"^^ . . "An organization in the CORDIS database"^^ . . . . . . "fid baudigital" . . . . . "annotation" . . "mmrrc" . . "ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for compounds that compete with probes for binding to target proteins."^^ . "http://purl.obolibrary.org/obo/LPT_"^^ . . . "obo" . "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac="^^ . . "pathoplant" . "MolMeDB" . "https://civicdb.org/links/molecular_profile/$1"^^ . . . "^[A-Za-z]+$"^^ . . . . . . . "ppr" . . . "A reusable element of a vector graphic for an anatomical entity useful for biological and biomedical informatics applications."^^ . "MultiCellDS" . "Dialnet journal ID" . "phenotype" . "DevTox" . . "http://sweetontology.net/propEnergyFlux/"^^ . . "Educational Sectors Vocabulary" . . . "Shur-Jen Wang" . . . . "elements" . "chemical compound" . "rna" . "Subset of OeAI Thesaurus focusing on cultural time periods"^^ . "anatomy" . "ID in osf.io"^^ . . "false"^^ . "The SEED" . . . "https://www.ncbi.nlm.nih.gov/nucest/"^^ . "numerical identifier for a person in the International Plant Names Index"^^ . "philippe.rocca-serra@oerc.ox.ac.uk" . . . . "health/disease" . . . . "mathematics" . "http://purl.org/pav/$1"^^ . . . "obo" . "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes."^^ . "false"^^ . "false"^^ . "CUT"^^ . "https://bioregistry.io/cadsr:"^^ . . . . . . . "ChemBioSys Strain" . "biomedical science" . . . . "sequence" . . "https://fda.report/applications/"^^ . . . . "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1"^^ . "false"^^ . . . . . "DataCite Related Identifier Type" . "classification" . "^\\d{7}$"^^ . . "organism" . . "uniref" . . "Research and learning in agriculture, the environment and the applied life sciences"^^ . . "11303"^^ . . "SWEET Ontology Realm Land Aeolian" . . . . . . "protein" . "https://www.scopus.com/affil/profile.uri?afid=$1"^^ . . "Fluorophores.org substance ID" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Rotation"^^ . . "^[a-z0-9]{10}$"^^ . . . . . "https://www.ebi.ac.uk/metagenomics/genomes/"^^ . "orpha" . . . . "ontology" . . . . . "false"^^ . . . "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . . . . "idomal" . . . . . "Human developmental anatomy, abstract version" . . . . . "fisheries science" . . . "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1"^^ . . "false"^^ . . . . . "flu" . "http://sweetontology.net/phenGeolTectonic/"^^ . . "Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease."^^ . "Glenn King" . "biomedical science" . . "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . "family and domain databases" . . "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/"^^ . . . . "chemical" . . "food" . "Genomics of Drug Sensitivity in Cancer" . . _:N641537beab594d41b95f8e06003a6f80 "NLM Customer Service" . . . "ontology" . . . . . "http://sweetontology.net/rela/$1"^^ . "Open Tree of Life" . "false"^^ . "structure" . "nfdi4ing" . "py.vandenbussche@gmail.com" . . . . . . . . . . . . "false"^^ . "UMLS_ICD9CM_2005_AUI" . "saref.building" . "materials science" . "chemical structure" . "ontology" . . . "ontology" . . "tumor" . . "tgbugs@gmail.com" . "false"^^ . . "genome" . "nfdi4cat" . "002678"^^ . . . . "geometry" . . . "ontology" . . "ccds" . . . . . "A controlled vocabulary to support the study of transcription in the developing human brain"^^ . . . "https://w3id.org/seo#"^^ . "MedGen Concept Unique ID" . "molgluedb" . "molbase" . . . "https://www.uniprot.org/uniref/"^^ . "SPARC DRS" . . . "data_1664"^^ . "false"^^ . . "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences."^^ . . "group_27"^^ . . "SWEET Ontology Material Isotope" . "radiology" . "http://purl.obolibrary.org/obo/GECKO_"^^ . . "10153"^^ . . "sweet.repmg" . . . . "medicine" . "life science" . . . . . "Ensembl Metazoa" . . . "0000081"^^ . "http://sweetontology.net/propCharge/"^^ . . . . . . "^\\d{7}$"^^ . "http://www.pharmgkb.org/disease/$1"^^ . . . . . . . "biologics" . . "pathogen" . . . "plant phenotypes and traits" . . . . . . . . . . . . . "P12345"^^ . "^\\d{7}$"^^ . . "Jianfeng Pei" . "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa"^^ . . . "cdna/est" . . . . "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1"^^ . . . . . "mcc" . "https://pharmacodb.ca/cell_lines/$1"^^ . . . . . "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide"^^ . . "^\\d{6}$"^^ . "PSI-MOD" . "hsa-mir-200a"^^ . "Array"^^ . . . "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid="^^ . "life science" . "ydpm" . "https://cropontology.org/rdf/CO_366:$1"^^ . "Basic Register of Thesauri, Ontologies & Classifications" . . . . . . "^ITMCTR\\d+$"^^ . . . . "RiceNetDB miRNA" . . . . . "lido" . "http://uri.neuinfo.org/nif/nifstd/"^^ . . . "T3D0001"^^ . "ribonucleic acid" . "^\\d{2,7}-\\d{2}-\\d|DTXSID\\d{7,9}|[A-Z]{14}-[A-Z]{8}[SN][A-Z]-[A-Z]$"^^ . . . . . "true"^^ . . . "computer science" . . . "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis."^^ . . "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1"^^ . . "false"^^ . . . "rdf" . "Cell Line Ontology [derivative]" . . . "^\\d+$"^^ . . . "education level" . "Wikidata Entity" . "http://purl.org/spar/mito/"^^ . . . . "DirectiveInformationContentEntity"^^ . . "RAiD is an identifier and global system, governed by ISO 23527:2022, to uniquely identifiy research projects, collaboratively, collect and publicly share information about them."^^ . . "http://purl.obolibrary.org/obo/AISM_$1"^^ . . . . "^\\d+$"^^ . "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$"^^ . . . "https://w3id.org/GHGA/"^^ . "https://assets.nemoarchive.org/"^^ . . . "nfdi4cat" . "Time Ontology in OWL" . "^GLDS-\\d+$"^^ . . "developmental biology" . . . . "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record."^^ . "http://www.isni.org/isni/"^^ . . . . . . . "0000010"^^ . "liujianghua@usc.edu.cn" . "ontology" . . "Vertebrate Breed Ontology" . . . . . . "GLDS-141"^^ . "evolutionary biology" . . . "economics" . "EndlessForms Studio Library" . "Jian Huang" . . . . . "repository" . . . "morbidity" . . . . "reproduceme" . "MEROPS Entry" . "SWEET Ontology Phenomena System" . . "life sciences, biology" . . . . "lgic" . "SNOMEDCT_US_2019_03_01" . "Leadscope ID" . "infection process" . "^\\d+$"^^ . . "true"^^ . "Cell Cycle Ontology" . . "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact."^^ . "sopropdifu" . . "ess" . . "3d structure" . . "gene expression" . . "^\\d{7}$"^^ . . . . "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]"^^ . "exposedBy"^^ . . . . "http://sweetontology.net/procStateChange/$1"^^ . . . "publishing" . . . "Specifies the event happening over the data life cycle that is considered significant enough to document."^^ . "3"^^ . "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature."^^ . "IHO World Seas" . "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#"^^ . "http://purl.obolibrary.org/obo/PHIPO_"^^ . . . . "SWEET Ontology Human Environmental Assessment" . "social sciences" . "pombase" . . . . . . . "obo" . "sohues" . . "Fernanda Dorea" . "controlled term" . "identifier for a plant taxon, in the Government of Western Australia's FloraBase database"^^ . "https://w3id.org/information-resource-registry/"^^ . . . "Gemina Symptom Ontology" . . "mutant strain" . . "^[A-Za-z0-9]+$"^^ . . . "chembiosys.data" . "ontology" . "Bohlmann Ontology" . . . "http://purl.org/dcx/lrmi-vocabs/educationalUse/$1"^^ . "false"^^ . . . . "biology" . "FBgn0000015"^^ . . . "false"^^ . "Lexicon Model for Ontologies" . . "^8\\d{4}$"^^ . . . . . "si.units" . "artificial intelligence" . . . "dcat_ap" . _:N5eae87da254e42a598e3a2e47c98e489 . "http://rdf.geospecies.org/ont/geospecies#$1"^^ . . "false"^^ . . . . . "Comparative Data Analysis Ontology" . . . . . . . "http://uri.gbv.de/terminology/datacite-relatedidentifiertype/"^^ . . . . . . . . "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"^^ . . "chemical biology" . "genome/gene" . "http://purl.bioontology.org/ontology/CSP/"^^ . . "organism-specific databases" . . "The CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet. These terms are intended primarily to be associated with datasets that quantify concentration of chemical nutritional components derived from samples taken from any stage in the production of food raw materials (including from crops, livestock, fisheries) and through processing and supply chains. Additional knowledge associated with these dietary sources may be represented by terms that describe functional, physical and other attributes. Whilst recognising that dietary nutrients within food substrates may be present as complex and dynamic physical and chemical structures or mixtures, CDNO focuses on components typically quantified in an analytical chemistry laboratory. The primary CDNO class ‘dietary nutritional component’ contains hierarchical sets of terms organised to reflect commonly used classifications of chemical food composition. This class does not represent an exhaustive classification of chemical components, but focuses on structuring terms according to widely accepted categories. This class is independent of, but may be used in conjunction with, classes that describe ‘analytical methods’ for quantification, ‘physical properties’ or ‘dietary function’. Quantification data may be used and reported in research literature, to inform food composition tables and labelling, or for supply chain quality assurance and control. More specifically, terms within the ‘nutritional component concentration’ class may be used to represent quantification of components described in the ‘dietary nutritional component’ class. Concentration data are intended to be described in conjunction with post-composed metadata concepts, such as represented by the Food Ontology (FoodOn) ‘Food product by organism’, which derives from some food or anatomical entity and a NCBI organismal classification ontology (NCBITaxon) entity. The common vocabulary and relationships defined within CDNO should facilitate description, communication and exchange of material entity-derived nutritional composition datasets typically generated by analytical laboratories. The organisation of the vocabulary is structured to reflect common categories variously used by those involved in crop, livestock or other organismal production, associated R&D and breeding, as well as the food processing and supply sector, and nutritionists, inlcuding compilers and users of food composition databases. The CDNO therefore supports characterisation of genetic diversity and management of biodiversity collections, as well as sharing of knowledge relating to dietary composition between a wider set of researchers, breeders, farmers, processors and other stakeholders. Further development of the functional class should also assist in understanding how interactions between organismal genetic and environmental variation contribute to human diet and health in the farm to fork continuum."^^ . "^\\d+$"^^ . . "agriculture" . "dna" . . . . "https://sed-ml.org/urns.html#language:"^^ . . "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB."^^ . . "false"^^ . "21393"^^ . . "structure" . . "nfdi4ing" . . . . . . "MultiCellDS Digital Cell Line" . . . "Ruth Duerr" . "false"^^ . "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."^^ . "0000066"^^ . . . . "false"^^ . . . . "protein" . "catalogs" . . . . . . "competence" . "https://bioregistry.io/imgt.primerdb:"^^ . . . . . . "A vocabulary describing subjects taught in German primary and secondary school (not university/hochschulen), such as German, math, and art."^^ . "^FCB\\d{3}$"^^ . . . . . . "https://registry.identifiers.org/registry?query=MIR:$1"^^ . "221058"^^ . "http://purl.obolibrary.org/obo/TAO_$1"^^ . . . "false"^^ . "https://www.npatlas.org/explore/compounds/"^^ . "Nicolas Terrapon" . "Healthcare metadata - DICOM ontology" . . . . "vbase2" . . "taxonomy" . . "https://terminology.tib.eu/ts/ontologies/"^^ . . . "NP_003997.1:p.Trp24Cys"^^ . . . . . . . . . . . "true"^^ . . "http://rs.tdwg.org/dwc/terms/$1"^^ . . . "Cell line databases/resources"^^ . "nihreporter.project" . . . . . "CVCL" . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records."^^ . . "88"^^ . "HIP000030660"^^ . . "NEPOMUK Annotation Ontology Specification" . . . "Christopher M. Overall" . "GoodRelations" . "false"^^ . "The Ecosystem Ontology" . "^\\d{7}$"^^ . . "false"^^ . . . "http://www.innatedb.ca/getGeneCard.do?id="^^ . "life cycle" . "RAP-DB Transcript" . . . . "http://rna.rega.kuleuven.be/rnamods/rnashow.pl?"^^ . . "health/disease" . . . . . "joerg.overmann@dsmz.de" . . . . . . "rna" . . "4"^^ . . "structure" . "mutation" . _:N53b2f4fde30045d19b306d28dc19c6af "lars.juhl.jensen@cpr.ku.dk" . . . . . . . "Edison Ong" . "^\\d+$"^^ . "fair data spaces" . . . "person" . . . . . . "biologic biome" . "R-BTA-418592"^^ . "genetic variation" . "alan.rubin@wehi.edu.au" . . . . "Linked Open Vocabularies" . . . "edm.fibo" . . . . . "100101"^^ . "277.9"^^ . . "ontology" . . "https://biokb.lcsb.uni.lu/fact/$1"^^ . . . . "daniel.c.berrios@nasa.gov" . "Health Data Research Innovation Gateway" . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene."^^ . "CY077097"^^ . "https://go.drugbank.com/drugs/"^^ . . "Ronald C. Beavis (Ron Beavis)" . "false"^^ . . . "alexander.behr@tu-dortmund.de" . . . . . "physics" . . "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models."^^ . . "0001350"^^ . . . "bibliography/documents" . . . "International Classification of Diseases for Oncology" . . "Contains entries for various database identifiers" . "^(0|1-2|3-4|5|7-8|[0-9]{2}(\\.[0-9]{2})?)$"^^ . . . . . . . . . "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier."^^ . "false"^^ . . "https://vocabularies.cessda.eu/vocabulary/KategorienschemaWahlstudien?lang=en#code_$1"^^ . "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#"^^ . . . . "data analysis service" . . . . "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1"^^ . . . . . . . "http://purl.obolibrary.org/obo/CDNO_"^^ . "^\\d+$"^^ . . "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$"^^ . . . "structure" . . . . "nfdi4ing" . "ontology" . "life science" . "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML)."^^ . "anatomy" . . . "genetics" . . "GenBank" . . "disorders" . "Identifiers for space-related data from experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . "Livestock Product Trait Ontology" . . . . "false"^^ . "James McLaughlin" . . "https://www.eionet.europa.eu/gemet/en/relations/"^^ . . . . "MediaDive Solution" . . "oslc" . . . "A0014"^^ . . . . . . "CRISPRdb" . "MIMAT0046872"^^ . . . "Transport Systems Tracker" . "AccessModifier"^^ . . "^\\d+$"^^ . _:N5ecae7ebf543492ca6fbc6f577ae5ece . "http://metnetonline.org/browse_pathway2.php?pthID="^^ . . "true"^^ . "^[1-9]\\d*$"^^ . . . "PRO" . "Raymond Lee" . "Higher Education Resource Types" . . . . "https://civicdb.org/links/evidence/"^^ . . . "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways."^^ . _:Nc7d4fd2db7f24abaaa6cd18e84f84810 "d.fichtmueller@bgbm.org" . . "pangenome" . "ortholog" . . "soreaofe" . . . . "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules."^^ . . . "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens."^^ . . . . . . "SWEET Ontology Phenomena Geologic Seismicity" . "false"^^ . "sequence" . . "dbmhc" . . . "biomodels.vocabulary" . . "Semantic Web Context" . "[PID4NFDI](https://pid.services.base4nfdi.de) is a Base4NFDI service that provides documentation about a small number of well-known identifier schemes (e.g., DOI) and services for registering identifiers within them (e.g., DataCite). This collection reflects their [PID Providers](https://pid.services.base4nfdi.de/get-pid/providers/) page. This comes with the following caveats:\n\n- Crossref and DataCite are services that mint DOIs. Since DOIs are the identifier space, only `doi` appears in this collection.\n- ePIC is a service that mints Handle system. Since Handles are the identifier space, only `hdl` appears in this collection\n- PIDINST is an abstraction on top of DataCite / ePIC, which is covered by `doi` and `hdl` as described above" . . "protein" . "https://bioregistry.io/genpept:"^^ . . "https://www.nfdi.de/wp-content/uploads/2021/12/MaRDI_Logo_rgba.png"^^ . . . . "development" . . . . "Software Package Data Exchange RDF Vocabulary" . . . "researcher" . "biospecimen" . "bibliography/documents" . . . . . . . "arachnoserver" . "ontology" . . . . . "metatlas" . "Robert Allaway" . . . . . . "false"^^ . "vso" . . . "agriculture" . "false"^^ . "bio.tools" . . "wormpep" . . "false"^^ . "bmrb.restraint" . . . . "osti.article" . . "sbalu@ebi.ac.uk" . . "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#$1"^^ . . . "false"^^ . "ontology" . "genome/gene" . . . . "obo" . . "NIF Dysfunction" . "false"^^ . . . "protein" . . . . . . "regulation of gene expression" . "Enzyme Nomenclature" . . . . "An ontology encoding the Common Information Model (CIM) schema"^^ . "Mouse Brain Atlas" . "false"^^ . . "identifier for a physical constant"^^ . . . . . "go.rule" . . . "false"^^ . . . . "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1"^^ . "NIST" . "http://www.kegg.jp/entry/$1"^^ . "peff" . "false"^^ . . "true"^^ . . . . "^\\d{7}$"^^ . . . "^EBI\\-[0-9]+$"^^ . "Component"^^ . . . . "tgv139393198"^^ . . . . "https://aopwiki.org/events/$1"^^ . . "bead62a8-c3c2-46d6-9eb1-ffeaba38d5bf"^^ . "ADM1"^^ . . . . . . "rna" . . . . "Cell Version Control Repository" . . . . . . . . . . . "classification" . . "Edgar Wingender" . "sohueccont" . "The Chromosome Ontology is an automatically derived ontology of chromosomes and chromosome parts."^^ . . . "genetic" . . . . . . "monitoring" . . "false"^^ . . . . . . "https://pharmacodb.ca/cell_lines/"^^ . . "anatomy" . "ghr" . . "Includes a typology of notes."^^ . . . . "rdo" . . "Laboratory of Systems Pharmacology Compound" . . . . . "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence."^^ . . "phenotype" . . . "0000339"^^ . . . "false"^^ . "DSSTox_CID" . . . "https://w3id.org/fair/principles/terms/"^^ . "https://prefix.zazuko.com/" . . "A molecular entity that condenses, e.g., in a disease, such as ATG condensate"^^ . . "earth sciences" . "sequence" . "paleodb" . "semantic web" . "PLOSTHES" . . . "health/disease" . "nfdi4chem" . . . . "isacorreia@tecnico.ulisboa.pt" . . "Petra Fey" . . . "chemical entity" . . "3d structure" . . "obo" . . . "interaction" . . "s4auto" . . . . . . "antimicrobial peptides" . . . "false"^^ . "true"^^ . "SAMEA10104908"^^ . . "r@iannel.la" . . "https://bioregistry.io/chictr:"^^ . . "1"^^ . . "https://web.expasy.org/cellosaurus/cellopub/$1"^^ . . . "^[a-zA-Z0-9 +#'*]+$"^^ . "GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group."^^ . "https://w3id.org/i40/sto#"^^ . "methylation" . . . . "phenotype" . . "https://rubygems.org/gems/"^^ . . . "ensembl.metazoa" . "social science" . "https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/$1"^^ . . . . "suprabank.additive" . "true"^^ . . . "false"^^ . . . "004126"^^ . "EC number" . . . "Library of Congress Control Number" . . . "ontology" . "SWEET Ontology State System" . "Ligand Expo" . . "http://purl.obolibrary.org/obo/CLAO_"^^ . . . . "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1"^^ . . . . "UniProtKB_VAR" . "ontology" . "louis@imbb.forth.gr" . "false"^^ . . . . . . "nmpdr" . "sweet.mapa" . . . "4QHKG"^^ . . "corrdb" . . "SWEET Ontology Realm Geologic" . . . "SNOMEDCT_US_2020_03_01" . . "Identifiers correspond to hemolytic and non-hemolytic peptides for therapeutic and diagnostic research"^^ . . . . . . "findex.bau" . . . "00005643"^^ . "phenotype" . . . "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\"."^^ . . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . . . . "CIViC variant" . . . "0000003"^^ . . . "http://purl.obolibrary.org/obo/AERO_$1"^^ . "Certificate"^^ . "lam87@cornell.edu" . . . "http://sweetontology.net/propEnergy/$1"^^ . . . . . . . "62"^^ . "ontology" . . . . . . "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$"^^ . . "http://sweetontology.net/phenGeolGeomorphology/$1"^^ . "A study in the ChemBioSys data platform"^^ . . "sweet.phsyc" . . "Scopus Publication" . . . . . . . . "false"^^ . "http://biomeddb.org/Disease/Details?DISEASEID="^^ . "genome" . . . . "The Cancer Imaging Archive" . "iceo" . . . . "^PD\\d{6}$"^^ . "https://qsproteome.org/entry/"^^ . . . "This specification contains a framework for representing pointers - entities that permit identifying a portion or segment of a piece of content - making use of the Resource Description Framework (RDF). It also describes a number of specific types of pointers that permit portions of a document to be referred to in different ways. When referring to a specific part of, say, a piece of web content, it is useful to be able to have a consistent manner by which to refer to a particular segment of a web document, to have a variety of ways by which to refer to that same segment, and to make the reference robust in the face of changes to that document. This specification is part of the Evaluation And Report Language (EARL) but can be reused in other contexts too. [from homepage]"^^ . . . . . . . . "protein" . . . . "LIPID_MAPS_class" . "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1"^^ . "ActiveContinent"^^ . . . "https://resolver.api.identifiers.org/resolveMirId/$1"^^ . . . . . . . "Developmental stages of the Zebrafish"^^ . . . . "0045310"^^ . . . "^\\d+$"^^ . . . "http://sweetontology.net/relaTime/$1"^^ . . "IA"^^ . "Collection"^^ . "false"^^ . . "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes."^^ . . . "Peroxibase" . . . "SWEET Ontology Material Rock Igneous" . "false"^^ . . "tsRNADisease" . "http://viaf.org/viaf/$1"^^ . . "Cancer cell LInes GEne fusions portAl" . . . "odm2.specimentype" . . "^\\d+$"^^ . . "https://www.scopus.com/sourceid/$1"^^ . . . . . . . . "true"^^ . . . "false"^^ . . "fair" . "diagnosis" . . "http://purl.obolibrary.org/obo/XAO_$1"^^ . "biomedical science" . . "DBCAT000600"^^ . . . "omics" . "NCI2004_11_17" . "David Linke" . "chemistry databases" . . . . "uniprot.var" . "false"^^ . . . "http://www.coloncanceratlas.org/search_cell_line?cell_line=$1"^^ . . . . "false"^^ . "^\\d{7}$"^^ . "protein" . "false"^^ . . "https://nfdi4culture.de/id/$1"^^ . "https://togoid.dbcls.jp/" . . . . . "realm" . "gene" . . "Anatomy"^^ . "MediaDive Ingredient" . . . . "Xeni Kechagioglou" . "http://sweetontology.net/propFunction/"^^ . . "sweet.phpc" . . . . . . . . "Maryann Elizabeth Martone" . "6978836"^^ . "repository" . _:Ndb73e78062ca4a6aaacdbe1f1594987d . . . "ontology" . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . "digital planning and construction" . "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]="^^ . . "fig|224308.179.peg.198"^^ . "http://www.w3.org/ns/shex#$1"^^ . "https://hpscreg.eu/cell-line/"^^ . "false"^^ . . . . . . . "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events"^^ . . "https://molmedb.upol.cz/mol/"^^ . . "g__Prochlorococcus_A"^^ . . . . . "false"^^ . . "false"^^ . . _:Na80c9a56a05a4ac3b4f8048ca30cc2ee "Anita Ghebeles" . . . . "mechanical engineering, energy technology" . "environmental science" . "Identifier used by the Cancer Chemotherapy National Service Center."^^ . . . . . "ML0224"^^ . . . "maxat.kulmanov@kaust.edu.sa" . . . . . . "inaturalist.user" . . "dna" . "antitoxin" . . "^\\d+$"^^ . . "https://models.physiomeproject.org/exposure/$1"^^ . . "educational science" . . . "primary health care" . . "clinical diagnostics" . . "13"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Data Processing"^^ . . "Activity"^^ . . "datanator.reaction" . . "http://rs.tdwg.org/dwcem/"^^ . . . "health/disease" . . "genome" . "CODATA Research Data Management Terminology" . . . " tectonicland" . . . "Zhang Zhang" . "https://www.ebi.ac.uk/gene2phenotype/lgd/$1"^^ . . . "nfdixcs" . "^\\d{7}$"^^ . . "Describes the physical format(s) of the data documented in the logical product(s) of a study unit."^^ . . . . . "embryo" . "Aggregation Method" . . . . . . . . "The reviewer of a prefix" . "false"^^ . "Tuan Amith" . . . "Tribology Ontology for Artificial Intelligence" . . "rnaloops" . . . . "2"^^ . "false"^^ . . "false"^^ . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Microbiota"^^ . "FullySpecifiedAtom"^^ . . "Jacobo Miranda" . . "100291"^^ . "https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr=$1"^^ . "false"^^ . . . "hello@vivekkrish.com" . . . . . "ontology" . . . . "https://bioregistry.io/dragondb.allele:"^^ . "Nathan Sheffield" . "http://viroligo.okstate.edu/main.php?vid="^^ . "AverageAnnualPrecipitation"^^ . _:N699f392ca0cb4f71a5a6d586a2473e39 "edd@usefulinc.com" . . . "https://saref.etsi.org/saref4wear/$1"^^ . . . . "relations" . . "false"^^ . "ontology" . . . . . . "compound" . . . . . "obo" . . "This Occupaton Ontology (OccO) is an ontology in the domain of human occupaitons. Current OccO version is developed based on the US Bureau of Labor Statistics Standard Occupation Classification (SOC) and the related O*Net System. The OccO development follows the principles of the Open Biological and Biomedical (OBO) Foundry."^^ . . . . "plant biomass" . . . "obo" . "neuroscience" . "Tri©DB is a newly developed integrated platform functioning as a knowledge base and reporting system for cancer precision medicine. This platform harmonizes and mines cancer-related data from various aspects, presenting them on a centralized platform with enhanced accessibility, rich annotations, and robust analysis capabilities. The development of Tri©DB is aimed at meeting the needs of a broad range of researchers, thereby propelling both foundational and translational research in cancer precision medicine."^^ . "https://smid-db.org/detail/"^^ . . . . . . . . . . . . . . "Human Induced Pluripotent Stem Cells Initiative" . . "brettolivier@gmail.com" . "awalker@apa.org" . . . . . . . . . . "^\\d{7}$"^^ . . . "false"^^ . . "laia.subirats@gmail.com" . "true"^^ . . . "ontology" . . "lars.eisen@colostate.edu" . . . "fisheries science" . . . _:Nc4823c0e62ff4867993303e03e06bc6b "Kristin D. Kasschau" . . . "methods" . "model organism database" . . "http://purl.obolibrary.org/obo/VTO_$1"^^ . "tbreddy@lbl.gov" . "emdb" . "http://purl.obolibrary.org/obo/FOODON_"^^ . "00020134"^^ . "representation data format" . "gene" . "http://www.w3.org/ns/shacl-node-expr#"^^ . . "http://sweetontology.net/phenAtmoPrecipitation/$1"^^ . . "Small Molecule Pathway Database" . "A vocabuarly for describing the background and methodology for the design of the DataCite profile of DCAT-AP (CiteDCAT-AP), as well as the defined mappings."^^ . "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1"^^ . . . . "w3c rec" . . . "venom" . . . "false"^^ . . . . . . "viaf" . "https://www.nfdi.de/wp-content/uploads/2023/03/01_Logo_NFDI4Energy.png"^^ . . . "UniProt journal" . "Ontology for the Anatomy of the Insect SkeletoMuscular system" . "http://purl.obolibrary.org/obo/OBA_"^^ . "http://w3id.org/owlstar/$1"^^ . . . "00573"^^ . . "F0001"^^ . . . . "NLXCHEM" . "virus" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Representation Scientific Methodology"^^ . "mim" . "state system" . . "edam" . "sdap" . . . "https://datacommons.org/browser/$1"^^ . . "^\\d{6}(-\\d+)?$"^^ . "Sabrina Toro" . . "Guide to Pharmacology Ligand" . "enzo" . "x-ray diffraction" . "https://www.ebi.ac.uk/pdbsum/$1"^^ . "human disease" . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1"^^ . . . "plant phenotypes and traits" . "https://registry.identifiers.org/registry/$1" . . "Nikolaus Schultz" . . . . "topdb" . "ontology" . . . . "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA)."^^ . . "^tgv[0-9]+$"^^ . . "chemistry" . "w3c rec" . "Etienne Posthumus" . "http://oncotree.mskcc.org/api/tumorTypes/search/code/"^^ . . "sorepsg" . . . . "false"^^ . . . "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id="^^ . . "method" . . . "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved."^^ . "upheno" . "^[A-Za-z_]+$"^^ . . . "false"^^ . "compound" . "4884"^^ . . . "A application driven Epilepsy Ontology with official terms from the ILAE."^^ . "genatlas" . "sophatmopc" . "CIÊNCIAVITAE ID" . . "genome/gene" . . . . . "false"^^ . . . . . . . "John Kunze" . . . "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems."^^ . "adult" . . "Sol Genomics Network" . . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes."^^ . . . . . . . . . . "G02681"^^ . . . . "rna" . . . "GT10"^^ . . "10531"^^ . . "metanetx.reaction" . . "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes."^^ . . . . "true"^^ . . "protein-containing complex" . . . . . "^M\\d+$"^^ . "http://hdl.handle.net/11459/"^^ . . . . "TripleExpression"^^ . . . . . . "C138986"^^ . . "^[a-z_A-Z0-9]+(\\[[c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y]\\])?$"^^ . "scientist" . "false"^^ . . . "Imke Tammen" . "merriamwebster" . . "BioLink Model" . . "true"^^ . . "https://bioregistry.io/metaregistry/go/$1"^^ . . . . . . . "GrainGenes symbol" . "Gramene Gene" . . . . . . "AY321118"^^ . . . "false"^^ . . . "false"^^ . . . . "false"^^ . . . "Biomarker Knowledgebase - Biomarker" . . . "^mt\\d+$"^^ . . "molecular glue" . "TVAG_386080"^^ . "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1"^^ . . . "PA131"^^ . . . . "0000006"^^ . "registry" . . . . . . . "https://www.pharmvar.org/gene/$1"^^ . . . "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution and breeding company within the project. Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The Beet Ontology is one of these reference plant ontologies integrated within the Crop Ontology."^^ . . . "SWEET Ontology Process Physical" . . "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns."^^ . . . . . . "2"^^ . "false"^^ . . . . . "semantic web" . . "3771992"^^ . "dataplant" . . "cstr" . . "nfdi4ing" . . . . "http://www-snorna.biotoul.fr/plus.php?id=$1"^^ . . "https://graphics.endlessforms.info/unit?id="^^ . "44259"^^ . . . . "92"^^ . "homd.taxon" . . "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/detailed_view/"^^ . . "sequence" . . "http://purl.obolibrary.org/obo/IDOMAL_$1"^^ . . . . . . . . . "ontology" . . . "0000295"^^ . "Asteroseismology"^^ . "false"^^ . . "false"^^ . "Jens Klump" . . . "http://sweetontology.net/humanEnvirAssessment/"^^ . . . . . "false"^^ . "^\\w+$"^^ . . . . . . "uniprot.tissue" . . "disease" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Solution"^^ . . . . "rna" . . "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations."^^ . "queerNewspapers"^^ . . "false"^^ . "http://dictybase.org/gene/"^^ . . . . . . . "homologous" . "PDC000351"^^ . . "https://glytoucan.org/Structures/Glycans/$1"^^ . "Transcriptional Regulatory Element Database" . . "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data."^^ . . "proteins" . . . "Francisca Vazquez" . "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric"^^ . . "Virus-HostDB" . . . . "agriculture" . . "^PTN\\d{9}$"^^ . . "beta-carotene"^^ . "false"^^ . "http://drugcentral.org/drugcard/"^^ . "false"^^ . . . "dna" . . . "sequence annotation" . . . . "Dr. Alpha Tom Kodamullil" . "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes."^^ . "slso" . . . "http://sweetontology.net/stateStorm/"^^ . . "^\\d+$"^^ . . "MmusDv" . "false"^^ . . . . . . "false"^^ . "NAPP (Nucleic Acids Phylogenetic Profiling) is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters."^^ . . . . "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/"^^ . "0000-0003-4423-4370"^^ . . "metadata" . . . . . . . "ontology" . "transcript" . "true"^^ . . . . . . "Universal Natural Products Database" . . . . . _:N7e868958aa3e419d80d084fb4072bccf . . . . . . . . "life science" . . "false"^^ . . . "http://www.labesc.unirio.br/InfoSecSoS#"^^ . . . "mgi" . "^OSD-\\d+$"^^ . . . . "vep1@cdc.gov" . . . . . "sohur" . "rotation" . "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding."^^ . "identifier for a person, on the LinkedIn website"^^ . "geography" . . . . "^\\d+$"^^ . "github@yohannparis.com" . "System capabilities, operating ranges, and survival ranges ontology" . . . . . . "binding site" . "http://purl.obolibrary.org/obo/EMAPA_$1"^^ . "CatalogIdentifier"^^ . "^\\d+$"^^ . . _:Ncaa8beca435b4890bcea3df6078bb02b "Cameron Coffran" . . . . "1915"^^ . "computer science" . "http://sweetontology.net/phenAtmoCloud/$1"^^ . . . . "odm2.methodtype" . . . . "life science" . "^\\d+$"^^ . . . . . "acl" . . "^P(X|R|A)D\\d{6}$"^^ . "Matthias Löbe" . . . . "Reference Plant Ontologies are being developed in the context of the Planteome project and are being integrated with the Crop Ontology, which provides harmonized breeders’ trait names, measurement methods, scales and standard variables for many crops. The IBP Rice Trait Ontology is one of these reference plant ontologies integrated within the Crop Ontology. Based on SES, Rice Descriptor and IRIS DB."^^ . . . "f72958f5-7f42-4ebb-98da-445b0c6de516"^^ . "CHEBI" . . . . . . "nfdi4ing" . . "The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases."^^ . _:Nf043fceb57444f1ab4a4da3b8a4eb51b "bert.van.nuffelen@tenforce.com" . "tetrahymena thermophila" . . . . . . . "fid move" . . . . . "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."^^ . . . "araport" . . . . "https://trialsearch.who.int/Trial2.aspx?TrialID=$1"^^ . . . "AutDB" . . . . "WHO Mortality Country Code" . . "https://bioregistry.io/genecards.genenote:"^^ . "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . "expression" . "http://dictybase.org/gene/"^^ . . . "^\\d{7}$"^^ . . . "HDAA2" . . . . "^[0-9]+$"^^ . "GALEN" . "structure" . . "health/disease" . "occ" . . . . . . . . . "https://rnacentral.org/rna/$1"^^ . "atmosphere" . . "rdf" . . . . . . . "63189"^^ . . "fovt" . . . "organism supplier" . . "sweet.phwn" . . "0000069"^^ . . "^[A-Z0-9]{5}\\d+$"^^ . "https://www.uniprot.org/proteomes/"^^ . "UniGene" . . "chemical" . . . "https://doi.org/10.29172/$1"^^ . . "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_"^^ . . . . . . "http://purl.obolibrary.org/obo/MMO_"^^ . "0000003"^^ . "health/disease" . . . . . "drug" . "http://www.w3.org/2003/11/swrl#"^^ . . . "BioSimulators" . "A database for Triticeae and Avena gene symbols."^^ . . "protein" . . . . . . . "MGnify Protein" . . "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.\n\nThe original structure of the histopathology ontology was designed ab initio when the [INHAND](http://www.goreni.org/) manuscripts were not available. However, the ontology has been repetitively reviewed and updated to align with the subsequently published INHAND manuscripts. During this process cross references to INHAND lesion identifiers were added to the ontology. [from GitHub]"^^ . . . . . . . "abcam" . . _:N088ca92780694475bd46ae9459fb9321 . "tarbase" . . "https://purl.archive.org/tfsco/TFSCO_$1"^^ . . . _:N04b78c6840874f858d6b6c776e330be4 "pance.panov@ijs.si" . . "IUPHAR family" . . . . . . . . "markus.stocker@tib.eu" . "Ontology, part of the SI Reference Point, covering prefixes for the SI measurement units."^^ . "materials" . "false"^^ . . . . "PathBank" . . "https://www.echa.europa.eu/information-on-chemicals/ec-inventory/-/dislist/details/$1"^^ . "organism-specific databases" . . . . . . "The Licensed Natural Health Products Database contains information about natural health products that have been issued a product licence by Health Canada."^^ . "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data."^^ . . "Juan Jose Medina Reyes" . . . . . "http://sweetontology.net/reprSpaceDirection/"^^ . . . . . "Apollo Structured Vocabulary" . "anatomy" . . "LDPC0032"^^ . . . . "_4dn.replicate" . . . . "conferences" . "cdna/est" . . "false"^^ . . . "sopropdr" . . "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"^^ . "Alkane"^^ . . . "expression" . "attribution" . . . "ontology" . . "https://civicdb.org/links/gene/$1"^^ . . . "life cycle" . . "Unified Astronomy Thesaurus" . . "^\\w+$"^^ . "ontology" . . . "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products."^^ . "https://massbank.jp/MassBank/RecordDisplay?id=$1"^^ . . . . . "56305849200"^^ . . "esco.skill" . . "botany" . "https://biomodels.org/$1"^^ . . "proteome" . . . "http://purl.obolibrary.org/obo/LABO_"^^ . . . . "false"^^ . . . "ab-1-ha"^^ . "sostrr" . "https://corpusvitrearum.de/id/"^^ . "false"^^ . . . "psi-mi" . "infection process" . "gwascentral.study" . . . . "Material properties ontology" . "PMCID" . "ontology/terminology/nomenclature" . . "SBML RDF Vocabulary" . "https://github.com/"^^ . . "registry" . "^\\d{7}$"^^ . "https://w3id.org/emmo/domain/battery#battery_$1"^^ . "false"^^ . "nfdi4ing" . . . . . . . "obo" . "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object="^^ . . . "https://www.webofscience.com/wos/author/record/$1"^^ . . "http://dev.nemo.inf.ufes.br/seon/SEON.owl#$1"^^ . . . "MONDO Issue Tracker" . . . . . . "http://edamontology.org/format_"^^ . . . . . . . . . . . . "https://easychair.org/cfp/topic.cgi?tid=$1"^^ . . . . "^\\d+$"^^ . "strain" . . "ontology" . "http://exac.broadinstitute.org/variant/"^^ . . "https://mged.sourceforge.net/ontologies/MGEDontology.php#"^^ . "codemeta" . . "https://www.datenportal.bmbf.de/portal/de/$1.html"^^ . . . . "mgtbind.citation" . . "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1"^^ . . "genome/gene" . "false"^^ . "Valerie Wood" . "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/detailed_view/$1"^^ . "Interlinking Ontology for Biological Concepts" . . . . "http://vita.mbc.nctu.edu.tw/search.php?acc=$1"^^ . "interaction/pathway" . . "open educational resources" . . "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas."^^ . . . . "tib.re" . "^\\w{2,4}\\d{5}$"^^ . . "ontology" . . . . "doi" . . "http://www.antweb.org/specimen.do?name=$1"^^ . . . . . "protein" . . "publication" . "aceview.worm" . . _:N88d27723ccbb47859ead06de179c6ccc "Franco" . . "^\\d+$"^^ . . "small molecule" . . "sequence" . "mirtarbase" . . . "gpcrdb" . "false"^^ . . "^[1-9]\\d{0,7}-[123]$"^^ . . . . . . . . . . . . "Mosquito gross anatomy ontology" . . . . . "bioregistry.schema" . . . "engineering" . . . "genomics" . . . "nfdi4cat" . . "sostrb" . . . . . . "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"^^ . "frbr" . . "true"^^ . . . "false"^^ . "ontology" . . "ontology" . . "CNCB Genome Warehouse" . . . . . . . "ensembl.bacteria" . . "obo" . . "protein" . "dramp" . "This is the OWL implementation of CORA in IEEE 1872-2015. It only includes the taxonomy of concepts and relations, with some few axioms reggarding disjointness, property characteristics and property ranges/domains. The OWL implementation is an underspecified version of the SUO-KIF implementation in IEEE 1872-2015. That is, the set of allowed models of the SUO-KIF implementation is a proper subset of the allowed models by the OWL implementation. Concept definitions in natural language and othe clarifications can be found in the IEEE 1872-2015 standard."^^ . "gene group" . . "taxonomy" . . "materials" . "^\\d+$"^^ . . "http://purl.obolibrary.org/obo/OCCO_"^^ . . . . . "ontology" . . "bibliography/documents" . . . . . "http://www.interfil.org/details.php?id=$1"^^ . "https://molbic.idrblab.net/data/cellline/details/$1"^^ . . "ProtoNet Cluster" . "NFDI4Culture Ontology" . "Cell line collections (Providers)"^^ . "http://purl.obolibrary.org/obo/MAXO_"^^ . . "MGYS00006794"^^ . "Catastrophic"^^ . . . . . . . "systems biology" . "Tanay Shah" . "26753"^^ . "Maya Schuldiner" . . . . "http://purl.obolibrary.org/obo/RNAO_$1"^^ . . "woc.ontology" . . "A controlled vocabulary to support the study of transcription in the primate brain"^^ . "dwc.em" . . "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id="^^ . . "http://purl.obolibrary.org/obo/MFO_"^^ . . . "fid baudigital" . "method" . "vac" . "traffic engineering" . . . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012."^^ . . "false"^^ . . . "E5.11.2.0.0.0.4"^^ . . "ontology" . . . . . . . . "Anatomical Therapeutic Chemical Classification System" . . "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID="^^ . . . "http://elite.polito.it/ontologies/dogont.owl#$1"^^ . . "environmental assessment" . . . . . "false"^^ . "molecular interaction" . . "AlarmSignal"^^ . . . "false"^^ . "A collection of ontologies, controlled vocabularies, etc. indexed in the TIB Terminology Service"^^ . "^(SMP|PW)\\d+$"^^ . . "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community."^^ . "https://www.metabolome-express.org/datasetview.php?datasetid=$1"^^ . "sweet.rea" . . . "biomedical science" . . "repository" . . "LipidBank" . "The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library"^^ . . . . "^\\d{7}$"^^ . . "false"^^ . "fbbt" . . "database" . "FlyBase Reference Report" . . . "Jean-Luc Jannink" . . "CLAVAS: ISO 639-3 Language Codes" . . . "sophod" . . . "image/movie" . . "NFDI4Biodiversity Collection" . . . "dna" . . "142105"^^ . . "20"^^ . "AntennaTemperature"^^ . "^[0-9]+$"^^ . "natural science" . "http://purl.org/heritagedata/schemes/agl_et/concepts/"^^ . . "International Protein Index" . "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . "^\\d{8}$"^^ . "false"^^ . . "ontology" . . "interaction/pathway" . "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx"^^ . "The type attribute of the LIDO Resource Representation element qualifies the digital representation of a resource offered by the data provider for online presentation.\n\nIt is intended to support online services with respect to the reuse of digital resources that are referenced in the LIDO record. The controlled type vocabulary allows data providers to indicate which variant of a digital resource is described in an instance of the LIDO Resource Representation element. The vocabulary shall support common reuse scenarios such as presenting the digital resource in a search result list, in a detail view, or as downloadable media file. It may also be exploited for retrieval functions such as filtering search results by digital media types.\n\nThe top-level terms are defined to distinguish between the best available variant of a digital resource the data provider can offer for online presentation (provided_representation), the variant a data provider has selected for preview purposes (preview_representation), and the image possibly provided as replacement for the digital resource (placeholder). The definitions of the subordinate terms additionally cover the digital media type. It is highly recommended to use one of the more specific terms, provided_3D, provided_audio, provided_image, provided_text or provided_video, to qualify the media type of the best available variant (or variants in case of equivalent quality), and correspondingly, preview_3D, preview_audio, preview_image, preview_text or preview_video, to distinguish the type of the preview variant (or variants in case of equivalent quality).\n\nNote that these terms do not imply any statement about the quality or format of a digital media file. Therefore, it is recommended to describe the media file in more detail by using the respective LIDO elements and attributes defined for the LIDO Resource Set. As a general recommendation, at a minimum the media file format should be specified by the LIDO formatResource attribute.\n\nDo not confuse the IANA Media Types, formerly known as MIME types, as used for the attribute formatResource with the media type defined as an attribute value for the LIDO Resource Representation element. While the former refers to the type and subtype of the actual media file (e.g., audio/mpeg, image/png, or text/html), the latter differentiates the digital resources by their intended use and generic kind of medium (e.g., provided_audio, preview_image, or provided_text).\n\nThe use of the LIDO Resource Measurement Set may depend on specific use cases of an online service. It is recommended that partners in a data exchange or aggregation context reach an agreement about this.\nThe vocabulary for the type attribute of the LIDO Resource Representation element does not provide terms to designate variants of digital resources with respect to data exchange in the long term preservation context. The vocabulary may be extended, if necessary."^^ . "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_"^^ . . "Dimas Timmers" . "https://www.rsc.org/Merck-Index/reaction/$1"^^ . "ontology" . . "https://vocabularies.cessda.eu/vocabulary/CommonalityType?lang=en#code_"^^ . . _:N7a1e003f54ed459db96302c9395f5d51 "alexey.melnikov@isode.com" . "false"^^ . "Cambridge Structural Database" . "https://cohesindb.iqb.u-tokyo.ac.jp/browsepeak/eachpeak/$1"^^ . "https://biopragmatics.github.io/providers/pba/"^^ . . . "verbal autopsy" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Facility"^^ . . . . . "Zebrafish Phenotype Ontology" . "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id="^^ . "http://www.genomesize.com/result_species.php?id=$1"^^ . . . . "^\\d+$"^^ . "http://gmd.mpimp-golm.mpg.de/Spectrums/"^^ . . . . "phenomena" . "http://purl.obolibrary.org/obo/EPIO_"^^ . "dashr.expression" . . . "synbip.bts" . . . . . . "allyson.lister@oerc.ox.ac.uk" . . . "Broad Fungal Genome Initiative" . . "miRBase mature miRNA" . . "Yeast Searching for Transcriptional Regulators and Consensus Tracking" . . . . . . . . "categorical" . . . . . . . . . . . "https://www.enzyme-database.org/query.php?ec="^^ . . "https://credit.niso.org/contributor-roles/$1"^^ . . . . . "false"^^ . "gene" . . . . . . . . "sbml" . . "archdb" . . "false"^^ . . . . . "ess" . "Specimen Type Vocabulary" . . . "false"^^ . . . . "ontology" . . . . "ontoneo" . . "ACTI"^^ . . . . _:N9f41ec92cf964f2fae5707ae358c9874 "Steve Baskauf" . "sequence" . "José Victorino Ruiz Lavida" . . "Identifiers for space-related data from studies that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . . . "https://www.ebi.ac.uk/chembl/explore/tissue/"^^ . "^\\d+$"^^ . . . . . . "engineering" . . . "PK-DB" . . . . . "http://purl.obolibrary.org/obo/OMIT_"^^ . "Joanne Kamens" . . . . . "Database of Genomic Structural Variation - Variant" . "^ACTRN\\d+$"^^ . "http://purl.org/dc/dcam/$1"^^ . "microRNA Gene Database" . . "Prefixes useful in annotating documentation provenance." . "arba" . . "eukaryotic" . . "geologic geomorphology" . "Oonagh Brendike-Mannix" . . "engineering" . . . "chemistry databases" . "umls.aui" . . . . . . "natural producs" . . . . . . "http://purl.obolibrary.org/obo/TGMA_$1"^^ . . . "raras.class" . . . . . . "geologic orogen" . "faseb list" . "upa" . . "Wildlife Monitoring Ontology" . . "food" . "false"^^ . "http://sideeffects.embl.de/se/$1"^^ . "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"^^ . . "DCAT AP" . "cancer" . "bmbf.glossary" . . "ontology" . "https://lipidbank.jp/data/$1.cdx"^^ . "false"^^ . . . "dataplant" . . . . "Database of one-to-one ortholog information provided by the NCBI as a subset of their Gene resource. Used for users to access ortholog information for over 1000 species of vertebrates and arthropods."^^ . . "12345"^^ . . . . . . . "High-quality Automated and Manual Annotation of microbial Proteomes" . . . "false"^^ . "subject agnostic" . . . "sddo" . . "educational resources" . "A cell line collection"^^ . "^LDTP\\d+$"^^ . "^[sS][dD][yY]\\d+$"^^ . . "gary.bader@utoronto.ca" . . . . "vhog" . . "https://vegbank.org/cite/"^^ . . . "false"^^ . . . _:N5dda678f89af4d27868c98d0a250580e "Michael J. Lincoln MD" . . . "^\\d+$"^^ . . "^SIGNOR\\-[A-Z]+\\d+$"^^ . "civil engineering" . . . . . "false"^^ . "genome" . . . . . . "^(?:[a-zA-Z]+\\/)?[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . . . . . "monitoring" . . . . . "https://w3id.org/pmd/co/PMD_"^^ . "Kevin Boske" . . . "^\\d{8}$"^^ . . . "http://hawaii.eagle-i.net/i/$1"^^ . . "ddi.summarystatistictype" . "life science" . "image/movie" . "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data."^^ . . "false"^^ . "http://web.resource.org/cc/"^^ . "GPIb_IX_V"^^ . "sdy998"^^ . . . . . . . "ontome.profile" . "molecule" . "genetic variation" . . . . "Wormpep" . . "Subset of the OeAI Thesaurus for materials."^^ . . "transcription factor" . . "GitHub Issue" . . . "000001"^^ . "https://osdr.nasa.gov/bio/repo/data/hardware/$1"^^ . . "true"^^ . . "60316"^^ . "olaf.simons@pierre-marteau.com" . "^\\d{7}$"^^ . "sequence" . . . . "http://sweetontology.net/phenAtmoWind/"^^ . "false"^^ . "http://aber-owl.net" . . "SWEET Ontology Process State Change" . "botany" . . "false"^^ . . "1h68"^^ . . "Christophe Dunand" . . . . "001000"^^ . "ribocirc" . "JECFA provides identifiers for flavors, food additives, contaminants, toxicants, and veterinary drugs. Each entry includes chemical details, acceptable or tolerable intake limits, and links to related reports and monographs."^^ . "https://fungidb.org/fungidb/app/record/gene/"^^ . "http://sweetontology.net/realmOceanFloor/"^^ . . . . _:Nf9f5ea5a446f4583879f68c013b7fac6 "merocknyxta@gmail.com" . . "mgtbind.compound" . "FAIRsharing Subject Ontology" . "bibliography/documents" . . . . "http://purl.org/dc/terms/"^^ . "A_Horizon"^^ . . . "false"^^ . . "^\\d{5}$"^^ . _:N4467679543e14d4b989a9e489dbc694b "Jeff Horsburgh" . . . "chemical structure" . . . . "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"^^ . . . . . "SWEET Ontology Phenomena Atmosphere Cloud" . . . "https://www.deciphergenomics.org/syndrome/$1"^^ . . . "false"^^ . . "icpd.study" . . . . . . . "OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research."^^ . . "academy" . "true"^^ . "^[8-9]\\d{3}(/[0-3])?$"^^ . . . . . . "astrophysical" . "sequence" . . . "n"^^ . "https://sorgerlab.github.io/famplex/"^^ . . "http://purl.obolibrary.org/obo/OMP_"^^ . . "Friend of a Friend" . "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1"^^ . . . . . "plant phenotypes and traits" . "flowrepository" . . . "trnadbce" . . . . . "v1"^^ . . . "research" . . "http://purl.allotrope.org/ontologies/process#AFP_$1"^^ . "psdo" . . . . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data."^^ . . . . "jt6@sanger.ac.uk" . "ArrayMap" . "The AntiBody Sequence Database is a public dataset for antibody sequence data. It provides unique identifiers for antibody sequences, including both immunoglobulin and single-chain variable fragment sequences. These are are critical for immunological studies, and allows users to search and retrieve antibody sequences based on sequence similarity and specificity, and other biological properties."^^ . . . "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol="^^ . . . "SNOMEDCT_US_2025_09_01" . . "raymond@caltech.edu" . . . "^(MNXM\\d+|BIOMASS|WATER)$"^^ . "index" . . . . "^\\d+$"^^ . "ontology" . "vaccine" . . "gene" . "cdna/est" . . "Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard."^^ . . . . . "eolife" . . "https://data.chembiosys.de/assays/$1"^^ . . "lido.repositoryset" . . . . "Qualification Ontology" . . . "https://autoicdapi.com/reference/icd-11/"^^ . . . . . . . . . "^\\d+$"^^ . . . . . _:Nc85704a14d094f73856d5fa39e50393c "admin@admin.com" . . "genome/gene" . "Lozana Rossenova" . "Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]"^^ . . "AccelerationStateValue"^^ . . "false"^^ . . "^[a-z]{3}-[a-km-z0-9]{7}$"^^ . . . "ddi.datatype" . "0000630"^^ . "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein."^^ . "AGROVOC" . "algorithm"^^ . . "ugis@ebi.ac.uk" . . . "http://purl.obolibrary.org/obo/SBO_"^^ . . . "UniProt Keywords" . "CATH superfamily" . "http://purl.obolibrary.org/obo/CL_$1"^^ . "1"^^ . . "false"^^ . . _:N889fbbd105f74a07ba7944cb6b834fe5 . . "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." . . . "http://purl.obolibrary.org/obo/HsapDv_"^^ . "https://www.alzforum.org/mutations/"^^ . "strenda" . . "ChemDB" . . "life sciences, biology" . . . . . . "gro" . "sfam" . . . "sweet.phcy" . . "http://www.iec.ch/TC57/CIM#"^^ . "TA14985"^^ . . "https://w3id.org/faircookbook/"^^ . . "soil" . . . "CASGEN" . . . . "ontology" . . "mice" . "4PointResistanceSetup"^^ . "Contains identifiers of cohesin-related chromatin loops from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related chromatin loop. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information."^^ . . . . "crates" . . . . "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace."^^ . . "life sciences, biology" . . . . . "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines."^^ . . . . . . . . "26957"^^ . . . . "P23298"^^ . "https://www.iedb.org/mhc/"^^ . . "AADB12"^^ . "water" . . . . "Creative Biolabs antibody" . . "pto" . "Hadi Quesneville" . "21877"^^ . "somas" . "http://purl.obolibrary.org/obo/FAO_"^^ . "Ecological Trait-data Standard" . . "Leigh.Carmody@jax.org" . . . . . . . . . . "Minimal Information About Anatomy ontology" . "GABI" . "http://plugins.biogps.org/cgi-bin/wp.cgi?id="^^ . . "lipidomics" . "ontology" . . "false"^^ . "International Classification of Diseases, 9th Revision" . _:Nb2408a401a1244369bea7035a5ed22a7 "LOV Migration" . . "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$"^^ . . "false"^^ . . "ised" . "https://www.isrctn.com/"^^ . "oryzabase.strain" . "The Organisation for Economic Co-operation and Development (OECD) Harmonised Templates (OHTs) are standard data formats for reporting information used for the risk assessment of chemicals, mainly studies done on chemicals to determine their properties or effects on human health and the environment, but also for storing data on use and exposure."^^ . . . . . "http://purl.obolibrary.org/obo/CDAO_$1"^^ . "pao" . . . "timrobertson100@gmail.com" . . "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form."^^ . . . . "lang"^^ . "expression" . . "icd11" . "http://data.europa.eu/esco/occupation/"^^ . . . . "standardReferenceSpecimen"^^ . . . "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . "MathModDB Ontology and Knowledge Graph for Mathematical Models" . . . . . . "1"^^ . . . . . . "true"^^ . . "false"^^ . "SWEET Ontology Representation Scientific Model" . "Plasmodium Life Cycle" . . "A structured controlled vocabulary of the anatomy of mosquitoes."^^ . "sweet.propp" . . "Aquatic Sciences and Fisheries Information System" . "sopropst" . "sequence" . . . "Time Zone" . . _:Nbb08232225004770b70b91cb9dc3cf57 "NFDI Section Metadata WG Ontology Harmonization and Mapping" . . "learning resources" . "EBI-2307691"^^ . . "suzia@stanford.edu" . . "^\\d{7}$"^^ . "http://sweetontology.net/phenAtmoPressure/$1"^^ . "http://astrothesaurus.org/uat/$1"^^ . . . . "loc.resourcetype" . "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1"^^ . "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information."^^ . . "ensembl.fungi" . . . . "psi-mi" . "life sciences, biology" . . "http://purl.obolibrary.org/obo/FBSP_"^^ . "ontology" . . . "cmo" . "Plant Phenology Ontology" . "https://dblp.org/rdf/schema#"^^ . "KEGG Drug" . . . "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links."^^ . "false"^^ . . . . "false"^^ . . "tdwg.abcd" . "Matúš Kalaš" . . "genome/gene" . . . . "RETIRED_EHDAA2" . . "Coleoptera Anatomy Ontology" . . . . . . "ConductionRole"^^ . . "https://gxy.io/GTN:$1"^^ . . . "^\\d{7}$"^^ . "Online Mendelian Inheritance in Animals" . . . "pror" . "http://purl.obolibrary.org/obo/IEV_$1"^^ . "http://purl.obolibrary.org/obo/FBcv_$1"^^ . . . . . "dalia.community" . . . . . . "Spectra Hash Code" . . . "262393"^^ . . . . . "ChemicalRole"^^ . "social sciences" . "an RDF vocabulary for the security metadata definitions"^^ . . . . "genetics" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Front"^^ . "protein" . . "environmental science" . . "protein" . "FlyBase Qualifiers" . . . . . . . "LigandBox" . . . . "An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator)."^^ . "https://cropontology.org/rdf/CO_331:$1"^^ . . . . . "Satoshi Fukuchi" . . "mmp.ref" . . . "brick" . "chembl.compound" . . . . "DailyMed" . . "https://bioregistry.io/resolve/github/issue/$1"^^ . . . . . . "http://www.owl-ontologies.com/BiodiversityOntologyFull.owl#"^^ . "biology" . . . _:N24d4866042c24d8eb1c14481f308d341 "maria.herrero@kcl.ac.uk" . "physiology" . "jmcl@ebi.ac.uk" . . . . . . "HOMO_3.PE998"^^ . "https://florabase.dpaw.wa.gov.au/browse/profile/"^^ . "Dynamic Ecological Information Management System - Site and Dataset Registry - Taxonomy" . "^\\d{7}$"^^ . "http://purl.obolibrary.org/obo/RXNO_$1"^^ . "^\\d{7}$"^^ . . . "http://purl.obolibrary.org/obo/TAXRANK_"^^ . . . "Phenoscape Publication" . . . . . . "Competence Ontology" . "^UPC\\d{5}$"^^ . . "phenotype" . . "FBgn0011293"^^ . . "sohutr" . "soreaabl" . "dataplant" . . "Vaccine administered code set" . "Gene Location" . "https://github.com/monarch-initiative/mondo/issues/"^^ . "http://sweetontology.net/phenAtmoFog/"^^ . "https://bioregistry.io/fbol:"^^ . "uberon.issue" . . "0001055"^^ . . . . . "false"^^ . "Arslaan Zahid" . . . . . . . . . "david.wishart@ualberta.ca" . . . . . . "NFDI MatWerk Ontology" . . . . . . "false"^^ . . . . "^[a-z_A-Z0-9]+$"^^ . "false"^^ . "false"^^ . . . . "https://semanticscience.org/resource/SIO_$1"^^ . "https://saref.etsi.org/core/$1"^^ . . "Minimum PDDI Information Ontology" . "M0001"^^ . "citation" . "condo" . . "The quality component of the Allotrope ontology suite"^^ . . . "foodex2" . . . "http://ecmdb.ca/compounds/"^^ . "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_"^^ . . "iceberg.family" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time"^^ . . . . "nfdi4ing" . . . . . . . . . "http://www-snorna.biotoul.fr/plus.php?id="^^ . "comptox" . . . . "sweet.propfr" . . "CADAFLAT00006211"^^ . . "Susan J. Brown" . . . "F11903"^^ . . "Learning Resource Metadata Innovation Terms" . "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies."^^ . . . "MESHPP" . . . . "Ontology representation of the Climate and Forecast (CF) standard names parameter vocabulary, which is intended for use with climate and forecast data in the atmosphere, surface and ocean domains. Every CF parameter is captured as a SKOS concept.This vocabulary is a simplified version of the CF vocabulary P07 from the NERC Vocabulary Server (NVS), National Oceanography Centre - British Oceanographic Data Centre (BODC), https://vocab.nerc.ac.uk."^^ . . "RepeatsDB Structure" . . "Fission Yeast Experimental Conditions Ontology" . . "proteomics" . . . . "life science" . . . . . . "0000066"^^ . . . "false"^^ . . . . . "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands."^^ . . . . . . "sweet.phcr" . . . . . "^[A-Za-z0-9]+$"^^ . . "SWEET Ontology State Time" . . "biology" . . "FHIR United States Implementation Guides" . . . . . . "A typology of methods used to translate data collection instruments, including questionnaires, individual questions, measurements, data capture flows, etc."^^ . . . . "Cotton Ontology" . . . "http://purl.obolibrary.org/obo/NCRO_"^^ . . "paper" . . "license" . . . "metabolite" . . . . "NCBI_GeneID" . . "USA National Service Center Number" . . "A web-developer centric archive of prefixes and URI prefixes" . "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1"^^ . . . "cryoem" . . "http://func.mshri.on.ca/fly/genes/list_functional_scores/"^^ . . . "SWEET Ontology Phenomena Ocean Dynamics" . . . "Units in OBOE"^^ . "nucleotide" . "FBtr0084214"^^ . . . . . "http://purls.helmholtz-metadaten.de/mwo/mwo_$1"^^ . . . . "https://www.ebi.ac.uk/pride/archive/projects/$1"^^ . . "protein" . . . . . . "SI-A-2.2.6"^^ . . . "taxonomy" . . "dip" . "493771"^^ . . "https://www.ebi.ac.uk/interpro/genomeproperties/#"^^ . . . . . . "mi" . . . . . "https://saref.etsi.org/saref4ehaw/$1"^^ . . "abcd" . "sorelsc" . "ABE-0009634"^^ . . . . _:N8299cc1e3d6d44d0a2d3a4b2028ea62f "takatter@dbcls.rois.ac.jp" . "https://www.dpvweb.net/dpv/showdpv/?dpvno=$1"^^ . "https://phagedive.dsmz.de/strain/"^^ . "false"^^ . "http://autism.mindspec.org/GeneDetail/$1"^^ . "ontology" . . . . "ontology" . . "false"^^ . "Data Quality Vocabulary" . _:N62808458561e40a2975edf388ee84e0b "curator@inoh.org" . . "ontology" . . "fdd000613"^^ . "GO Chemicals" . "false"^^ . "history" . . "true"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Realm"^^ . . "xhv" . . "https://gitlab.com/$1"^^ . . . "gene" . "VMH reaction" . . . . "http://sweetontology.net/matrIndustrial/"^^ . "j.detras@cgiar.org" . . "functional genomics" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Energy"^^ . . . "false"^^ . "RNA Virus Database" . . . "sophst" . . . "FID BAUdigital Subject Headings" . "RC00001"^^ . . . . "http://sweetontology.net/matrRockIgneous/"^^ . "0000079"^^ . . "01.01.005"^^ . . . . "^\\d+$"^^ . "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank."^^ . "https://data.chembiosys.de/investigations/$1"^^ . . "https://lincs.hms.harvard.edu/db/cells/"^^ . "http://api.hymao.org/api/ref/"^^ . "Medical Data Models" . . . "http://www.cidoc-crm.org/cidoc-crm/"^^ . . "ortholog" . . . "Decentralized Identifier" . "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data."^^ . "false"^^ . "An ontology transcription of definitions in the Functional Mock-up Interface (FMI) standard document from https://fmi-standard.org/ that enables representing Functional Mock-up Units (FMUs) in RDF"^^ . . "wikipathways.gpml" . "Cell line collections (Providers)"^^ . "Ismail Fliss" . "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe."^^ . "false"^^ . "https://aftol.umn.edu/glossary?category="^^ . _:N7a1e003f54ed459db96302c9395f5d51 . "The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases"^^ . "cdna/est" . . "false"^^ . . . "e0333"^^ . "sequence" . "http://sweetontology.net/phenReaction/$1"^^ . "taxonomy" . "materials" . "^ENSGT\\d+$"^^ . . . "https://www.mlcommons.org/mlc-id/$1"^^ . . . . . . . . . "http://sweetontology.net/matrAnimal/$1"^^ . . "false"^^ . . . . "SWEET Ontology Property Chemical" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Dynamics"^^ . . . . . . . . "ontology" . . "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process."^^ . . . . "NIF Standard Ontology: Digital Resources" . . "https://vocabularies.cessda.eu/vocabulary/GeneralDataFormat?lang=en#code_"^^ . . . "true"^^ . . . . "^\\d+$"^^ . . "Kathryn Dumschott" . "http://func.mshri.on.ca/human/genes/list_functional_scores/$1"^^ . . . . "Product number for the European Medicines Agency"^^ . "http://purl.obolibrary.org/obo/CVDO_"^^ . "centrally registered identifier" . "http://ciliate.org/index.php/feature/details/$1"^^ . . . . "Manufacturers of Vaccines" . "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information."^^ . "endlessforms.collection" . "protein" . . "false"^^ . "RIKEN Bioresource Center Cell Bank" . . . "door" . . . . "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:"^^ . . "https://www.uniprot.org/database/$1"^^ . . . . . . "The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response."^^ . "17165"^^ . "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process."^^ . "true"^^ . . "^\\d{7}$"^^ . . "Array"^^ . . "nif.dysfunction" . . . . . "IUPHAR_LIGAND" . . . "The choice of the Record Type should take into account both the form or function of a document, an object or work of art, and the goal of the cataloging approach with respect to the logical arrangement of the whole and its parts."^^ . "A nomenclatural ontology for biological names" . . . . . . "false"^^ . . "taxon" . "false"^^ . . . . "literature curation" . . . . . . "lynn.schriml@gmail.com" . . . . . "https://swbiodiversity.org/seinet/taxa/index.php?taxon="^^ . . "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases"^^ . . . . . _:N0f48109c59994e01a05df4447a9a9803 "contact-terminologietal@inist.fr" . . . "https://www.swisslipids.org/#/entity/SLM:$1"^^ . . "A product catalog for PerkinElmer, a laboratory supplies vendor"^^ . . . "opb" . . . . . . . "digital planning and construction" . . . "https://credit.niso.org/contributor-roles/"^^ . . . "SWEET Ontology Realm" . . . . . "REPRODUCE-ME Ontology" . "http://www.bigdatau.org/schema#$1"^^ . . . . . "Katy Börner" . . . "^\\d+\\.\\d+$"^^ . . "ontology" . "building information modeling" . "Sharing descriptive Metadata is the first essential step towards Open Scientific Data. With this in mind, Maggot was specifically designed to annotate datasets by creating a metadata file to attach to the storage space. Indeed, it allows users to easily add descriptive metadata to datasets produced within a collective of people (research unit, platform, multi-partner project, etc.). This approach fits perfectly into a data management plan as it addresses the issues of data organization and documentation, data storage and frictionless metadata sharing within this same collective and beyond."^^ . . "H2020-EU.2.3."^^ . . . "nfdi4cat" . "ontology" . . . . . . "https://si-digital-framework.org/SI/decisions/$1"^^ . . . . . . . . . "clinical studies" . "ontology" . . . . . "gomfid" . . . . . . "ARBA00000001"^^ . . "http://sweetontology.net/reprDataService/$1"^^ . . "86"^^ . "3000887619"^^ . "^\\d{7}$"^^ . . . . . . . . . "false"^^ . . "http://sweetontology.net/phenEnvirImpact/"^^ . "worfdb" . "false"^^ . . . . . . . . . "rcc"^^ . "true"^^ . . . . "false"^^ . . . . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Biology"^^ . "molbase.sheffield" . . . . . . "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors."^^ . . "Fachsystematik LinSearch" . "sequence" . . "^KIAA\\d{4}$"^^ . "earth sciences" . "mzspec" . "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends)."^^ . . . "^\\d+$"^^ . . . _:Nfecb86e96a3644afbdc7578fabbbb804 "rafael.goncalves@stanford.edu" . "c0000005"^^ . "Grant"^^ . "Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific."^^ . . "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation."^^ . "embryonic stem cell" . "^\\d+$"^^ . . . . "Bill Duncan" . . "image/movie" . . . "false"^^ . . . . . . "knockout" . . "https://caps.ncbs.res.in/pass2.8/?q=superfamily/"^^ . . "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm"^^ . . . . . . "Database of Genomic Structural Variation - Study" . . . "rna" . "organism" . "obo" . "drosophila" . . . . _:N165bb353058b4eee85783cd2522f0b56 "eVOC mailing list" . "mmdb" . . "markley@nmrfam.wisc.edu" . . . . . . . . "OECD Harmonised Templates" . . . "^ISRCTN\\d+$"^^ . . . . "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id="^^ . . "Yeast Metabolome Database" . "Conservation"^^ . . "http://data.europa.eu/r5r/"^^ . . . . "^DDB_G\\d+$"^^ . . "https://www.ncbi.nlm.nih.gov/sra/"^^ . . "0016"^^ . . . "http://www.cidoc-crm.org/cidoc-crm/$1"^^ . . "false"^^ . . . . "GO Evidence Code" . "Woody Plant Ontology" . "false"^^ . . . "ccf" . "expression" . . . . "disease model" . "https://onto.tib.eu/destf/cs/"^^ . "nztcs" . . . . . "paxdb.organism" . . . . . . "NCBI Registry" . . . . "nfdixcs" . . "false"^^ . "http://pax-db.org/#!species/$1"^^ . . . . "clinical studies" . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . . "63"^^ . "morphology" . . . "morbidity" . . "http://sweetontology.net/realmGeol/"^^ . . "compound" . . "ontology" . "http://www.fao.org/gsfaonline/additives/details.html?id=$1"^^ . . . . "SWEET Ontology Realm Earth Reference" . . "false"^^ . "nasaosdr.hardware" . . "BaseFlow"^^ . "expression data" . "http://sweetontology.net/reprSpace/$1"^^ . . . "00000180"^^ . . "EDDA Study Designs Taxonomy" . . . . . "ontology" . "AccretionaryPrism"^^ . . "^T3\\d+$"^^ . "portal" . . . . . . "SWRL enables Horn-like rules to be combined with an OWL knowledge base."^^ . . . . . . . . . "TB2:S1000"^^ . . "person" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Planetary Climate"^^ . "https://www.nfdi.de/wp-content/uploads/2021/05/nfdi_4_health_Logo.png"^^ . . "structure" . . "MSMEG_3769"^^ . . "false"^^ . "https://modeldb.science/"^^ . . "false"^^ . "bioinformatics" . "chemistry databases" . . "health/disease" . . "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1"^^ . . . . . . . "HMS Library of Integrated Network-based Cellular Signatures Datasets" . "DataCollection"^^ . . "https://bioregistry.io/treebase:"^^ . . . . . "Ablation"^^ . "genomic" . . . "classification" . . . "http://www.w3.org/ns/org#"^^ . . . "sdmx" . . . . . . "UPVAR" . "body_symmetry"^^ . . . "CH_001923"^^ . "wikidata" . . "UPISO" . . . "EBI Ontology Lookup Service" . . "botany" . . "http://terminology.lido-schema.org/"^^ . "small molecule" . "health/disease" . . . . . . . . . . "intact.molecule" . "https://database.factgrid.de/entity/"^^ . . _:N54234c743b464ca3b0b4ed8f24c7a9c1 "kdurante@stanford.edu" . "false"^^ . . . "state chemical" . . "BOLD Systems taxon" . "The Graphic Descriptor Ontology (GDO) is intended for use in describing graphics that represent the form of objects. It uses the language of visual communication, illustration, and technical drawing. The GDO is rooted in the Basic Formal Ontology (BFO) and uses several classes from the Information Entity Ontology of the Common Core Ontologies as a mid-level ontology. [from https://gdo.endlessforms.info/about]"^^ . "silvio.tosatto@unipd.it" . . "ontology/terminology/nomenclature" . "contributor roles" . . . . _:N58c479fcec8e4f58ae566ce3f2d93c90 . . . . . "http://rdfs.org/sioc/services#"^^ . . . . . "https://data.chembiosys.de/projects/$1"^^ . "Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models."^^ . "https://ocid.ontochem.com/prefname?ocid="^^ . . "GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42)."^^ . . "^PPR\\d+$"^^ . "false"^^ . . "SWEET Ontology State Role Biological" . . . "^[A-Za-z_]+$"^^ . "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to curation records that collect information extracted from specific publications."^^ . "SWEET Ontology State Ordinal" . "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . . . . . "chemical structure" . . "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum."^^ . "https://www.confident-conference.org/index.php/Event:"^^ . "genome/gene" . . "https://sargon-n5geh.netlify.app/ontology/1.0/object_properties/"^^ . . "nfdi4ing" . "spdx.licenses" . "protocols and materials databases" . "^(\\d|\\w)+-\\d$"^^ . "Antibiotic resistance genes and mutations"^^ . . "https://data.chembiosys.de/tags/$1"^^ . . "^\\d{7}$"^^ . "cell" . . "CustomsUnion"^^ . . . "^\\d{7}$"^^ . . . . "A vocabulary and ontology repository for agronomy and related domains." . . . . . . "miscellaneous" . . "Yosef Shiloh" . "https://odc-tbi.org/data/$1"^^ . . . . "educational science" . . "false"^^ . . . . "Kristina Fischer" . . "organism" . "ctd.disease" . "biomaterial supply resource" . . . . "Cellosaurus Registry" . . . "^[FKPU]\\d{3}$"^^ . "^MCDS_S_[a-zA-Z0-9]{1,10}$"^^ . . . . . . . . . . "mouse strain" . . "classification" . . "vmh.gene" . . "quality" . "https://purl.infoflora.ch/concept/ifloprop/$1"^^ . . . . "Work"^^ . "metadata standardization" . . "false"^^ . . . "false"^^ . "Raras Class" . . . . "^\\d{7}$"^^ . . . . "botany" . . . . . . "https://eds.gene.le.ac.uk/home.php?select_db=$1"^^ . "https://disprot.org/"^^ . . . . . . "gene expression" . "sosto" . . . "ppdb" . . "Clare Pilgrim" . "NONCODE v4 Transcript" . . . "^\\d{6,8}$"^^ . . "organism-specific databases" . "https://cropontology.org/rdf/CO_370:"^^ . . "bmrb.entry" . "https://cropontology.org/rdf/CO_321:"^^ . . "ZFA_RETIRED" . . "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." . . . "Jennifer C. Girón" . . . "false"^^ . "Software Heritage is the universal archive of software source code."^^ . . . . "http://purl.obolibrary.org/obo/IOIO_"^^ . "tRNA Gene Database" . "^[A-Za-z0-9]+$"^^ . "^\\d{7}$"^^ . "http://purl.obolibrary.org/obo/MOD_$1"^^ . . . . . . "http://purl.org/pan-science/PaNET/PaNET$1"^^ . . . . "VIPERdb" . "3304"^^ . . . "http://purl.obolibrary.org/obo/MA_$1"^^ . . . "engineering" . . "anatomy" . "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world."^^ . . "Anne Thessen" . . . . . . . "^\\d+$"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Sky"^^ . . "^\\d{7}$"^^ . "false"^^ . . "genome annotation databases" . . "BatchelorC@rsc.org" . . . . . "https://smid-db.org/smid/$1"^^ . "subject agnostic" . . "https://www.ribocentre.org/docs/"^^ . . . "false"^^ . . . "ontology" . "http://www.radiomics.org/RO/"^^ . . "true"^^ . . "Metabolomics Workbench Study" . "ontology" . . "^\\d+$"^^ . "ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for human proteins that interact with chemoproteomic probes."^^ . "Maxwell L. Neal" . "false"^^ . "01625"^^ . "false"^^ . "false"^^ . . . . "dna" . . . "https://w3id.org/lehrplan/ontology/LP_"^^ . . . . "http://purl.obolibrary.org/obo/PSDO_$1"^^ . . . . . "Natural Product-Drug Interaction Research Data Repository" . "false"^^ . . . . . . . "saskia.hiltemann@rz.uni-freiburg.de" . . . . "http://data.europa.eu/esco/occupation/$1"^^ . "matrixdb" . . . "regulation" . . "false"^^ . . . "https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/"^^ . . . "000140" . . . "anatomy" . . . . . "false"^^ . . "EHDAA:2185"^^ . "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information."^^ . "1046"^^ . "ALA"^^ . . . "vocabularies" . . . . . "life science" . _:N088ca92780694475bd46ae9459fb9321 "jaiswalp@oregonstate.edu" . . . "false"^^ . "false"^^ . . "https://ec.europa.eu/info/funding-tenders/opportunities/portal/screen/opportunities/topic-details/"^^ . "cdna/est" . . "_space_group_symop.operation_xyz"^^ . . "^FDB\\d+$"^^ . . "^C?\\d+$"^^ . . . "nfdi4ing" . . . . . . "commoncoreontology" . . "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1"^^ . . "AT5G05330"^^ . "TransportDB" . "educational resources" . . "biocuration" . . "false"^^ . "emaps" . "false"^^ . . . "ontology" . . "https://aopwiki.org/stressors/$1"^^ . "^[0-9]+$"^^ . . . "glycosciences.db" . . . "http://purl.obolibrary.org/obo/IDOMAL_"^^ . . . "hoganwr@gmail.com" . . . . "uniprot.database" . "Naouel Karam" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Model"^^ . . . . . "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$"^^ . . . . "sov:WRfXPg8dantKVubE3HX8pw"^^ . . . "allele" . "false"^^ . "^\\d+$"^^ . . "animal husbandry" . "classification" . . . . . . "Addiction Ontology" . . "vestibular-schwannoma-seg"^^ . . . . . . . . . "A controlled vocabulary for education levels, such as primary eduation, secondary education, and post-secondary education"^^ . . "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1"^^ . . . "engineering" . "ClinicalTrials.gov" . . "^\\d+$"^^ . . . "sweet.phgg" . . . . "false"^^ . "^\\w{4}\\d{8}$"^^ . . . . . . . "ontology" . . . . . "Antibody-Antigen Complex Database" . . . . . . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc."^^ . . . "^((S\\d{4}-\\d{4}\\(\\d{2}\\)\\d{5})|(B\\d-\\d{3}-\\d{5}-\\d/\\d{5}))-[\\d|X]$"^^ . . . . "genome/gene" . . . "https://repeatsdb.org/protein/"^^ . . "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:"^^ . . . "true"^^ . "http://purl.obolibrary.org/obo/LIPRO_$1"^^ . . . "KilnRegion"^^ . . "andrew.mcshan@chemistry.gatech.edu" . . . . "bco" . "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1"^^ . "mutant" . "sequence" . . . "protein" . "interaction/pathway" . . . "panther.pathway" . . . . "obo" . . . . . "A vocabulary service for the social sciences, covering the Data Documentation Initiative (DDI) is an international standard for describing data produced by surveys and other observational methods in the social, behavioural, economic, and health sciences."^^ . "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery."^^ . "http://uri.neuinfo.org/nif/nifstd/nlx_dys_"^^ . . "careerPrizeMoney"^^ . "genome" . . . . . . . "https://purls.helmholtz-metadaten.de/prima/dataset#$1"^^ . . . . . . . . . . . . "ecology" . "RNA ontology" . "rgd" . "https://w3id.org/oc/meta/$1"^^ . . "NMR-instrument specific component of metabolomics investigations" . "https://www.zobodat.at/arten.php?id=$1"^^ . . . "natural product" . . "realm" . . "patricia.siguier@univ-tlse3.fr" . "ontology" . "false"^^ . . . . "locn" . . . . "registry" . . . "false"^^ . . "CASID" . . . . . . "ontology" . . "^\\d{7}$"^^ . . . . "somais" . . "machine learning" . "jens.klump@csiro.au" . . . . . "false"^^ . . "0001021"^^ . "https://bioregistry.io/resolve/github/pull/$1"^^ . "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist="^^ . . "A vocabulary for e-commerce"^^ . . . . . "Resource" . . . "false"^^ . "NIF Standard Ontology" . . "http://virtualflybrain.org/reports/"^^ . "false"^^ . . . . "InformationResource"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere"^^ . . . "false"^^ . . . . "true"^^ . . "false"^^ . . . "hydrogeology" . "life science" . "https://hamap.expasy.org/unirule/"^^ . "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions."^^ . "A battery interface domain ontology based on EMMO."^^ . . . "false"^^ . . "SWEET Ontology Phenomena Wave" . "^\\d+$"^^ . "myco.smeg" . . "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym="^^ . . . "^\\d+$"^^ . "Sensitive Data Ontology" . . . . . "https://w3id.org/okn/o/sd#$1"^^ . . "15997-2"^^ . . "^\\w+$"^^ . "Zhi Xie" . . "http://purl.obolibrary.org/obo/MOBIO_$1"^^ . . . "groom@ccdc.cam.ac.uk" . "The OpenID Connect vocabulary used by the Solid-OIDC authentication specification"^^ . . . . "EDAM Topic" . "henrich@embl.de" . "ontology" . . . . . "SNOMED" . . . "OpenADR ontology" . "A condensate-modulating drug"^^ . "Saurav Kumar" . "phenomena" . . . "false"^^ . "mastodon" . . "dataplant" . . . . "http://sweetontology.net/reprMathSolution/"^^ . "zebrafish line" . . . "http://terminology.hl7.org/CodeSystem/v2-$1"^^ . . . "false"^^ . "false"^^ . "http://purl.obolibrary.org/obo/CHR_$1"^^ . . "chemistry" . "http://data.europa.eu/r5r/$1"^^ . "Neuroscience Multi-Omic BRAIN Initiative Data" . . . "engineering" . "https://data.chembiosys.de/publications/"^^ . "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id="^^ . "chemical compound" . . . . "expression" . "trade" . "Modern Science Ontology" . . . "^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$"^^ . . "BN000065"^^ . . . . "http://bioportal.bioontology.org/ontologies/$1"^^ . "^[a-zA-Z0-9_\\.]+$"^^ . "Marie-Angélique Laporte" . "database" . . . . . . _:N4c2ae3793175435e99ae1a272a8f9d50 "PhenX Admin" . . . . . . "dna" . . . . "https://cropontology.org/rdf/CO_326:"^^ . "^cpd\\d+$"^^ . . . . . . . . . . . . "false"^^ . . "false"^^ . . . . . . . "cellular_component" . . . "false"^^ . . . "mbrochhausen@gmail.com" . . "International repository of Adverse Outcome Pathways."^^ . . . . . . . . . . "phosphopoint.protein" . . . . . . . "https://w3id.org/evorao/$1"^^ . . "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY|UPS)\\d+$"^^ . . . . "^\\d+$"^^ . "^ST[0-9]{6}$"^^ . . . . . . "^[1-9][0-9]{0,7}-[0-9]$"^^ . . . . "Goal"^^ . "pubchem.aid" . . "https://ror.org/$1"^^ . . . . . "cheminf" . "fema" . . "itmctr" . . . . . "https://www.cancerimagingarchive.net/collection/"^^ . "psi-mi" . . . "^(ZINC)?\\d+$"^^ . . "https://chemprosquare.idrblab.net/data/target/details/$1"^^ . "436154da-bcf1-4130-9c8b-120ff9a888f2"^^ . "Saskia Hiltemann" . "true"^^ . . . "martin.pospisek@natur.cuni.cz" . . . . . . "Age"^^ . . "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$"^^ . "structure" . . "Irina Medvedeva" . "bertram@helix.mgh.harvard.edu" . . . "aop.events" . . . . "sweet.repdf" . . . . "diagnosis" . . . . "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view."^^ . . . "http://arabidopsis.info/StockInfo?NASC_id="^^ . . "NASA Open Science Data Repository Subject" . "fine arts" . . . . "The Gaia-X ontology defines classes and properties for describing participants, service offerings, resources, and compliance credentials within the Gaia-X federated data infrastructure ecosystem. It provides machine-readable SHACL shapes and JSON-LD contexts for verifiable credentials in conformity with the Gaia-X Trust Framework."^^ . . "ESCO Occupation" . . . . "TemplatedLink"^^ . "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology"^^ . . . . . "https://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1"^^ . "http://www.w3.org/ns/dcat#$1"^^ . "clingen.curation" . . . . "genomics" . "webelements" . "Allergy"^^ . . . "A linked ontology for archaeological data."^^ . . "SNOMEDCT_US_2024_03_01" . . . . . "icd9" . . . . . . "protein family/group databases" . "GRDDL is a mechanism for Gleaning Resource Descriptions from Dialects of Languages. It is a technique for obtaining RDF data from XML documents and in particular XHTML pages. Authors may explicitly associate documents with transformation algorithms, typically represented in XSLT, using a link element in the head of the document. Alternatively, the information needed to obtain the transformation may be held in an associated metadata profile document or namespace document. Clients reading the document can follow links across the Web using techniques described in the GRDDL specification to discover the appropriate transformations. This document uses a number of examples from the GRDDL Use Cases document to illustrate, in detail, the techniques GRDDL provides for associating documents with appropriate instructions for extracting any embedded data. (from homepage)"^^ . . "sweet.reagb" . . . "8497"^^ . "^\\d+$"^^ . . . . . "oryzabase.stage" . . "phenotype" . . . . . "biosimulations" . "ontology" . . "https://www.nfdi.de/wp-content/uploads/2023/08/Fairagro_Logo_mittelachsig_Verklauf_cmyk.png"^^ . "foundational ontologies" . "vido" . "Biocompute Object" . "mass flux" . . "http://www.w3.org/2001/XMLSchema#"^^ . "false"^^ . "preclinical studies" . "false"^^ . . . "Lexvo Ontology" . "Identifier for a species in iNaturalist"^^ . . "E. coli Metabolite Database" . . "https://bioregistry.io/registry/$1" . "ssrn.article" . "civil engineering" . . "mirnest" . "http://sweetontology.net/propFraction/$1"^^ . "Cell Line Database" . . . "https://scicrunch.org/scicrunch/interlex/view/ilx_$1"^^ . "Karen.Christie@jax.org" . "Stefan Günther" . "https://www.kegg.jp/entry/$1"^^ . . "E-MTAB-2037"^^ . . . . . . . . "caro" . . "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/"^^ . . "disease" . . . "sweet.propst" . "http://bimerr.iot.linkeddata.es/def/building#$1"^^ . . "sosttf" . . . . . "false"^^ . . . . "4"^^ . . . . . "http://www.phosphosite.org/proteinAction.do?id=$1"^^ . _:N4b84693348df461993b954b9ae2f5dfb "Jim Amsden" . . . . "obo" . . . . . "ontology" . "true"^^ . . "^\\d+$"^^ . . . "^KCT\\d+$"^^ . "curriculum" . . "Archival Resource Key" . . . . . "https://www.gwascentral.org/study/$1"^^ . . "https://chemprosquare.idrblab.net/data/target/details/"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Line"^^ . . . "mito" . "^PA\\d+$"^^ . . . "http://purl.org/lobid/lv#$1"^^ . . . "Smart Applications Reference ontology" . . . . . . "This is the computational workflow module of the Provenance Information for Materials Science (PRIMA) Ontology, version 3.0, aligned with PMDco v3 and based on BFO (Basic Formal Ontology). [from homepage]"^^ . . "dragondb.locus" . . . . . . . . "tadirah" . "Heng Zheng" . "http://sweetontology.net/matrEnergy/"^^ . . . "^\\d{7}$"^^ . . "http://sweetontology.net/realmLandVolcanic/$1"^^ . . . "https://www.abmgood.com/search?query=$1"^^ . . . "false"^^ . . . . . "funcbase.mouse" . . "coypu" . "life science" . "Christian Hauschke" . . . . "false"^^ . "cco" . . "biomarkerkb.biomarker" . "^\\d+$"^^ . . . "arrayexpress.platform" . . . . . . . . . "NLXCHEM covers chemicals. Most classes are also in ChEBI."^^ . "number for the Lattes Platform entry on the person or group. Relationship between entry and subject must be supported by a source."^^ . . "Ardan Patwardhan" . "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes"^^ . . . . . "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions." . . . . . . . . "http://sweetontology.net/humanCommerce/$1"^^ . . . . . "The pattern for identifiers in the given resource" . . . . . "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS."^^ . "dna" . "obo" . "https://bioregistry.io/metaregistry/cellosaurus/"^^ . "mavedb" . "http://www.pantree.org/node/annotationNode.jsp?id=$1"^^ . . . "false"^^ . "false"^^ . . . . "cnt" . . "drug" . . . "cordis.project" .