. . . "The NFDI4DS ontology (nfdi4dso) is an ontology describing various resources all resources (datasets, data providers, persons, projects and other entities) within the domain of NFDI4DataScience. nfdi4dso is a module that builds upon the NFDIcore Ontology (https://ise-fizkarlsruhe.github.io/nfdicore/2.0.0/) and maintains alignment with the Basic Formal Ontology (BFO). [from homepage]"^^ . . "https://urgi.versailles.inra.fr/gnpis/#result/term="^^ . "^\\d{1,7}$"^^ . "life science" . "false"^^ . "FAO/WHO_standards" . . . . . "population genetics" . "https://bioregistry.io/prints:"^^ . _:Nb82a099b007d4d8f8ccac1262c01eaf1 . "traumatology" . "biomedical science" . "http://purl.org/spar/pro/"^^ . . . . . . "^osa-miR\\d{3,5}[a-z]{0,1}$"^^ . . "narcis" . "http://sweetontology.net/phenOceanCoastal/"^^ . . . . "false"^^ . . . "primary school type" . . . "polytraits.trait" . . "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more."^^ . . "oarcs" . "cabri" . . "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases."^^ . . . . . "emmo.cif" . . . "astd" . . "false"^^ . . . . "The material properties ontology provides the vocabulary to describe the composition of building elements."^^ . . . . . "kcoyle@kcoyle.net" . "Joshua Orvis" . . "Rice Metabolic Pathways" . . . "12300"^^ . . "http://purl.obolibrary.org/obo/PCO_"^^ . "^\\d{7}$"^^ . . . "sorepsf" . . . "ABE-0009634"^^ . "modsci" . . "FAIRSharing" . . . . "Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond."^^ . . . . "iceo" . . . . . . . . . "gene" . . . . . . "false"^^ . . "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"^^ . . . "AvailablePotentialEnergy"^^ . . "ECOCYC" . . "https://cropontology.org/rdf/CO_337:$1"^^ . . . . "cell" . . "subject agnostic" . . "wot.hypermedia" . "https://cropontology.org/rdf/CO_347:$1"^^ . . "biomedical science" . . . . . . . . "Henning Hermjakob" . "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon."^^ . . . . . . . "1"^^ . . "AUSSDA"^^ . . . . . . . . . . . . . "label"^^ . "nlx.dys" . . "Antibody-Antigen Complex Database" . . . "FHIR United States Implementation Guides" . . . "classification" . "Oonagh Brendike-Mannix" . . . . . . . . . . . . . "funcbase.mouse" . . "Lindsay Cowell" . . "http://purl.org/cerif/frapo/$1"^^ . . . . . "^BE\\d{7}$"^^ . . . . . "count" . . . "http://purl.obolibrary.org/obo/RS_$1"^^ . . . . . . "https://query.biodeep.cn/metabolite/$1"^^ . "hendrik.borgelt@tu-dortmund.de" . "^\\d{7}$"^^ . "https://www.kaggle.com/"^^ . . . "https://oid-base.com/get/$1" . . . "life sciences, biology" . . "^\\d{7}$"^^ . "false"^^ . . . . . . "obo" . . . . . . . "data analysis" . "false"^^ . "Bioregistry Collections" . "exposure" . . . "PubMed ID" . . . . . . . . . "agriculture" . . . . "http://sweetontology.net/stateStorm/"^^ . "^\\d+$"^^ . "eukaryotic" . . "0000008"^^ . _:N2bd152f97ac44757940d144d931894a5 "gary@sourceauditor.com" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human"^^ . . . . "ncithesaurus" . . "https://data.oncomx.org/OMX_"^^ . . "SWEET Ontology Phenomena Atmosphere Lightning" . "false"^^ . . "grouping" . . . "The COVID-19 epidemiology and monitoring ontology" . "A metadata model for Dublin Core metadata"^^ . "^sample_\\d{3}$"^^ . . . "soreao" . . "https://prefix.zazuko.com/prefix/$1:" . "^\\d+$"^^ . . . "identifier for species classified under the New Zealand Threat Classification System"^^ . . . . "development" . "MM00040"^^ . . . "fetus" . "https://www.checklistbank.org/dataset/"^^ . "Nematode Expression Pattern DataBase" . "Enzyme Nomenclature" . "https://fairsharing.org/$1"^^ . . "false"^^ . . "umls.mth" . "Text+ Collection" . "^\\d+$"^^ . "false"^^ . _:N7d9a8256b69e47bbb1c75c71b4ebb121 . . . . . "genewiki" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Capacity"^^ . . "LINCS_LDP" . . . . "https://www.ebi.ac.uk/interpro/entry/pfam/$1"^^ . . . "kyinno" . "Mathias Brochhausen" . . "false"^^ . . . . . . "ietf.language" . . . "300011154"^^ . "Glycan Naming and Subsumption Ontology" . "Damion Dooley" . . . "cido" . . . . . . "go.ref" . . . . . "false"^^ . "frederic.bastian@unil.ch" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Product"^^ . "https://cropontology.org/rdf/CO_345:$1"^^ . . . . "pubchem.assay" . . . . "obo" . . . "^PKDB[0-9]{5}$"^^ . "Chinese Biological Abstracts" . . "anatomy" . "https://cordis.europa.eu/project/id/$1"^^ . "BLL"^^ . . . . "https://inspire.ec.europa.eu/theme/$1"^^ . . . "434"^^ . . "sweet.realp" . "FooDB compound" . . "Binning"^^ . . "obo" . . . "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions"^^ . . "0000006"^^ . . "Biological Expression Language" . . "false"^^ . . "Minoru Kanehisa" . . "expressed sequence tag" . . . . "ASZ"^^ . "obo" . "units" . . . . "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . . "http://ratmap.org/Showgene.php?gene_stable_id=$1"^^ . "http://sweetontology.net/stateRealm/$1"^^ . . . . "0000003"^^ . . "identifier for an author on the Authorea writing service"^^ . . . . . . "mirna" . "false"^^ . . . . . "^[SED]R[APRSXZ]\\d+$"^^ . "biostudies" . "civic.variantgroup" . . "https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry?primaryAC="^^ . . . . . . "rna" . "life science" . . "false"^^ . . . "phenomena" . . . . "plant phenotypes and traits" . . . "cell biology" . "SWEETRealm" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Particle"^^ . "BibliographicRecord"^^ . "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions."^^ . "7dfd3f10-d410-45a4-983d-8fbd6dfbc374"^^ . "false"^^ . . . . . "This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties"^^ . "addexbio" . . "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#$1"^^ . . . . . "birnlex" . "exmo" . "0019030"^^ . . . . "scop.sid" . "https://genelab-data.ndc.nasa.gov/genelab/accession/$1"^^ . . . . . "^PPR\\d+$"^^ . . . "Mass spectrometry ontology" . . "http://www.gramene.org/db/protein/protein_search?protein_id="^^ . . "false"^^ . . . . "These are the terms that are improted for FOVT to describe vertebrate traits."^^ . . . . "ScerTF" . "biochemistry" . "Mathematical modeling ontology" . . . . _:N7852fe3f7a8b4c05a86670994e34ae06 "Natalie L Catlett" . "cell line" . . . . . . "evan@epatters.org" . "model organism database" . "00000443"^^ . . "16129"^^ . "biogrid" . . . . "disease phenotype" . "http://ascl.net/"^^ . . . . . . . . . . "The ALlele FREquency Database" . . "nfdi4cat" . "organic compound" . . . . "Counterclockwise"^^ . . . . "Software Heritage is the universal archive of software source code."^^ . "false"^^ . . . . . . _:Ne1875a74584f44699e0c64bef058741f "patricia.brooks2@cms.hhs.gov" . . . . . . . . . . "0001191"^^ . "0000011"^^ . . . . "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . "E13035"^^ . . . "false"^^ . "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies."^^ . "^HIP\\d{9}(\\.\\d+)?$"^^ . "genome" . . . "eggnog" . . . . . . "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." . . "^\\d+$"^^ . "structure" . . . "refseq" . . . . "Ontology for simulation, modelling, and optimization" . . . "ontology" . "https://www.alliancegenome.org/accession/"^^ . "false"^^ . . . "https://www.deciphergenomics.org/syndrome/$1"^^ . . . . "life sciences, biology" . "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E."^^ . "https://elsst.cessda.eu/id/3/"^^ . . . . "http://purl.org/iot/ontology/fiesta-iot#$1"^^ . "Zhi Xie" . "MOL000160"^^ . "gemet.relation" . . . "sorepsme" . "Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities."^^ . "false"^^ . . . . . "obo" . "Defunct vaccine information source from the He Lab"^^ . . "invertebrate" . . . "false"^^ . . . . "false"^^ . . "schema" . "false"^^ . . "^\\d{7}$"^^ . . "The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects."^^ . . . . "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications."^^ . . . . "sweet.phatmowm" . . "idomal" . . "mutant mouse strain" . . . . . "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id="^^ . "ListShape"^^ . _:N900a645280aa4ebcb3330169f959b61f . . . . "https://purl.archive.org/tfsco/TFSCO_$1"^^ . . . "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid="^^ . "sweet.reagoc" . "aspgd.protein" . . . . . "http://purl.org/dcx/lrmi-vocabs/educationalAudienceRole/$1"^^ . . . . . _:N26eaa5bbbcb045be8a5b8d5394f35eaa "NIH Reporter Helpdesk" . "biomedical science" . "KEGG Orthology" . . . . . "sorepdm" . . . . "https://vocabularies.cessda.eu/vocabulary/TimeZone?lang=en#code_"^^ . . . . "0000038"^^ . "REFSEQ_PROT" . . . "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"^^ . . . . "kegg.dgroup" . "disease" . . . . . . . "ConfIDent Event" . . . . . . "http://sweetontology.net/phenAtmo/$1"^^ . . "plant phenotypes and traits" . . "https://redoxibase.toulouse.inrae.fr/display_perox/view_perox/"^^ . . "phylogenetics" . "485991"^^ . . . "disease phenotype" . . "en-GB"^^ . "https://ngdc.cncb.ac.cn/genbase/search/gb/"^^ . "https://ecocyc.org/gene?id="^^ . "http://purl.obolibrary.org/obo/MAT_$1"^^ . . . "^\\d+$"^^ . . "oban" . "Digital Humanities" . "https://identifiers.org" . . "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1"^^ . "^\\d{7}$"^^ . "LCSCCPN"^^ . . . "Fission Yeast Experimental Conditions Ontology" . . "false"^^ . . . . . . "Amplitude"^^ . "david.wishart@ualberta.ca" . "false"^^ . . "pephub" . . "Dictyostelium discoideum phenotype ontology" . . "http://bio2rdf.org/affymetrix:$1"^^ . . . . "mgi" . "SWEET Ontology Phenomena Atmosphere Wind Mesoscale" . . . . . . "gold standard" . "Breccia"^^ . "false"^^ . "https://saref.etsi.org/saref4lift/$1"^^ . . "Christopher Baker" . . . . . . "http://rs.tdwg.org/dwcpw/"^^ . "prefer" . "atmosphere cloud" . "crop2ml" . "epilepsy" . "open educational resource" . "http://sweetontology.net/propBinary/$1"^^ . . . "genome" . . . "omics" . "https://nf.synapse.org/Explore/Tools/DetailsPage?resourceId=$1"^^ . . "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"^^ . "agriculture" . . "ddi.languageproficiency" . . "https://www.ebi.ac.uk/intact/search?query=$1"^^ . . "ATC_code" . . "false"^^ . "http://purl.org/biotop/biotop.owl#$1"^^ . . . "https://cropontology.org/rdf/CO_365:$1"^^ . . "http://sweetontology.net/reprDataService/$1"^^ . . . . . . . . "Genomic Data Commons Data Portal" . . . "identifier for a person, in the Loop database of researcher impact"^^ . . "Human BioMolecular Atlas Program Collection" . . . . "https://biokb.lcsb.uni.lu/fact/$1"^^ . . . . "engineering" . . "false"^^ . . . "false"^^ . . . "viaf" . . . "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"^^ . "true"^^ . . . . . . . . "http://sweetontology.net/propCapacity/"^^ . "domain" . "R. Burke Squires" . . "biolegend" . . . . . "Zebrafish Phenotype Ontology" . . "sophen" . "phenomena" . . . . . . . . "http://www.fairsharing.org/ontology/domain/DRAO_$1"^^ . . "orthologous" . . . "dbamp" . . . "https://data.chembiosys.de/assays/"^^ . . "TC" . . . "taxonomy" . . . . "false"^^ . "biodiversity" . "The Key Performance Indicator module aims to model the metrics defined at the beginning of building renovation activities to monitor the conformance with typical requirements related to energy efficient buildings."^^ . "https://gpo.ontology.link/GPO_$1"^^ . . . . . . "^[0-9]+\\.[0-9]+$"^^ . . . "psdo" . . . . . "Population and Community Ontology" . . . . "false"^^ . . . "proteomics" . . "21157"^^ . . . "Human Induced Pluripotent Stem Cells Initiative" . . . . . . . . . . . . . . . . "^\\d{7}$"^^ . . "transgenic" . "life science" . . . . . . "false"^^ . "fao.asfis" . "ChemicalCompound"^^ . "Mouse adult gross anatomy" . . . "http://cellimagelibrary.org/images/"^^ . . . "http://data.crossref.org/fundingdata/funder/10.13039/$1"^^ . "agriculture" . "https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno=$1"^^ . "false"^^ . . "http://w3id.org/nkos/"^^ . . . "drug" . . . "false"^^ . . . "^[SCTAGMNUIX]{1,2}\\d{2}\\.([AB]\\d{2}|\\d{3})$"^^ . _:N1f41a041529148678b06b28da2b4de20 "cs@firstdatabank.com" . . . . . . "UMKS"^^ . . "http://www.obofoundry.org/" . . . . . "sfukuchi@maebashi-it.ac.jp" . . "Willy Wong" . . "HUMAN0000789"^^ . . "^\\d+$"^^ . "sweet.realt" . "https://biopragmatics.github.io/providers/diseaseclass/"^^ . "unite" . . "life science" . . . . . . "https://bioregistry.io/combine.specifications:"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy"^^ . "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_"^^ . . . . . . "uberon.issue" . . "Rfam database of RNA families" . . "true"^^ . . . . . . "The Cell Cycle DB" . . . "https://www.ebi.ac.uk/biostudies/studies/"^^ . "^\\d+$"^^ . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/rexdatatype?lang=en#code_"^^ . _:N0e0ba6da09004f40b9016a291ba248d9 "info@who.int" . "ontology" . . . . . . "ndr@ebi.ac.uk" . . "instrument" . . "^\\d{7}$"^^ . . "lincs.protein" . . "protein" . . . . . . "BirdBase" . . . . "SWEET Ontology Representation Time Season" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Chemical"^^ . . "^[a-zA-Z]+-[a-zA-Z0-9()]+(-[a-zA-Z0-9]*)?$"^^ . . . _:N5a1da31ab22f4870b69675945b3bd40b "J.Bard@ed.ac.uk" . "Ryuichiro Nakato" . . . "http://www.bootstrep.eu/ontology/GRO#"^^ . . . . . . "phenomics" . . "bibliography" . "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1"^^ . "With the growing number of available genomes, the need for an environment to support effective comparative analysis increases. The original SEED Project was started in 2003 by the [Fellowship for Interpretation of Genomes (FIG)](http://thefig.info/) as a largely unfunded open source effort. Argonne National Laboratory and the University of Chicago joined the project, and now much of the activity occurs at those two institutions (as well as the University of Illinois at Urbana-Champaign, Hope college, San Diego State University, the Burnham Institute and a number of other institutions). The cooperative effort focuses on the development of the comparative genomics environment called the SEED and, more importantly, on the development of curated genomic data.\nThis prefix provides identifiers for molecular roles that describe the function of one or more proteins in microbes and plants."^^ . . . . . "biomedical science" . "evidence" . "pancreatic development" . . "false"^^ . . "^[A-Z]C\\d{1,3}$"^^ . . "^[\\w\\-:,]{3,64}$"^^ . "http://cgsc.biology.yale.edu/Site.php?ID=$1"^^ . "MGnify Protein" . "antibodies" . . . . . "https://catalog.hathitrust.org/Record/$1"^^ . . "ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics."^^ . . "https://www.geonames.org/recent-changes/featurecode/$1/"^^ . "false"^^ . "lrmi.interact" . "https://www.ebi.ac.uk/metagenomics/genomes/"^^ . . "http://sweetontology.net/phenGeolSeismicity/$1"^^ . "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States."^^ . . . "https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/$1"^^ . . . . . "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$"^^ . . . . . . . "false"^^ . . "classification-model"^^ . . "http://sweetontology.net/phenAtmoFront/$1"^^ . . . "^\\d+$"^^ . . . "http://rs.tdwg.org/dwcem/"^^ . . "Jade Hotchkiss" . "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."^^ . . "^\\d{8}$"^^ . . . . . "educational resources" . "false"^^ . "sophec" . . "https://www.findacode.com/code.php?set=ICD10PCS&c=$1"^^ . . "nfdi4ing" . . . . "SWEET Ontology Realm Ocean Floor" . "http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"^^ . . . . "false"^^ . "icd11.foundation" . . . "genomics" . . "sargon" . . . "Megan S. Kane" . "yuki.yamagata@riken.jp" . "https://cropontology.org/rdf/CO_337:"^^ . . "obo" . . . "^\\d+$"^^ . . . "knowledge and information systems" . . "dorloff@ncmir.ucsd.edu" . . "https://saref.etsi.org/saref4agri/"^^ . . . . . "Alan Bridge" . . . "An EMMO-based domain ontology for atomistic and electronic modelling."^^ . "nfdi4energy" . . . "UNESCO Thesaurus" . . "http://id.nlm.nih.gov/mesh/vocab#"^^ . . . "true"^^ . . . "EC number" . . . "reactions" . . "https://www.inaturalist.org/observations/$1"^^ . . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene."^^ . . "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information."^^ . . "chemistry" . "agriculture" . . . "^\\d+$"^^ . "Brassica ontology" . . "food" . . "^\\d+$"^^ . "false"^^ . "http://elm.eu.org/elms/elmPages/$1.html"^^ . . "study design" . . "Stefan Günther" . "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Locus"^^ . "false"^^ . . . "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Microbiota"^^ . . "biomedical science" . . "life science" . "false"^^ . "molecular microbiology" . "asrp" . . "iedb.receptor" . "ontology" . . "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules."^^ . "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id="^^ . . "agrovoc" . . "http://purl.obolibrary.org/obo/OBCS_"^^ . . "true"^^ . "rnakato@iqb.u-tokyo.ac.jp" . . "protein" . "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1"^^ . . "CDBG00009781"^^ . "go.chemicals" . "malaria" . . "DateTime"^^ . . . . . "AcknowledgementCondition"^^ . "PGOHUM00000289843"^^ . "nfdi4energy" . . "InfoSecSoS Ontology" . "false"^^ . "binding site" . "http://purl.obolibrary.org/obo/OHPI_"^^ . "false"^^ . . . . . . . . . . . . . . "protein" . "false"^^ . "false"^^ . . "1801.012"^^ . . "Xuetong Zhao" . "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products."^^ . "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution."^^ . . . . . . . "03212fd7_abfd_4828_9c8e_62c293052d4b"^^ . . . . "Allotrope Merged Ontology Suite"^^ . . "^[A-Z]+[A-Z-0-9]{2,}$"^^ . "tRNA Gene Database" . "RXCUI" . "https://www.enzolifesciences.com/$1"^^ . "chemistry" . . . "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession="^^ . "obo" . "engineering" . . . "genome" . "VectorBase is part of the VEuPathDB, a NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens and related species of interest. Currently, VectorBase contains genome information for approximately 80 organisms: mosquitoes, bed bugs, biting midges, ticks, tsetse flies, mites, sand flies, house flies, body lice, stable flies, kissing bugs, and a snail which is an intermediate host."^^ . . "obo" . "plant" . . . . . . "phenotype" . "false"^^ . . "deepak.unni3@gmail.com" . . . . "iceberg.element" . . . . . "Michel Dumontier" . "Molecular Interaction Database" . "0000215"^^ . "computer science" . "biocuration" . "00005643"^^ . . . "http://purl.obolibrary.org/obo/EXMO_"^^ . "AKR-270"^^ . . . . "https://cropontology.org/rdf/CO_334:"^^ . . "false"^^ . . . "data management" . "https://nanbyodata.jp/disease/NANDO:"^^ . . . . . . "https://permalink.obvsg.at/"^^ . . "^K\\d+$"^^ . "tib" . "^\\d+$"^^ . "European Registry of Materials" . . "OncoMX is a knowledgebase for exploring cancer biomarkers in the context of related cancer and healthy data. This resource is for datasets within OncoMX."^^ . "sweet.stsy" . . "TotalUniverseCompleteEnumeration"^^ . . . "false"^^ . "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^ . _:N1a2a7fdbe86048f6add6cae4bc64e9f2 . . "balhoff@renci.org" . "Models developed with the Virtual Cell (VCell) software prorgam."^^ . . "A Database of Human Hemoglobin Variants and Thalassemias" . . "dna" . . . . . . "6000122"^^ . "false"^^ . . . . . . "interaction" . . . . . . "beetlebase" . . . . . "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"^^ . . "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality."^^ . . . . "^\\d+$"^^ . . . "Conservation"^^ . . . . . "http://www.conoserver.org/?page=card&table=protein&id=$1"^^ . . . . . . "https://data.chembiosys.de/tags/$1"^^ . "ess" . . "0001410"^^ . . "GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group."^^ . "^[-A-Za-z0-9\\_]*$"^^ . . "educational science" . . "genatlas" . . . . . . "emi" . "genetics" . . "^\\d{7}$"^^ . "morbidity" . . . . "UniProt Keywords" . "cooperl@oregonstate.edu" . . . . . "https://go.drugbank.com/indications/$1"^^ . "gdo" . . . "medicine" . . . . . "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1"^^ . . "An ontology of physico-chemical methods and properties."^^ . . . "false"^^ . "Jacqueline.Campbell@usda.gov" . . . . "nfdi4ing" . "https://bioregistry.io/n2t:"^^ . "Zazuko Prefix Server" . . . . "false"^^ . "^\\d+$"^^ . "Matthias König" . . . . "ABL1"^^ . "false"^^ . . . "Kidney and Urinary Pathway Ontology" . "Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties."^^ . . . . "002804"^^ . . . _:N0d2d6757a8704aac8cfc82d2d2bac493 "heinrich.herre@imise.uni-leipzig.de" . . . "Carissa Park" . "false"^^ . . . "confident.event" . . "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80"^^ . . "true"^^ . . "^[a-z_A-Z0-9]+(\\[[c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y]\\])?$"^^ . . . . . "https://www.ebi.ac.uk/arrayexpress/experiments/$1"^^ . "https://cropontology.org/rdf/CO_340:$1"^^ . "SECONDARY_CAS_RN" . . . . . "oid" . "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . . "Zach Landis-Lewis" . "^\\S+$"^^ . . . . . "ontology" . . . . . . . . . "http://www.ifomis.org/bfo/1.1/snap#$1"^^ . . . "true"^^ . "small molecule" . . "An ontology representing the gross anatomy of Drosophila melanogaster."^^ . . . "Beilstein" . "gaoj@mskcc.org" . "false"^^ . "An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date."^^ . "https://proteinensemble.org/$1"^^ . . "This vocabulary holds the definitions and descriptions of the collections included in the CESSDA Data Catalogue."^^ . . . . . . . . "kestrelo" . "hsa_ribocircSCD_001"^^ . "^\\d+$"^^ . . "^\\d+$"^^ . . . "classification" . . "CB82546919"^^ . . "The COnCEPT upper-level Design Ontology (COnDO)."^^ . . . "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"^^ . . "shuichi@hgc.jp" . . . . . "false"^^ . . . . . "http://purl.obolibrary.org/obo/AEO_"^^ . "0005250"^^ . . "http://vocab.nerc.ac.uk/collection/P07/current/"^^ . "plant biomass" . . . . "Austrian Fields of Science and Technology Classification" . . . "Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces."^^ . . . . "Nicolas Le Novère" . . . . . . . . . "http://purl.obolibrary.org/obo/OOSTT_"^^ . . "Data types in R|EX research" . "AbductionOrForcedDisappearance"^^ . . . "perkinelmer" . "pathway" . . "false"^^ . . . . "gesis.rexgroups" . "https://nf.synapse.org/Explore/Tools/DetailsPage?resourceId="^^ . . . . . . . . . . . "ligandexpo" . "topalis@imbb.forth.gr" . . . . . "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences."^^ . . . "agro" . . "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1"^^ . . "http://www.vbase2.org/vgene.php?id=$1"^^ . . . . "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Hydrosphere"^^ . . "life science" . "Identifiers for immune receptors, representing receptor complexes or groups studied for their interactions with antigens or epitopes."^^ . . . "UM-BBD_ruleID" . . "human" . "^\\d+$"^^ . "Tom Gillespie" . . . "^M[0-9]{4,}$"^^ . . . . "^MAR\\d{5}$"^^ . . "development" . "https://www.iedb.org/epitope/$1"^^ . . . . . . . . . . "buccal_gland"^^ . . . . . . . "health science" . "BioDolphin" . . "Software ontology" . . . . . . . . "http://purl.obolibrary.org/obo/FYPO_$1"^^ . "expression data" . . "0000123"^^ . "andreas.ruepp@helmholtz-muenchen.de" . "preclinical studies" . . "false"^^ . "http://www.ymdb.ca/compounds/"^^ . . . . "Datanator Metabolite" . "Katy Börner" . . . "Integrated Resource for Domestic Dog" . . . "me@harshp.com" . . "FuncBase Fly" . "Interview"^^ . "Indian Crop Phenome Database Project" . . . . . . . "mutant strain" . . . . . . . . . . . "experimental measurement" . . . . "^\\d+$"^^ . "slso" . . . . . . . . "Núria Queralt Rosinach" . . "1011.00"^^ . "life cycle stage" . "Animation"^^ . . "^\\d{4}-\\d+-\\d+-\\d+$"^^ . . "pathway" . . . . . "SWEET Ontology Material Rock Igneous" . "An ontology for non-coding RNA, both of biological origin, and engineered."^^ . "false"^^ . . . "Jian Huang" . . . . . "w3c rec" . "Insertion sequence elements database" . _:N410c642aad994bbab67fc34f91c6cddc "cellsemantics@gmail.com" . "aggregated-data"^^ . "https://molmedb.upol.cz/mol/"^^ . "Predicates that are used to construct the GESIS Knowledge Graph, a bibliometrics KG."^^ . . . "Alvis Brazma" . . . . . "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families."^^ . "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms."^^ . . "state thermodynamic" . . "agriculture" . . . . . . "Malachi Griffith" . . "lrmi.eduse" . "SPARQL 1.1 Service Description" . "genome" . "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver."^^ . "GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release)."^^ . "genome" . "organ" . . . . . . "DFG Classification of Subject Areas Ontology - 2020-2024" . . "hubmap.collection" . "2.7.1.1"^^ . "tissue" . "^[A-Z0-9]+$"^^ . . . . . "false"^^ . . . "http://www.kegg.jp/entry/$1"^^ . "LiceBase" . "false"^^ . . . . . "https://search.clinicalgenome.org/CCID:"^^ . "WBGene00000001"^^ . . "true"^^ . . . . . . "^\\d+$"^^ . . . . . "Proteomics data and process provenance" . . . . "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1"^^ . . "medicine" . . . . . . "reto" . "false"^^ . . . . "physics" . . "WikiPathways GPML Vocabulary" . . . "https://foodb.ca/foods/"^^ . . "^c\\d+$"^^ . . . "structure" . "projects_to"^^ . . . . . . . . . . . "false"^^ . . . . "http://rs.tdwg.org/dwc/terms/"^^ . . "LinJ.20.0070"^^ . . . . "hubmap.dataset" . . . "https://www.gbif.org/species/$1"^^ . "^[AEP]-\\w{4}-\\d+$"^^ . "economics" . . "Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]"^^ . . . "InstructionalPattern"^^ . . "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research."^^ . "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded."^^ . . "^NRFC\\d+$"^^ . . "CABI Digital Library" . . "false"^^ . "0000319"^^ . . "pharmacology" . "ilkou@l3s.de" . . . "obo" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Industrial"^^ . . "botany" . . "ontology" . "false"^^ . . . . "https://glycopost.glycosmos.org/entry/$1"^^ . "An ontology of phenotypes covering microbes"^^ . "VHOG_RETIRED" . . "snodb" . . . "PharmGKB Drug" . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/TopicClassification?lang=en#code_"^^ . . . . "^\\d{7}$"^^ . . "https://signor.uniroma2.it/relation_result.php?id="^^ . "centrally registered identifier" . . . "false"^^ . "ecology" . . "MJoachimiak@lbl.gov" . "structural bioinformatcs" . . . . . . "^\\d{7}$"^^ . "https://cellmodelpassports.sanger.ac.uk/passports/$1"^^ . "Publons Researcher" . . "Epilepsy Ontology" . "longevity" . "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)."^^ . . . . . . . . . . . . "pactr" . "phismith@buffalo.edu" . "BaseFlow"^^ . "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump"^^ . . "Core Ontology for Biology and Biomedicine" . . "phenomena" . "AreaIntegral"^^ . . . . . "Accuracy"^^ . . "Name-to-Thing" . "sequence" . . "genomics" . "http://web.resource.org/cc/$1"^^ . . . . "https://glytoucan.org/Structures/Glycans/$1"^^ . "cordis.project" . "sweet.maf" . . . . . "^[a-z0-9\\-_]+$"^^ . . . . . . . . "anatomy" . "systems biology" . "Mike Tyers" . . . "rism" . . "preprints" . "https://w3id.org/bervo/BERVO_$1"^^ . "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid="^^ . . . . . . . "49"^^ . "molecular biology" . . . "67"^^ . . . "SWEET Ontology Realm Earth Reference" . "^bt\\d+$"^^ . . . "false"^^ . "00000101"^^ . . "The World-2DPAGE database" . . . "https://www.dpvweb.net/dpv/showdpv/?dpvno="^^ . . . . . . "ab275461"^^ . . "nif.cell" . "ontology" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Coordinate"^^ . . . "UniProt" . . . "hpscreg" . . . . . . "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]"^^ . . . . . "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features."^^ . . . . . . . . . "philippe.rocca-serra@oerc.ox.ac.uk" . "https://w3id.org/hpont#"^^ . . "zbw.stw" . "false"^^ . "https://www.authenticus.pt/$1"^^ . . . "ceds.learning_resource_type" . . "drao" . . "Darren Natale" . "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . "ontology" . "natural science" . "nfdi4chem" . "https://www.proteomicsdb.org/#human/proteinDetails/"^^ . . . . "catalogs" . . "seo" . . . "medical informatics" . "Xenbase" . "ecyano.model" . "cell" . . . . . "ontology" . "Ecological terms"^^ . "false"^^ . . . "molecular interaction" . . "BioContext contains modular JSON-LD contexts for bioinformatics data." . . . "gene group" . "false"^^ . "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant."^^ . . . . . . "PWY-1042"^^ . . . . "behavior" . . "ocean dynamics" . "subject agnostic" . . . "26753"^^ . . . . . . . "SWEET Ontology Property Energy Flux" . . "http://europepmc.org/articles/"^^ . "aio" . "BTO" . "http://phenol-explorer.eu/foods/"^^ . "false"^^ . "ICD11" . "biobank" . "ChemBioSys Organism" . . . "NIST" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Floor"^^ . "msig" . . . . . "dictyBase Expressed Sequence Tag" . "admin@envipath.org" . . . "^[1-9][0-9]{14}$"^^ . "proteomics" . . . . "protclustdb" . . . . "iot" . "Hypertension Ontology" . . . "Swiss Personalized Health Network Schema" . "https://embryology.med.unsw.edu.au/embryology/index.php/Carnegie_Stages#Stage_"^^ . . "Cathy Wu" . . . . . "realm" . . "realm" . . "false"^^ . "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."^^ . "false"^^ . . . . . "ncats.drug" . "Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)"^^ . . "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information."^^ . . . "prgr_human"^^ . "gitlab" . . . . . . . . . "pmr.exposure" . . . "false"^^ . "This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain"^^ . . "https://schema.coypu.org/global#$1"^^ . . "https://www.geonames.org/$1"^^ . . "[KonsortSWD (Strengthen, Widen, Deepen)](https://www.nfdi.de/consortia-konsortswd) is the German National Data Infrastructure (NFDI) consortium for social, educational, behavioral, and economic sciences. This collection reflects the prefixes collected by NFDI Section Metadata for ontologies and controlled vocabularies used by members of the consortium." . . . . . . "Histopathology Ontology" . . . . . "SWEET Ontology Property Mass" . . "Rat Genome Database" . "nlm.publisher" . "https://herv.img.cas.cz/s/"^^ . . . "genotyping" . . . . "http://hogenom.univ-lyon1.fr/query_sequence?Go=Submit+Query&seq=$1"^^ . . . "data analysis" . "EDCC Taxonomy contains the terms that are used to classify citizens' requests to the Europe Direct Contact Centre (EDCC). EDCC Taxonomy is maintained by the Directorate-General for Communication of the European Commission and published by the Publications Office of the European Union on the EU Vocabularies website."^^ . "http://purl.obolibrary.org/obo/LIPRO_"^^ . . . . "SNOWMEDCT" . . "http://sweetontology.net/reprSpaceGeometry/"^^ . . "fraction" . "nbo" . . . . . . . "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function."^^ . . . . "http://dictybase.org/gene/"^^ . . . . . . . . . . . . . "KGR1"^^ . . "false"^^ . . "imanis" . . . "tib" . "Database of Arabidopsis Transcription Factors" . . "https://flybase.org/reports/FBtc"^^ . "assesses"^^ . "dna" . . . . "engineering" . "false"^^ . "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false®expr=off"^^ . . . . . . . . "false"^^ . . . . . "pfr" . . . "life sciences, biology" . . "Drosophila development" . . . "subject agnostic" . "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID="^^ . . . . "^\\w{1,2}\\d{8,10}$"^^ . . . "http://purl.obolibrary.org/obo/CDAO_$1"^^ . . . . "http://sweetontology.net/phenSystem/$1"^^ . "true"^^ . . . . . . "grid.225360.0"^^ . . . . . . . "Open Biological and Biomedical Ontologies" . . "subject agnostic" . . "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms."^^ . "false"^^ . "ARCBedrest"^^ . "GDS1234"^^ . "System Science of Biological Dynamics dataset" . "PubChem_Compound_CID" . "dragondb.dna" . "food" . . . "Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank."^^ . . . . "true"^^ . "mKIAA4200"^^ . . "sweet.phb" . . . "ontology" . . . . . . . . "^\\d+$"^^ . "COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer"^^ . "https://graphics.endlessforms.info/element?id=$1"^^ . . . . . . . "Alzforum_mut" . . "false"^^ . . "false"^^ . . "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes."^^ . "PMID" . . . . "nfdi4energy" . "https://www.e-cyanobacterium.org/bcs/entity/$1"^^ . "Stemcell Knowledge and Information Portal" . . . . . . "false"^^ . . . . . "SCancerRNA" . . . . . "MaizeGDB is the maize research community's central repository for genetics and genomics information."^^ . "^\\d+$"^^ . . . . . . . . "realm" . . "fdd000613"^^ . . . . "ontology" . . . . "http://purl.obolibrary.org/obo/SO_$1"^^ . . . . . "pmr" . . "life science" . . "protonet.proteincard" . "https://vocabularies.cessda.eu/vocabulary/ContributorRole?lang=en#code_"^^ . . . . . "fid baudigital" . "The Pan African Clinical Trials Registry (PACTR) is a regional register of clinical trials conducted in Africa. The registry is an African initiative serving the needs of Africans. It provides an open-access platform where clinical trials can be registered free of charge. The PACTR aims to increase clinical trial registration in Africa by developing awareness of the need to register trials and supporting trialists during registration. (from homepage)"^^ . . . . . "nsrrc" . "ACC-1"^^ . "http://www.pharmgkb.org/gene/$1"^^ . . "http://sweetontology.net/matrElementalMolecule/$1"^^ . . . "https://www.iedb.org/mhc/"^^ . . . . . . "sweet.stf" . "http://edamontology.org/data_$1"^^ . "http://www.wikidata.org/entity/$1"^^ . "EasyChair Call for Paper" . "^IID\\d+$"^^ . "m.a.laporte@cgiar.org" . . . . . . . " Philip Strömert" . . . . . . "Application ontology for entities related to insecticide resistance in mosquitos"^^ . . "https://www.arabidopsis.org/protein?key="^^ . . . . "genecards" . . . . "The Semantic Resource Types Vocabulary was created for NSF's EarthCube Program's Resource Repository. Includes entries for things like 'thesaurus', 'ontology', 'controlled vocabulary', 'taxonomy'."^^ . "Cell Signaling Technology Antibody" . . "Literature references in Gramene"^^ . "86"^^ . "false"^^ . . "The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence."^^ . . . "reaction" . "industry" . . "https://cstr.cn/$1"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Model"^^ . "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species."^^ . "somais" . "bioinformatics" . . "0000138"^^ . . . . . . . "ess" . . . "http://clipserve.clip.ubc.ca/topfind/proteins/$1"^^ . . "^\\d{7}$"^^ . "asin" . . . . . . . . . . . "false"^^ . . "true"^^ . . "https://bioregistry.io/bacmap.map:"^^ . . . . "sweet.phatmo" . "classification" . . "Sustainable Development Goals Interface Ontology" . "Minimum PDDI Information Ontology" . . "false"^^ . . . . . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid="^^ . "https://portal.hubmapconsortium.org/browse/collection/"^^ . "druzinsk@uic.edu" . . . "life cycle stage" . "Registry of Toxic Effects of Chemical Substances" . . "Flora Phenotype Ontology" . . "obo" . "sabiork.ec" . . "M3G stands for “Metadata Management and distribution system for Multiple GNSS Networks”. M3G allows to upload, validate, and distribute GNSS station metadata such as IGS-style site logs, information about local networks, DOIs, nominal data provision, data licenses attached to the daily RINEX data, etc..."^^ . . . . . "Encyclopedia of DNA Elements" . "false"^^ . . . "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets."^^ . "0278"^^ . "AB016785"^^ . . "Mouse pathology ontology" . . "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM="^^ . . . . . "epigenomics" . . "^\\w{2,4}\\d{5}$"^^ . . "pig" . . "nfdi4chem" . . . . . "http://igsn.org/$1"^^ . "https://id.loc.gov/authorities/$1"^^ . . . . . . . "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present."^^ . . . "iot" . "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . . "false"^^ . "depod@embl.de" . . "http://sweetontology.net/propBinary/"^^ . . . "learning material" . . . . "biomedical science" . . "false"^^ . "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . . "http://sweetontology.net/phenOcean/$1"^^ . . "tiago.lubiana.alves@usp.br" . . . . . . "http://sweetontology.net/matrAnimal/"^^ . "http://sweetontology.net/stateTimeCycle/"^^ . . "https://bioregistry.io/smiles:"^^ . "false"^^ . . . . "false"^^ . "General Multilingual Environmental Thesaurus Theme" . "geochemistry" . . "false"^^ . . "ontology" . "mamo" . . . "iso.639-3" . . . . "sweet.phgt" . . . "http://purl.obolibrary.org/obo/OHMI_"^^ . . . . . "biomedical science" . "false"^^ . "G00123"^^ . . "A metadata stadnard to model data science training materials. Later, was replaced by Bioschemas' [training materials specification](http://bioschemas.org/specifications/TrainingMaterial/specification/)."^^ . . . . . . "woc.ontology" . "ontology" . . "http://www.fao.org/gsfaonline/additives/details.html?id=$1"^^ . . . "human" . . . "ontology" . . "materials" . "http://worfdb.dfci.harvard.edu/html/index.php?search_type=name&page=showresultrc&race_query=$1"^^ . . . "^\\d{7}$"^^ . . "SP_DI" . "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . . "sbo" . . . . "MGnify Sample" . "http://www.w3.org/2003/g/data-view#"^^ . "http://purl.obolibrary.org/obo/CTO_"^^ . "pathway" . "^OENC\\d+$"^^ . . "genetics" . . . . . . "^.+$"^^ . "genecards.geneloc" . "microbe-host interaction phenotype" . . . "agriculture" . "neurophysiology" . . . . . . "https://www.jax.org/strain/"^^ . "http://uri.neuinfo.org/nif/nifstd/nlx_func_$1"^^ . "The AlzGene database provides a comprehensive, unbiased and regularly updated field synopsis of genetic association studies performed in Alzheimer’s disease. In addition, hundreds of up-to-date meta-analyses are available for all eligible polymorphisms with sufficient data."^^ . . . . . . "false"^^ . . . "http://purl.unep.org/sdg/SDGIO_$1"^^ . "CanBeApproximated"^^ . . . . "mwo" . . . . . "Integrated Taxonomic Information System" . . . . . . "labo" . "Jennifer C. Giron" . . . "obo" . . . "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data"^^ . . . "coypu" . . . . "http://eurovoc.europa.eu/$1"^^ . . . "gallont" . . "https://licebase.org/?q="^^ . . . "PROV Namespace" . . "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_"^^ . "go-term enrichment data" . . "ontology" . . "false"^^ . "FID BAUdigital Subject Headings" . "NLX" . . "cazy" . . . . . . . "soybase" . . . . . . "evorao" . . . "AngularCoordinate"^^ . "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . . "61"^^ . . "https://aopwiki.org/stressors/"^^ . . . . "Abatement"^^ . . . . . . . "other subjects" . . "112517"^^ . . . "DALIA Community" . "transcriptomics" . "Ontology of units of Measure" . "genome" . . "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins."^^ . . . . . "geographic location" . . . . "https://bioregistry.io/vdrc:"^^ . . . "orientation"^^ . . "SWEET Ontology Realm Land Glacial" . . "structure" . . "https://www.ribocentre.org/docs/$1"^^ . "http://database.deepsolar.space:18080/dbs/nlfff/"^^ . . "https://packagist.org/packages/$1"^^ . "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1"^^ . . "0000000"^^ . "sweet.phwn" . "https://bioregistry.io/cncb.gwh:"^^ . . "ISRCTN10175490"^^ . . . . "https://id.loc.gov/vocabulary/languages/"^^ . . . . "cpga" . . "00000011-a"^^ . . . "communication science" . . "ontology" . "^\\d{8}$"^^ . . "ontology" . . . . "A0118748"^^ . . "https://pharmacodb.ca/cell_lines/$1"^^ . . "DarcyFlux"^^ . . . "^\\w+$"^^ . . "Identifiers.org Ontology"^^ . "engineering" . . . . "https://images.endlessforms.info/image/"^^ . "Cell line databases/resources"^^ . "gene" . . . . "literature curation" . "https://cropontology.org/rdf/CO_367:$1"^^ . . . "obo" . "nfdi4energy" . . . "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-"^^ . . "functional genomics" . . "nfdi4energy" . . . . . . "Sandra Orchard" . "data management" . . "nfdi4ing" . . . . . "the European Hepatitis C Virus Database (euHCVdb, euhcvdb.lyon.inserm.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses."^^ . "igsr" . . . . . . . . . . . "hescriva@obs-banyuls.fr" . . . "http://terminology.hl7.org/CodeSystem/v2-"^^ . . . _:Nfeb2b0e7174d4203b88459c358035a08 "Stephen Larson" . . "obo" . "http://www.w3.org/2003/01/geo/wgs84_pos#"^^ . . "https://www.wormbase.org/species/c_elegans/rnai/"^^ . . "European Science Vocabulary (EuroSciVoc) is the taxonomy of fields of science based on OECD's 2015 Frascati Manual taxonomy. It was extended with fields of science categories extracted from CORDIS content through a semi-automatic process developed with Natural Language Processing (NLP) techniques. (from homepage)"^^ . "false"^^ . . "Objects of this class contain a self-bound collection of mass bearing particles."^^ . . . . . "NIH HIV Reagent Program" . . "jeetvora@email.gwu.edu" . "http://sweetontology.net/phenWave/"^^ . "^\\d+$"^^ . . "ontology" . . "rna" . . . . . "false"^^ . "KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships."^^ . "false"^^ . "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."^^ . . . "http://sweetontology.net/reprDataServiceAnalysis/"^^ . . . . "ontology" . . . "dclunie@dclunie.com" . "false"^^ . "https://bioregistry.io/diseasesdb:"^^ . . "The aim of DALIA project is to build a platform for learning material for Research Data Management (RDM) and Data Science. The platform is based on a knowledge graph. We introduce MoDalia, the base ontology of DALIA knowledge graph. Modalia inherits some modules from EduCOR. It includes also modelling of micro -credentials and certificates"^^ . "computer science" . "^[A-Za-z0-9]+$"^^ . "https://run.biosimulations.org/simulations/"^^ . "computational biology" . "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1"^^ . . "ligandbook" . . . "UMLS Semantic Types Ontology" . . "mod" . _:N6a7028aec9ae4189bbe053d3d8a22017 "Takeya Kasukawa" . . . . . "http://purl.obolibrary.org/obo/OARCS_$1"^^ . . . . "KEGG DRUG" . . "Complex Portal" . . . . "DASHR expression" . "false"^^ . "sorepmst" . . . . "Vertebrate skeletal anatomy ontology."^^ . . . . . . "false"^^ . . . "http://www.arachnoserver.org/toxincard.html?id=$1"^^ . . "lrmi.alignmenttype" . "phenotype" . "C138986"^^ . "true"^^ . "ontology" . "UniProt Resource" . . . "^(G|P|U|C|S)\\d{5}$"^^ . . . . . . . "metlin" . . "Indications and other conditions in drugbank"^^ . "An application ontology designed to annotate next-generation sequencing experiments performed on RNA."^^ . . "CHEMBL465070"^^ . . . . "sostb" . . "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM."^^ . "^\\d+$"^^ . "false"^^ . . "KEGG" . . . "NCBI_gi" . "genomics" . . "proteomics" . "development" . "https://w3id.org/oc/meta/"^^ . "Agent"^^ . . . . "false"^^ . "Tribolium Genome Database -- Insertion" . . . . . . . "https://registry.identifiers.org/registry/$1"^^ . "genome" . "pathway" . "metabolomics" . . "ontology" . . "false"^^ . . "Japan Consortium for Glycobiology and Glycotechnology Database" . "spar" . "Hui Wu" . "SWEET Ontology Phenomena Atmosphere Transport" . . . "https://www.addexbio.com/productdetail?pid=$1"^^ . . . . . "https://civicdb.org/links/drugs/"^^ . "biocompute" . . . . "Liver Cancer Model Repository" . . . . . "go.model" . . . "euroscivoc" . "pina" . . . . . "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No="^^ . . . "ontology" . . . "^\\d{7}$"^^ . "teddy" . . . "https://www.novusbio.com/products/$1"^^ . . . "http://purl.obolibrary.org/obo/SYMP_$1"^^ . "https://dialnet.unirioja.es/servlet/revista?codigo="^^ . . "life science" . "phenotype" . "semantic web" . "false"^^ . "bcrc" . "state system" . "geologic oceanic" . . "hilmar.lapp@duke.edu" . . . . "Functional Mock-up Interface Ontology" . . . . . . "quality" . . . "openwemi" . . . . . "regulation" . "Virus-HostDB" . "Georgeta Bordea" . . . "https://ensaiosclinicos.gov.br/rg/$1"^^ . . . . "Prefixes for ontologies relevant for the NFDI4Ing" . . . "fair data spaces" . "false"^^ . . . _:N8518272acb7a49aeac4319af83c4e81a . "Helen Berman" . . "dcid" . . "Reagent Ontology" . . . "gesis.rexconcepts" . . . . . "Scholia Registry" . . . . "Ontology about C. elegans and other nematode phenotypes"^^ . "NX_O00165"^^ . . . "digital planning and construction" . "microbiology" . "society" . "ev" . "false"^^ . "http://purl.obolibrary.org/obo/ECO_"^^ . . . "GenBank" . "http://purl.obolibrary.org/obo/EMAPA_$1"^^ . . "^MSMEG\\w+$"^^ . . . "false"^^ . . "https://hdl.handle.net/hdl:20.500.12582/"^^ . . . "developmental biology" . . . . "false"^^ . . . "false"^^ . . "false"^^ . "Pathguide" . . . "http://rdfs.org/sioc/ns#"^^ . . . . . . . "digital planning and construction" . . "A type for entries in the Bioregistry's metaregistry." . . "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA."^^ . . . "Online Computer Library Center WorldCat" . . "false"^^ . . _:Ne1875a74584f44699e0c64bef058741f . . "http://w3id.org/nkos/$1"^^ . "Identifiers for epitopes, which are the specific parts of antigens recognized by the immune system."^^ . "transcriptomics" . . . "ontology" . "^\\w+$"^^ . "https://www.re3data.org" . "0C1F-DA6C-4B02"^^ . . . "^\\d{7}$"^^ . . . . "empiar" . "st00576"^^ . "rnaloops" . . . . "https://dialnet.unirioja.es/servlet/autor?codigo="^^ . . . . . "Dan Berrios" . "xenopus" . "drug name" . . . . "rna" . . . . . . . "huanglin36@mail.sysu.edu.cn" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Law"^^ . . . . "inhibitors" . "https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/"^^ . . "NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins."^^ . . . . "false"^^ . . . "http://purl.org/obo/owlEOL_"^^ . "http://purl.obolibrary.org/obo/OHMI_$1"^^ . . "joerg.waitelonis@fiz-karlsruhe.de" . . "SWEET Ontology State Time Frequency" . "false"^^ . . . "icpd.project" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass Flux"^^ . . . . . "dna" . "scop.sun" . . "ILMN_129894"^^ . "engineering" . . "https://services.scicrunch.io/sparc/drs/v1/package/"^^ . "https://bioregistry.io/mirex:"^^ . "NIF Standard Ontology: Neurolex" . . "false"^^ . . . "false"^^ . . . . . . "small molecule" . "clinical studies" . . . "structure" . "ExAC Transcript" . . "4dn.replicate" . "SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain" . . . "https://www.arabidopsis.org/protein?key=$1"^^ . . . "https://spec.edmcouncil.org/fibo/ontology/"^^ . . "Dimension"^^ . . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid="^^ . . . "ontology" . . . "^\\d+$"^^ . . . "Austrian Library Network" . . . "obo" . "false"^^ . . . . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/CharacterSet?lang=en#code_"^^ . "http://www.proglycprot.org/detail.aspx?ProId="^^ . . "1710"^^ . . . "hamap" . . . . . "John Graybeal" . . . . "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . . "false"^^ . . . . . . "true"^^ . . "hubmap.donor" . "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$1"^^ . "gene" . . . "A0014"^^ . "https://registry.identifiers.org/registry/$1" . . . . "http://sweetontology.net/procChemical/$1"^^ . . "MEDLINE" . . . "panther.node" . . "false"^^ . "http://www.w3.org/2008/05/skos-xl#$1"^^ . "An ontology to describe entities related to cardiovascular diseases"^^ . "wot.td" . . . . "ontology" . . "namerxn" . . . . . . "^\\d+$"^^ . "AbsoluteVorticity"^^ . . "^[A-Z0-9]+$"^^ . . "The Artificial Intelligence Ontology" . "false"^^ . . . "oriental-cds@163.com" . . . . "quality" . . "http://purl.obolibrary.org/obo/PRIDE_"^^ . "http://purl.obolibrary.org/obo/OOSTT_$1"^^ . . "ontology" . . . . "https://go.drugbank.com/metabolites/$1"^^ . . "false"^^ . "bsg-000052"^^ . "doco" . . "Contextual Ontology-based Repository Analysis Library - Context and Measurement Ontology" . . . . "^[a-z][a-zA-Z]+$"^^ . . "nfdi4ing" . . . . "fetal fibroblast" . . "Arslaan Zahid" . "http://sweetontology.net/realmLandVolcanic/"^^ . . . "false"^^ . . . . . "ontology" . "false"^^ . "The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s."^^ . . . "computer science" . "EUB0000221"^^ . . "AY321118"^^ . . . . . _:N80bf972ac8de426fbf89216e29d61ef4 "Pance Panov" . "^[0-9a-zA-Z]{8}$"^^ . "gf2018026088"^^ . . . . "sweet.repmg" . "false"^^ . . . "echobase" . "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1"^^ . . . "https://www.synapse.org/Synapse:syn"^^ . . "life science" . . "Dr. Duke's Phytochemical and Ethnobotanical Databases chemical" . . . "false"^^ . "Properties and classes used for protein annotation"^^ . "selventa" . "Identifiers for references, typically linking to sources of evidence such as publications that support data within IEDB."^^ . . . . . . . "Ontology for Chemical Kinetic Reaction Mechanisms" . "0000001"^^ . . . . "^\\D{4}\\d{6}(\\-\\D{2})?$"^^ . . "3639"^^ . "NLXBR" . . "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?$"^^ . "nfdi4chem" . . . . "deepak.unni3@lbl.gov" . . . . . "representation mathematics function orthogonal" . . "http://www.genome.jp/dbget-bin/www_bget?cpd:$1"^^ . . . "https://cohesindb.iqb.u-tokyo.ac.jp/browseloop/eachloop/"^^ . . . "vdrc" . "aclum@lbl.gov" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Location"^^ . . . "false"^^ . "false"^^ . "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene."^^ . "KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links."^^ . . . . "http://purl.obolibrary.org/obo/EMPTY_$1"^^ . "drug interaction" . "biomedical science" . . "pathway" . . . "http://purl.obolibrary.org/obo/GO_"^^ . "rna" . . "paul.fabry@usherbrooke.ca" . . . . "http://purl.obolibrary.org/obo/NBO_$1"^^ . "http://purl.obolibrary.org/obo/HTN_$1"^^ . "Roger Linington" . . . . . "protein-containing complex" . . "rdf" . . "istransbase" . . . "The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases"^^ . "An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases."^^ . . "obo" . . "hoip" . "economics" . . "false"^^ . . . "TemplatedLink"^^ . . "preclinical studies" . . "dataplant" . . . "false"^^ . . "http://purl.obolibrary.org/obo/ECAO_$1"^^ . . . . "interaction" . . . "biodiversity" . "http://sweetontology.net/reprDataFormat/$1"^^ . . . . . . "plana" . . "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility."^^ . "ICEberg integrative and mobilizable element" . . . . . . . "skos" . "pharmacology" . . "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO)."^^ . . "http://purl.obolibrary.org/obo/NCRO_"^^ . "FundRef" . . "Milton H. Saier, Jr." . . "phylogenetics" . . "HMS LINCS Compound" . "https://www.iedb.org/mhc/$1"^^ . "lvont" . . . . . . . . "https://vocab.org/vann/#"^^ . "ppdb" . "7345"^^ . . . "DrugBank Reaction" . "http://sweetontology.net/realmAtmoWeather/"^^ . "^F\\d+$"^^ . . "Simplified molecular-input line-entry system" . "structure"^^ . "false"^^ . "http://purl.obolibrary.org/obo/GEO_$1"^^ . . . . . . . . . . . "forestry" . . . "0000138"^^ . . . . . "false"^^ . . "fillValue"^^ . . "The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)"^^ . . . . "SWEET Ontology Phenomena System" . "false"^^ . . . "viperdb" . . . "http://drugcentral.org/drugcard/$1"^^ . "earth science" . . . . . . "International Traditional Medicine Clinical Trial Registry" . . "NCBI Bookshelf" . . . . . . . . . . . . . "HoloFood animal" . . . . "environmental science" . "star" . "obo" . . . "chemical entity" . . . . . "The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web."^^ . . . "false"^^ . . "diagnosis" . . "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source."^^ . . . . . . _:N8725aa8d24c4416584619feead58772a "J.Bard@ed.ac.uk" . "Identifiers for molecules in SupraBank"^^ . "rna" . . . . "0000253"^^ . . . . . . . "nexus" . "RYYVLZVUVIJVGH-UHFFFAOYSA-N"^^ . . "^[0-9]+$"^^ . . "false"^^ . . "phenomics" . . . "IUPHAR_LIGAND" . . . . "sophb" . . "DiabetesOmic is a multi-omics database designed to collect and analyze transcriptional regulatory information across five high-throughput sequencing modalities, including ChIP-seq, RNA-seq, ATAC-seq, scATAC-seq, and scRNA-seq. This database's identifiers each represent a single sample. It contains clinical complication annotations including diabetic nephropathy, retinopathy, and atherosclerosis to enhance translational relevance. It enables the identification of disease-associated regulatory elements, epigenetic modifications, and cell type-specific molecular signatures, providing valuable insights into the molecular mechanisms of diabetes and its complications."^^ . . . "A collection of ontologies relevant within the [NFDI4Chem project](https://www.nfdi4chem.de/) that is mostly based on the overview paper [Ontologies4Chem: the landscape of ontologies in chemistry](https://doi.org/10.1515/pac-2021-2007).\n\nNFDI4Chem deploys a [custom instance](https://terminology.nfdi4chem.de/ts/) of the Ontology Lookup Service (OLS), called NFDI4Chem Terminology Services (TS), that provides the ontologies in this list. This list contains ontologies that cover various domains of chemistry (e.g. ChEBI, CHMO, and RXNO), those that are dependencies of these chemistry specific ontologies (e.g. BFO, RO, IAO, and OBI) as well as those ontologies, which where indexed in the NFDI4Chem TS for interoperability research purposes (e.g. PROV-O, SOSA, and OBOE)." . "kisao" . . . . . "Asset Description Metadata Schema Vocabulary" . . . . . . "Aeolian"^^ . "false"^^ . . . "http://www.arachnoserver.org/toxincard.html?id="^^ . . . . "https://www.storedb.org/?"^^ . . "post-translational protein modification" . . "false"^^ . . . "ontology" . . . . . "Transcriptional Regulatory Element Database" . "false"^^ . . "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid="^^ . . "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . . . "ontology" . . . "Elspeth Bruford" . . . "ekaterina.chuprikova@eurac.edu" . . "genomics" . "life science" . "gramene.protein" . "pubchem.cell" . "dcat" . "https://search.clinicalgenome.org/CCID:$1"^^ . . . "^\\w+$"^^ . . . . "GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42)."^^ . . . "https://civicdb.org/links/variant_group/$1"^^ . "genecards.geneannot" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Agriculture"^^ . . "behavior" . "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Trust"^^ . . "nucleotide" . "http://jcggdb.jp/idb/jcggdb/"^^ . . "false"^^ . . . "http://lisanwanglab.org/DASHR/entry/"^^ . . . . "ABC"^^ . "ISA1083-2"^^ . "false"^^ . . . . . "genome" . . "false"^^ . "bdgp.insertion" . "The Basic Access Control ontology describes how access rights (access control) are defined on the web."^^ . . "lincs.smallmolecule" . . . . . . . "false"^^ . . . "This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes."^^ . "state role representative" . "http://www.theworldavatar.com/ontology/ontospecies/OntoSpecies.owl#$1"^^ . . . . . . "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did="^^ . . . . "cdt" . . "Access"^^ . . . "proteomics" . "false"^^ . "environmental material" . "plant phenotypes and traits" . . . "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1"^^ . . . "disease" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Fraction"^^ . "clingen.allele" . "AB_262044"^^ . "http://purl.org/dsw/$1"^^ . . . "natural language processing" . . . "subject agnostic" . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Planetary Climate"^^ . . "^\\w+$"^^ . . . "http://autism.mindspec.org/GeneDetail/"^^ . "linguist.gold" . "life science" . . . . "mgnify.proj" . "https://www.mycobank.org/page/Name%20details%20page/$1"^^ . . . . "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds."^^ . "ontology" . "false"^^ . . . . . "^[CRPA]\\d+$"^^ . "protein" . . "obo" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Commerce"^^ . . "http://www.pantree.org/node/annotationNode.jsp?id="^^ . . "https://gpo.ontology.link/GPO_"^^ . . "protein" . . "FooDB Food" . . "s4mari" . "false"^^ . "structural biology" . "^\\d+$"^^ . "ontology" . "Agent"^^ . . "health_care_quality_assessment"^^ . "https://bioregistry.io/pmap.substratedb:"^^ . . . . . "data classification" . "^\\d{7}$"^^ . "^\\d+$"^^ . . . . "Cambridge Structural Database" . . . "https://phagedive.dsmz.de/strain/$1"^^ . . "^\\d+$"^^ . . "An ontology encoding machinery based on the Intelligent Information Request and Delivery (iiRDS) standard"^^ . "proccaserra@gmail.com" . . . "life science" . . "ontology" . . "biomedical science" . . "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1"^^ . . . . "wdduncan@gmail.com" . "AdministrativeRegion"^^ . . "geologic basin" . "https://www.uniprot.org/locations/$1"^^ . "immunology" . "https://mardi4nfdi.de/mathmoddb#$1"^^ . . . . . "40565"^^ . "nuclear" . "gene" . . . . "pictar-vert" . . . "^\\w+$"^^ . "http://purl.obolibrary.org/obo/CHEBI_$1"^^ . . . . . . . . . . "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."^^ . . "Open Energy Ontology" . . "Andy Deans" . "zaking@ucsd.edu" . . . . "^[a-z0-9\\-]+$"^^ . . "4"^^ . "http://www.innatedb.ca/getGeneCard.do?id=$1"^^ . . "https://w3id.org/def/openadr#$1"^^ . . "TripleExpression"^^ . . . . "agb@ebi.ac.uk" . . "developmental biology" . . "AISDevice"^^ . "207LH0002X"^^ . . "http://www.drugtargetontology.org/dto/DTO_$1"^^ . . . . . "education" . "so" . . "false"^^ . "dc_cl" . "http://www.alanwood.net/pesticides/$1.html"^^ . "SRX000007"^^ . . . "biology" . . . . "PRJDB3"^^ . . "genome" . "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym="^^ . . . . . "dome" . . . . . . . "saref.industry" . _:N2bd152f97ac44757940d144d931894a5 . "false"^^ . . "^\\w+$"^^ . "201022999"^^ . "true"^^ . "http://www.pseudomonas.com/feature/show/?locus_tag=$1"^^ . . "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line="^^ . . "false"^^ . "DataNode"^^ . . . "tair.locus" . "^\\d{7}$"^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Rotation"^^ . "sparcdrs" . . . . . . . . . . . "icpd.study" . "SWEET Ontology Realm Biologic Biome" . . "Jonathan Clark" . . . . "bibliometrics" . . . "Chemical reactions in the Merck Index. This website doesn't exist anymore"^^ . "spbase" . . . . "^\\w+$"^^ . . "A database for Triticeae and Avena references."^^ . "17:41223048"^^ . "Adrien Coulet" . "SWEET Ontology Property Space Thickness" . . "life sciences, biology" . . "Legacy site for IETF RFC proposals"^^ . . "http://purl.obolibrary.org/obo/MFOMD_"^^ . . "UniProt Protein" . . . "life sciences, biology" . "false"^^ . _:N6a7028aec9ae4189bbe053d3d8a22017 . . . "^\\d+$"^^ . "The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines"^^ . "digital planning and construction" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Graph"^^ . "Applied Biological Materials cell line products" . "fish" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Scale"^^ . "false"^^ . . . . . "spar" . . . . "animal organ development" . "VEGA" . "^\\d(\\d|\\w)$"^^ . "^\\d+$"^^ . "ZINC1084"^^ . "http://purl.obolibrary.org/obo/MPIO_$1"^^ . . "preclinical studies" . . . . . "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1"^^ . . . "Clytia hemisphaerica Development and Anatomy Ontology" . . . . "apetrov@ebi.ac.uk" . "sopropef" . . "registry" . _:N00f61fd27b78433ca22c0710d7400725 . . . "glyconavi" . "energymarketroles" . . "^\\w+$"^^ . "A user of FAIRsharing"^^ . "https://www.kegg.jp/entry/$1"^^ . "cohesindb.binding" . . . . . . "https://vocabularies.cessda.eu/vocabulary/$1"^^ . . "0002999"^^ . . "00b51s9rc5"^^ . . . "ontology" . . . "chemrof" . . . "digital planning and construction" . "goeco" . "data management" . "thielerstage" . . . . . . "http://astrothesaurus.org/uat/"^^ . "^\\w+$"^^ . "ccrid" . "epidemiology" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Statistics"^^ . . "cp390@cam.ac.uk" . . . "colao" . "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser."^^ . . . "COG Categories" . "Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc."^^ . . "structure" . "^PRI\\d*$"^^ . "organ" . "state solid" . . "true"^^ . . "Categories in the AFTOL database"^^ . . . . . "http://www.whocc.no/atc_ddd_index/?code="^^ . "A project in the nmrXiv"^^ . "nckyrpides@lbl.gov" . "homd.taxon" . "EVORA Ontology" . . . "The Ageing Gene Database" . . . . . . "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens."^^ . "PANTHER Pathway Component" . "ontology" . . . . "http://vocab.getty.edu/ulan/"^^ . . . . "Component"^^ . "taxonomy" . . "Selventa legacy disease namespace used with the Biological Expression Language"^^ . . . . "subject agnostic" . "Semantically-Interlinked Online Communities, or SIOC, is an attempt to link online community sites, to use Semantic Web technologies to describe the information that communities have about their structure and contents, and to find related information and new connections between content items and other community objects. SIOC is based around the use of machine-readable information provided by these sites."^^ . "https://github.com/monarch-initiative/mondo/issues/"^^ . "false"^^ . . . . . . "cardiovascular disease" . "SNOMEDCT_US" . . "false"^^ . "botany" . . . . . "obo" . . "methods" . "ontology" . . . . . "dna" . . "molecules" . . "e001"^^ . "^\\d+$"^^ . . . . . . "1000000"^^ . . . "csvw" . . . . . "Damien Goutte-Gattat" . "elisa-kits" . . "biomedical science" . . . . . . "10004892"^^ . . "DataCollection"^^ . "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements."^^ . . "Mouse gross anatomy and development, timed" . "https://bioregistry.io/lrg:"^^ . "structure" . . "https://vocabularies.cessda.eu/vocabulary/CESSDADataCatalogueCollections?lang=en#code_"^^ . "false"^^ . "Identifier used by the Cancer Chemotherapy National Service Center."^^ . "phenomena" . "Wikipedia" . "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:"^^ . . "MaizeGDB Locus" . . "https://www.worldwildlife.org/ecoregions/"^^ . . "biomedical science" . "Gwen Frishkoff" . . "ess" . "As the variable is one of the most relevant entities to enhance data reuse in the Social Sciences, we provide a framework design to better semantics the variables' relations descriptions. These explicit relations between variables enable comparability and facilitate harmonization across waves. We provide a brief textual identification of the relation type, supported by a controlled vocabulary (CV) and an extended description of the relationship. These relations within variables include but are not limited to different versions, derived formats in new waves, new labels and name wording, and alternative response schema through questionnaires and surveys. For instance, a given variable label is changed from one wave to another, even though its concept remains the same. Their values also are subject to change, such as new cardinalities settings, their categorization, or response scheme and scale measurement. They change based on different conditions, e.g., values are updated by any constraints or modified to comply with the study evolution requirements or a new sociological approach. In the Social Sciences, Economics, and Behaviour Sciences, which investigate, for instance, the social structure of the population, political attitudes of voters and candidates, opinions on family, work, religion, politics and society or competencies of adults, those topics are highly subject to change to fit the empirical reality in a constantly changing world. Thus, we propose widening relations descriptions for Social Sciences variables within datasets beginning from the BasedOnObjectType DDI as a first approach."^^ . . . . . . . . "The International Clinical Trials Registry Platform, originally called International Standard Randomised Controlled Trial Number (ISRCTN) registry, is a primary clinical study registry recognised by the World Health Organisation (WHO) and the International Committee of Medical Journal Editors (ICMJE) that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)"^^ . . . "false"^^ . "biomedical science" . "false"^^ . "chebi" . . . . . . . . . . . . . "protein" . "ontology" . "temperature" . . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013."^^ . . . . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Energy"^^ . . . . . . . "spa"^^ . . . "sweet.repdsr" . . . "gene expression" . "pmr.workspace" . . "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures."^^ . "https://w3id.org/fair/principles/terms/$1"^^ . . . "true"^^ . "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines."^^ . . "Variation Modelling Collaboration" . . . . . . "http://purl.obolibrary.org/obo/AISM_"^^ . . . "kit.mtxx" . "41455251.1"^^ . "life science" . "^\\d+$"^^ . "ESCO - International Standard Classification of Occupations" . . "ontology" . "March 2017 version "^^ . . . . "^DDB_G\\d+$"^^ . . . "http://purl.obolibrary.org/obo/GSSO_$1"^^ . . _:N84c6297fda9547a78800e6ff53c2f0da . . . . . . . "International repository of Adverse Outcome Pathways."^^ . . . . . . . . "funcbase.yeast" . . . . . "http://www.proteinmodelportal.org/query/uniprot/$1"^^ . . "epidemiology" . . "false"^^ . "Long Term Ecological Research Controlled Vocabulary" . . . . . . . . "ess" . "https://www.genenames.org/data/genegroup/#!/group/"^^ . . . . "nlcd" . "iceberg.ime" . . "false"^^ . . . . . "10595"^^ . . "Foundational Model of Anatomy" . . "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"^^ . . "https://viralzone.expasy.org/$1"^^ . . "Geonamaes" . . "sostef" . . . . "Cellosaurus" . . . . "chemspider" . . "0000ffeb-36e0-4a29-b21d-84423bda979d"^^ . . "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Storm"^^ . . . . . "span" . . . . . . . "true"^^ . . "http://www.ebi.ac.uk/cmpo/CMPO_$1"^^ . . "^\\d{7}$"^^ . "activityPlan"^^ . . . . "CEMS"^^ . . "coypu" . "metanetx.compartment" . . . "1cukA01"^^ . . "https://www.wormbase.org/db/seq/protein?name="^^ . . . "nfdi4ing" . . "multigene families" . . . . . . "http://purl.obolibrary.org/obo/DINTO_"^^ . "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" . . "Identifiers for specific experimental assays that serve as evidence for immune-related studies."^^ . . . . "aclame" . . . "nfdi4chem" . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock Igneous"^^ . "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)."^^ . "genome" . "false"^^ . . . "omics" . "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies."^^ . . "saref.grid" . "Descriptive Ontology for Linguistic and Cognitive Engineering" . . "http://lisanwanglab.org/DASHR/entry/$1"^^ . . . "thermofisher" . "ontology" . . . . "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells."^^ . "A language for validating RDF graphs against a set of conditions"^^ . . . . . . . "https://purl.org/fidbaudigital/subjects#$1"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Categorical"^^ . "^tgv[0-9]+$"^^ . . . "iceberg.family" . . . . . "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . "proteomics" . . . . . . . . "https://www.abmgood.com/search?query="^^ . "ontology" . "nfdi4ing" . . . "structure" . . . . . "1178"^^ . . . . "genetic disorder" . "true"^^ . "false"^^ . . "sasap" . . . "EMLSAT00000003403"^^ . . . "owlstar" . "sweet.repds" . . . . "http://purl.obolibrary.org/obo/DDANAT_$1"^^ . "earth science" . . "gear" . . . . . . "proteomics" . . "Unique Ingredient Identifier" . "https://aopwiki.org/relationships/"^^ . . . . "^A\\d+$"^^ . . . . . . "Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases."^^ . "Battery Interface Ontology" . . . "^[0-9]+$"^^ . . . "false"^^ . . "medlineplus" . "computer science" . "false"^^ . "immunogenetics" . . . . "27223"^^ . "^\\d*$"^^ . "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1"^^ . "0000440"^^ . "ChemBioSys Investigation" . "genomics" . . "National Repository of Fish Cell Lines" . "sopropdife" . . . "BioData Catalyst" . "life sciences, biology" . "phenotype" . . "Intelligence Task Ontology" . . . . . . . . . _:N297f46f898cd4491b122d134776702f1 "Cyril Pommier" . . . "false"^^ . "computational biology" . "false"^^ . . "UBREL" . . . . "https://vocabularies.cessda.eu/vocabulary/NumericType?lang=en#code_$1"^^ . "comparative genomics" . . . . "21393"^^ . "obo" . . "https://data.bloodpac.org/ga4gh/drs/v1/objects/"^^ . "ontology" . . . . "^\\d+$"^^ . . . "ontology" . . . . "computational biology" . "false"^^ . . . "Name Reaction Ontology" . "^\\d{8}$"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Control"^^ . "obo" . . "oral surgery" . . "^\\d{7}$"^^ . . "drug discovery" . . "^[0-9]+$"^^ . . . . . "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology."^^ . . . . "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1"^^ . . . . . . "Protein and Associated NucleotideDomains with Inferred Trees" . "http://cellimagelibrary.org/images/$1"^^ . . "prov" . "Identifiers.org" . . "false"^^ . "sasbdb" . . "beiresources" . "ACH-000001"^^ . "^\\d+$"^^ . "https://bioregistry.io/dragondb.allele:"^^ . . . . . "Daniel N. Wilson" . "^\\d+$"^^ . "false"^^ . "phenotype" . "http://sweetontology.net/propCount/$1"^^ . . "bibliometrics" . . . "http://sweetontology.net/reprMathStatistics/"^^ . "false"^^ . . "false"^^ . . "small molecule" . . . "https://flybase.org/reports/FBtc$1"^^ . "digital planning and construction" . "false"^^ . . "false"^^ . "true"^^ . . "time" . . "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1"^^ . . "nfdi4chem" . . "http://sweetontology.net/realmAtmoWeather/$1"^^ . "state data processing" . . . . "merops.clan" . "stefan.guenther@pharmazie.uni-freiburg.de" . . . "sostre" . "Christian Hauschke" . "Flybase Cell Line" . . "false"^^ . . . . "Bjoern Peters" . . "preclinical studies" . "http://sweetontology.net/stateSpaceConfiguration/$1"^^ . . "https://europepmc.org/article/CBA/"^^ . "paralogous" . . "phenotype" . "kcris" . . "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources."^^ . "false"^^ . "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx"^^ . . . "Web Elements" . "false"^^ . . . . "social sciences" . . . "SM00015"^^ . "https://bacteria.ensembl.org/id/"^^ . "atmosphere fog" . . . . . . "bdsc" . . . . "DateTimeDescription"^^ . "Q42"^^ . . . "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments."^^ . . . . . . . . "go.rule" . . . . . "Anne.Morgat@sib.swiss" . "Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business."^^ . . . . . . . "Comprehensive reference information for the world's languages, especially the lesser known languages. [from homepage]"^^ . . "Healthcare Common Procedure Coding System" . . "ychai@usc.edu" . "ontology" . "false"^^ . . . . "an RDF vocabulary for the security metadata definitions"^^ . . . "European Genome-phenome Archive Study" . "vto" . . "commerce" . "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/"^^ . "life science" . "https://github.com/monarch-initiative/mondo/issues/$1"^^ . . "tcdb" . "^\\d+$"^^ . . . "^\\d+$"^^ . "sohud" . . . . "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true"^^ . . "ddi.typeoftranslationmethod" . . "^EBI\\-[0-9]+$"^^ . . . "^\\d+$"^^ . . "The LifeWatch Metadata Catalogues plays a crucial role in managing metadata for digital objects, including Datasets, Services, Workflows and Virtual Research Environments. This catalogue serves as the central repository, ensuring that resources are accessible and reusable by stakeholders."^^ . "^\\w+$"^^ . . "life science" . "https://hdl.handle.net/hdl:20.500.12633/"^^ . "classification" . "tgv139393198"^^ . . "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_"^^ . . . "plant phenotypes and traits" . . . . . . "TogoVar (A comprehensive Japanese genetic variation database) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them."^^ . . "false"^^ . . "SWEET Ontology Property Space" . . . . . . "BioDeep Database" . "openeduhub.context" . . "^GR\\:\\d+$"^^ . . . . . "life science" . . . . "9606"^^ . "1047874"^^ . . "https://odc-tbi.org/data/"^^ . "achcar11"^^ . . . . . . "medical informatics" . . . "obo" . . . "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits."^^ . "medical imaging" . . . . . . . . . . "funding agencies" . . "sweet.propef" . . . "time frequency" . . . . . . . "false"^^ . . . . "Neurofibromatosis Data Portal Tools" . "AirPollution"^^ . . . . "Jeet Kiran Vora" . . . "jRCTs041220087"^^ . . "An ontology to support comparative effectiveness researchers studying claims data."^^ . "^CA\\d+$"^^ . . . "hom" . . "SAREF extension for environment" . . "6038"^^ . "BiometricProperty"^^ . . "^\\w+$"^^ . "BaseUnit"^^ . . "T06648"^^ . . . "biology" . . . . . "false"^^ . . . . "life cycle" . . . "plant_reactome" . . "http://id.loc.gov/ontologies/bibframe/$1"^^ . . "arraymap" . . "publishing" . . . "^\\d+$"^^ . . . "SNOMEDCTCT_2019_03_01" . . . "0000001"^^ . "Chris Hunter" . . . . . "^\\d{7}$"^^ . . "kinetics" . . "ess" . . "jason.stajich@ucr.edu" . . . . . "0000550"^^ . . "true"^^ . . . "life science" . "This SKOS vocabulary describes types of primary and secondary schools in Germany, such as Grundschule, Gymnasium, and Realschule. This does not include post-secondary education such as universities or hochschulen."^^ . . . "NIFEXT" . . . "metabolites" . . "Ontology of Organizational Structures of Trauma centers and Trauma systems" . "CAMEO Chemicals ID" . . . . . "microbiology" . "CIViC Evidence" . . "br/0601"^^ . "classification" . "http://genomics.senescence.info/diet/details.php?id=$1"^^ . . . . "debio" . . "https://www.ncbi.nlm.nih.gov/sra/$1"^^ . . . "classification" . "Cell line collections (Providers)"^^ . "614"^^ . "http://purl.obolibrary.org/obo/VariO_$1"^^ . "environmental control" . . "neurophysiology" . . . . "false"^^ . . . "biology" . "cosmic.gene" . "^\\d+$"^^ . . . . . "http://sweetontology.net/phenPlanetClimate/"^^ . "https://www.fao.org/fishery/en/species/$1"^^ . . . . . . "metadata" . "chemistry" . . . "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons."^^ . "sequence" . . . "http://purl.obolibrary.org/obo/OAE_"^^ . . "146421"^^ . . "go.chemical" . "miseming@sfu.ca" . "Human ancestry ontology for the NHGRI GWAS Catalog"^^ . . . . . . "Gramene Reference" . . "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays."^^ . . "880798137"^^ . . . "https://biopragmatics.github.io/providers/cvx/$1"^^ . "sophgg" . . . . . . . "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions."^^ . . . "http://edamontology.org/operation_$1"^^ . . "Marc Hanauer" . "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance."^^ . "ontology" . "http://purl.org/eis/vocab/scor#$1"^^ . "27106865"^^ . . "mobio" . . "intenz" . "PF" . . "HUMAN0000174"^^ . "swiss-model" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Instrument"^^ . . . "PhosphoSite Curation" . "A registry of life science prefxes"^^ . "agrkb"^^ . . "chembl.target" . . "pathway" . . . "true"^^ . . "http://purl.obolibrary.org/obo/HSO_$1"^^ . . . "http://csbl.bmb.uga.edu/DOOR/operon.php?id="^^ . "1"^^ . . . "http://purl.obolibrary.org/obo/CHMO_$1"^^ . . "^\\d+$"^^ . . "decimal"^^ . "The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes."^^ . . "ontology" . . . . "Eric W. Deutsch" . "OntoDM-core defines the most essential data mining entities in a three-layered ontological structure comprising of a specification, an implementation and an application layer. It provides a representational framework for the description of mining structured data, and in addition provides taxonomies of datasets, data mining tasks, generalizations, data mining algorithms and constraints, based on the type of data. OntoDM-core is designed to support a wide range of applications/use cases, such as semantic annotation of data mining algorithms, datasets and results; annotation of QSAR studies in the context of drug discovery investigations; and disambiguation of terms in text mining. (from abstract)"^^ . . "EuroVoc" . . "63"^^ . . "The Virus Infectious Disease Ontology" . . . . . . . . . . "^\\d+$"^^ . "cran" . . . "neurology" . . . "SWEET Ontology Process Physical" . . . . . . . . "Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages."^^ . . "https://www.ebi.ac.uk/pride/archive/projects/"^^ . . . "relationships" . . . . . . "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community."^^ . . . . "ISBN-13" . . . "sedml.format" . . . "http://ontology.bonsai.uno/core#$1"^^ . . . . "Sigma Aldrich is a life sciences supply vendor."^^ . "obo" . "developed by ICARDA - Dec 2018"^^ . . . "simon.harding@igmm.ed.ac.uk" . . . "omics" . . . . . . "false"^^ . . "environmental conservation" . "ArithmeticMean"^^ . . "Jose P. Faria" . "^\\d+$"^^ . . . "Database portal containing replicate experiments of different assays and samples"^^ . "true"^^ . . "false"^^ . "^CDBL00\\d{6}$"^^ . . . "false"^^ . "phenomena" . . "http://purl.obolibrary.org/obo/MIAPA_"^^ . "Action"^^ . . "0000001"^^ . "Jörg Waitelonis" . . . . . "myco.tuber" . . "vocabularies" . . . "sweet.stp" . "ontology" . . . . . . "http://www.bindingdb.org/rwd/entry/"^^ . . . . "educational resources" . "false"^^ . "mycobank" . . . . "jaxmice" . "https://bioregistry.io/kerafast:"^^ . . "false"^^ . . "cell line" . . . "life science" . "false"^^ . . . . "soreagcons" . "2639"^^ . "false"^^ . . . . . . _:Na7204b7b8748447d8d02752e755a2b9d "Marc Wick" . . . . . . "http://metlin.scripps.edu/metabo_info.php?molid=$1"^^ . . "XUO" . "^\\d{7}$"^^ . "Assigns identifiers to knowledge graphs (KGs) that are used and/or maintained within any NFDI consortium."^^ . . "https://ngdc.cncb.ac.cn/genbase/search/gb/$1"^^ . . "0000015"^^ . . . "false"^^ . "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references."^^ . "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."^^ . . "ped.ensemble" . "atomicMass"^^ . _:Nc8ffdfd6c67e4ea1bd6f004ff8221d40 "INOH curators" . . . "https://repo.napdi.org/study/$1"^^ . . "fair data spaces" . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . "^\\d+$"^^ . . "License"^^ . . "^PTN\\d{9}$"^^ . "dashr@lisanwanglab.org" . "https://omim.org/MIM:$1"^^ . . . . . "classification" . . "^\\d+$"^^ . . "The Getty Iconography Authority ™ (IA), Cultural Objects Name Authority ® (CONA), the Union List of Artist Names ® (ULAN), the Art & Architecture Thesaurus ® (AAT), the Getty Thesaurus of Geographic Names ® (TGN) are structured resources that can be used to improve access to information about art, architecture, and other material culture. The Vocabularies are not simply 'value vocabularies,' but knowledge bases. Through rich metadata and links, the Getty Vocabularies provide powerful conduits for knowledge creation, complex research, and discovery for digital art history and related disciplines. [from https://www.getty.edu/research/tools/vocabularies/cona/about.html#purpose_ia]"^^ . . "Database of Spatially Interacting Motifs in Proteins" . "ontology" . . . "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions."^^ . . . . "FlyBrain Neuron Database" . . "Sorghum ontology" . "mro" . "drugs" . "ontology" . . . "gene expression" . . . "5.1"^^ . . . . "C. Robin Buell" . . "obo" . . . "matrixdb.association" . . "Allergy"^^ . "pruitt@ncbi.nlm.nih.gov" . "bioinformatics" . . "false"^^ . "ontology" . . . "Bioregistry" . . . . . . . "false"^^ . . . . . . "http://sweetontology.net/phenFluidInstability/"^^ . . . "ChEMBL-Cells" . . . "imotdb" . "false"^^ . . "sopropcha" . "Molecular database for the identification of fungi" . . "https://www.glycoepitope.jp/epitopes/"^^ . . . "false"^^ . . . . "planp" . . "owl" . "human" . . . "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1"^^ . "centrally registered identifier" . . "false"^^ . "obo" . "RAiD is an identifier and global system, governed by ISO 23527:2022, to uniquely identifiy research projects, collaboratively, collect and publicly share information about them."^^ . . . . . "^[EL]D[SG]-\\d+$"^^ . "work" . "Peroxibase" . . "false"^^ . . . "molecular biology" . . "sopropsdir" . . . "s4ehaw" . "^\\d+$"^^ . . "http://www.w3.org/ns/shex#$1"^^ . . . . . "Colleen Xu" . . . "safisher@upenn.edu" . . . _:N1c8a98a560654afcad8ba6539cb113b6 "michael.lincoln@va.gov" . . . "nfdi4ing" . . . . "tritrypdb" . "PhageDive is a database for bacteriophages and archaeal viruses. It provides information regarding taxonomy, host strain, phage morphology, life cycle, origin and genomic data."^^ . . . "mf" . . . . . . "learning resource" . . . . "PF11_0344"^^ . . . "http://sweetontology.net/realmGeolConstituent/$1"^^ . . . . . "NEPOMUK Annotation Ontology Specification" . . . . "w3c rec" . . "InForce"^^ . . . . "jmg11@cam.ac.uk" . "nfdi4ing" . . . "false"^^ . . "medicine" . . . "false"^^ . "https://lincs.hms.harvard.edu/db/proteins/"^^ . "GeoSPARQL Rule" . "LINCS Small Molecule" . "life science" . "false"^^ . . . . . . "^[0-9a-zA-Z]+$"^^ . . . . . "Recommendation"^^ . . "ontology" . "false"^^ . "true"^^ . . . . . "http://purl.obolibrary.org/obo/COLAO_"^^ . . . . . . "0000435"^^ . . . "MolBiC Cell Line" . . "virology" . "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects."^^ . . . "false"^^ . "https://www.fishbase.ca/summary/"^^ . . . . . "false"^^ . . . "https://reporter.nih.gov/project-details/"^^ . . "metascience" . "nfdi4chem" . . "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."^^ . . "https://www.disprot.org/idpo/IDPO:$1"^^ . "false"^^ . . "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1"^^ . . "disorders" . . . "false"^^ . . . "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes."^^ . "Chemical Information Ontology" . "classification" . . . . "http://iirds.tekom.de/iirds/domain/software#$1"^^ . . "http://www.pantherdb.org/panther/family.do?clsAccession="^^ . "false"^^ . . "http://purl.obolibrary.org/obo/HOM_$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Energy"^^ . "https://bioregistry.io/genecards.genenote:"^^ . "A vocabulary about species to support the environmental research community in Arizona and New Mexico"^^ . . "Xenopus Anatomy Ontology" . . _:N6049951dc37b437290ce59d2ee9c34ca . "false"^^ . "development" . . . . "Educational Sectors Vocabulary" . "bf" . . "326705068"^^ . . . . . "ontology" . "life science" . . "Ontology for Parasite LifeCycle" . "ess" . "life science" . . "false"^^ . . . . "AT1402"^^ . . . . . . "BindingDB" . "VMH reaction" . . "A Semantic Web Rule Language Combining OWL and RuleML" . . . . . "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover."^^ . . . . "phenomena" . "fish" . . . "marine environment" . . "Golm Metabolome Database Profile" . . "nfdi4chem" . "SWEET Ontology Relationships Climate" . . . . "https://cropontology.org/rdf/CO_346:"^^ . . . . "s02"^^ . . . "MIRBASEM" . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1"^^ . . "http://mlcommons.org/croissant/"^^ . "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId="^^ . . . "^\\d+$"^^ . "hl7.v2codesystem" . . . . "orcid" . . . "sopropcat" . "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$"^^ . . . "http://n2t.net/ark:$1"^^ . . . "^\\d{8}$"^^ . . "false"^^ . . . "ontology" . . "85dc6019-9654-4ba0-8338-08c4ffe8fe47"^^ . . "competence" . . . . . "gtuco.btuco@gmail.com" . "rec" . "gfrishkoff@gsu.edu" . . . . . . . . . . "City"^^ . "phenotype" . "annotation" . . . . . . "http://purl.obolibrary.org/obo/ZFS_$1"^^ . . "expression" . . "fullname"^^ . . "patient care" . "gene" . "false"^^ . "false"^^ . "^PASS\\d{5}$"^^ . . "Oliver Fiehn" . . . . . "dsm-iv" . "ontology" . . . . "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models."^^ . . "interaction" . . "Tiago Lubiana" . "biomedical science" . "Sheeba Samuel" . "genome" . . . "RHEA" . . "https://www.ncbi.nlm.nih.gov/probe/?term="^^ . "https://w3id.org/emmo/domain/atomistic#$1"^^ . "^EMD-\\d{4,5}$"^^ . "genome" . "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=$1"^^ . . . . . . "ro" . "false"^^ . . . . . "Yiming Bao" . "false"^^ . . . . . "life science" . _:Nb10ba5affc994ec9ab0861313cc0db98 "Jonathan Bard" . . . . . "false"^^ . . . . . . . . . "false"^^ . . . "Material properties ontology" . . . . "UCR00513"^^ . . "umbbd.enzyme" . "https://www.storedb.org/?STOREDB:DATASET$1"^^ . "food" . . . "ontology" . "ess" . . . "society" . "genomics" . "stem cell" . . . "ontology and terminology" . . . . . . . "false"^^ . . . "Specifies the type of date."^^ . "https://redoxibase.toulouse.inrae.fr/display_perox/view_perox/$1"^^ . . "^\\d+$"^^ . . "metadata standardization" . "42840"^^ . . . . "International Standard for Intelligent Information Request and Delivery Core Ontology" . . "https://vocabularies.cessda.eu/vocabulary/SamplingProcedure?lang=en#code_"^^ . "arxiv" . . . . . "DrugBank Target v4" . "false"^^ . . . . . . "false"^^ . . "github" . "n4e" . "true"^^ . . . "Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. A mechanism can be constructed from thermodynamic, reaction rate, and transport data that has been obtained either experimentally, computationally, or by a combination of both. In order to implement this approach, two existing ontologies, namely OntoKin, for representing chemical kinetic reaction mechanisms, and OntoCompChem, for representing quantum chemistry calculations, are extended. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . . . . . "obo" . . . "homosaurus" . "9-1-1 Complex"^^ . . . . . "infection process" . . . . "ontology" . . . . "false"^^ . . "false"^^ . . . "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1"^^ . . "false"^^ . . "17165"^^ . "EC" . . "https://bioregistry.io/nsrrc:"^^ . . "false"^^ . "false"^^ . . "Berkeley Drosophila Genome Project EST database" . . . "UniProtKB" . . "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks."^^ . . "false"^^ . . "Structural Classification of Proteins - Unique Identifier" . "life science" . . . . "^[FKPU]\\d{3}$"^^ . . . "pubmed"^^ . "RISM Online" . . . . . "100"^^ . "false"^^ . . "false"^^ . "physics" . . "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . . "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"^^ . . "^WP\\d{1,5}(\\_r\\d+)?$"^^ . . "http://terminologies.gfbio.org/terms/ETS/$1"^^ . . "false"^^ . "OriDB Saccharomyces" . . . "riboCIRC" . "https://www.eionet.europa.eu/gemet/en/group/"^^ . . "Sri Lanka Clinical Trials Registry" . _:N6b1382efe5fb4366956d5037da85ce95 "gary@sourceauditor.com" . "Creative Biolabs antibody" . "http://sweetontology.net/matrIsotope/$1"^^ . "ecosystem" . . . . . . . . "worldavatar.os" . . "SMP0000219"^^ . "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$"^^ . . . . "cycle" . "false"^^ . . "computational chemistry" . . . . . . . "Jörg Stülke" . . "SAREF4MARI is an extension of SAREF for the maritime domain."^^ . . . . . "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/"^^ . "https://molbic.idrblab.net/data/cellline/details/"^^ . "http://www.w3.org/2001/XMLSchema#$1"^^ . "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id="^^ . "0002533"^^ . . . _:N3d0181ab1df145e7ae77e2deb6b4d42e . "repository" . . "pmdco" . . . . "NFDI4DataScience Collection" . "ddi.datetype" . . "classification" . "Collembola Anatomy Ontology" . "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id="^^ . "neurophysiology" . "MGYP000261684433"^^ . . . . . "nmrcv" . . . . . . . . "Fabrice Legeai" . "http://eugenes.org:7072/.bin/fbidq.html?$1"^^ . . "PdumDv" . . . . "food" . . "false"^^ . . . . "scholia.resource" . . "0000093"^^ . . "false"^^ . . . . . "0000390"^^ . "false"^^ . "snorna-protein" . . . . . "biomedical science" . . "life sciences, biology" . "LIPID_MAPS_instance" . "life science" . "Docker Hub repository" . "http://www.w3.org/ns/rdfa#$1"^^ . . . "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm"^^ . "BSU29180"^^ . "SWEET Ontology Process" . "Denny Vrandečić" . . . "https://bioregistry.io/cst.antibody:"^^ . "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)."^^ . . . . . "disprot" . "annethessen@gmail.com" . . . . . "^\\d{7}$"^^ . . . "^CHEMBL\\d+$"^^ . "http://pax-db.org/#!species/"^^ . "https://www.genenames.org/data/gene-symbol-report/#!/symbol/"^^ . . . _:N5d9c3be158a74fbca99ba8161d72e569 "PhenX Admin" . . "secretariat@eol.org" . "mentor"^^ . "AHR"^^ . "AMDEFA"^^ . "https://metacyc.org/META/NEW-IMAGE?object=$1"^^ . . "false"^^ . "Laurent Duret" . "wikipathways.vocab" . . . . . "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" . "Kinetic Data of RNA-Protein Interactions Database" . . "false"^^ . "Information Objects Ontology" . . . . . "biodeep" . . . . . . "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data."^^ . . . . . "sweet.propdife" . "0000004"^^ . "https://pubchem.ncbi.nlm.nih.gov/element/$1"^^ . . . "0000127"^^ . . . . "BAC045"^^ . "https://www.ncbi.nlm.nih.gov/homologene/$1"^^ . . "http://purl.obolibrary.org/obo/ONTONEO_$1"^^ . . . _:Nc8ffdfd6c67e4ea1bd6f004ff8221d40 . . "http://purl.org/spar/pro/$1"^^ . . "t59328"^^ . "http://www.humanproteomemap.org/spectrum.php?pep_id="^^ . "epidemiology" . "enzyme" . "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"^^ . "obo" . . . . "Health Canada Natural Product Number" . . . "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession="^^ . . "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1"^^ . . . . . . . . . . . "gard" . . . . "sediment" . "https://w3id.org/babelon/"^^ . . . "false"^^ . . . "^\\d{7}$"^^ . . . . . "molecular entity" . . . "polypeptide region" . . . . . "false"^^ . "https://web.expasy.org/abcd/ABCD_"^^ . " tectonicland" . "false"^^ . . . . . "ctibor.skuta@img.cas.cz" . . . "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project." . . "EndlessForms Studio Image Collections" . . . "^\\d+$"^^ . . "chenyangnutrition@gmail.com" . . "Christoph Wohner" . . . . "anatomy" . . . . . . . . "life sciences, biology" . "owl" . "false"^^ . "http://sweetontology.net/stateSolid/$1"^^ . "tib.fto" . . . . . "https://portal.issn.org/resource/ISSN/"^^ . . . . "^\\d{7}$"^^ . . . . . . . . . . . "false"^^ . "false"^^ . . "donny@polyneme.xyz" . "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena"^^ . . . . "ontology" . "metabolite" . "GOLD genome" . . . "codelink" . . . . . . "0000194"^^ . . . . "ontology" . "representation data service" . . . "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."^^ . . . . "90000018"^^ . . . . . "false"^^ . . "https://lincs.hms.harvard.edu/db/antibodies/"^^ . "small molecule" . . . "data analysis service" . . . . "false"^^ . . . . . . . "0100002"^^ . . "PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources."^^ . "tissue" . "Actor"^^ . . . . . "^\\d{6,8}$"^^ . . . "PK-DB" . . "orphanet" . "188"^^ . "https://www.dbgi.org/earth_metabolome_ontology/#$1"^^ . . . "luana.licata@gmail.com" . "OWL ontology for the IFC conceptual data schema and exchange file format for Building Information Model (BIM) data"^^ . . . . . "biorxiv" . . "The Audience Types Controlled Vocabulary was created for NSF's EarthCube program's Resource Registry. The vocabulary defines the types of audience each resource in the program is targeted to. At this point the vocabulary is very bare - no term definitions even; however, the intention is to extend the vocabulary over time. If you would like to assist with this or in extending any of the other controlled vocabularies/ontologies developed as part of the Resource Registry project, please see https://github.com/earthcubearchitecture-ecresourcereg."^^ . . . "José Victorino Ruiz Lavida" . . . "interaction" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry"^^ . "^\\d{7}$"^^ . "A disease/condition-specific instantiation of a canonical biomarker"^^ . "fid baudigital" . "International Standard for Intelligent Information Request and Delivery Software Ontology" . . . . . "sweet.procw" . "^\\d{7}$"^^ . "ontology" . . . "protein" . . . "kegg.genes" . . "Annotated Regulatory Binding Sites" . . "rdbsb" . . . "false"^^ . . "https://mibig.secondarymetabolites.org/go/$1"^^ . . . . "gene expression" . . "space direction" . "protein" . "http://synbip.idrblab.net/data/bts/details/$1"^^ . "229233"^^ . . . . "https://loinc.org/$1"^^ . . "life science" . "computer science" . . . "biomarkerkb.canonical" . "MolGlueDB" . "http://sweetontology.net/propRotation/$1"^^ . . "ontology" . "bibliography" . . . "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world."^^ . . "patricia.siguier@univ-tlse3.fr" . . . "ontology" . . "SustainGraph Ontology" . "maxo" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Tectonic"^^ . "^MITE\\d{7}$"^^ . "phenotype" . "lifengcheng@zju.edu.cn" . . "SM0000020"^^ . . . "^COG\\d+$"^^ . . . . . . "http://sweetontology.net/stateChemical/$1"^^ . . . "Dongsheng Cao" . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . "https://bioregistry.io/metaregistry/go/"^^ . . "MMP0523"^^ . . . "^\\d{6}$"^^ . . . . "0015177"^^ . . . . . "sorepsd" . . "classification" . "sweet.stsp" . . . "chemical" . "http://vocabularies.unesco.org/thesaurus/concept$1"^^ . . "rdfa" . "^[1-9][0-9]*$"^^ . . "National Experimental Cell Resource Sharing Platform" . "gene expression" . . "Computer Retrieval of Information on Science Projects Thesaurus" . "0002502"^^ . "https://www.imanislife.com/?s="^^ . . . . . . . "^\\d+$"^^ . . . "^H\\d\\.\\d{2}\\.\\d{2}\\.\\d\\.\\d{5}$"^^ . . . . "bel"^^ . "false"^^ . . _:N7852fe3f7a8b4c05a86670994e34ae06 . . "inspire.theme" . . . "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps."^^ . "http://purl.obolibrary.org/obo/EO_$1"^^ . "biodiversity" . "mt002305"^^ . . "3546"^^ . . . . . . . "disease" . . . "http://purl.org/ontology/bibo/"^^ . . "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$"^^ . . . "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA."^^ . "omics" . "protein" . "contributor"^^ . . "bioinformatics" . . . . . . . . "drug discovery" . . . . . "sitex" . . . "rvita@liai.org" . . . . . "ctri" . "http://purl.obolibrary.org/obo/NGBO_"^^ . . . "biomedical science" . . . "LCCN Permalinks are persistent URLs for bibliographic records in the LC Catalog and authority records in LC Authorities. These links are constructed using the record's LCCN (or Library of Congress Control Number), an identifier assigned by the Library of Congress to bibliographic and authority records. LCCN Permalinks are also available for citation records in the Handbook for Latin American Studies (HLAS). [from homepage]"^^ . . . . . . . . "http://web.resource.org/cc/"^^ . "https://osdr.nasa.gov/bio/repo/data/subjects/"^^ . . "https://w3id.org/oc/corpus/$1"^^ . . . . "The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes."^^ . . "0004486"^^ . . . . . . . . . . . . "false"^^ . . "^[0-9a-z_-]+$"^^ . . . "H-InvDb Transcript" . "European Medicines Evaluation Agency" . . . . . . "The HoloFood Data Portal centralizes access to datasets from the HoloFood project, which explores host microbiota interactions in salmon and chicken production. It links phenotypic data with microbiome samples and derived genomic resources and therefore simplifies data integration, supporting researchers in multiomics and microbiome studies. The identifiers in the samples semantic space represent samples derived from animals in HoloFood trials."^^ . _:Ndda8e0c79b85494ea807f86806b8715c "Gregg Kellogg" . "https://bioregistry.io/iceberg.ime:"^^ . "http://www.ebi.ac.uk/efo/EFO_$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Chemical"^^ . "UniProtKB-SubCell" . "Food Type identifiers, supporting codes and vocabularies based on the EFSA FoodEx2 (https://www.efsa.europa.eu/en/data/data-standardisation) that are being tested in the development of the FSA's code and data standards repository. These codes may be used within FSA data."^^ . . "symptom" . "gxa.expt" . . . . . . . "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s)."^^ . "NCI2004_11_17" . "MARC List for Languages provides three-character lowercase alphabetic strings that serve as the identifiers of languages and language groups. The codes are usually based on the first three letters of the English form or, in some cases, vernacular form of the corresponding language name. The codes are varied where necessary to resolve conflicts and are not intended to be abbreviations of a language name. When the name of a language is changed in the list, the original code is generally retained. The codes in this list are equivalent to those of ISO 639-2 (Bibliographic) codes and some codes from ISO 639-5, although the language name labels may differ. They are linked to the equivalent codes in ISO 639-2 and ISO 639-5 and the corresponding two-character codes in ISO 639-1. The list contains over 480 discrete codes. It is also searchable at: MARC Code List for Languages."^^ . . . . "UP" . . . "bioinformatics" . "registry" . "false"^^ . . "http://rs.tdwg.org/dwcem/$1"^^ . "ebisc" . "false"^^ . "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups"^^ . . . "animal husbandry" . "Catalogue of Life in Taiwan" . . . "http://sweetontology.net/stateRoleGeographic/$1"^^ . "37af84f2-bfd7-4653-b608-eaff44febba6"^^ . . . "MGI" . "medicine" . "This vocabulary defines education levels for pre-kindergarten through grade 12 for the United States. It also defines general categories for post-secondary education (vocational, professional and life-long learning)."^^ . . "Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]"^^ . "life science" . . "obo" . . . . . . "NASA Open Science Data Repository Study" . "SWEET Ontology Material Energy" . "https://www.isrctn.com/"^^ . . . . . "MultiCellDS" . "civic.source" . "A website containing information about rare diseases, powered by Wordpress."^^ . . . . . "GitLab" . . "^\\d{7}$"^^ . . "Describes the level of proficiency of an individual in a natural language."^^ . . . "http://purl.obolibrary.org/obo/TRANS_"^^ . "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id="^^ . . "https://www.sharkipedia.org/species/$1"^^ . . . "microbiome" . "https://www.alzforum.org/mutations/"^^ . . . "mouse" . . . . . "^CFc\\d{9}$"^^ . . . . . . . . . . . . "molecular infection biology" . . "systems biology" . . . . . "^\\d{7}$"^^ . . . . . "^AS\\d{6}$"^^ . . "ontology" . . "false"^^ . . . "medicine" . . "^\\d{7}$"^^ . . "vsdb" . . "w3c rec" . "ontology" . "false"^^ . . . "cohesindb.gene" . . . "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures."^^ . "http://biocyc.org/getid?id=$1"^^ . "Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip."^^ . "Shoshana J. Wodak" . "https://bioregistry.io/spike.map:"^^ . _:N35403ff182ae4c6884569cf29a11770c . "UniProt provides proteome sets of proteins whose genomes have been completely sequenced."^^ . "http://sweetontology.net/phenOceanCoastal/$1"^^ . . . . . "ohmi" . . . . "true"^^ . . "treehub" . . "http://purl.obolibrary.org/obo/ICO_$1"^^ . . . "PLOSTHES" . . . . . . . . "genome" . . . . "Abdomen"^^ . . . "https://www.nextprot.org/db/entry/"^^ . "ctd.disease" . . . . . . "^\\d{1,5}$"^^ . "false"^^ . . . "^\\d{6}$"^^ . "realm" . . "homd.seq" . . . . "http://purl.org/ejp-rd/vocabulary/$1"^^ . . . "structure" . . "https://bioregistry.io/$1:$2" . . . . . . . . . . "The GESAH Graphic Arts Ontology is designed for the inventory, classification and structured description of works on paper."^^ . "haendel@ohsu.edu" . "unists" . "DB-0174" . . . . . "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?$"^^ . . . . "nfdi4ing" . "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information."^^ . . . . . "obo" . "genepio" . "https://mmp.sfb.uit.no/databases/mardb/#/records/$1"^^ . "Odor Molecules DataBase" . . "diagnosis" . . . "biology" . "ontology" . "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles."^^ . . "muamith@utmb.edu" . "^\\d{7}$"^^ . . . . . "http://sweetontology.net/propTime/"^^ . . . "dqv" . . . . "alzforum.mutation" . . . . . "https://www.chemspider.com/search?params="^^ . . . "^\\d+$"^^ . . . "http://sweetontology.net/phenGeol/$1"^^ . . . . "averageOver"^^ . "ontology" . . . . "realm" . . . "http://ddinter.scbdd.com/ddinter/drug-detail/$1"^^ . "false"^^ . . . . "false"^^ . . . . . "https://www.chemfont.ca/chemicals/"^^ . "^\\d+$"^^ . . "http://opendata.inra.fr/ATOL/ATOL_$1"^^ . . "https://github.com/biolink/biolink-model" . "Ian Foster" . "representation time" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Function"^^ . . . "false"^^ . "http://purl.obolibrary.org/obo/HANCESTRO_"^^ . . "ontology" . . . . . . . . . . . . . . "allergome" . . . . "CALIPHO Group Ontology of Human Anatomy" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Geomorphology"^^ . . . . "The COVID-19 Infectious Disease Ontology" . "sophpc" . . . "http://getentry.ddbj.nig.ac.jp/getentry/dad/"^^ . . "The Food Ontology" . . "true"^^ . "false"^^ . . . . . "false"^^ . "life science" . . "mechanical engineering, energy technology" . . . . . . . "chris.ponting@ed.ac.uk" . "person" . . . . . "life science" . . . . . . "Concepts for encoding bibliometric information"^^ . . . . . "^m\\w+$"^^ . "http://purl.org/ieee1872-owl/cora"^^ . . . "Administrative"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Coastal"^^ . . "false"^^ . . . . "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession."^^ . . . . "interaction" . . . . . . . "REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs)."^^ . "The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to individual chemicals."^^ . . . . "false"^^ . . . . . "HMDB00001"^^ . . . "Egon Willighagen" . "https://www.ebi.ac.uk/pdbsum/$1"^^ . "smc.source" . . . . . "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . "^NPC\\d+$"^^ . . "false"^^ . "cell" . . . . "embryonic stem cell line" . "chemistry" . . . . "DUO is an ontology which represent data use conditions."^^ . . "CL000025"^^ . . "pancreatic islet development" . . "microscopy" . "https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1"^^ . . "data identity and mapping" . . . . "nfdi4ing" . . . "^\\d{7}$"^^ . . "https://purl.dataone.org/odo/SASAP_"^^ . "sweet.mas" . . . "https://signor.uniroma2.it/relation_result.php?id=$1"^^ . . . . "SWEET Ontology Realm Land Protected" . "ArrayGroup"^^ . . . "http://scop.berkeley.edu/sid="^^ . "open educational resources" . "reaction" . . . . "anatomy" . . . "100000000000001"^^ . . "carlosm@ebi.ac.uk" . . . "license" . . . . "An _gentle_ implementation of the Unified Foundational Ontology (UFO), which is an upper level ontology like BFO that is concerned with e.g. expressing temporal relationships between events."^^ . . "ontology" . "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"^^ . "http://psb.kobic.re.kr/STAP/refinement1/result.php?search="^^ . . "http://opendata.inra.fr/ATOL/ATOL_"^^ . "http://gmd.mpimp-golm.mpg.de/Spectrums/"^^ . . . "MaRDI Collection" . "false"^^ . "obo" . . . "false"^^ . "tokue" . "colderThan"^^ . "false"^^ . "facebase" . . . "cst.antibody" . . . . . . . . . "Novus Biologicals" . "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1"^^ . "wos" . . "enviPath" . "false"^^ . . . . . . "https://data.chembiosys.de/data_files/$1"^^ . "https://bioregistry.io/metaregistry/cellosaurus/"^^ . . . . "An experimental run, served thrugh the ENA"^^ . . "false"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State System"^^ . . "iceberg.ice" . . . "http://purl.dataone.org/odo/SENSO_"^^ . "compartment" . "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac="^^ . "http://sweetontology.net/propSpaceMultidimensional/$1"^^ . "RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database."^^ . . . . "https://graphics.endlessforms.info/unit?id=$1"^^ . . "This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research. "^^ . . "IUPHAR_LIGAND_ID" . . . . . "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." . . . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues."^^ . . "tib.hpont" . . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE" . "pieter.mestdagh@ugent.be" . . . . . "false"^^ . . . . "jcggdb" . "ontology" . . . "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier."^^ . . "gene family" . . "ontology" . "http://purl.obolibrary.org/obo/BFO_$1"^^ . . "E-MTAB-2037"^^ . . "http://spdx.org/rdf/terms#$1"^^ . . "https://deims.org/taxonomy/term/"^^ . "karel.berka@upol.cz" . . . . "https://registry.identifiers.org/registry?query=MIR:$1"^^ . "larvae" . . "gateway" . . . . . . . . . . "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace."^^ . . "gc_id" . "genetics" . . "reagent" . "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$"^^ . "genome" . "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities."^^ . . . . "inhand" . "nucleotide" . "https://www.webofscience.com/wos/author/record/$1"^^ . "^\\d+$"^^ . . "https://bioregistry.io/cubedb:"^^ . . . "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster."^^ . . . "A concept scheme that defines the predominate interact mode of the learning resource being described."^^ . . . . . . . . "sweet.repsp" . . . "mcro" . . . "http://www.pharmgkb.org/drug/"^^ . . . "IUPHAR_GPCR" . "http://purl.obolibrary.org/obo/TAXRANK_$1"^^ . "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships."^^ . . "Life cycle stages for Medaka"^^ . . . . . . "drugbank.metabolite" . . . . "false"^^ . . "KIM Education Level" . . "0000411"^^ . "void" . "rgd" . . . "This ontology is designed to support data search, retrieval and information identification in the EJP-RD catalogs which covers the registries and biobanks for rare diseases. (from repository)"^^ . . . "false"^^ . "Machine-readable Cataloging (MARC) List for Languages" . "ASKEM Epidemiology Prefixes" . "http://www.w3.org/ns/oa#$1"^^ . . "http://sweetontology.net/propDiffusivity/$1"^^ . . "gnome" . . . "^CL\\d+$"^^ . . "Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific."^^ . "educational resource" . . . "nfdi4cat" . . "victorinolavida@ciencias.unam.mx" . . _:N0355073af05342b5a3ec070f656de831 "Natalie L Catlett" . . "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails."^^ . . "https://eol.org/pages/$1"^^ . "agriculture" . "6b1"^^ . "http://www.jstor.org/stable/"^^ . . . . . . "dwelter.ontologist@gmail.com" . "^[1-9]\\d*$"^^ . . . . . . "state role biological" . . "SIDM01262"^^ . "cell biology" . "ontology" . . . . "https://www.ebi.ac.uk/ega/studies/$1"^^ . "http://purl.obolibrary.org/obo/MICRO_"^^ . . . . . "biology" . . . . . . "chemistry" . . . . . . . . . . . . . "VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration."^^ . "fair data spaces" . . "anatomy" . . . "sweet.repdsg" . . "This ontology extends the SAREF ontology for the Agricultural domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Agricultural domain."^^ . . . "obo" . "adenovirus" . . "JRC Data Catalogue" . . . "life science" . . "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code="^^ . . "false"^^ . "^[A-Za-z0-9]+$"^^ . "C6155"^^ . . . . "virology" . "http://www.w3.org/ns/ssn/$1"^^ . . . . . "http://purl.obolibrary.org/obo/MRO_"^^ . "http://data.food.gov.uk/codes/foodtype/id/$1"^^ . "sorelpr" . "TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here.."^^ . "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome."^^ . . . "Educational Context" . . . . . . "vaccine" . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME"^^ . . . "^\\d{4}$"^^ . "realm" . "diapriid@gmail.com" . . . . "neurobiology" . "gpml" . "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected."^^ . . . . "reproduceme" . . . "An ontology of the Retail Energy Market of Great Britain created by Lidcast Data Limited."^^ . "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis."^^ . "vfdb.genus" . "functional genomics" . "RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. "^^ . "This resource provides identifiers for listed hazardous wastes which are substances explicitly identified due to their potential harm to human health and the environment. These are categorized into four groups (F, K, P, and U) based on specific criteria, such as their source or inherent properties."^^ . . . "ConoServer" . . . "https://purl.dataone.org/odo/ADCAD_$1"^^ . . . . "data management" . . . . . . "false"^^ . . . "DockerHub User" . . "Be"^^ . . . "grouping" . . . . "https://nmrxiv.org/sample/"^^ . . . . "genetically modified pig" . . . . "https://biocomputeobject.org/BCO_$1"^^ . "AmphibiaWeb Species ID" . "database management" . . . "metabolomics" . . . "http://sweetontology.net/realmHydro/"^^ . . . . "classification" . "shsh" . "protein" . "Allotrope"^^ . . "binary" . "Petra Fey" . "systems biology" . . "engineering" . . . . . "^\\d{7}$"^^ . "disease" . . "http://www.w3id.org/Concept/Ontology/COnDO#$1"^^ . . . . "https://data.chembiosys.de/institutions/$1"^^ . "Vitis ontology" . . . . "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. "^^ . . . . "structure" . . . . "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId="^^ . . . "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived."^^ . . . . "http://purl.obolibrary.org/obo/HsapDv_$1"^^ . . . . "http://purl.obolibrary.org/obo/CMF_$1"^^ . . . "^NOR\\d+$"^^ . . "gqzhang@sinh.ac.cn" . . . "http://sweetontology.net/repr/$1"^^ . . "matrixdb" . . . . . . . "^\\d+$"^^ . "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG"^^ . "electronic health record" . . . "http://purl.bioontology.org/ontology/CSP/"^^ . . "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community."^^ . . . "omics" . "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions."^^ . . . . "arXiv" . . "sopropti" . . . . . . . . "Circular double stranded DNA sequences composed" . . "tricdb" . "earth sciences" . "biomedical science" . . . "civil engineering" . "^\\d+$"^^ . . "https://mediadive.dsmz.de/ingredients/"^^ . . "gene" . "person" . "phenomena" . . "structure" . "vaccine" . "http://purl.obolibrary.org/obo/chiro#"^^ . "nfdi4ing" . "^\\d+$"^^ . . . . . . . . . _:N208eb77407084256acd094a68a820313 "Laura Molloy" . "vbo" . . . . "open educational resources" . . "sostst" . "data retrieval" . . . "personalized medicine" . "SWEET Ontology State Realm" . "sorepmfo" . "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . . . "model"^^ . . . . . . . "opmi" . "chemical" . . . "domain" . . "https://proteinensemble.org/"^^ . . "K"^^ . . "obo" . "solid" . "https://nfdi.fiz-karlsruhe.de/nfdi4dso/$1"^^ . "Scopus Work" . "nfdi4chem" . "^\\d+$"^^ . . . "http://sweetontology.net/stateDataProcessing/"^^ . "knowledge representation" . "proteomics" . "The Scientific Event Ontology (SEO) is a reference ontology for modeling data about scientific events such as conferences, symposioums, and workshops."^^ . "^\\d{7}$"^^ . "^PMC\\d+(\\.\\d+)?$"^^ . "davidos@ebi.ac.uk" . . "The tribAIn1 ontology aims to formalize knowledge gained from tribological experiments for reuse, comparison and documentation. Therefore, the tribAin ontology provides concepts for the specification of methodological background knowledge of experimental design, the documentation of the experimental setup and the representation of different kinds of results (e.g. measurements series, analysis, interpretation in natural-language). Using the EXPO2 (ontology of scientific experiments) as basis, gives tribAIn a generic background about scientific experimental design, methodology and results representation."^^ . . . "taxon" . "ND50028"^^ . . . "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1"^^ . . . "ontology" . . "http://purl.obolibrary.org/obo/VSMO_$1"^^ . . "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^ . . "http://www.peptideatlas.org/PASS/"^^ . "nanoparticle" . "regulation" . . . . . . "WiCell Research Institute Cell Collection" . . "classification" . "sweet.stsc" . . . "true"^^ . . . "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$"^^ . . . . "http://exac.broadinstitute.org/gene/"^^ . "https://bcrj.org.br/pesquisa/?search=$1"^^ . . "gianni.cesareni@torvergata.it" . "bioinformatics" . "metadata" . "molecular entity" . . . . . . "biochemistry" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space"^^ . . . . . . "yid" . . . . . . . "agronomy" . . "^\\d{7}$"^^ . "0016"^^ . "identifier of a compound in the UniChem database"^^ . . "Human Unidentified Gene-Encoded" . . "false"^^ . "false"^^ . . . "clinical studies" . . . . "8639.1"^^ . "http://purl.obolibrary.org/obo/kestrelo_$1"^^ . . . . "hoelzel" . "state ordinal" . "https://dini-ag-kim.github.io/amb/20231019/#"^^ . . . . "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N"^^ . . "mixing" . . "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid="^^ . . "438782"^^ . . "CATH superfamily" . "life science" . . . "fine arts" . . . . . . . "Jeffrey A. Detras" . . . "genetic disorder" . . "http://sweetontology.net/reprSciFunction/$1"^^ . . "http://sweetontology.net/propIndex/$1"^^ . "lozana.rossenova@tib.eu" . . . . . . . . . . . "false"^^ . . "UPLOC" . . . . "Bong Hyun Sung" . . . "53504"^^ . "model organism database" . . "https://swbiodiversity.org/seinet/taxa/index.php?taxon="^^ . . . "https://www.wikidata.org" . . . . . . "eroshkin@burnham.org" . "info@daniel-marschall.de" . "^ML\\w+$"^^ . . . . "cancer" . . "https://modeldb.science/$1"^^ . . . . "cc.legacy" . . . . . "MediaDive Solution" . . "ChemBioSys Model" . . . "nfdi4ing" . "http://purl.obolibrary.org/obo/CHEMINF_"^^ . . "MimoDB" . "NEPOMUK Contact Ontology describes contact information, common in many places on the desktop. It evolved from the VCARD specification (RFC 2426) and has been inspired by the Vcard Ontology by Renato Ianella. The scope of NCO is much broader though. This document gives an overview of the classes, properties and intended use cases of the NCO ontology. (from homepage)"^^ . . . "1"^^ . "ontology" . . . "https://lobid.org/gnd/"^^ . . . . . . . . "false"^^ . . . . "phenotype" . "computer science" . . "google.patent" . . "fungi" . . "rupert.kellner@item.fraunhofer.de" . "meno" . . . . . _:N2c8e4aea88114bb68b94afad604806b2 "zimmerly@ucalgary.ca" . "An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io)."^^ . . "biosimulations" . "molecule" . . . . . "atmosphere wind" . . "false"^^ . "0000001"^^ . . . . . . . "false"^^ . . . . . . "obo" . "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1"^^ . . . . "https://dialnet.unirioja.es/servlet/libro?codigo="^^ . . "osf" . . "mutation" . . "false"^^ . . . . . "ontology" . . . . . . "interaction" . . . "http://avis.princeton.edu/pixie/viewgraph.php?graphID="^^ . . "chembl" . "plant phenotypes and traits" . . "gene" . . "Jonathan Karr" . . . . . "http://purl.obolibrary.org/obo/VIDO_"^^ . . . . . . "^[a-z]\\w+$"^^ . . "measurement systems" . "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]"^^ . "false"^^ . . . . . "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."^^ . "https://www.wormbase.org/species/c_elegans/rnai/$1"^^ . "langual" . "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Precipitation"^^ . . . "florianv/swap"^^ . . . "life sciences, biology" . . "ontology" . . . "NCT" . "http://purl.org/nexusformat/definitions/NeXusOntology#$1"^^ . . . . . . "abandrowski@ncmir.ucsd.edu" . "https://cropontology.org/rdf/CO_366:"^^ . "false"^^ . . . "soreah" . "https://mycobrowser.epfl.ch/genes/$1"^^ . . "false"^^ . . "genomics" . . . . . "SWEET Ontology Process State Change" . . . "^\\d{7}$"^^ . "classification" . . . "https://purl.org/sms-ontology#$1"^^ . "chemistry" . "Michael Witt" . . . . . . . "ISO 3166-1 alpha-2 country codes and names."^^ . . . . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs."^^ . "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"^^ . . . "botany" . "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId="^^ . . . . . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$"^^ . . . . . . "Collection"^^ . . "Joanne Kamens" . . "ICD 11 Codes" . . . "protein" . . . . . . . . . . "http://www.w3.org/ns/sosa/$1"^^ . "Identifiers represent antimicrobial peptides in the Database of Antimicrobial Peptides (dbAMP) which is an open-access, manually curated database of antimicrobial peptides (AMPs)."^^ . "botany" . . "http://purl.obolibrary.org/obo/SOPHARM_$1"^^ . . . "The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]"^^ . . "ChEBI Data Sources" . "f665230-5267"^^ . . . . "false"^^ . "corum" . "sorepmg" . . . . . "Data Model Language Controlled Vocabulary" . "00620027"^^ . . . . . "development" . . . "Erik Segerdell" . . "https://nmrxiv.org/spectra?compound="^^ . . . . . . . . "SWEET Ontology Property Space Direction" . . . . . "SAGE Social Science Thesaurus" . "Semantically-Interlinked Online Communities Actions Ontology" . "BRIP1"^^ . . . "TRD00001"^^ . . . . . "Antibiotic Resistance Genes Database" . "false"^^ . . . . . . "http://mirbase.org/cgi-bin/mature.pl?mature_acc="^^ . "Identifier for a journal article in the fossilworks website"^^ . . "ProteomicsDB Protein" . "^CPX-[0-9]+$"^^ . "cognitive neuroscience" . . . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results."^^ . . . . "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations."^^ . . . . . "Arc"^^ . "relationships" . . "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1"^^ . . "https://mirgenedb.org/browse?qtype=mgid&org=ALL&query="^^ . . "false"^^ . "aBq"^^ . "P53350"^^ . . . . . . . . "OrthoDB" . . . "UMLSSG" . . . "NIF Standard Ontology: Molecules" . . . . "false"^^ . . "itmctr" . . . . . "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium."^^ . "https://cropontology.org/rdf/CO_343:$1"^^ . . "https://suprabank.org/solvents/"^^ . "http://w3id.org/openeduhub/vocabs/educationalLevel/$1"^^ . . . "HUGO Gene Nomenclature Committee" . . . . . . . "protein" . . "false"^^ . . "false"^^ . . "https://mobidb.org/$1"^^ . . . . "false"^^ . . . . . . . "false"^^ . "ClinVar Submission" . "http://wodaklab.org/iRefWeb/interaction/show/"^^ . . "project" . . "getty.tgn" . "Salk Institute for Biological Studies" . . . "social science" . "chemical structure image" . "https://ordb.biotech.ttu.edu/OdorDB/Data/"^^ . "Information for ligands in the BRENDA database."^^ . . . "https://vac.niaid.nih.gov/view?id="^^ . "KEGG Reaction Class" . "medicine" . . . . . . . . . . "knowledge and information systems" . "^\\d{7}$"^^ . . . . "https://mmp.sfb.uit.no/databases/marcat/#/records/"^^ . . . . . . . . . . "false"^^ . . . "https://www.ebi.ac.uk/metagenomics/studies/"^^ . "Modern Science Ontology (ModSci), for modeling relationships between modern science branches and related entities, such as scientific discoveries, phenomena, renowned scientists, instruments, etc. ModSci is an upper ontology that provides a unifying framework for the various domain ontologies that make up the Science Knowledge Graph Ontology Suite. The Systematic Approach for Building Ontologies (SABiO) has been followed in the development of ModSci. ModSci is a poly-hierarchical ontology that can be utilized in semantic web applications. ModSci powers two projects for semantically representing scholarly information: Open Research Knowledge Graph (for the categorization of research papers) and OpenResearch.org (for the categorization of the information about scientific events, research projects, scientific papers, publishers, and journals)."^^ . . . . . . . . "https://www.pombase.org/gene/"^^ . "http://sweetontology.net/realmLandProtected/$1"^^ . . "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links."^^ . "computational biology" . "Maciej Antczak" . . . "http://multicellds.org/MultiCellDB/"^^ . "1968"^^ . . . "Ontology for Nutritional Studies" . . . . . . "https://amphibiaweb.org/species/$1"^^ . "false"^^ . "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences."^^ . . "strain" . "http://purl.obolibrary.org/obo/PAO_"^^ . "Andrew G. McArthur" . . . . . . . "false"^^ . . . . "nextprot.family" . "0000041"^^ . . . . . "Coefficient"^^ . . "BridgeDb Vocabulary" . "n2t" . . . . . . . "ClinVar Variation" . . "nicolas.matentzoglu@gmail.com" . "Leigh Carmody" . . . "fplx" . . . "http://purl.obolibrary.org/obo/SPD_"^^ . . . . . "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information."^^ . "bioinformatics" . "CA981206459"^^ . . "^\\d+$"^^ . . . . . "peteremidford@yahoo.com" . . "https://data.chembiosys.de/publications/$1"^^ . "https://www.genenames.org/cgi-bin/genefamilies/set/"^^ . . "merriam_webster" . "Darren A. Natale" . "Types used in WikiPathways RDF"^^ . . "fid move" . "cell lines" . . . . . . . . . . . . . "false"^^ . . . . "https://www.sharkipedia.org/trends/"^^ . . . "http://sweetontology.net/realmBiolBiome/$1"^^ . "John-Marc Chandonia" . . "iedb.epitope" . "Clement Jonquet" . . "ddi.numerictype" . . "obo" . . "bioinformatics" . "mesh" . "https://covid19.sfb.uit.no/api/records/"^^ . . . "r.court@ed.ac.uk" . "disease" . "regulation of gene expression" . . "Wildlife Monitoring Ontology" . "gesis.variables-relations" . . "scopus.eid" . . "false"^^ . "genomics" . "SWEET Ontology Realm Region" . . "https://www.clinicaltrialsregister.eu/ctr-search/search?query="^^ . . . "DBCOND0066902"^^ . . . "http://iirds.tekom.de/iirds/domain/machinery#"^^ . "false"^^ . . . "0000184"^^ . "http://emmo.info/emmo/cif-core#$1"^^ . . . "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"."^^ . "van_slyke@zfin.org" . . . "geogeo" . . . . "10531"^^ . . . . . "http://purl.obolibrary.org/obo/BTO_$1"^^ . . . "ddanat" . "false"^^ . . . "Bloomington Drosophila Stock Center" . . . . . . "engineering" . "sfEquals"^^ . "^[a-z0-9\\_]+$"^^ . . . . . . . "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl."^^ . "false"^^ . "bibliometrics" . . "Benchmark Energy & Geometry Database" . . "https://tree.opentreeoflife.org/taxonomy/browse?id="^^ . . "greatchen@cdutcm.edu.cn" . . "The international standard for identifying health measurements, observations, and documents."^^ . "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles"^^ . . "An ontology to represent genomics cohort attributes."^^ . . "Account"^^ . . . . "FR-FCM-ZYGW"^^ . . "false"^^ . "https://precision.fda.gov/uniisearch/srs/unii/$1"^^ . . "Andreas Ruepp" . . . "61467"^^ . "http://sweetontology.net/propEnergyFlux/"^^ . . . . . "^PR[0-9]{6}$"^^ . . "s4auto" . . . . . . . . "Sequencing Initiative Suomi" . . . . . . . "https://gnomad.broadinstitute.org/variant/"^^ . . . . "CLV_MEL_PAP_1"^^ . . "^\\d+$"^^ . . "false"^^ . . . . "FINDEX Raum" . . "HGVST1828"^^ . . . . . "data set" . . . . . "http://sweetontology.net/realmEarthReference/$1"^^ . . . . . "http://sweetontology.net/relaSci/"^^ . . . . . . "life science" . . . . "Zhang Zhang" . "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia' prefix is used for phenes, either across species (omia:001000) or in a specific species (omia:001000-9615)"^^ . . . . "CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making."^^ . . "https://uts.nlm.nih.gov/uts/umls/vocabulary/MTH/$1"^^ . . "SAREF4SYST: an extension of SAREF for typology of systems and their inter-connections" . "worldavatar.compchem" . "plant phenotypes and traits" . "false"^^ . "Phy000CLXM_RAT"^^ . . . . "^\\w+$"^^ . "http://purl.obolibrary.org/obo/MF_$1"^^ . "genedb" . "co_326" . . "autdb" . . . "giardiadb" . . . . . . . . . . . . "infosecsos" . "http://uri.neuinfo.org/nif/nifstd/nlx_cell_"^^ . "health science" . "The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics."^^ . "https://sargon-n5geh.netlify.app/ontology/1.0/object_properties/$1"^^ . . "The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research)."^^ . "true"^^ . "00056"^^ . . . . "^\\d+$"^^ . . . . "false"^^ . . "ZINC is not Commercial" . . "http://sweetontology.net/realmLandAeolian/$1"^^ . . . . . . . . "variation" . . . "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease."^^ . . . . . "storedb.dataset" . "https://comptox.epa.gov/dashboard/"^^ . "Identifiers.org Ontology" . "epidemiology" . "nmrxiv.project" . . "ird.segment" . "UniProt Chain" . "clarin.clavas" . "s_mart_db" . . . "protein" . . "2005080"^^ . "Degree of Establishment Controlled Vocabulary" . . . . "0000630"^^ . . . . "phenomena" . . "false"^^ . "kwsm@dbcls.rois.ac.jp" . . . . "^\\d{1,7}\\-\\d{2}\\-\\d$"^^ . . "matthias.samwald@meduniwien.ac.at" . . . . "computer science" . . . . . "srao" . "Dalia Alghamdi" . "false"^^ . . . . "3"^^ . "http://purl.obolibrary.org/obo/EPO_"^^ . . "Reproductive and behavioural traits of both adult and larval stages, as well as information on environmental preferences and a few morphological traits."^^ . . . "imaging" . "https://id.loc.gov/vocabulary/relators/"^^ . . . . . . . . . . . "biochemistry" . "disease" . "Chemical Component Dictionary" . "pirsf" . . . "aireland@lbl.gov" . . "bioinformatics" . "cell biology" . . "https://vocabularies.cessda.eu/vocabulary/TypeOfConceptGroup?lang=en#code_$1"^^ . . "19"^^ . "biomedical science" . . "Clinical Trial Registries" . . . . . . "ddi.generaldataformat" . "ontology" . "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)."^^ . "http://sweetontology.net/phenWave/$1"^^ . "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms."^^ . "authorea.author" . "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015"^^ . . "The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species."^^ . . "https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:"^^ . . "https://saref.etsi.org/saref4envi/"^^ . "unii" . . . . . "nfdi4ing" . "^\\d+$"^^ . "AP011135"^^ . "v001"^^ . "false"^^ . . . . . "karr@mssm.edu" . "https://www.cameo3d.org/sp/targets/target/$1"^^ . "Roman Laskowski" . . "Raimond Winslow" . . . "http://lincsportal.ccs.miami.edu/cells/#/view/$1"^^ . "representation scientific function" . . . . . . . . . "ppr" . "ontoavida" . "http://purl.obolibrary.org/obo/OGMS_$1"^^ . "^(5?)\\d{7}$"^^ . . . "life sciences, biology" . "Mouse Developmental Anatomy Ontology" . "^nbdc\\d+$"^^ . "obo" . . . "ontology" . . . "0061106995455595"^^ . "http://purl.obolibrary.org/obo/EMPTY_"^^ . . "Algae"^^ . . "SWEET Ontology Realm Land Aeolian" . "^fdd\\d+$"^^ . . . "small molecule" . "MMP02954345.1"^^ . . . "ontology" . "phylogeny" . . . "MPATH" . . . . "^\\d{7}$"^^ . "ProtoNet ProteinCard" . . . . . . "iresite" . . . "http://sweetontology.net/stateRoleChemical/$1"^^ . "AffectedCommercialFlow"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Transport"^^ . "ontology" . "http://purl.obolibrary.org/obo/PROCO_$1"^^ . . "A controlled vocabulary to support the study of transcription in the primate brain"^^ . . "BioLegend is a life sciences supply vendor."^^ . . . . . "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences."^^ . . . . . . "dataplant" . . "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology."^^ . . . . . "ASPL0000349247"^^ . . "uniprot.kw" . "Multum MediSource Lexicon" . . . "h_aktPathway"^^ . . "^\\d+$"^^ . . "^([0-9A-F]{4}-){2}[0-9A-F]{4}$"^^ . "https://bioregistry.io/chemicalbook:"^^ . . "Luis A. Gonzalez-Montana" . "ontology" . "https://www.ebi.ac.uk/thornton-srv/m-csa/search/?s=$1"^^ . "life cycle stage" . "false"^^ . . . "false"^^ . . . . . . "cell lines" . "^\\d{7}$"^^ . "http://www.jcvi.org/charprotdb/index.cgi/view/"^^ . . . "Assertion"^^ . . "http://purl.bioontology.org/ontology/SNOMEDCT/$1"^^ . "http://purl.obolibrary.org/obo/IDO_$1"^^ . "00000085"^^ . . . . . "false"^^ . . . "2afacf00-9a1d-4d80-8c32-69d3923d3913"^^ . "The pre-IND tracking number for submissions to the FDA"^^ . . . "^\\d{7}$"^^ . . . "Paragraph"^^ . . "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$"^^ . "food" . . "vuid" . . "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids."^^ . "ontology" . . . . "false"^^ . . . . . . . "disease" . . . . . . "nlx.cell" . . . . . . "biochemistry" . . . "life cycle" . "Identifiers for product types (product, price, and company data) based on Wikipedia"^^ . . "https://purl.brain-bican.org/ontology/dhbao/DHBA_"^^ . "https://bioregistry.io/treebase:"^^ . . . "education level" . "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders."^^ . . . "https://pmb-bordeaux.fr/maggot/metadata/"^^ . "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1"^^ . . . . "small molecule" . . . . . . . . "http://purl.obolibrary.org/obo/TO_"^^ . "false"^^ . . "16941567"^^ . . . "Physico-chemical methods and properties" . . "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . "PDBeChem" . . . . "tcb" . "0007404"^^ . "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls."^^ . . "christian.hauschke@tib.eu" . "false"^^ . "The Peruvian Clinical Trials Registry - REPEC is a non-profit online information system developed in 2007 by INS. It is a publicly accessible prospective registry aimed at providing information about clinical trials underway in Peru. REPEC also includes Registries for Trial Sites, Institutional Research Ethics Committees, Sponsors and Contract Research Organizations. REPEC contains records of clinical trials since 1995. Since December 14, 2012, the Peruvian National Institute of Health, by means of the General Office for Research and Technological Transfer (OGITT), has started a process to improve REPEC and to join the WHO International Clinical Trials Registry Platform (ICTRP) and to be acknowledged as a Primary Registry. More information about primary registries is available in ICRTP at http://apps.who.int/trialsearch/. (from website)"^^ . "false"^^ . . . "dataplant" . "TransportDB" . "436154da-bcf1-4130-9c8b-120ff9a888f2"^^ . "SNOWMEDCT_US" . . . "mgiglio@som.umaryland.edu" . "gene" . "false"^^ . . . "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1"^^ . . . . . . "false"^^ . . "Pierre-Alain Binz" . "true"^^ . . "chemical" . . "http://purl.obolibrary.org/obo/OMRSE_"^^ . "PANTHER Node" . "apd" . "false"^^ . "false"^^ . . . "http://aps.unmc.edu/AP/database/query_output.php?ID=$1"^^ . . . . . . . "http://purl.obolibrary.org/obo/KISAO_"^^ . "http://purl.obolibrary.org/obo/MOP_$1"^^ . "ontology" . . "Informed Consent Ontology" . . . . . . "This ontology describes the car's attributes, branches and signals defined in the Vehicle Signal Specification."^^ . . . . . . . . . . . . . . "OBO in OWL" . . . . . "http://sweetontology.net/propSpeed/"^^ . "https://molbic.idrblab.net/data/cellline/details/$1"^^ . . . "Human BioMolecular Atlas Program Donor" . . . "biodiversity" . "https://github.com/geneontology/go-ontology/issues/"^^ . "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1"^^ . . "true"^^ . "0000029"^^ . . "Reece Hart" . . . "http://www.kegg.jp/entry/"^^ . "sample annotation" . "The FAO Statistics Team (NFISS) of Fisheries and Aquaculture Division collates world capture and aquaculture production statistics at either the species, genus, family, or higher taxonomic levels in 3,169 statistical categories (2022 data release) referred to as species items. ASFIS list of species includes 13,417 species items selected according to their interest or relation to fisheries and aquaculture. For each species item stored in a record, codes (ISSCAAP group, taxonomic and 3-alpha) and taxonomic information (scientific name, author(s), family, and higher taxonomic classification) are provided. An English name is available for most of the records, and about one third of them have also a French and Spanish name. Information is also provided about the availability of fishery production statistics on the species item in the FAO databases. (from homepage)"^^ . . . "^\\d{7}$"^^ . "^\\d{7}$"^^ . "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby."^^ . . . . . . . . . "http://sweetontology.net/stateBiological/$1"^^ . . "GARD" . "epidemiology" . "clinvar.submitter" . "http://sweetontology.net/phenBiol/"^^ . "This vocabulary is intended to provide a flexible framework within different usage scenarios to semantically represent any type of content, be it on the Web or in local storage media. For example, it can be used by web quality assurance tools such as web accessibility evaluation tools to record a representation of the assessed web content, including text, images, or other types of formats. In many cases, it can be used together with HTTP Vocabulary in RDF 1.0, which allows quality assurance tools to record the HTTP headers that have been exchanged between a client and a server. This is particularly useful for quality assurance testing, conformance claims, and reporting languages like the W3C Evaluation And Report Language (EARL). [from homepage]"^^ . . . . "genomics" . "registry" . . . . "ricenetdb.compound" . "true"^^ . "Mention Typing Ontology" . "ontology" . . "Canadian Drug Product Database" . . . . . "false"^^ . . . "Biomedical Informatics Research Network Lexicon" . . "Une ontologie \"historique\" utilisée par l'outil en ligne de commande cwm, au temps des balbutiements du web sémantique (~ 2000 - 2003 ?)"^^ . "yeastintron" . . . "mass spectrometry assay" . "biology" . "^\\d{5}$"^^ . . . . "https://endlessforms.info/graphics/$1"^^ . . "https://www.e-cyanobacterium.org/bcs/entity/"^^ . . . "ontology" . . "occupational medicine" . "http://purl.org/ontology/rec/core#$1"^^ . . . . . "data retrieval" . . "edcc" . . . "https://neurovault.org/images/"^^ . "https://credit.niso.org/contributor-roles/$1"^^ . "The HuBMAP dataset collection provides high resolution molecular data from human tissues, with unique identifiers that enable tracking, citation, and integration of datasets across diverse assay types and donor samples for biomedical research."^^ . . . "https://ieeexplore.ieee.org/document/"^^ . . . "gene" . "Agronomy Ontology" . "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field."^^ . . . . . "^\\d+$"^^ . . "^GCST\\d{6}\\d*$"^^ . . . . . "AADB12"^^ . "sostsy" . . "subject agnostic" . . . "An issue on the UBERON GitHub Issue tracker"^^ . "false"^^ . "http://eurovoc.europa.eu/"^^ . "https://lattes.cnpq.br/$1"^^ . . "obo" . "Identifiers for biospecimens used in experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . "http://purl.org/dcx/lrmi-terms/"^^ . . "VIRsiRNA" . . . . "suprabank.solvent" . . "T00232742"^^ . . "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:"^^ . "http://purl.obolibrary.org/obo/ONTONEO_"^^ . . "5601141"^^ . . . . . "chemistry" . . . . . "systems biology" . "sophhe" . . . . . "metabolomics" . "0003003"^^ . . . "ega" . . . . "false"^^ . "sequence" . . . . "sostrg" . . . "Generative Artificial Intelligence Delegation Taxonomy" . "Banana ontology" . "genome" . . . . . "https://drks.de/search/en/trial/"^^ . . . "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands."^^ . . . "ontology" . "false"^^ . . "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value="^^ . . . "000912"^^ . "28789"^^ . "https://vocabularies.cessda.eu/vocabulary/CESSDADataCatalogueCollections?lang=en#code_$1"^^ . "false"^^ . "false"^^ . . . "state role" . . "nfdi4ing" . "chemistry" . . "biology" . . . . "fd8d0743-344a-4758-bb97-f8ad84a37357"^^ . "0001"^^ . "chemical" . . . "false"^^ . . . . . . . . . . . . "genefarm" . . . . _:N1309e91613dc48c7a5946468759137b4 . . . . . "edam" . . . . . . . . "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc="^^ . . . "AseismicRidge"^^ . . . "https://absd.pasteur.cloud/antibody/$1"^^ . "botany" . . "Karen Eilbeck" . . "ddi.typeofaddress" . "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."^^ . . . "false"^^ . "uniprot.database" . "0000141"^^ . . "px" . . . . "decipher" . . "https://pb.apf.edu.au/phenbank/strain.html?id=$1"^^ . . . . . . . . "pfam.clan" . "ac.subtype" . "Danielle Welter" . . "^\\d{7}$"^^ . "false"^^ . "https://www.emsl.pnnl.gov/project/"^^ . "An identifier for a country in numeric format per ISO 3166-1"^^ . "pathway" . . "false"^^ . "http://purl.obolibrary.org/obo/PO_$1"^^ . . . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1"^^ . . . . "CityPark"^^ . "ontology" . . . . "health science" . . "http://sweetontology.net/matrOrganicCompound/"^^ . . "FMA_RETIRED" . "https://www.ebi.ac.uk/ols4" . "genome" . . "life science" . . "SNOMEDCT_US_2018_03_01" . . . . . . "classification" . . "The Getty Thesaurus of Geographic Names (TGN) is a structured vocabulary, including names, descriptions, and other metadata for extant and historical cities, empires, archaeological sites, and physical features important to research of art and architecture. TGN may be linked to GIS (Geographical Information System), maps, and other geographic resources. [from https://collectionstrust.org.uk/resource/thesaurus-of-geographic-names-tgn-getty/]"^^ . "ICD-O" . "http://clipserve.clip.ubc.ca/topfind/proteins/"^^ . . "Kelly T. Hughes" . . "FEMA provides identifiers for flavor ingredients deemed safe for food use. These entities include chemical compounds and natural substances used as flavoring agents, each reviewed by the FEMA Expert Panel for GRAS (Generally Recognized As Safe) status. The identifiers link to safety data and regulatory assessments, including evaluations by the U.S. FDA and, where applicable, the Joint FAO/WHO Expert Committee on Food Additives (JECFA)."^^ . . . . "Duration"^^ . "false"^^ . "https://euclinicaltrials.eu/app/#/view/$1"^^ . "Der Thesaurus enthält Vokabular zu allen ökonomischen Themenstellungen: über 6.000 Schlagwörter und über 28.000 zusätzliche Synonyme als Zugangshilfe, um individuelle Formulierungen bei der Suche aufzufangen. Auch Fachbegriffe aus benachbarten Bereichen wie z.B. Recht, Soziologie oder Politik sowie Geobegriffe sind dort zu finden. Wenn Sie Schlagwörter aus diesem Vokabular auswählen, können Sie sicher sein Treffer zu erhalten, die zu dem gewünschten Sachgebiet passen. [from homepage]"^^ . "National Organization for Rare Disorders" . . . "adverse reaction" . . . . "https://omabrowser.org/oma/hog/HOG:"^^ . . . "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank."^^ . . "^\\d{7}$"^^ . . . . . "http://scipion.i2pc.es/ontology/CRYOEM_"^^ . . . "http://purl.obolibrary.org/obo/MC_"^^ . "Peter D. Karp" . . "https://bioregistry.io/pocketome:"^^ . . . "sequence alignment" . "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1"^^ . "dev.ga4ghdos" . . "1"^^ . . . . "CAA71118.1"^^ . . "egon.willighagen@maastrichtuniversity.nl" . . "Cell line databases/resources"^^ . "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes."^^ . "CIViC Variant Group" . . . "http://purl.obolibrary.org/obo/AfPO_$1"^^ . _:Nd8d51b62facc42c9966346e1377675fb "Albert Goldfain" . "false"^^ . "false"^^ . . . . . "frim1"^^ . "life science" . . . "http://purl.obolibrary.org/obo/FBbt_$1"^^ . . . "environmental science" . . . . . "ontology" . "ttd.drug" . "Ontology to model processes"^^ . "nasaosdr.payload" . "aspgd.locus" . . . "Legacy disease classes that later became MONDO"^^ . "structure" . . . "Stacia R Engel" . . . "kupo" . . "microbiology" . . . . . . . . . . . . "StoreDB File" . . "MESHC" . "false"^^ . "false"^^ . . . "https://go.drugbank.com/bio_entities/"^^ . . . . "ical" . "Mobilome Ontology" . . "https://vocabularies.cessda.eu/vocabulary/DataSourceType?lang=en#code_$1"^^ . . "uniprot.chain" . . . "^SAM[NED](\\w)?\\d+$"^^ . . "EnergyProperty"^^ . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra."^^ . . . . "^\\d{7}$"^^ . . . . "http://purl.obolibrary.org/obo/CRO_"^^ . . . . . . . "NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999)."^^ . . . "false"^^ . "cgnc" . . . "ontology" . . . "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1"^^ . "http://sweetontology.net/matrMineral/$1"^^ . . . "bioregistry.registry" . "Plant Trait Ontology" . "metpo" . . . . "http://purl.obolibrary.org/obo/SEPIO_"^^ . . . . "metabolomics" . "false"^^ . . "Publishing Workflow Ontology" . . . . . . . . . "cell biology" . . "realm" . "^jRCT\\w?\\d+$"^^ . . "NBC00001"^^ . "structure" . "biodiversity" . "Gerald Guala" . . "transport" . . "http://uri.gbv.de/terminology/bk/"^^ . "Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation."^^ . "ChemicalBookNo" . "ontology" . "nfdi4ing" . "^\\d{7}$"^^ . . "EruptionCloud"^^ . . . . "CESSDA Persistent Identifier Types" . "medicine" . "educational resources" . . . . "VFDB Gene" . . "http://sweetontology.net/matrFacility/$1"^^ . . "false"^^ . "false"^^ . . . . . . . "CVCL" . "life science" . "NLXCHEM" . . . . "http://bigg.ucsd.edu/models/universal/reactions/"^^ . . "cho"^^ . "pancreas" . "^\\d+$"^^ . . . "TogoVar" . "https://bioregistry.io/abs:"^^ . . . . "true"^^ . . . . "Wes Schafer" . "http://purl.obolibrary.org/obo/VT_"^^ . "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein."^^ . "berman@rcsb.rutgers.edu" . . . . . . "The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can"^^ . . . "https://prefix.zazuko.com/" . "nbrc" . . . . . . . "FAIRmat Resources" . . . . "HGVM15354"^^ . . "cro" . "anatomy" . . "bioinformatics" . . . . . "sweet.phft" . "Capability"^^ . . "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments."^^ . "false"^^ . . "true"^^ . . . . "OS-27"^^ . "COG Pathways" . . . "iconclass" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Fog"^^ . "Jim Balhoff" . . "https://saref.etsi.org/saref4inma/$1"^^ . . . . . "sweet.man" . "earth science" . "sweet.propst" . "9001411"^^ . . "NCBI Genetic Code" . "false"^^ . "56"^^ . . . "https://biopragmatics.github.io/providers/sfam/$1"^^ . "Product number for the European Medicines Agency"^^ . . "The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species."^^ . "Database of Genotypes and Phenotypes" . . . . . "fungi" . "Prefixes for ontologies relevant for DAPHNE4NFDI." . "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1"^^ . "ChemBioSys Tag" . "ChemBioSys Strain" . . "A concept scheme that defines the primary or intended roles of the audience (beneficiary) of the resource being described."^^ . . "ess" . . . . . . . . "generic" . . . . . . . . "false"^^ . . "fid baudigital" . . . . . . . . "SWEET Ontology Representation Space Geometry 3D" . "^\\d{7}$"^^ . "Hugh P Shanahan" . . . . . . . . . . "^\\d+(-\\d+)?$"^^ . "researchgate.profile" . . . "https://biofactoid.org/document/"^^ . . . . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID="^^ . . "ontology" . "http://zinc15.docking.org/substances/"^^ . . . "SWEET Ontology Material Ion" . "Melek Chaouch" . "linkml" . . "6e3b1371-59d7-481a-9db4-cd0d0de98436"^^ . . . . . . . . "false"^^ . "This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)"^^ . . . "Rat Genome Database strain" . "Pfam protein clan" . . . "HD+118-001"^^ . "http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae5.owl#$1"^^ . . "carole.goble@manchester.ac.uk" . . "The Generative Artificial Intelligence Delegation Taxonomy (GAIDeT) assigns identifiers to contributor roles as an extension to the Contributor Roles Taxonomy (CRediT) to support promoting transparency and accountability in academic publishing when AI contribtors are involved in research. It is operationalized in the [GAIDeT Declaration Generator](https://panbibliotekar.github.io/gaidet-declaration/), an interactive tool for researchers to disclose the delegation of tasks to generative AI (GAI) tools in accordance with the GAIDeT taxonomy."^^ . "hannele.laivuori@helsinki.fi" . "Dictybase Gene" . . . . "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$"^^ . "cellular_component" . "rxno" . . "sonia.balyan@ibdc.rcb.res.in" . "http://sweetontology.net/realmAstroHelio/$1"^^ . . . . . . "qualityOfObservation"^^ . "adverse reaction" . "livestock" . . . . . "https://w3id.org/ac-ontology/aco#$1"^^ . "A publication in the ChemBioSys data platform"^^ . . "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases."^^ . "http://cdb.iso.org/lg/"^^ . . . . . "1374"^^ . "Alan Rubin" . . . "molecular biology" . "salk" . . . . . . . "neuroname" . . . "dalia.community" . . "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id="^^ . . "bioactivities" . . "0000590"^^ . . . "Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology" . . . "ontology" . . . "The Digital Object Identifier System is for identifying content objects in the digital environment."^^ . "evolutionary biology" . . "Tb927.8.620"^^ . "^[0-9a-f\\-]+$"^^ . . _:Nbdcd82014053430e907595550f3bcc08 "Jim Amsden" . . . . . "civic.mpid" . "https://www.fao.org/fishery/en/species/"^^ . "http://nava.liacs.nl/cgi-bin/nava.py?id=$1"^^ . . . "This CV, developed within the framework of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the central concepts and theoretical approaches in research on racism and right-wing extremism. The compilation is based on a systematic evaluation of the relevant national and international empirical research literature. The CV equally takes into account the different thematic (racism, right-wing extremism, discrimination) as well as methodological (qualitative research, standardised surveys, data from social media and messaging services) research strands."^^ . . . . . . . "true"^^ . . . . . . . . "Identifier of a taxon or synonym in the Catalogue of Life"^^ . . "false"^^ . . "^XB\\-\\w+\\-\\d+$"^^ . "chemistry" . . "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1"^^ . . . "informall" . . "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks."^^ . "^\\d+$"^^ . . . "SWEET Ontology Material Particle" . . "DI-04240"^^ . . "http://purl.org/ASN/scheme/ASNEducationLevel/$1"^^ . . . . . "false"^^ . . . "https://bioregistry.io/metaregistry/prefixcommons/$1"^^ . . "Petra C. Steiner" . . . . . . . "false"^^ . "http://iirds.tekom.de/iirds/domain/software#"^^ . . "ORCID" . "digital planning and construction" . . "genome" . . "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . "Omar Harb" . . . . . . . . . . . "https://www.ebi.ac.uk/interpro/entry/antifam/$1"^^ . . . "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region."^^ . "digital planning and construction" . . . . . . "life science" . "^[A-Z_a-z]+$"^^ . . . "michall@cc.huji.ac.il" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Day"^^ . . "francesco.vitali@ibba.cnr.it" . . "The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project."^^ . "false"^^ . "https://schema.coypu.org/ta#"^^ . . . "An ontology about scholarship"^^ . "civic.assertion" . . "Cell line collections (Providers)"^^ . . . . . . . . . "ontology" . . . . . "Developmental stages of the Zebrafish"^^ . "birgit.kersten@thuenen.de" . "agriculture" . . . . . "0000025"^^ . . "mastodon" . . . . "false"^^ . . . "Controlled vocabulary for the Dublin Core term format"^^ . "https://cropontology.org/rdf/CO_365:"^^ . "false"^^ . . "Christopher M. Overall" . "bacdive" . "lrg" . . . "B2067"^^ . . . . . . . . "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast)."^^ . . . . "europa.dcf" . . "^\\d+$"^^ . "earth sciences" . "epidemiology" . . . . . . "http://sweetontology.net/phenAtmoPrecipitation/"^^ . . "DBPedia Ontology" . . . . "SP_KW" . . . . "international relations" . . . . . "Human Reference Atlas Common Coordinate Framework Ontology" . . . "anatomy" . "^\\d{7}$"^^ . . . "false"^^ . . . "schoch2@ncbi.nlm.nih.gov" . "phenomena" . . "Digital Construction Occupancy ontology represents those aspects of construction and renovation projects that concern the comfort, safety and health of occupants, including visual and thermal comfort, indoor air quality and building acoustics, as well as related sensor observations."^^ . . . . . "https://bioregistry.io/cellbank.australia:"^^ . . "https://github.com/obophenotype/uberon/issues/"^^ . . "WormBase RNAi" . . . . "soprops" . "HemOnc.org is the largest freely available medical wiki of interventions, regimens, and general information relevant to the fields of hematology and oncology."^^ . "false"^^ . "ontology" . "https://www-is.biotoul.fr/scripts/ficheIS.php?name="^^ . . . . . . "false"^^ . . "http://edamontology.org/topic_$1"^^ . . "http://www.w3.org/2007/05/powder-s#$1"^^ . "false"^^ . . . . . "pathway" . . . . . . . . . "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric"^^ . . "https://www.ebi.ac.uk/gxa/genes/$1"^^ . "learning material" . . "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"^^ . "pseudogene" . . . . "cto" . . . _:Nf6f07c5b88f6463297e168ae78ab0aa3 . . "https://www.ebi.ac.uk/gxa/experiments/$1"^^ . . . "SWEET Ontology Phenomena Atmosphere Wind" . . . . . . _:Nd54ae059458e4258b1aeadaa33a2a031 "Harry Caufield" . . . . "taxonomic classification" . "earth sciences" . . . "http://purl.obolibrary.org/obo/LIPRO_$1"^^ . . "ASPL0000349247"^^ . "false"^^ . "chemical" . "semapv" . . "computer science" . . . . . . "true"^^ . . "https://en.wiktionary.org/wiki/"^^ . . . "sweet.phatmofo" . "ddi.typeoftelephone" . "dialnet.journal" . "https://cameochemicals.noaa.gov/chemical/$1"^^ . "^\\d+$"^^ . . "false"^^ . . "earth science" . . . . "sequence" . . . . . "biology" . "false"^^ . "Creative Commons Rights Expression Language" . "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."^^ . "OUYCCCASQSFEME-MRVPVSSYSA-N"^^ . . . . . "4195"^^ . "http://cor.esipfed.org/ont/earthcube/SFO_$1"^^ . . . "Metabolic Encyclopedia for Pathway/Genome Databases" . . . "phenomena" . "https://ontology.iedb.org/ontology/ONTIE_$1"^^ . "http://sweetontology.net/procPhysical/"^^ . . "false"^^ . . "euroscivoc.schema" . "TaxonomyID" . "genomics" . "Microbial Conditions Ontology is an ontology..."^^ . "^\\d+$"^^ . . . . . "Susan Tweedie" . . "nfdi4chem" . . . "nfdi4ing" . "^CH_\\d+$"^^ . "EUbOPEN is a project focusing on organizing chemogenic library collections, advancing chemical probe discovery, profiling bioactive compounds, and making project data more accessible."^^ . . . . "SWEET Ontology Phenomena Geologic Volcano" . . . "University hospital Medical Information Network Clinical Trial Registry" . "medicine" . . . "ncim" . "false"^^ . . . "I31.952"^^ . . . . "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/"^^ . "https://schema.coypu.org/vtf#$1"^^ . . . . . . "health science" . . . . . "false"^^ . "Alloy"^^ . "^\\d{7}$"^^ . "comparative genomics" . . "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId="^^ . "Croissant Format Specification" . . . "https://www.scopus.com/authid/detail.uri?authorId=$1"^^ . . "http://www.orpha.net/ORDO/Orphanet_$1"^^ . "^(hsa|mmu|rno|cel|dme|dre)_ribocirc[A-Za-z0-9.:]+_\\d{3}$"^^ . . . . "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information."^^ . . . . "http://sweetontology.net/stateVisibility/"^^ . . . . "SWRL enables Horn-like rules to be combined with an OWL knowledge base."^^ . "nfdi4ing" . . . . . . . . . "life science" . "2gc4"^^ . "0000027"^^ . "recombinant inbred rat" . . "RGD" . "SWEET Ontology Phenomena Hydrosphere" . . "confident.series" . . . . . . "ontology" . . . "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1"^^ . "NBR016799"^^ . "false"^^ . "false"^^ . . "phylogenomics" . "PLOS Thesaurus" . . . . . . . . . . . . . . . . "skos.xl" . "phenotype" . . "Gmelin's Handbook of Inorganic Chemistry" . . "^\\d{8}$"^^ . . "https://pubchem.ncbi.nlm.nih.gov/compound/"^^ . . "DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets."^^ . "^[A-Za-z-0-9_]+(\\@)?$"^^ . . "dwishart@ualberta.ca" . . . "0000001"^^ . "fairsharing.user" . . . . "This is the formal vocabulary (ontology) describing the FAIR principles."^^ . "false"^^ . "sioc.quote" . . "catalog" . . . "ontology" . "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers."^^ . "phenomena" . . "tib.cgo" . . "pathway" . "An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator)."^^ . "mwitt@purdue.edu" . "ons" . . "http://birdgenenames.org/cgnc/GeneReport?id=$1"^^ . "publication" . . . . . . . "ontology" . "E5.11.2.0.0.0.4"^^ . "http://www.fao.org/gsfaonline/additives/details.html?id="^^ . "true"^^ . . "protein" . "0000004"^^ . "0000002"^^ . "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog."^^ . . "clinvar.variation" . . . "protein" . "ontology" . . "life science" . . "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1"^^ . "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1"^^ . . . . "dataplant" . . . "https://cropontology.org/rdf/CO_338:"^^ . "https://w3id.org/emmo/domain/battery#battery_$1"^^ . . "0011140"^^ . "0000001"^^ . "nfdi4chem" . "battinfo" . . . "human genetics" . "phosphosite.residue" . "ESCO Skill" . . "https://www.pharmgkb.org/variant/"^^ . "https://www.re3data.org/repository/"^^ . . . . "Laboratory"^^ . "090801"^^ . . . "lorenz.reimer@dsmz.de" . "Tatsuya Kushida" . "structure" . "A RDF vocabulary for OER content on the web."^^ . . . . "http://purl.obolibrary.org/obo/MONDO_"^^ . . "MC" . . . . . . "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences."^^ . "AGROVOC" . "CoVoc Coronavirus Vocabulary" . "DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors."^^ . "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]."^^ . . "structure" . "co_327" . "http://homosaurus.org/terms/"^^ . _:N0e0ba6da09004f40b9016a291ba248d9 "World Health Organization" . . . "PREMIS 3 Ontology" . _:N328f9d2e02e44661b49297c805288f94 "Vladimir Mironov" . . . . . . . "https://www.confident-conference.org/index.php/Event:$1"^^ . . "^SIGNOR\\-[A-Z]+\\d+$"^^ . . . . "0000127"^^ . . "http://purl.obolibrary.org/obo/CLO_$1"^^ . . "alistair.miles@linacre.ox.ac.uk" . "http://www-snorna.biotoul.fr/plus.php?id=$1"^^ . "^\\w+$"^^ . . . . . . . . "http://purl.obolibrary.org/obo/ONTOAVIDA_$1"^^ . . . . . "^\\d{8}$"^^ . . . "ontology" . "Ontology for Biomarkers of Clinical Interest" . "ioio" . . . . . "false"^^ . . . "http://sweetontology.net/realmLandGlacial/$1"^^ . "Accesories"^^ . . . . "treebase" . "gudmap" . . . "91792"^^ . . . "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1"^^ . "https://biopragmatics.github.io/providers/uniprot.ptm/$1"^^ . "One of the 23 stages of embryo development"^^ . "^[A-Za-z0-9]+$"^^ . . "C. elegans ORFeome cloning project" . . "ontology" . "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models."^^ . . . . . . "life science" . "AA0001"^^ . "Japan Collection of Microorganisms" . "^\\d+$"^^ . . _:N1a2a7fdbe86048f6add6cae4bc64e9f2 "marc@geonames.org" . "4349895"^^ . "ontology" . "The initial focus of the GS1 Web Vocabulary is consumer-facing properties for clothing, shoes, food beverage/tobacco and properties common to all products. [from homepage]"^^ . . "NIF Standard Ontology: Digital Resources" . . . "caro" . . . "http://sweetontology.net/human/"^^ . "false"^^ . . "nhcdr" . . . "^\\d+$"^^ . . . . "food" . "do" . "hc.npn" . . . . "BioGRID" . "protein" . _:Ndd2c985480434017bb56876ef0717497 . "animal" . . . "ontology" . . . "cp" . . . "http://n2t.net/ark:"^^ . . "http://sweetontology.net/propPressure/$1"^^ . "The Creative Commons Rights Expression Language (ccREL) lets you describe copyright licenses in RDF. For more information on describing licenses in RDF and attaching those descriptions to digital works, see [ccREL](https://wiki.creativecommons.org/CC_REL) in the [Creative Commons wiki](https://wiki.creativecommons.org/)."^^ . "http://purl.obolibrary.org/obo/HAO_$1"^^ . "nfdi4chem.osmo" . . "Physics Subject Headings" . . . . "YOR172W_571.0"^^ . . . . "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue."^^ . "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding."^^ . . . . . "ontology" . . . "false"^^ . . "wormpep" . . . . . . . . "functional genomics" . "Relation Ontology" . "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms."^^ . "true"^^ . . . "molecular interaction" . "apo" . . . "International Classification of Diseases, 9th Revision" . . "/53355/cl010066723"^^ . . . "https://openalex.org/"^^ . "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1"^^ . . . "^[a-z0-9-_.]+$"^^ . . . . "false"^^ . . . . . . "true"^^ . "https://www.ebi.ac.uk/interpro/entry/pfam/"^^ . "A vocabulary for calendar events and related objects"^^ . . . . "P23298"^^ . . . . . "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$"^^ . . . . "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1"^^ . . "0000066"^^ . . "data schema" . "linkedin" . . . . . . . "P4355"^^ . . "research" . "false"^^ . "ToxoDB" . . "http://sideeffects.embl.de/se/"^^ . . "Maaya Manoj" . "https://easychair.org/cfp/$1"^^ . . . . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME"^^ . . "Specifies the event happening over the data life cycle that is considered significant enough to document."^^ . "mmp.ref" . "false"^^ . "sweet.phgs" . "tib.re" . . "false"^^ . . "title"^^ . . . . "0000156"^^ . "pennsieve" . "edam.operation" . "Animal Genome QTL" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Assessment"^^ . "earth sciences" . "discipline" . "https://www.pharmvar.org/gene/"^^ . . . . . "false"^^ . "https://www.biocatalogue.org/services/$1"^^ . . . . "true"^^ . "tib" . "https://www.mlcommons.org/mlc-id/$1"^^ . . . . "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families."^^ . . . . "ccso" . "^\\d{7}$"^^ . . "bsweeney@ebi.ac.uk" . . . . "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web"^^ . . . "false"^^ . . "https://mycobrowser.epfl.ch/genes/"^^ . "obo" . . . . "frbr" . "obo" . "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."^^ . . . "^\\d{7}$"^^ . . . . . "obo" . . . "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds."^^ . . "splash10-0zq2000000-77302b0326a418630a84"^^ . "aopo" . . . . . . . . "https://flybase.org/reports/FBrf$1"^^ . . . "fid baudigital" . . "http://purl.obolibrary.org/obo/MCO_"^^ . . . . . . "https://saref.etsi.org/saref4bldg/"^^ . . . . . . . . "false"^^ . "mutation" . "d.e.starns@liv.ac.uk" . . "co_333" . "Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system."^^ . . "metadata standardization" . "58788"^^ . "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement."^^ . . . . "sorepts" . "Gary Bader" . "The base ontology of the ABCD Standard."^^ . . . "false"^^ . "WikiGenes" . "TRL"^^ . "Ontology about the development and life stages of the C. elegans"^^ . "fid baudigital" . "National Microbial Pathogen Data Resource" . "33"^^ . . "Unified Medical Language System Atomic Unique Identifier" . "false"^^ . . "spar" . . . . . _:N780e155af7bd43458e18aa54e7fbabed . "Satoshi Fukuchi" . . . . . "false"^^ . . "NLXORG" . . . "false"^^ . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs."^^ . . "genomics" . "^PDC\\d+$"^^ . . . . . . . . "ontology" . "10b38aaf-b977-4950-85b8-f4775f66658d"^^ . . . . . . . . . . "phrr" . . . . "0001109"^^ . "239287"^^ . "The Genome Taxonomy Database (GTDB) is an initiative to establish a standardized microbial taxonomy based on genome phylogeny."^^ . . . . . "The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit."^^ . . . . . "fibroblast" . . . "gro-cpga" . "false"^^ . . . . . . . "ontology" . . "marine ecology" . . . . "dataplant" . . . "An ontology to standardize research output of nutritional epidemiologic studies."^^ . "http://sweetontology.net/humanEnvirControl/$1"^^ . . . . . "10090-chr10qC"^^ . "false"^^ . . . . . "http://dbpedia.org/property/"^^ . "https://www.pirbright.ac.uk/node/$1"^^ . . "https://portal.hubmapconsortium.org/browse/sample/$1"^^ . "nfdi4ing" . . "trnadbce" . . "ontology" . . "paper" . . "cncb.gwh" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Jurisdiction"^^ . . . . . . . . "Publons publication" . . . "^\\d{7}$"^^ . . . "genomics" . "Golm Metabolome Database Analyte" . . . . . . . "CPX-263"^^ . . . . . "ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides and maintains identifiers for alleles."^^ . . . . . . . "5277619"^^ . "SWEET Ontology Human" . . . "Gene Ontology Database references" . . "state biological" . "mirbase" . . "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1"^^ . "http://www.interfil.org/details.php?id="^^ . "catalog" . "http://zbw.eu/stw/thsys/$1"^^ . "true"^^ . . . . "0000044"^^ . . . . "zhu@iastate.edu" . . . "^GenProp\\d+$"^^ . . . "https://www.ncbi.nlm.nih.gov/gtr/labs/$1"^^ . . "mirbase.mature" . "ResearcherID" . . . "dna" . . "cdao" . "http://homosaurus.org/terms/$1"^^ . "false"^^ . . "clustering" . "fish" . "^\\d{7}$"^^ . . "chemistry" . "Genome Properties" . . "food" . . "chemical" . "MathModDB Ontology" . . "http://sweetontology.net/state/$1"^^ . . "http://purl.obolibrary.org/obo/MP_"^^ . . . "somaae" . . "uniprot.db" . . "c.orengo@ucl.ac.uk" . . . . "Assigns persistent identifiers to multidisciplinary research outputs with focus on research originating in Africa, such as in cultural heritage and indigenous knowledge."^^ . . "obo" . . . . "http://sweetontology.net/phenEnergy/"^^ . "hgnc.genefamily" . . . . . . "https://www.kegg.jp/entry/$1"^^ . . "omics" . "hepro" . "http://sweetontology.net/realmLandAeolian/"^^ . . . . "false"^^ . "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017."^^ . . . . . "disease" . . . "SILVA Taxon" . . "hpa" . "http://www.phosphosite.org/proteinAction.do?id=$1"^^ . "This ontology aims to model the Web of Things domain according to the W3C Interest Group (http://w3c.github.io/wot/)"^^ . . "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae."^^ . "BG11523"^^ . . "false"^^ . "Each OCI (Open Citation Identifier) has a simple structure: oci:-, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entity - see https://doi.org/10.6084/m9.figshare.7127816.v2 for additional information. In each OCI, the first is the identifier for the citing bibliographic resource, while the second is the identifier for the cited bibliographic resource."^^ . . "^\\d+$"^^ . "http://purl.obolibrary.org/obo/FIDEO_$1"^^ . . . "https://progenetix.org/services/ids/$1"^^ . "CH_001923"^^ . "EAWAG Biocatalysis/Biodegradation Database reaction" . . . . "http://purl.obolibrary.org/obo/FAO_"^^ . . "category"^^ . . "ffdd3a7e-f82e-4600-98b1-20402e74b0a6"^^ . . . "lattes" . "dialnet.book" . . "Property"^^ . "ML0224"^^ . . "https://crates.io/crates/$1"^^ . . "false"^^ . "ogg" . "microbial ecology" . "Progenetix" . . . "http://sweetontology.net/relaChemical/$1"^^ . "http://uri.neuinfo.org/nif/nifstd/nlx_organ_"^^ . "The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients."^^ . "https://www.atcc.org/products/$1"^^ . "10"^^ . "Alzheimer's Disease Ontology" . . . . . "data acquisition" . . "sweet.phatmops" . . "^\\d+$"^^ . . . . . "SWEET Ontology Phenomena Star" . . . . . . "proteomics" . "Ivan Herman" . "life science" . "false"^^ . . "SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web"^^ . "kim.hochschulfaechersystematik" . . "jesper.friis@sintef.no" . "biology" . . "https://www.hipsci.org/#/lines/"^^ . "sioc.swan" . . "digital curation" . "obo" . . . "^\\d{7}$"^^ . . "false"^^ . "http://www.p3db.org/protein.php?id=$1&ref=0"^^ . . "SWEET Ontology Representation Mathematics Solution" . . . . . . . "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name="^^ . . "AdditionalExpectedResponse"^^ . . "1250"^^ . . . . . . "Lorenz Reimer" . . . "engineering" . . "https://www.holofooddata.org/animal/"^^ . . . "false"^^ . "false"^^ . "https://biopragmatics.github.io/providers/diseaseclass/$1"^^ . . . . "morbidity" . . "DrugBank Drug Category" . . . "false"^^ . . . . . "cog.pathway" . "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue="^^ . "Haiyun Wang" . "Protein covalent bond" . "false"^^ . . . . "An instance of the EBI Lookup Service deployed by TIB"^^ . "structure" . . . . . "322"^^ . . . . "false"^^ . "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis="^^ . . . "ontology" . . . "^\\d{7}$"^^ . . . "false"^^ . . "GrainGenes symbol" . "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1"^^ . "131"^^ . . . . . "^\\d+$"^^ . . . . "jrc-eurl-ecvam-chemagora"^^ . . "nfdi4energy" . "false"^^ . . . "Ruth Duerr" . "^K[0-9]+$"^^ . . "Fly taxonomy" . "http://purl.obolibrary.org/obo/TXPO_$1"^^ . . . "http://purl.obolibrary.org/obo/PSO_"^^ . . . . "ontology" . . . . . . . . . . . "afo" . "Proteomic Data Commons" . . . . . "genome" . . "SWEET Ontology Representation Mathematics Function" . "sweet.mains" . "ontology" . . "https://pmb-bordeaux.fr/maggot/metadata/$1"^^ . . "MultiCellDS collection" . . . "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures."^^ . . . "http://www.ebi.ac.uk/efo/EFO_"^^ . . "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID="^^ . . "https://fanta.bio/cre/"^^ . . . "https://cropontology.org/rdf/CO_356:$1"^^ . . "Ctenophore Ontology" . "biominder" . "sweet.relch" . . . "http://w3id.org/openeduhub/vocabs/educationalContext/"^^ . . . "phenomena" . . "supfam" . . "https://www.gbif.org/species/"^^ . . "gesis.rexdatatype" . . . "rna" . "developmental biology" . "^DDInter\\d+$"^^ . "^PM\\d{7}$"^^ . "^[1-9]\\d{5}$"^^ . "http://purl.obolibrary.org/obo/TRANS_$1"^^ . . . . "genomics" . . . . . "life science" . . "Orientation of Proteins in Realistic Lipid Membranes" . . . . "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"^^ . "Ontology of Host-Microbiome Interactions" . . . . "http://dase.cs.ksu.edu/ontology/food-traceability#$1"^^ . . . . "NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system."^^ . . "TIGR00010"^^ . "Groups listed in GEMET"^^ . . "false"^^ . "14362"^^ . . . . _:N410c642aad994bbab67fc34f91c6cddc . . "75"^^ . "mim" . . . . "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\"."^^ . . "biology" . . "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems."^^ . . "co_348" . "evolution" . . "false"^^ . _:Nd37ef582ce0145f19c8af0c1cb83f3a7 "Patrick Le Bœuf" . . "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1"^^ . . . . "coypu" . "SWEET Ontology Material Instrument" . "genotyping" . "wikigenes" . "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref="^^ . . . . . . . . "https://biodolphin.chemistry.gatech.edu/detail/$1"^^ . . . . . "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."^^ . . "The Behaviour Change Intervention Ontology" . . . . . "http://purl.obolibrary.org/obo/INO_$1"^^ . "small molecule" . "Database of Macromolecular Movements" . "verbal autopsy" . "http://data.europa.eu/bkc/notation_$1"^^ . . . . "medicinal chemistry" . "genome" . "nlx.res" . . . . . . "Cellosaurus Publication" . . "^\\d+$"^^ . . . "http://purl.obolibrary.org/obo/SYMP_"^^ . "somamin" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Body"^^ . "Includes a typology of data collection instruments."^^ . . . . "^LTS\\d{7}$"^^ . . "false"^^ . . "knockout" . "false"^^ . . "ChemIDplus" . . . . . "false"^^ . . . "https://www.kegg.jp/pathway/$1"^^ . . "false"^^ . . "SWEET Ontology Relationships Space" . "materials" . "Prefix Commons" . _:Ndda8e0c79b85494ea807f86806b8715c "gregg@greggkellogg.net" . "panther.pathway" . "commoncoreontology" . "ontology" . "Small Angle Scattering Biological Data Bank" . "false"^^ . "https://vocabularies.cessda.eu/vocabulary/TypeOfTelephone?lang=en#code_$1"^^ . . "false"^^ . "glycomics" . . "Jennifer C. Girón" . . . . . "^\\d+$"^^ . . . "sost" . . . . . . "genome" . "0000079"^^ . "taxonomy" . . . . . . . "7207"^^ . . "ontology" . . "BRENDA Ligand Group" . . "Creative Biolabs protein" . . . "environmental material" . . "obo" . . "false"^^ . . "0000001"^^ . . . . . . . . . "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments."^^ . "pathology" . . "true"^^ . "C34"^^ . . . . . . . . "ontology" . "An issue on the MONDO GitHub issue tracker"^^ . . . . "nfdi4chem" . . "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . . "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database."^^ . . . "nasaosdr.experiment" . "nlx.br" . . "http://sweetontology.net/human/$1"^^ . "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"^^ . "wave" . . . . . "categorical" . . . . "georgeta.bordea@u-bordeaux.fr" . "tib" . . . "0000001"^^ . "gpcrdb" . . "biological_process" . . "taxonomic classification" . . . . . . . . . "data analysis" . . . . "col.taiwan" . . . . . "sweet.phatmofr" . "Causation"^^ . . . . "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$"^^ . . "http://www.theworldavatar.com/ontology/ontospecies/OntoSpecies.owl#"^^ . . . . "electronic health record" . "http://purl.obolibrary.org/obo/APO_$1"^^ . . . "ENSG00000139618"^^ . . . "co_347" . "https://www.ebi.ac.uk/biomodels/"^^ . "study design independent variable" . . . . . . . "iot" . "false"^^ . . . . . . "orthologous" . "biopragmatics/bioregistry/424"^^ . "false"^^ . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena."^^ . . . . "1"^^ . . . "dna" . "sweet.reptd" . "life science" . . "botany" . "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA."^^ . . . . "3447"^^ . . . . "false"^^ . "ecn" . . . . "^(\\d+)|([a-zA-Z_]+)$"^^ . "The Context and Measurement Ontology (COMO) contains ontological terms to describe the context for various types of experimental data and measurements. It is useful in its current state for several different environmental microbiology projects. This ontology is used in multiple CORAL (Contextual Ontology-based Repository Analysis Library) deployments."^^ . . . . . . . . "^UPI[A-F0-9]{10}$"^^ . "Analysis"^^ . "fid move" . . . . "PELNAW"^^ . . "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics"^^ . "https://netmode.gitlab.io/sustaingraph/"^^ . . "http://purl.obolibrary.org/obo/CLYH_"^^ . . . "http://purl.obolibrary.org/obo/CVDO_"^^ . "subject agnostic" . "false"^^ . "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1"^^ . . "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1"^^ . . . . . . "https://pubchem.ncbi.nlm.nih.gov/substance/$1"^^ . . "KIAA0001"^^ . "false"^^ . "http://sweetontology.net/propMass/$1"^^ . . . . . . . . . "http://iflastandards.info/ns/fr/frbr/frbrer/$1"^^ . "false"^^ . "The TDWG Vocabulary Maintenance Standard consists of a single document: the Vocabulary Maintenance Specification."^^ . . . "AcaStat"^^ . "https://bioregistry.io/resolve/github/issue/"^^ . . . . . "Progenetix" . . . "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."^^ . . . . . "aging" . "biology" . "ICD10" . . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene."^^ . "http://biohackathon.org/resource/hco#"^^ . . . . . . . "molecular dynamics" . . "taxonomy" . . . "geography" . . . "http://rdfs.org/sioc/access#$1"^^ . . "https://bacteria.ensembl.org/id/$1"^^ . "true"^^ . "compounds appearing in nmrXiv that have associated spectra."^^ . . "https://lov.linkeddata.es/dataset/lov/vocabs/$1" . . . . . "BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format."^^ . "Contains identifiers for genes that are part of cohesin regulated CRMs (cis-regulatory modules) from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related CRM. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information."^^ . "false"^^ . "Identifiers for missions associated with experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . . "A controlled vocabulary to support the study of transcription in the mouse brain"^^ . . "Irina Medvedeva" . "National Drug Code" . . . "http://www.radiomics.org/RO/"^^ . . . . . . "ofiehn@ucdavis.edu" . . . . . "true"^^ . "agriculture" . "https://scicrunch.org/resolver/RRID:$1"^^ . "GLIDA Ligand" . . . "PRO" . "Alpha Tom Kodamullil" . "biomaterial" . . . "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id="^^ . . "S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix."^^ . "https://saref.etsi.org/saref4envi/$1"^^ . "HPA000698"^^ . . . . "Pankaj Jaiswal" . "false"^^ . . "http://sweetontology.net/propSpace/$1"^^ . . . . "mental health" . . . . . "johnbeverley2021@u.northwestern.edu" . "conference" . "bioinformatics" . . . . . "anne.morgat@sib.swiss" . "pseudogene" . "gene duplication" . . "foodb" . . "5ede4273-b26c-4ea4-adb7-3ce294ab3397"^^ . "bbkg" . "https://cohesindb.iqb.u-tokyo.ac.jp/browsegene/eachgene/$1"^^ . "identifier of an author or reviewer, in Semion"^^ . . "nfdi4ing" . . . "http://sweetontology.net/realmLandGlacial/"^^ . "anatomy" . . . "GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals"^^ . . . "false"^^ . . . . . . . . "pharmacodb.tissue" . . . . "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries"^^ . "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$"^^ . "ShiBASE" . "obo" . . "false"^^ . "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1"^^ . "http://sweetontology.net/matrMicrobiota/"^^ . "Expression"^^ . . . "http://degradome.uniovi.es/cgi-bin/protease/$1"^^ . . . . "A comprehensive compendium of human long non-coding RNAs"^^ . "^\\d+$"^^ . "ontology" . "ECCODE" . . "hagr.genage" . . . . . "life science" . . . "somatic" . . . "^\\d+$"^^ . "MIRIAM Registry collection" . . . . "animal model" . "knowledge and information systems" . "AAA35559"^^ . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDIxCS" . "false"^^ . . "false"^^ . . "pathway" . "dhowe@zfin.org" . "http://www.cellsignal.com/products/$1.html"^^ . . "sylvain.v.costes@nasa.gov" . . . . . . . . "^\\d+$"^^ . "true"^^ . . . . . . . . . . . . . . "sorepsrs" . . . . . . . "3355"^^ . "WBls" . . "^\\d+$"^^ . . . . "^[a-zA-Z0-9\\-:#/\\.]+$"^^ . . "WB" . . . "https://www.ebi.ac.uk/biosamples/sample/"^^ . "https://w3id.org/ccso/ccso#$1"^^ . "geometry" . "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1"^^ . "reagent" . . . . . "070886"^^ . "cryosphere" . . "taxonomy" . . "^\\d+$"^^ . "1000001"^^ . . . . "empty" . "structure" . . "http://purl.obolibrary.org/obo/SWO_"^^ . "Blake A Sweeney" . . "A vocabulary describing licenses for data and code"^^ . . "interaction" . . . . . "http://www.labesc.unirio.br/InfoSecSoS#$1"^^ . . . "Bacterial Tyrosine Kinase Database" . . "NCI" . "organ" . . "dalia.oer" . . . "03307879"^^ . . "James Alastair McLaughlin" . . . . . . . . "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1"^^ . . . "environmental science" . . . . . . "Semantically-Interlinked Online Communities Core Ontology" . . . "spradling@ciwemb.edu" . . . . . . "obo" . "The scope of the TUBES ontology is to explicitly define the topology of interconnected building service system and their relationship to the spatial structure. It has a strong alignment to other ontologies within the W3C community and aims to provide the means to link information at data level within the AEC industry."^^ . "^T[A-Z]\\d{7}$"^^ . "chebi"^^ . "Every entity in OpenCitations Meta (https://opencitations.net/meta) is assigned persistent internal identifier called OpenCitations Meta Identifier (OMID). The OMID has structure [[entity_type_abbreviation]]/[[supplier_prefix]][[sequential_number]]. For example, the first journal article ever processed has OMID br/0601 (the full URI is https://w3id.org/oc/meta/br/0601), where br is the abbreviation of bibliographic resource, and 060 corresponds to the supplier prefix, helpful in recognising at a glance the index it belongs to (i.e., OpenCitations Meta). Finally, 1 indicates that this is the index's first bibliographic resource ever minted."^^ . . . "multicellds.snapshot" . "pibase" . "^BGC\\d{7}$"^^ . . "obo" . . . "false"^^ . . "genome" . "https://www.ensembl.org/id/$1"^^ . . "chemistry" . "SWEET Ontology Realm Ocean Feature" . "false"^^ . . . . . "dataplant" . . . . "00000000"^^ . . "false"^^ . . . . . "false"^^ . . . . "sopropst" . . . "https://www.ncbi.nlm.nih.gov/snp/$1"^^ . . . . "SWEET Ontology Phenomena Fluid Dynamics" . . "The NFDI4Culture portal offers all content as Linked Open Data over this RESTful API. The API implements the Hydra-Specification of the W3C Hydra Community Group. The semantic description of this API can be retrieved by clients via the Hydra documentation file (JSON). Each metadata record offered via this API can also be retrieved in one of following machine-readable LOD serializations. The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage)."^^ . "Claudia Tredup" . "blastrule" . . "false"^^ . . _:N900a645280aa4ebcb3330169f959b61f "whocc@fhi.no" . "sweet.mab" . . . "NBK331"^^ . "https://vocab.org/vann/#$1"^^ . . "Merriam Webster Dictionary" . "1"^^ . "http://www.fairsharing.org/ontology/domain/DRAO_"^^ . "false"^^ . "glycomedb" . "false"^^ . . . . . "https://terminology.fraunhofer.de/voc/raum#$1"^^ . . "DisProt" . "molecular physical chemistry" . "Identifiers represent experimental growth profiles documenting fungal species' ability to utilize specific carbon sources (plant biomass components, polysaccharides, and monosaccharides) in the FUNG-GROWTH database, which provides phenotypic data to support functional genome annotation and comparative analysis of carbohydrate metabolism across fungal species."^^ . "raid" . . "imsr_em" . . "false"^^ . . "false"^^ . . . . "vegbank" . "http://www.iclc.it/details/det_list.php?line_id="^^ . . "rdfs" . . . . . . . "seed.reaction" . . "small molecule" . "biodiversity" . . . . . "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/"^^ . . . . "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources."^^ . "educational resource" . . . "The Heat Pump Ontology (HPOnt) aims to formalize and represent all the relevant information of Heat Pumps. The HPOnt has been developed as part of the REACT project which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 824395."^^ . "ARBA00000001"^^ . "life science" . "false"^^ . . . . . "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page)."^^ . "obo" . "Richard John Roberts" . . . "true"^^ . "SABIO-RK Reaction" . "exif" . "false"^^ . . . . . "false"^^ . . . . . . . . . . . . "^TCTR\\d+$"^^ . . "http://purl.obolibrary.org/obo/OGSF_"^^ . . "metacyc.pathway" . . . "http://sweetontology.net/reprDataProduct/"^^ . . "Pesticide Properties DataBase" . . . . . "NMRShiftDB" . "The hu.MAP integrates several large scale protein interaction datasets to obtain a comprehensive view of protein complexes."^^ . . . "http://protege.stanford.edu/plugins/owl/protege#$1"^^ . . . . . "IUPHAR family" . "preclinical studies" . "https://dialnet.unirioja.es/servlet/revista?codigo=$1"^^ . . "chemical" . . "Identifiers represent antibody-antigen complexes in the Antigen-Antibody Complex Database (AACDB), which provides comprehensive structural and functional annotations including paratope and epitope information, antibody developability data, and antigen-drug target relationships to support immunoinformatics research and therapeutic antibody development."^^ . "OMIT" . . . "tib.ts" . . . . . "nucleardb" . "protein" . . "P683" . "chemistry" . . . . . "^LDCM\\d+$"^^ . "0000000"^^ . . . . . "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI)"^^ . . "false"^^ . "http://sweetontology.net/realmGeolOceanic/$1"^^ . "M58335"^^ . . . "anatomy" . . . . "PolyMat is a domain ontology designed for polymer membrane research and tailored for immediate integration within Electronic Laboratory Notebooks (ELNs), facilitating efficient documentation of laboratory experiments and advancing the domain's FAIRification process."^^ . . . . . "^\\d{7}$"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System Complexity"^^ . . . . . . . . . . . "Christine.Pourcel@u-psud.fr" . "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools."^^ . "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . "SNOMEDCT_US_2020_09_01" . . "obo" . . "single cell rna-seq" . "11303"^^ . "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"^^ . . . "umbbd.rule" . . "data schema" . "false"^^ . . . "assay" . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene."^^ . . . . "Haruki Nakamura" . . "educational resources" . . . _:Nfeb2b0e7174d4203b88459c358035a08 "slarson@ncmir.ucsd.edu" . "https://www.ebi.ac.uk/interpro/entry/InterPro/$1"^^ . "http://purl.obolibrary.org/obo/NOMEN_$1"^^ . . "Anatomical Therapeutic Chemical Classification System" . . "String"^^ . . . . . . . . "https://labsyspharm.github.io/lspci/"^^ . "PTM" . . . . . . . . . . . "true"^^ . . . . . . . "false"^^ . . . "http://www.unimod.org/modifications_view.php?editid1="^^ . . . . . "Terms from the source appear in the target resource" . "Gerhard Mayer" . . "AirSeaExchange"^^ . "Philippine Health Research Registry" . "biomedical science" . . . "https://w3id.org/kim/license/$1"^^ . "https://labsyspharm.github.io/lspci/$1"^^ . "^RF\\d{5}$"^^ . . . . . "glycomics" . "oci" . "A frontend to Wikidata"^^ . "false"^^ . . "bioinformatics" . . . "http://purl.obolibrary.org/obo/ORNASEQ_"^^ . . "VB.Ob.3736.GRSM125"^^ . . . "https://www.scopus.com/authid/detail.uri?authorId="^^ . . . . "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code="^^ . . "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data."^^ . . "sophatmopc" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Reference System"^^ . . . "cl3603"^^ . . . . . "false"^^ . "https://www.icd10data.com/search?s="^^ . _:N6345fc15ae8a4c6d938e932ab150f2eb "futo@stanford.edu" . "https://cropontology.org/rdf/CO_320:$1"^^ . "Bacillus subtilis genome sequencing project" . . . "phenomics" . "Hathi Trust Digital Library" . "https://w3id.org/dot#"^^ . "cell line" . . _:N7ff62098abbb4b279335f683d1a432a3 "GenBank Support" . . . "https://www.ebi.ac.uk/chembl/compound/inspect/$1"^^ . . "chembl.tissue" . "https://www.ebi.ac.uk/ena/data/view/$1"^^ . . . . . . . . . "false"^^ . . "nfdi4ing" . . "https://eds.gene.le.ac.uk/home.php?select_db="^^ . . "medgen.cid" . . . "0000079"^^ . "atomistic" . . "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam="^^ . . "0000111"^^ . "http://sweetontology.net/propDimensionlessRatio/$1"^^ . . . "hubmap.sample" . . "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass="^^ . "false"^^ . "Enzo Life Sciences" . . "^\\d+$"^^ . "false"^^ . "nfdi4ing" . . . . "false"^^ . . "computer science" . "BLCS_Framework"^^ . . "Cell line collections (Providers)"^^ . "^DG\\d+$"^^ . . . . . "The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary."^^ . "protein" . . . . "adw" . . "AT4G01080"^^ . . "mathematics" . . "The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains."^^ . . . "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . . "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . . "false"^^ . "ehda" . "nfdi4ing" . "knowledge and information systems" . . "medgen" . . . "http://sweetontology.net/realmHydro/$1"^^ . . "Gi07796"^^ . "23"^^ . . . . . . "drug interaction" . "Radiation Biology Ontology" . "CFo000000197"^^ . . . . . "Dawood B. Dudekula" . . . . . "881104060"^^ . . "false"^^ . . . . . "mmp.fun" . . . "ogc.sf" . . . . . . "philosophy" . . . . . "oncology" . . . "90801"^^ . "http://sweetontology.net/phenHydro/$1"^^ . . "false"^^ . "^\\d{7}$"^^ . . "http://www.ontodm.com/OntoDM-core/OntoDM_$1"^^ . . . "Simple Knowledge Organization System eXtension for Labels" . . "dentistry" . "^[A-Z]+[0-9]+(\\.\\d+)?$"^^ . . "EMD-1001"^^ . . . . . . "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs."^^ . . . . . "OBO Metadata Ontology" . . . "false"^^ . . "chemical" . . . . _:Ndd63309fd41c4994a61a04b3cc8cf0bf "Hossein Beygi Nasrabadi" . . . "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome."^^ . . "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . . . . "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1"^^ . "sweet.reaa" . "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information."^^ . . "jak@ucop.edu" . "phenotype" . "2h6o"^^ . . . . . "^Y[A-Z]{2}\\d+[CW]$"^^ . . . "CPD-10330"^^ . "The Drug Ontology" . "FlyBase is the database of the Drosophila Genome Projects and of associated literature."^^ . "http://lincsportal.ccs.miami.edu/cells/#/view/"^^ . "Identical"^^ . . "false"^^ . "vendor" . "false"^^ . . "https://data.chembiosys.de/strains/$1"^^ . "nmr" . . . "International Standard for Intelligent Information Request and Delivery Machinery Ontology" . "sopropcou" . . . _:N65aa54a1b34f467d862f849c8f2fec01 "Lars Juhl Jensen" . "KESTREL Ontology" . . . . . . . . "false"^^ . "CHEBI" . "http://purl.org/spar/deo/$1"^^ . . . . . . . "asu@scripps.edu" . . . . . "environment" . . . . . "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1="^^ . . "classification" . "http://purl.obolibrary.org/obo/FOVT_"^^ . "Viral Bioinformatics Resource Center" . . "false"^^ . . . . . . . . . . "false"^^ . . . "Multiplexed Assays of Variant Effect Database" . . . . "pathogen" . "http://sweetontology.net/stateTimeFrequency/"^^ . "oncotree" . "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB."^^ . . . "http://purl.obolibrary.org/obo/DIDEO_$1"^^ . "CHEBI"^^ . . . "022586"^^ . . . . "Vehicle Signal Specification Core Ontology" . . "ColdestMonth"^^ . . . "infectious disease medicine" . . . . "imp10873"^^ . "NCIT" . "Immune Epitope Database Assays" . "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId="^^ . "^\\d{7,}$"^^ . . "Thorsten Henrich" . . "medicine" . . . . "DirectiveInformationContentEntity"^^ . "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases."^^ . . "Ontology of RNA Sequencing" . . . "AntiFam is a database of spurious protein families that have been removed from Pfam due to incorrect hidden Markov model prediction."^^ . "false"^^ . . "microRNA Gene Database" . "infection process" . . . "protein" . . . "^[AMCST][0-9x][0-9]$"^^ . . . "biomodels.db" . "^NBK\\d+$"^^ . "false"^^ . . . "http://www.narcis.nl/publication/RecordID/"^^ . . . "http://sweetontology.net/phenOceanDynamics/$1"^^ . . . "false"^^ . "https://scicrunch.org/resolver/RRID:NXR_"^^ . . . . . . . . "https://cohesindb.iqb.u-tokyo.ac.jp/browseloop/eachloop/$1"^^ . "abcam" . . "state change" . . . "GeoNames Ontology" . "https://www.thermofisher.com/antibody/product/$1"^^ . . "http://func.mshri.on.ca/fly/genes/list_functional_scores/"^^ . "^\\w{3}\\d{5}(\\.\\d+)?$"^^ . "false"^^ . . "false"^^ . . . . "false"^^ . . . "sorepsp" . . . . . "http://purl.obolibrary.org/obo/MFOEM_$1"^^ . "life science" . . . . . "bioinformatics" . "https://biopragmatics.github.io/providers/sfam/"^^ . . "NIH RePORTER" . . . "0007807"^^ . "EcoliWiki from EcoliHub" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Transportation"^^ . . . . "Terminology for Description of Dynamics" . . . . . . . . . "sourceDateStart"^^ . . . "https://cropontology.org/rdf/CO_327:$1"^^ . . "false"^^ . . . . . . "NFDI4Chem Collection" . "Luis González-Montaña" . . . . "CHMO, the chemical methods ontology, describes methods used to"^^ . "https://bioregistry.io/tokue:"^^ . "ConfIDent Event Series" . . "EJH014"^^ . . "representation" . . . . . "true"^^ . "PF3D7_1328700"^^ . . "infectious disease medicine" . "database" . "^\\d{7}$"^^ . . "obo" . . . "false"^^ . "https://matrixdb.univ-lyon1.fr/association/$1"^^ . . . _:N4b360f8603a34a90b05c02a2ff285f4c "adw_geeks@umich.edu" . "00100037"^^ . . "false"^^ . "https://www.checklistbank.org/dataset/$1"^^ . "http://geneontology.org/docs/gene-product-information-gpi-format/#"^^ . . "The Audio Commons Ontology has been created in the context of the European project [Audio Commons](https://www.audiocommons.org/), which were aimed at favouring sharing and reuse of audio content (both of musical and non-musical nature), specially using [Creative Commons](https://creativecommons.org/) licenses.\n\nIt is designed specifically to integrate access to multiple heterogeneously structured audio content providers. In particular the following ones have been considered in the project:\n- [Freesound](https://freesound.org/), a collaborative database of Creative Commons Licensed sounds;\n- [Jamendo](https://www.jamendo.com/), a music website for independent artists;\n- [Europeana Sounds](https://www.eusounds.eu/), a European project collecting and sharing data from several archives of sounds and sound-related media;\n- [Internet Archive](https://archive.org/), a non-profit library of millions of freely accessible media contents.\n\n### The base model\n
![A diagram showing the entities Work, Expression, Manifestation, Item](./img/FRBR-Group-1-entities-and-basic-relations.svg.png)
\nThe Audio Commons ontology is based on [Functional Requirements for Bibliographic Records (FRBR)](https://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records), a bibliographic model designed for user tasks of retrieval and access in online library catalogues and bibliographic databases. FRBR distinguish the products of intellectual or artistic endeavor in four main classes: work, expression, manifestation, item. It is available as RDF vocabulary at https://vocab.org/frbr/core. For further information on FRBR, check the [standard](https://repository.ifla.org/handle/123456789/811).\n\nAnother important model related to audio is the [Music Ontology](http://musicontology.com/), which is also based on the FRBR model. Our ontology is more generic than the Music Ontology but is interoperable with it to support the specificities of music-related audio content.\n\nThe Audio Commons ontology works also in conjunction with\n- [Dublin Core](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/) for basic metadata,\n- [EBU Core](https://www.ebu.ch/metadata/ontologies/ebucore/) for technical properties of audio files,\n- [SKOS](https://www.w3.org/TR/skos-primer/) to support taxonomic classifications,\n- [Creative Commons Licensing schema](https://creativecommons.org/ns) to represent media licensing,\n- [Event ontology](http://motools.sf.net/event/event.html) for the formalisation of events,\n- [Audio Features Ontology](https://w3id.org/afo/onto/) for the characterisation of audio features.\n\n### Ontology overview\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Skeleton.png)\n\nThe figure above shows the most general classes and properties of the Audio Commons ontology and their relationship with classes of the FRBR and the Music Ontology:\n- **`ac:AudioExpression`**, the specific intellectual or artistic form that a work takes each time it is _realised_, in the audio domain, e.g., the recording or synthesis of music or sounds;\n- **`ac:AudioManifestation`**, the physical embodiment of an audio expression, e.g., a musical track, a sound, an album; \n- **`ac:AudioItem`**, a single exemplar of an audio manifestation, e.g., a copy of a CD or a specific media file.\n\nThe FRBR class Work, representing a distinct intellectual or artistic creation on a more conceptual level, has not been specialised in Audio Commons.\n\nThe Audio Commons ontology provides a generic schema for audio classification through the property **`ac:audioCategory`** that associates any audio expression, manifestation, or item to some generic **`ac:AudioCategory`**. These two terms can be specialised to provide spefic categorisations.\n\n### Manifestations: audio clips and collections\n\n![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Manifestation.png)\n\nThe figure above shows classes and properties related to audio manifestations. An instance of **`ac:AudioClip`**, a subclass of `ac:AudioManifestation`, is any audio segment that has been published in some form or uploaded for consumption, for example, a track in a music label's repository or a sound in an audio repository, library or archive.\n\nThe class **`ac:AudioCollection`**, another subclass of `ac:AudioManifestation`, is used to represent collections of audio clips. The class **`ac:AudioCollectionNode`** is used to represent single nodes of a collection, offering local information like the index in the collection and pointers to previous and next nodes. The separation between the collection node and its actual content (e.g., an `ac:AudioClip`) permits the same content to be shared in multiple collections.\n\nThe content of each node of a collection is not limited to an `ac:AudioClip`, but may contain any `ac:AudioManifestation`. Collections can thus contain other collections to support specific cases, e.g. a mapping to the Music Ontology model where an `mo:Release` can contain multiple `mo:Record`(s) that can in turn contain multiple `mo:Track`(s).\n### Items: audio files\n![A diagram showing ac:Item class and related class and properties](./img/AC-Ontology-Item.png)\n\nAn `ac:AudioItem` is a concrete exemplar of an audio manifestation. In our domain, the main exemplars are the actual audio files. \n\nThe corresponding class **`ac:AudioFile`** is a subclass of `ac:AudioItem`. It is subclass of `ebu:MediaResource` too and the corresponging properties of EBU Core can be used to describe the file (e.g., `ebu:hasEncodingFormat`, `ebu:fileSize`).\n\n### Expressions: audio signals\n![A diagram showing ac:Expression class and related class and properties](./img/AC-Ontology-Expression.png)\n\nWhile `ac:AudioFile` represents a concrete file encoded in a certain format, **`ac:DigitalSignal`** is the representation of the corresponding digital signal. `ac:DigitalSignal` is a subclass of `ac:MusicalExpression`. \n\nThe data properties `ac:sampleRate`, `ac:bitsPerSample`, and `ac:channels`, associate a signal with its basic features specific to digital representations.\n\nThe property `ac:publicationOf` can be used to associate an `ac:AudioClip` with the corresponding digital signal. The property `ac:encodes` instead, associates an `ac:AudioFile` with the encoded digital signal.\n\n### Events: recording/syntesis\n![A diagram showing ac:SignalProduction class and related class and properties!](./img/AC-Ontology-SignalProduction.png)\n\nThe description of temporal events is crucial to formalise and document transitions in the workflow of audio production and publication. The class `event:Event` of the Event Ontology is thus specialised for specific actions that are interesting for the audio domain.\n\nUsing the `event:Event` class, details of an event such as its location in time and space, its factor and its products may be explicitly described. Moreover, events can be composed using the property `event:sub_event`, to build complex events.\n\nThe class `ac:SignalProduction` represents the act of producing a `ac:Signal`, which could be either an `ac:AnalogSignal` or a `ac:DigitalSignal`. This is complemented by **`ac:Recording`**, representing the process of recording a sound (`ac:Sound`) or the product of **`ac:Synthesis`**, in case of artificially generated sounds. \n\n### Events (continued): publication\n![A diagram showing ac:Publication class and related class and properties!](./img/AC-Ontology-Publication.png)\n\nThe event **`ac:AudioPublication`** represents the public release of a piece of work, e.g., the release of a new album by a band.\n\n### Usage Example\n![A diagram showing an example of ontology usage!](./img/AC_Example-AudioClip.png)\n\nThe figure above shows an example of use of the Audio Commons ontology to represent a sound from the Freesound database. For simplicity only the classes `ac:AudioClip`, `ac:AudioFile`, and `ac:AudioCategory` are used in this case."^^ . "thesaurus" . . "https://neurovault.org/images/$1"^^ . . "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)"^^ . "https://europepmc.org/article/ppr/$1"^^ . "false"^^ . "dbvar.variants" . . "059486"^^ . "HUMAN0000304"^^ . . "PesticideInfo chemical ID" . . . . . "Jessica Kissinger" . "^[CD]\\d+$"^^ . . . "http://purl.obolibrary.org/obo/ZEA_"^^ . . . "Guide to Pharmacology Ligand" . "http://sweetontology.net/propRotation/"^^ . "false"^^ . "sweet.stso" . . . . . . . . "1044544"^^ . . . "https://deims.org/activity/$1"^^ . . "3"^^ . . "variant" . "biomaterial supply resource" . "fid move" . "https://bioregistry.io/dragondb.protein:"^^ . . . . . . "false"^^ . . . . . . . . "0000728"^^ . . . . "gene" . . . . "alignedWith"^^ . "http://purl.obolibrary.org/obo/ERO_$1"^^ . . "mclarkson@uky.edu" . "synthetic biology" . "statistics" . "amalik@ebi.ac.uk" . . . "rna" . "1"^^ . . "KIM German School Types" . . "prosite" . . . . . . . "NLXQUAL" . "afpo" . . . . . . . . . . "1004005"^^ . "ror" . . "ortholog" . . "bigg.model" . . . . "Vendor for assays, cells, and antibodies"^^ . . . "Fetal Calf Serum-Free Database" . "rare disorder" . . "https://w3id.org/polymat/"^^ . . "Library of Congress Resource Types Scheme" . . . . . "geographic location" . . "^\\w+$"^^ . . . . . . "Interactions are SupraBank's way to collect information about experiments that describe the binding interaction between molecules. The form for creating an interaction enables you to list all experimental conditions. An interaction is similar to an entry in a table in your scientific publication, but providing machine readable comprehensive information. (from homepage)"^^ . . "^\\w+$"^^ . . . . . . . "comparative genomics" . "IPR" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Function"^^ . . . . . "https://saref.etsi.org/saref4lift/"^^ . "life science" . "http://sweetontology.net/stateOrdinal/$1"^^ . . "Web Annotation Ontology" . . . . "phenomena" . "Morpheus model repository" . "archdb" . . . . . "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$"^^ . . "S0960-9822(11)01319-4"^^ . . . "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1"^^ . . "https://www.ncbi.nlm.nih.gov/cdd?term=$1"^^ . "http://ecoliwiki.net/colipedia/index.php/$1:Gene"^^ . "http://sweetontology.net/phenWaveNoise/"^^ . "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1"^^ . . "Donny Winston" . . "^\\w+(\\.)?(\\d+)?$"^^ . "Dylan McGagh" . . . . "botany" . . . . . . "http://purl.obolibrary.org/obo/CRO_$1"^^ . "RNACentral" . . . "cosmic.cell" . "interaction" . "cellular neuroscience" . . . . . . . . "http://bacmap.wishartlab.com/organisms/"^^ . . . "Veterinary Nomenclature" . . . . "gnpis" . "noaa.cameo" . . . "ribonucleic acid" . . . "contracts" . . . . . . . . . . . . . "gene name" . . . "FIESTA-IoT Ontology" . . "18125"^^ . "rpillich@ucsd.edu" . . "https://w3id.org/linkml/"^^ . "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval."^^ . "Fission Yeast Phenotype Ontology" . . "Semantically-Interlinked Online Communities Services Ontology - SWAN Mapping" . "geology" . "https://www.ncbi.nlm.nih.gov/protein/"^^ . . . . . . "http://purl.org/spar/c4o/$1"^^ . . . "165a"^^ . "https://www.gleif.org/lei/"^^ . . . "Kinetic Simulation Algorithm Ontology" . "zhaoxuetong@big.ac.cn" . "human" . . "http://purl.obolibrary.org/obo/CARO_$1"^^ . "hinv.locus" . . . . "false"^^ . "https://data.terra.bio/ga4gh/drs/v1/objects/$1"^^ . . . . "Identifiers repesent antimicrobial peptides in the Data Repository of Antimicrobial Peptides (DRAMP) database which is an open-access, manually curated database of antimicrobial peptides (AMPs)."^^ . "http://data.europa.eu/ett/kos/c_"^^ . . "https://www.holofooddata.org/sample/$1"^^ . "false"^^ . "kegg.drug" . "https://smc.jgi.doe.gov/bgc/"^^ . . "insdc.gcf" . . "obo" . . . . . . . . "true"^^ . . "life science" . "http://sabiork.h-its.org/reacdetails.jsp?reactid=$1"^^ . . "nfdi4ing" . . "The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model."^^ . "nfdi4culture" . . "clao" . . . "https://www.ebi.ac.uk/intact/interaction/$1"^^ . "http://purl.obolibrary.org/obo/CMF_"^^ . . . . . "organization" . . . . . "KIM License" . . "leen.vandepitte@vliz.be" . . "morphology" . . "Sum"^^ . . . "false"^^ . . "false"^^ . . . "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1"^^ . . "0000001"^^ . "immunology" . "rdf" . . "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production."^^ . "^[0-9]+$"^^ . "The Compendium is popularly referred to as the \"Gold Book\", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC \"Colour Books\" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.\n\nTerminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry.\n\nThe API can be accessed [here](https://goldbook.iupac.org/pages/api)"^^ . "AlarmSignal"^^ . "metacyc.compound" . . . . . . . . . . . . . "gene" . "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$"^^ . "false"^^ . . "false"^^ . "botany" . . . . . "International Classification of Diseases, 11th Revision (Foundation Component)" . "Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).\n\n"^^ . . "chemistry" . "obo" . . . "SWEET Ontology State Spectral Line" . "Protein Ensemble Database" . "https://bioregistry.io/p3db.protein:"^^ . . . . "https://cropontology.org/rdf/CO_331:$1"^^ . . "fluid instability" . . . "https://web.expasy.org/abcd/ABCD_$1"^^ . . . . . . "false"^^ . "pass2" . "geography" . "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id="^^ . . . "101"^^ . . . . "http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/$1"^^ . "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules."^^ . . . . "http://www.antweb.org/specimen.do?name=$1"^^ . . . . . "life sciences, biology" . "gene" . . "dpbo" . "Thesaurus for long-term ecological research, monitoring, experiments" . . . . . "02069237"^^ . . "false"^^ . . . . "0002066"^^ . . "Brachiaria ontology" . "true"^^ . "https://cropontology.org/rdf/CO_350:"^^ . . . "DBPedia Resource" . . . "false"^^ . . "false"^^ . "A controlled vocbualry of higher education resource types"^^ . . "This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family."^^ . . . "translational medicine" . . "sayers@ncbi.nlm.nih.gov" . . . . . . "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."^^ . . . . "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae."^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Binary"^^ . . . "domainIncludes"^^ . . . . "Identifiers correspond to molecular glue compounds in the MolGlueDB which is a free and open-access online database dedicated to the collection and integration of molecular glue compound information."^^ . "^\\d+$"^^ . . . "Activity"^^ . "true"^^ . "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms."^^ . "HsapDO:0000004"^^ . "https://www.alzforum.org/mutations/$1"^^ . "Charles Ettensohn" . . "classification" . . . . "biochemistry" . . . . . . . . . "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession="^^ . . . "ontology" . "https://mite.bioinformatics.nl/repository/"^^ . . . "biodiversity" . "Name-to-Thing" . . . . . . . "MMP743597.11"^^ . . "TCTR20230429001"^^ . . . . "rgd.strain" . . "conditionsofaccess"^^ . . . . . . . . . . . "https://w3id.org/BCI-ontology#$1"^^ . "poro" . "^.+$"^^ . "electromagnetic" . . "dramp" . "false"^^ . . "D001151"^^ . "HOMO_3.PE998"^^ . "https://www.disprot.org/$1"^^ . . "Selventa legacy complex namespace used with the Biological Expression Language"^^ . . . . . "false"^^ . . "45539"^^ . "phosphosite.curation" . "OECD TIVA Ontology" . . . . . "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"^^ . . . "microsporidia" . "mcmelek@msn.com" . . "mw.project" . "false"^^ . "http://www.crop2ml.org/cropmdb/$1"^^ . "nfdi4chem" . . . "dna" . "http://www.w3.org/ns/activitystreams#"^^ . "faseb list" . "false"^^ . "false"^^ . . . . . . "AOPWiki (Key Event Relationship)" . . "A structured controlled vocabulary of the development of Drosophila melanogaster."^^ . . . . . . "food" . "genomics" . "https://w3id.org/kim/hochschulfaechersystematik/$1"^^ . . . "database" . . "^\\d{6}$"^^ . . . "sorealt" . "medicine" . "false"^^ . . "napp" . . . "Shorthand representations of languages and their subtypes"^^ . . "mvx" . . . "false"^^ . . . . "receptome.family" . . . "false"^^ . "KEGG BRITE" . "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis."^^ . . "behavior" . "The HoloFood Data Portal centralizes access to datasets from the HoloFood project, which explores host microbiota interactions in salmon and chicken production. It links phenotypic data with microbiome samples and derived genomic resources and therefore simplifies data integration, supporting researchers in multiomics and microbiome studies. The identifiers in the animal semantic space correspond to animals that samples in the database are obtained from."^^ . "https://bidd.group/NPASS/compound.php?compoundID=$1"^^ . . . "https://registry.bio2kg.org" . "genetics" . . "Fab.Schreiber@gmail.com" . "http://purl.org/dcx/lrmi-vocabs/learningResourceType/$1"^^ . "Gene Product Information Schema" . . . . "metascience" . "false"^^ . . . . "insdc" . . "The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world."^^ . "http://purl.obolibrary.org/obo/CIO_"^^ . . "^\\d+$"^^ . "laevis" . "SWEET Ontology Property Energy" . . . . . . . . . . "true"^^ . . . . "diagnosis" . . "^\\d+$"^^ . . . . "obo" . "1023371"^^ . "astrophysical body" . . . "https://biopragmatics.github.io/providers/scomp/"^^ . "The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO."^^ . . . "ncbigi" . . "^[a-f0-9]{32}$"^^ . "^\\d+$"^^ . . "life sciences, biology" . "protein trap" . . . "0000190"^^ . "A representation of the variety of methods used to make clinical and phenotype measurements."^^ . "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"^^ . "yperez@ebi.ac.uk" . "Terry.Hayamizu@jax.org" . . "https://ieeexplore.ieee.org/document/$1"^^ . "https://vocabularies.cessda.eu/vocabulary/AggregationMethod?lang=en#code_$1"^^ . . . "Jörg Wicker" . "0000078"^^ . . . . . . "This ontology extends the SAREF ontology for the automotive domain. This work has been developed in the context of the STF 566, which was established with the goal to create four SAREF extensions, one of them for the automotive domain."^^ . . "Q47475003"^^ . "00000003"^^ . "http://addictovocab.org/ADDICTO_$1"^^ . . . . "^\\d+$"^^ . . . . . "rdf" . "ricenetdb.reaction" . . "http://www.pseudomonas.com/feature/show/?locus_tag="^^ . . . . . "http://purl.obolibrary.org/obo/DDANAT_"^^ . "false"^^ . "^NONHSAG\\d{5}$"^^ . . "https://deims.org/sensors/$1"^^ . . . "http://purl.org/ppeo/PPEO.owl#$1"^^ . "small molecule" . . . "^\\d{7}$"^^ . "https://v31.homd.org/genome/genome_description?gid="^^ . . . "http://sweetontology.net/humanEnvirConservation/"^^ . "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q="^^ . "https://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid="^^ . "Internet Engineering Task Force Language Tag" . . "dna" . . "preprints" . "https://www.datanator.info/metabolite/"^^ . . . "http://sweetontology.net/reprSciUnits/"^^ . . "eurovoc" . "Vocabulary Maintenance Standard" . "metadata standardization" . . "Vocabulary to describe an Exif format picture data. All Exif 2.2 tags are defined as RDF properties, as well as several terms to help this schema."^^ . "xco" . . . . . . . _:N7cc8567e7b9c4b9491b7d261867fbb61 "Tom Brennan" . . "engineering" . "The ROSETTA ontology of industrial robotics devices and robotic skills."^^ . . . . "^\\d{7}$"^^ . . "https://vcell.org/biomodel-$1"^^ . . . . "Native"^^ . . "http://thebiogrid.org/"^^ . "LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry."^^ . . . . "false"^^ . . "http://purl.obolibrary.org/obo/ECO_$1"^^ . . . . . . "00098e55"^^ . . "http://www.tdwg.org/standards/642$1"^^ . "Software Package Repositories" . "https://lincs.hms.harvard.edu/db/cells/$1"^^ . "dbgap" . . "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms."^^ . . . "http://purl.org/dcx/lrmi-vocabs/educationalUse/"^^ . . "false"^^ . . "Datanator Gene" . . . "https://www.ncbi.nlm.nih.gov/gene/"^^ . . . . . "jp@senescence.info" . "mbrochhausen@gmail.com" . . . . . "chemistry" . "jla1@sanger.ac.uk" . . . . . "https://amoebadb.org/amoeba/app/record/gene/$1"^^ . "BioStudies database" . . . . . "doap" . . "https://pubchem.ncbi.nlm.nih.gov/bioassay/"^^ . . . . "Animate"^^ . "http://sweetontology.net/propMassFlux/$1"^^ . . "^\\d{7}$"^^ . . . "vcell"^^ . "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records."^^ . "https://nrid.nii.ac.jp/ja/nrid/10000"^^ . . . "KEGG genome" . "false"^^ . "person" . . _:N0355073af05342b5a3ec070f656de831 . "foster@uchicago.edu" . . "true"^^ . . . "chemical biology" . . "zebrafish line" . "antimicrobial peptides" . "false"^^ . "ontology" . "Patrice Buche" . . . . . . "false"^^ . . . . . "https://www.emouseatlas.org/emap/ema/DAOAnatomyJSP/anatomy.html?stage=TS$1"^^ . . "pathway" . . "Ion Channel Electrophysiology Ontology" . "The Vibration Spectroscopy Ontology defines technical terms with which research data produced in vibrational spectroscopy experiments can be semantically enriched, made machine readable and FAIR."^^ . . . . "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id="^^ . "NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role"^^ . . . "https://pharmacodb.ca/datasets/"^^ . . . "statistics" . . . . . . . . "genetics" . "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication."^^ . "trichdb" . . . . "br/1"^^ . "biologic biome" . "Regulation of Transcription"^^ . . "http://bimerr.iot.linkeddata.es/def/building#"^^ . "diagnosis" . "gemet.theme" . "http://ontology.bonsai.uno/core#"^^ . "edgar.wingender@edgar-wingender.de" . . "http://www.treefam.org/family/$1"^^ . "M0001"^^ . "FCHS_301358"^^ . . "BM0456"^^ . . . . "Zachary King" . . . "phenomena" . . . "http://purl.obolibrary.org/obo/FBcv_$1"^^ . "^\\d+$"^^ . "false"^^ . "false"^^ . . . "https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL#"^^ . . "International Classification of Diseases for Oncology" . "false"^^ . . . . . "Cathy H. Wu" . . "false"^^ . . . . "journal" . . . . . . . . . . "biomedical science" . . "true"^^ . . . "EAWAG Biocatalysis/Biodegradation Database enzyme" . "physical" . . . . "sequence" . . "false"^^ . . "gene" . "jimhu@tamu.edu" . . "http://www.w3.org/ns/earl#$1"^^ . "Kalpana Panneerselvam" . . "https://nanbyodata.jp/disease/NANDO:$1"^^ . "TF101014"^^ . . . . "engineering" . . . "http://geneontology.org/docs/gene-product-information-gpi-format/#$1"^^ . . . . "0000072"^^ . . . "^\\d{7}$"^^ . . . . "sopropsm" . "http://sweetontology.net/stateSpectralBand/$1"^^ . . . . "tib.ofm" . "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/"^^ . . . "NIFEXT covers IRIs that were \"external\" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed."^^ . "PerkinElmer cell line collection" . . . . "life science" . "http://vocab.getty.edu/aat/$1"^^ . . . "A unit of a vector graphic for an anatomical entity useful for biological and biomedical informatics applications."^^ . . . . "^DP\\d{5}$"^^ . "IOC: Internet of Construction Ontology" . . "earth science" . . . . "2011"^^ . . "C4"^^ . . "Assigns identifiers to collections of datasets indexed by CELLxGENE.\n\nCELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types."^^ . . . "SWEET Ontology Phenomena Ocean Dynamics" . . . . . "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors."^^ . . "Compluyeast-2D-DB" . . "http://search.sisuproject.fi/#/variant/$1"^^ . . "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1"^^ . . . "obo" . . "sweet.phhe" . . "gesis.kategorienschemawahlstudien" . "Foods in FooDB"^^ . "^\\d{7}$"^^ . . . "nlx.qual" . . "NA06.8D"^^ . . "nicolas.terrapon@univ-amu.fr" . "genome" . . "METPO (Microbial Ecophysiological Trait and Phenotype Ontology) provides standardized terms for describing microbial phenotypes, growth characteristics, and culture conditions. It includes classes for growth media, temperature tolerances, pH tolerances, and relationships like \"grows in\" and \"does not grow in\"."^^ . "ontology" . . "A repository of software packages written in Javascript, TypeScript, and related."^^ . "pii" . . . . . . . "A small ontology expressing skills and competencies."^^ . "false"^^ . . "Mouse Developmental Stages" . . . . . "http://purl.obolibrary.org/obo/PCO_$1"^^ . . . . . . . _:N497d930d1b1e475b816ed0c42d021f95 . "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1"^^ . . "http://vivoweb.org/ontology/core#$1"^^ . . "SWEET Ontology Representation Scientific Component" . . . . "drug repositioning" . . . "datasubs@ebi.ac.uk" . "false"^^ . . "civic.sid" . . "electronic health record" . "materials" . "false"^^ . . "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1"^^ . . "false"^^ . "Akt_PKB"^^ . "metadata model" . "^\\d{7}$"^^ . . . . "dmba" . . "life cycle" . . "true"^^ . . . . "http://www.kegg.jp/entry/$1"^^ . . "National Microbiome Data Collaborative" . "Tomohiro Oga" . "false"^^ . . . . . . . "life science" . . . . . . "PeptideAtlas Dataset" . . "false"^^ . "Peter Midford" . "^MF_\\d+$"^^ . . . . . "http://sweetontology.net/reprMath/$1"^^ . . . "Sweet Potato ontology" . . . "false"^^ . . . . . . . . "condition" . . . . . "insdc.sra" . . . . "topics" . "https://www.obofoundry.org/ontology/$1" . . . "genetic variation" . "0000487"^^ . . . "Natural Product Activity and Species Source Database" . "life cycle" . "UR-DBMS Syndrome Finder" . . "CAL0003079"^^ . "A project in the ChemBioSys data platform"^^ . . . . . . . . . . "false"^^ . "15"^^ . . . . . . "false"^^ . . "hgvs" . "m4i" . "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.)."^^ . "https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code="^^ . "relationships" . "https://doulix.com/biomodules/$1"^^ . . . . . "NUI" . "genomics" . . . . "false"^^ . . . . . . "fid move" . . "http://ctdbase.org/detail.go?type=disease&db=MESH&acc="^^ . . . "ontology" . . "Tianyi Zhao" . "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure"^^ . . . "https://www.dsmz.de/collection/catalogue/details/culture/$1"^^ . . . "Codon Usage Tabulated from GenBank" . . . "ocean feature" . "dataplant" . "http://sweetontology.net/phenCycleMaterial/"^^ . . . . "http://purl.obolibrary.org/obo/XCO_"^^ . . "https://purl.org/ontology/modalia#$1"^^ . . . . "false"^^ . "CohesinDB gene" . . "https://purl.org/linsearch/"^^ . "false"^^ . "developmental biology" . . . . "nutritional science" . . "http://rs.tdwg.org/format/$1"^^ . . . . "genome" . . . . . "climate" . . . "pathway" . . "concentration" . . . . . . . "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" . "http://purl.obolibrary.org/obo/VSMO_"^^ . . . . "Thomas Keane" . . . "BugBase Expt" . . . . . "The TIB Terminology Service is an instance of the EBI OLS." . . . _:Nfc443a99124748de8fe3fd831d501526 "tuco@berkeley.edu" . "isSupplementedBy"^^ . _:N44157c7dd5d14a279fc29eada7d31c92 "Vivian Lee" . "http://purl.obolibrary.org/obo/VIBSO_$1"^^ . . "gene" . . . . . . "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1"^^ . . "https://bioregistry.io/resolve/github/pull/$1"^^ . "false"^^ . . "false"^^ . "http://www.wikidata.org/entity/"^^ . "ontology" . . . . . "foundational ontologies" . "^([a-zA-Z]+-)?\\d+(\\.\\d)?$"^^ . "http://www.begdb.com/index.php?action=oneMolecule&state=show&id="^^ . . "geodesy" . . . . "false"^^ . "https://awi.cuhk.edu.cn/dbAMP/information.php?db=dbamp_"^^ . . "hasDbXref"^^ . "jupp@ebi.ac.uk" . "false"^^ . "FuTRES Ontology of Vertebrate Traits" . . . . . . . . . . . . . . "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments."^^ . . . . . "AnimalWaste"^^ . "^\\w\\d+$"^^ . "Rosemary Shrestha" . . . "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it."^^ . . . . "http://sweetontology.net/realmAtmo/$1"^^ . . . . . "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . . . "materials" . "ensembl.bacteria" . "true"^^ . . "https://saref.etsi.org/saref4bldg/$1"^^ . . "sorepsu" . "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions."^^ . . . . "https://www.wormbase.org/db/seq/protein?name=$1"^^ . "mirnao" . "cgsc" . "false"^^ . "g.gkoutos@gmail.com" . "https://www.kazusa.or.jp/rouge/gfpage/"^^ . "true"^^ . "http://purl.obolibrary.org/obo/DC_CL_$1"^^ . . . "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA."^^ . . "state time frequency" . . . . "KIM School Subjects" . . "https://transyt.bio.di.uminho.pt/reactions/$1"^^ . . "Publisher short codes appearin in the NLM Catalog."^^ . "Q9UKQ2"^^ . . "Distributed Archives for Neurophysiology Data Integration" . . "false"^^ . . . . . "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2"^^ . . . . "small molecule" . "https://web.www.healthdatagateway.org/dataset/"^^ . "A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources."^^ . . . "tair.gene" . "A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO."^^ . . "^rxn\\d+$"^^ . "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id="^^ . "gthayman@mcw.edu" . . . . . "mex" . "Unimod protein modification database for mass spectrometry" . "gomfid" . "Collagen Mutation Database" . "00000000"^^ . . . "ontology" . . "SWEET Ontology Phenomena Geologic" . . . . "Pierre Baldi" . "insdc.cds" . . . "http://purl.obolibrary.org/obo/AEON_"^^ . . "BiGG Metabolite" . . . "Wormpep" . . . "^\\d+$"^^ . . . . . "materials" . . . . . . "http://sweetontology.net/humanTransportation/"^^ . . . . "nfdi4ing" . . . . . "false"^^ . "reaction data" . . "http://sweetontology.net/reprMathOperation/$1"^^ . . "AlternateName"^^ . "26957"^^ . "computer science" . . . "identifier of a journal in Dialnet"^^ . "chemistry" . . . . . . "http://sweetontology.net/realmAtmoBoundaryLayer/$1"^^ . . . . "false"^^ . "false"^^ . . "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"^^ . "Research Resource Identification" . . . "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_"^^ . . . . "Prefix.cc" . "human geography" . "ega.study" . "Identifier for a species on the noaa fisheries website"^^ . . . "^\\d+$"^^ . . . "isfinder" . "helpdesk@cropontology-curationtool.org" . "John Westbrook" . . . "http://sweetontology.net/reprSciComponent/$1"^^ . . . . . . "PS00001"^^ . . "^\\d{7}$"^^ . "Molecular Modeling Database" . "identifier for an article/paper at the SSRN"^^ . . "Search the world's most comprehensive index of full-text books."^^ . . . . . "^\\d{7}$"^^ . . "http://sweetontology.net/stateThermodynamic/"^^ . "ontology" . "obo" . . . . "Health Canada Drug Identification Number" . "mentions" . "dna" . . "AgeostrophicWind"^^ . . "https://cropontology.org/rdf/CO_367:"^^ . . . . . . "biomodels.teddy" . "GCF_000005845.2"^^ . . . . . "sweet.repmo" . . . . . "Adnan Malik" . "Event (INOH pathway ontology)" . "wikipathways.types" . "^[A-Z]+[0-9]+$"^^ . . "https://w3id.org/gaidet/"^^ . "gene" . . "^\\d+$"^^ . "Giacomo Lanza" . "micro" . . "Assimilation"^^ . . . . . "false"^^ . "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)."^^ . . "materials" . "false"^^ . "canBePerformedBy"^^ . . . . . "mass" . . . "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)" . . "Ontology of Precision Medicine and Investigation" . "http://purl.obolibrary.org/obo/PPO_"^^ . "^\\d+\\w?$"^^ . "false"^^ . . . . . "Gene Expression Analysis Resource" . "sorepsmo" . . . . "expression data" . . . . "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system."^^ . . "false"^^ . . "obo" . "Identifiers for chemicals used as solvents in SupraBank"^^ . . "0000060"^^ . . "nfdi4energy" . "https://awi.cuhk.edu.cn/dbAMP/information.php?db=dbamp_$1"^^ . "knapsack" . . . . "Person"^^ . . . "http://purl.obolibrary.org/obo/EMAP_$1"^^ . "0000001"^^ . "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals."^^ . . . . . . "environmental science" . "COSMIC Cell Lines" . . . . . "anatomy" . . "Hölzel Diagnostika" . . . . . . . . "life science" . . . . . . . . . "structure" . . "02dacc42-ea46-48fb-a4df-7a875d801086"^^ . . . . . . "mpjensen@buffalo.edu" . . . . . . . "false"^^ . "Pigeonpea ontology" . . . . "fid baudigital" . "obo" . "life science" . "BCRTi001-A"^^ . . . . . . "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland."^^ . "ogms" . "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId="^^ . . . "handle" . "sweet.marocki" . _:N5a1da31ab22f4870b69675945b3bd40b . . "embryonic stem cell" . "Accept"^^ . "clinical trials" . "It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Basin"^^ . . . "Bgee organ" . . "OMIMPS" . . . . . . "ontology" . . . "Ximbio" . "Person" . . . "5UTR_107_ENST00000517291.2"^^ . . . . "co_345" . "sweet.reaofl" . "false"^^ . . "chemistry" . . "medical informatics" . "false"^^ . . "^\\d+$"^^ . "ontology" . . . "strain" . . . . "ftp://hgdownload.cse.ucsc.edu/goldenPath/"^^ . . . "delegation" . . . . . "geonames.ontology" . . . . . . "biocatalogue.service" . . "plant phenotypes and traits" . . . "neurobiology" . . . "stweedie@ebi.ac.uk" . "Yvonne Bradford" . "^\\d{7}$"^^ . . "false"^^ . . . . . . . "0000144"^^ . "0000003"^^ . . . . . . . "csv"^^ . "An ontology describing the anatomical structures and characteristics of Porifera (sponges)"^^ . . "Abrasion"^^ . . "representation space" . . . . . "ChemPro Probe" . . "^\\d{7}$"^^ . "^\\d{7}$"^^ . . . "http://purl.org/dc/terms/"^^ . "wot.security" . "false"^^ . "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information."^^ . . _:Nfda90a1d2aff4523add49febd05f27c6 "tuco@berkeley.edu" . . . "realm" . . "w3c rec" . "false"^^ . . . "sweet.huj" . . "obo" . . "domain" . "cstr" . . "^DBCAT\\d+$"^^ . . . . . "ontology" . . "https://data.chembiosys.de/models/$1"^^ . . . . . "false"^^ . . "SWEET Ontology Realm Land Tectonic" . "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds."^^ . . "Pierre.Cosson@unige.ch" . . "AbyssopelagicZone"^^ . . . "life science" . . "https://www.metanetx.org/equa_info/"^^ . "https://ieeexplore.ieee.org/author/"^^ . . "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein."^^ . "28463"^^ . . "digital planning and construction" . . . . "Database of Escherichia coli Sequence and Function" . . "py.vandenbussche@gmail.com" . "^\\d+$"^^ . "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles."^^ . "^\\d{7}$"^^ . "gene" . . . . "Clare Pilgrim" . "false"^^ . . . . "http://purl.obolibrary.org/obo/CL_$1"^^ . "Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)"^^ . "nfdi4ing" . . "true"^^ . "obo" . . . . "usda.cvb.pcn" . . . "http://www.cidoc-crm.org/cidoc-crm/"^^ . . . . . . "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats."^^ . . . . "0005147"^^ . "false"^^ . . "http://purl.obolibrary.org/obo/CIDO_$1"^^ . . . . . . . . "GM17027"^^ . . "digital planning and construction" . . _:N780e155af7bd43458e18aa54e7fbabed "David J. McLaughlin" . . . "MassIVE" . . " http://edamontology.org" . . "dbSNP Reference SNP number" . "ncbiortholog" . . . "http://purl.org/dc/dcam/"^^ . "Identifiers for synthetic binding protein-target complexes, detailing their components, 3D structures and docking statistics"^^ . . "Adrian Pohl" . . . "00001234"^^ . "IA"^^ . . "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. "^^ . "http://purl.obolibrary.org/obo/STATO_$1"^^ . . . . . . "^rx[0-9]{5}$"^^ . "genome" . "biomagresbank" . . "3905431"^^ . "false"^^ . . . "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code="^^ . "OBO Foundry" . . "Apple Ontology" . "Ontology for computer aided process engineering" . . "false"^^ . "KEGG.COMPOUND" . "biology" . . . . . "people/11035"^^ . "sequence" . "0000012b-5661-2f63-2f73-b43980000000"^^ . . "http://purl.obolibrary.org/obo/EPIO_"^^ . "Protein Interaction Network Analysis" . "medicinal chemistry" . . "ontology" . "CIDOC Conceptual Reference Model" . . . . . . . "wlmo" . "https://www.yeastgenome.org/locus/"^^ . . . . "omics" . "http://sweetontology.net/procWave/$1"^^ . "complexportal" . "kim.amb" . . . "animal husbandry" . "Chemistry resources"^^ . "cohd" . "Gavin H. Thomas" . . "oboe" . "With the DataPLANT biology ontology (DPBO), DataPLANT provides an intermediate ontology that acts as a broker and bridge between the individual researcher/domain experts and main ontology providers. DPBO enables easy and agile collection of missing vocabulary as well as relationships between terms for (meta)data annotation using DataPLANT’s Swate tool."^^ . . "pav" . . "MetaNetX chemical" . "storedb.study" . . . . "false"^^ . . . . "This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI)."^^ . "https://www.kegg.jp/pathway/"^^ . . "anatomy" . "model organisms" . "https://bioregistry.io/abcam:"^^ . . "The HuBMAP donors dataset contains demographic and clinical metadata for individuals who donated tissue samples. Each donor has a unique identifier used to link them to their associated tissue samples and derived experimental data."^^ . . "https://vocabularies.cessda.eu/vocabulary/SummaryStatisticType?lang=en#code_"^^ . "false"^^ . "false"^^ . . "knowledge and information systems" . "UTRdb" . . . . "genome" . . . "0000574"^^ . "sty" . "health sciences" . "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1"^^ . . . "Dewey Decimal Classification" . . "false"^^ . . . . . . . . . "The Building Topology Ontology (BOT) is a minimal ontology for describing the core topological concepts of a building."^^ . "4779"^^ . "^(\\w+(\\-\\w+)?(\\.\\w+)?\\/?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$"^^ . . . . . "preclinical studies" . . . . . . "Graphic Descriptor Ontology" . "biology" . . "0778"^^ . . "ontology" . . . . . . "biology" . "sorelph" . . "false"^^ . . . "ontology" . . "^\\d+$"^^ . . . . . "http://sweetontology.net/phen/"^^ . "SWEET Ontology Human Research" . . . "itiswebmaster@itis.gov" . . "phenology" . . . . . . . "https://biocomputeobject.org/BCO_"^^ . "true"^^ . "http://www.phosphosite.org/siteAction.do?id="^^ . . . . "phenomena" . "false"^^ . "^\\d{6}$"^^ . "false"^^ . . . . . . . . "JWS Online" . "https://www.scopus.com/sourceid/$1"^^ . . . _:N93b10efb82ee47a0a17f0ee9975c4cc2 "evorao@evora-project.eu" . . "false"^^ . . . . "chemical" . "https://pubchem.ncbi.nlm.nih.gov/bioassay/$1"^^ . . . . "Cell Biolabs cell line products" . . "https://nfdi4culture.de/id/$1"^^ . . . . "0000204"^^ . "https://data.chembiosys.de/assays/$1"^^ . . . "nfdi4chem" . . . . "false"^^ . "Open Graph protocol" . . . "compound" . . . . "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"^^ . "MatrixDB" . . "Morphological and physiological measurement records generated from clinical and model organism research and health programs."^^ . "communication science" . "tib" . "International Classification of Diseases, 9th Revision, Clinical Modification" . . . . . . "^.+$"^^ . . . . "http://scicrunch.org/resolver/SCR_"^^ . "ArrayMap" . "0001"^^ . "https://europepmc.org/article/CBA/$1"^^ . . . . . . "ontology" . . . . . . . "https://www.w3.org/2019/wot/security#$1"^^ . . "synbip.bts" . "LO362836C"^^ . . "agronomy" . . . "NLXRES" . "Brachiaria (forages) ontology TD v5 - Version Oct 2016"^^ . . "life science" . "SWEET Ontology Relationships Chemical" . "brain" . . . "dataplant" . "false"^^ . "^\\d{6}$"^^ . "https://omabrowser.org/oma/hog/HOG:$1"^^ . . . . "ncbibook" . "^\\d+$"^^ . . . . . "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid="^^ . . . "European Paediatric Cardiac Codes" . . . . . "NASA GeneLab" . "pathway" . "SILVA is a resource of aligned ribosomal RNA (rRNA) gene sequences for Bacteria, Archaea, and Eukaryotes.\n\nIt assigns internal, auto-incremented integer identifiers to taxa. However, these identifiers are not persistent nor unique - if the label for a taxon is changed, it assigned a new identifier and the old identifier is removed."^^ . "false"^^ . "genome" . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid="^^ . . . . "nfdi4ing" . "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information."^^ . "Antumbra"^^ . . . . . . . . "ddi.commonalitytype" . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"^^ . . "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites."^^ . . . . "http://purl.jp/bio/4/id/"^^ . . . . . "bigg.compartment" . "data sharing" . . . "gomf" . "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"^^ . "s1000"^^ . "0000054"^^ . . . . "false"^^ . "SWEET Ontology Material Organic Compound" . "chebi" . . . . . . . . . "disease" . "nb100-56351"^^ . . . . "phenotype" . . "atmosphere lightning" . . "https://www.ncbi.nlm.nih.gov/gene/$1"^^ . . "A0001"^^ . . . . . . "ontology and terminology" . "https://www.cameo3d.org/sp/targets/target/"^^ . "nlfff" . . "fcsfree" . "shah.tanay2@northeastern.edu" . "destatis.subject" . "mp" . "SRS086444"^^ . . "^SAMEA\\d{9}$"^^ . "https://bartoc.org/en/node/$1"^^ . . "sequence" . . . . "Lin Huang" . . . "dna" . . . . . . . . "ontology" . . "Unified Code for Units of Measure" . "atc code" . . . "ApiDB_PlasmoDB" . . "modeldb" . . . "false"^^ . . . . . . . "anatomy" . . "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons."^^ . . . "sophatmowm" . . . "false"^^ . . "http://purl.obolibrary.org/obo/AGRO_"^^ . "http://purl.obolibrary.org/obo/WBPhenotype_$1"^^ . . "^\\d+$"^^ . . "MicrobeamManipulation"^^ . . "Address"^^ . . . "A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project."^^ . "loc.relator" . . "chemistry" . . . . "0000001"^^ . . . . . . . . "WoRMS-ID for taxa" . . "R00100"^^ . . . . . . "dermo" . . "biomedical science" . . "http://www.cathdb.info/cathnode/$1"^^ . . "http://sweetontology.net/reprDataService/"^^ . . "false"^^ . . . . . "sharkipedia.trait" . . "sheriff@ebi.ac.uk" . . "http://www.pocketome.org/files/$1.html"^^ . . . "pepbank" . "gene" . . "obo" . . . . . "taxonomy" . "^\\d+$"^^ . "http://hdl.handle.net/$1"^^ . "hydrosphere" . . . . "http://purl.obolibrary.org/obo/HAO_"^^ . "life science" . . . . "small molecule" . "ontology" . "^\\d+$"^^ . "representation data model" . . "Klassifikation für interdisziplinäre Forschungsfelder im Rahmen des Kerndatensatz Forschung"^^ . . "genetic construct" . . . . . . . . . "NMR Restraints Grid" . "lrmi.educationalaudiencerole" . "false"^^ . . "taxon" . . "biology" . "1948"^^ . . . . . "microbial" . "ontology" . . . . . "false"^^ . "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#"^^ . . "SWEET Ontology Realm Astrophysical Heliosphere" . "^E(S|D)i\\d+-\\w$"^^ . . . . . . . "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."^^ . . . "https://bioregistry.io" . "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query="^^ . "SKOS concept collections held in the NERC Vocabulary Server. A concept collection is useful where a group of concepts shares something in common, and it is convenient to group them under a common label. In the NVS, concept collections are synonymous with controlled vocabularies or code lists. Each collection is associated with its governance body. An external website link is displayed when applicable."^^ . . . "model" . "^\\d+$"^^ . . "Fossilworks Taxon" . "YAL001C"^^ . . "https://envipath.org/package/$1"^^ . . . "^E\\d+$"^^ . "Sensor, Observation, Sample, and Actuator Ontology" . "obo" . "Vitro Application Ontology" . . "ontology" . . . "Protocol for Web Description Resources (POWDER) Schema" . . "The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources."^^ . "obo" . "nfdi4ing" . . . "miapa" . "false"^^ . "https://envipath.org/package/"^^ . . . "https://vocabularies.cessda.eu/vocabulary/CommonalityType?lang=en#code_$1"^^ . . . . . "genome" . . "false"^^ . "false"^^ . . "0000512"^^ . . "Selventa Diseases" . "s4bldg" . . . "unipathway.compound" . "ess" . . "http://purl.obolibrary.org/obo/ECOCORE_$1"^^ . "protein" . . "life science" . "http://cell-lines.toku-e.com/Cell-Lines_$1.html"^^ . "UPISO" . . . . . . . "false"^^ . . . . "alignment" . . . . . "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."^^ . . . . . . "mark@gersteinlab.org" . . . "LNCRNADB" . . . . . "false"^^ . . "FDB002100"^^ . "https://www.arabidopsis.org/servlets/TairObject?type=locus&name="^^ . . "false"^^ . . . "false"^^ . "space distance" . "biomedical science" . "institution" . . "https://osdr.nasa.gov/bio/repo/data/hardware/"^^ . . "SARGON (SmArt eneRGy dOmain oNtology)" . . "CCDS12976"^^ . "api" . . "obo" . "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1"^^ . "health science" . "https://www.ncbi.nlm.nih.gov/protein/"^^ . . "iCalendar in RDF" . . "sfam" . "AEO_RETIRED" . "Theiler stages (TS) define mouse development by a set of morphological criteria ([Theiler, 1989](https://doi.org/10.1007/978-3-642-88418-4)). This staging scheme is used because embryos at the same gestational age can have developed at different rates and therefore exhibit different morphological characteristics. Theiler stages may in some cases correspond to a single gestation age, but more often cover a range of ages. (from [https://www.informatics.jax.org/glossary/theiler](https://www.informatics.jax.org/glossary/theiler))"^^ . . "SWEET Ontology Material Elemental Molecule" . "Simon Cox" . . . "false"^^ . . "knockout" . . . . . "http://sweetontology.net/phenGeolFault/"^^ . "http://purl.org/phylo/treebase/phylows/study/$1?format=html"^^ . "a.kranz@fz-juelich.de" . . "false"^^ . . "Vocabulary used in the RDF representation of SBML models."^^ . . "genome" . "pubchem.compound" . . . . . . . "https://w3id.org/aio/$1"^^ . "nawrocke@ncbi.nlm.nih.gov" . . "abdelmoneim.desouki@tu-darmstadt.de" . . "sorepsl" . . . . "https://www.ncbi.nlm.nih.gov/sra/"^^ . "ess" . "phenotype" . "fid baudigital" . . "social policy" . . "natural science" . "dataplant" . . . . "software and information systems" . "3304"^^ . . "traffic engineering" . . "prediction" . "wbphenotype" . . "Dialnet article ID" . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for FAIRagro" . "ontology" . . . "GT10"^^ . "https://bioportal.bioontology.org/" . "http://purl.org/goodrelations/v1#"^^ . "http://www.w3.org/ns/shex#"^^ . . . "false"^^ . . "nfdi4cat" . . "http://rebase.neb.com/rebase/enz/$1.html"^^ . . . "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id="^^ . . "Evgeny M Zdobnov" . "false"^^ . "12929"^^ . . . "pathway" . "obo" . . "plant genetics" . "NeuroMorpho" . . "Adam Godzik" . . . . . "false"^^ . "A set of controlled vocabularies in the Data Documentation Initiative, each of which has its own code."^^ . . . "false"^^ . "cls" . . . . "false"^^ . "resource metadata" . . "gold.genome" . "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"^^ . . "http://sweetontology.net/realmAstroStar/$1"^^ . . . "https://www.emouseatlas.org/emap/ema/DAOAnatomyJSP/anatomy.html?stage=TS"^^ . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4Biodiversity" . "NFDI Core Ontology" . "signor" . "sweet.relsp" . . "resid" . "Cell Version Control Repository" . "fid baudigital" . . . "48439"^^ . "ontology" . . . "http://metnetonline.org/browse_pathway2.php?pthID="^^ . . "false"^^ . "LL379-9"^^ . . . "mesh.vocab" . . "pathbank" . . "deletion" . "https://pathbank.org/view/"^^ . "FAIR Vocabulary" . "Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains."^^ . . . "functional genomics" . "kegg.orthology" . "ACYPI000159"^^ . . . . . . . . . . . "SNOMED" . . "Coriell Institute for Medical Research" . . "Ontology for Nutritional Epidemiology" . "https://www.arabidopsis.org/locus?accession=$1"^^ . "mammalian" . "meetings" . "100"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry 3D"^^ . "^[a-f0-9]{32}$"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Soil"^^ . "AirPollution"^^ . "obo" . "0000171"^^ . . . "BatchelorC@rsc.org" . "false"^^ . "sostth" . . "http://purl.bioontology.org/ontology/HCPCS/$1"^^ . . "AcousticSensor"^^ . "53784"^^ . . . "bioregistry.schema" . "^\\d{7}$"^^ . "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid="^^ . . "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant."^^ . . . "rrid" . . . . "LOC_Os02g13300"^^ . . . . . . "^\\d+$"^^ . "genome" . . "false"^^ . . . . "Livestock Breed Ontology" . . "curriculum" . . . . "AntiBody Sequence Database" . . "Lifecycle Event Type" . . . . . . . "biomedical science" . . . "http://sweetontology.net/propCharge/$1"^^ . "bioinformatics" . "structure" . "false"^^ . . . . "AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages."^^ . "life science" . . . . . . "Victoria K. Jenkins" . "smtifahim@gmail.com" . . . . . . "LIPID_MAPS_class" . "^000\\d{5}$"^^ . . "ISTransbase" . "social science" . "http://sweetontology.net/stateTime/"^^ . . "obo" . . "nfdi4chem" . . "Common Greenhouse Ontology" . "giant.plankton@gmail.com" . "developmental biology" . . "false"^^ . . . . . "obo" . "ENCSR163RYW"^^ . "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$1"^^ . . . "Feature Annotation Location Description Ontology" . . "288"^^ . "transcript" . . . "Gleaning Resource Descriptions from Dialects of Languages" . . "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide"^^ . . . . "ontology" . . "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation."^^ . . "Nikkaji number" . "SWEET Ontology State Biological" . "http://sweetontology.net/phenCryo/$1"^^ . . "ygob" . . "ontology" . . "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)."^^ . "MIMAT0046872"^^ . . . "tsrnadisease" . "http://sweetontology.net/humanTechReadiness/$1"^^ . . . "https://proteininformationresource.org/cgi-bin/resid?id=$1"^^ . "Resources mentioned in \"Sharing biological data: why, when, and how\"" . "NXP" . . . . . . "ClinicalTrials.gov" . . . "tissue" . "Building"^^ . . "http://purl.obolibrary.org/obo/CHEMINF_$1"^^ . "Akhilesh Pandey" . . . "ddi.lifecycleeventtype" . "sekundarstufe_2"^^ . . . . . "psipar" . "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases."^^ . "Will Simpson" . "false"^^ . . "cheminformatics" . . "tree" . "http://tables.pseudogene.org/[?species_name]/$1"^^ . . . "^[A-Z0-9]{5}\\d+$"^^ . . . "Prefixes for ontologies relevant for NFDI4Culture." . "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies."^^ . "protein" . "gene group" . . "false"^^ . . . . . . . . . . "RNA Modification Database" . . "https://fedirect.toolforge.org/?id=$1"^^ . "selventa" . . "NIF Standard Ontology" . "http://purl.obolibrary.org/obo/TAHH_"^^ . . . "agriculture" . . . "^[0-9]{9}$"^^ . "life sciences, biology" . . . . . . "325.4"^^ . "oryzabase.reference" . . "Call for paper topics in EasyChair"^^ . . . "false"^^ . . "https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1"^^ . "bfo11snap" . . "opl" . . "obo" . . "depod" . . "nmrshiftdb2" . "interaction" . "Li7"^^ . . . "grddl" . . . "Torsten Schwede" . "cath" . . "OMA Group" . . . "http://purl.org/gc/$1"^^ . . . "runbiosimulations" . . . . . "co_356" . . . . . "Karen Coyle" . . "SWEET Ontology Property Conductivity" . . . . "ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons."^^ . . . . . . . "https://vocabularies.cessda.eu/vocabulary/rexdatatype?lang=en#code_$1"^^ . . "https://portal.gdc.cancer.gov/cases/$1"^^ . . . . . . "protein" . . "software function" . . "comparative genomics" . "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer."^^ . . "webelements" . . "quantity" . "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype."^^ . "obo" . . . "education level" . . . . . "C. elegans development ontology" . . . "false"^^ . . . "phenotype" . "worm" . "phylogeny" . "elspeth@genenames.org" . . . . . "disease" . "ontology" . "EBI Ontology Lookup Service" . "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." . . . . "false"^^ . "false"^^ . . "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession."^^ . "life science" . . . "phenomena" . . . "^(?:[a-zA-Z]+\\/)?[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . "The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)"^^ . "scopus" . "molecular biology" . "protein" . . "false"^^ . . "NCBI Gene Expression Omnibus" . "Sylvie Ricard-Blum" . "probonto" . . . "false"^^ . . "http://sweetontology.net/propDifference/"^^ . "German Clinical Trials Register" . "https://www.ncbi.nlm.nih.gov/nucest/"^^ . . "ess" . "structure" . . . . . "https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr="^^ . "cell line" . . "cito" . . "https://uts.nlm.nih.gov/uts/umls/semantic-network/"^^ . . . "ontology" . "biology" . . . "hancestro" . "a.39.1.1"^^ . . . "glenn.king@imb.uq.edu.au" . . . . "false"^^ . . . . . "Geomames" . "Office of Scientific and Technical Information (OSTI)" . "JECFA provides identifiers for flavors, food additives, contaminants, toxicants, and veterinary drugs. Each entry includes chemical details, acceptable or tolerable intake limits, and links to related reports and monographs."^^ . . "http://purl.obolibrary.org/obo/SIBO_"^^ . . . "tib" . "http://vocab.getty.edu/tgn/$1"^^ . . "Gemma L. Holliday" . . . . . . . . . . . . "social sciences" . . . "false"^^ . . . . . . "botany" . . "The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan."^^ . . "life sciences, biology" . "^\\d+$"^^ . . . . . . . "obo" . . . "^Os\\S+g\\d{7}$"^^ . . . . "drks" . . . . . "https://bioregistry.io/imgt.hla:"^^ . "single cell" . "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$"^^ . "https://purl.org/sms-ontology#"^^ . . . . "GWAS Central Study" . . "DragonDB Locus" . _:Nbdcd82014053430e907595550f3bcc08 . "eli" . . . "health" . . "http://ctdbase.org/detail.go?type=chem&acc=$1"^^ . . "http://purl.obolibrary.org/obo/CMO_"^^ . . . . . . . . "long-finned-pilot-whale"^^ . "http://purl.obolibrary.org/obo/VTO_$1"^^ . . "https://images.endlessforms.info/collection/$1"^^ . . "http://www.w3.org/2003/11/swrl#"^^ . "NPC139585"^^ . "oae" . . . . "keilbeck@genetics.utah.edu" . . _:Nc15f7115891d4a4685e29fc0441b6669 "MedDRA MSSO" . . "obo" . . . "false"^^ . "^[A-Z]{2}\\d+$"^^ . . "false"^^ . . . . "false"^^ . . "01"^^ . . "ChEBI Integrated Role Ontology" . "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . . "miRBase pre-miRNA" . . . . . "biomedical science" . . . "false"^^ . "epidemiology" . . "http://purl.obolibrary.org/obo/FBbi_$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Fluid"^^ . . . . . . "subtiwiki" . "false"^^ . "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D."^^ . "drug" . . . . . "Guy Perrière" . . "nfdi4ing" . . "false"^^ . . . . "DailyMed" . . . "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules."^^ . "urdbms.syndromefinder" . . . . . . . . . "gene expression" . . "genome" . "sopropt" . . "Pantelis Topalis" . "false"^^ . "researcher" . . "disease course" . . "false"^^ . . . . "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."^^ . "https://ceds.ed.gov/element/$1"^^ . . "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm="^^ . . . . "http://purl.obolibrary.org/obo/RO_"^^ . . . "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"^^ . . . "http://purl.obolibrary.org/obo/"^^ . "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC="^^ . "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time."^^ . . . "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/"^^ . . . . "https://easychair.org/cfp/"^^ . "obo" . . . . . . . . . . "http://www.isni.org/isni/$1"^^ . "hello@vivekkrish.com" . . . "http://www.kegg.jp/entry/"^^ . . . . . . "epidemiology" . . . . . "https://proteinensemble.org/$1"^^ . . "peco" . . "biomedical science" . "fid baudigital" . . "https://scicrunch.org/resolver/RRID:IMSR_TAC_"^^ . "Pierre-Yves Vandenbussche" . . "false"^^ . . . . . . . "nickf@ebi.ac.uk" . "phenotype" . . . . . . . . . "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/"^^ . "anatomy" . . . . . "dataplant" . "Veterans Administration National Drug File" . . . . "^[0-9]+$"^^ . . . . . . . . . "bead62a8-c3c2-46d6-9eb1-ffeaba38d5bf"^^ . . . . "life science" . . "Ardan Patwardhan" . "engineering" . . . . "false"^^ . . . . . "dataplant" . . . "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1"^^ . "false"^^ . "^TIGR\\d+$"^^ . . "^[0-9]{8}$"^^ . . . . "http://worfdb.dfci.harvard.edu/html/index.php?search_type=name&page=showresultrc&race_query="^^ . . . . "false"^^ . . . "Database of biopesticides maintained by the University of Hertfordshire"^^ . "Literature references in the Hymenoptera Anatomy Ontology Portal"^^ . . "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." . . . "Hymenoptera Anatomy Ontology" . . . . . . . . . "http://vocab.getty.edu/page/cona/$1"^^ . "^OSD-\\d+$"^^ . . . "systems biology" . . "life science" . . . . . . . . "The Ontology of units of Measure (OM) 2.0 models concepts and relations important to scientific research. It has a strong focus on units, quantities, measures, and dimensions."^^ . . "ricenetdb.mirna" . . . "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes."^^ . "fair data spaces" . . "Human Phenotype Ontology" . "A hierarchical classification of congenital heart disease"^^ . "0032571"^^ . . . . "false"^^ . "NCBI Genome" . "false"^^ . . . . . . "https://www.thaiclinicaltrials.org/show/"^^ . "https://amoebadb.org/amoeba/app/record/gene/"^^ . "rapdb.transcript" . "cropping systems" . . "Development Data Object Service" . . . "false"^^ . . "gene expression" . "false"^^ . . "SWEET Ontology Realm Land Orographic" . . . . . . . . . . "Chemical Methods Ontology" . "ecology" . . "dip" . "http://purl.obolibrary.org/obo/OGG_$1"^^ . . . . . "semantic web" . "metaproteomics" . "^(data|topic|operation|format)\\_\\d{4}$"^^ . "Dendritic cell" . . . "biomedical science" . . . . . . . "false"^^ . "sorepdf" . "phebert@uoguelph.ca" . . "life science" . "^\\d+$"^^ . . . . "sostsb" . "small molecule" . "false"^^ . . "SWEET Ontology Phenomena Cycle Material" . "research project" . "https://pathbank.org/view/$1"^^ . . . . . . "Mark Engelstad" . . "The standard reference for nomenclature and diagnostic criteria in toxicologic pathology."^^ . . . . . . "0000106"^^ . . . "Reactome" . . . . . "https://aopwiki.org/events/$1"^^ . "^[A-Za-z]+\\/[0-9]+$"^^ . . . "GnpIS" . "microbe-host interaction phenotype" . . . . . . "false"^^ . . . "Matúš Kalaš" . . "https://www.ebi.ac.uk/arrayexpress/arrays/$1"^^ . "https://omabrowser.org/oma/vps/"^^ . . . "CRISP Thesaurus" . . . "false"^^ . . "assetConcepts"^^ . "^[0-9a-f\\-]+$"^^ . . . . "ess" . "true"^^ . "false"^^ . . . "http://purl.org/dc/elements/1.1/"^^ . "A Knowledge Resource for Innate Immunity Interactions and Pathways" . . . "computer science" . . . "sweet.propsdis" . "10.2.1.1.3"^^ . . . "false"^^ . "emapa" . "sweet.maind" . . . . . . "Documentation of the Phenoscape Curation Workflow"^^ . . "d.craik@imb.uq.edu.au" . "Drosophila Genomics Resource Center" . "WBRNAi00086878"^^ . "C0020004/4992"^^ . . "ActiveRegion"^^ . "false"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Dimensionless Ratio"^^ . "sweet.repdsa" . . . . "NIF Dysfunction" . "^[1-9]\\d*$"^^ . "Molbase" . . "rock" . "OntoRXN" . . . "377550"^^ . "earth sciences" . . "false"^^ . . . . . . . . "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:"^^ . . . . "false"^^ . . . . . . . . "https://deims.org/$1"^^ . "computational biology" . "phenotype" . "7943"^^ . . "SR0000178"^^ . . . . . . "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . . "^[1-9][0-9]*$"^^ . . . "^[AEP]-\\w{4}-\\d+$"^^ . "mdm" . "Aspergillus Genome Database" . . . "Oryzabase Reference" . "Polytraits Trait Definitions" . . . "GL50803_102438"^^ . "false"^^ . . "^\\d{7}$"^^ . . "https://www.cytion.com/"^^ . . "transport and kinetic data" . . "om" . . . . . "false"^^ . . . "^\\d+$"^^ . . "oryzabase.gene" . . "http://www.depod.bioss.uni-freiburg.de/showp.php?gene="^^ . . . "protein" . . "ess" . "E4330"^^ . . . "https://bitbucket.org/$1"^^ . "Leafsnap" . . . "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e="^^ . . . "AverageAnnualPrecipitation"^^ . "life science" . . "hms.lincs.antibody" . "functional genomics" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Equipment"^^ . . . . "uo" . "http://www.w3.org/2008/05/skos-xl#"^^ . . "RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project"^^ . . . "curated information" . "false"^^ . "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML)."^^ . . . . . . . . . . . "An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment."^^ . . "sweet.phgf" . . . . . . "https://w3id.org/mixs/$1"^^ . "nsheffield@virginia.edu" . . "FungiDB" . . "130502"^^ . "Actuation"^^ . . "ontology" . . "An investigation in the ChemBioSys data platform"^^ . . "false"^^ . "https://www.metabolome-express.org/datasetview.php?datasetid=$1"^^ . . . "ontology" . . . . . . "Database of Quantitative Cellular Signaling: Pathway" . . . "101-01"^^ . "metabolite" . "A repository of software packages written in Rust."^^ . . . . "https://www.tib.eu/digitrubber#DIGITRUBBER_"^^ . . "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors."^^ . . . "Dublin Core Elements (1.1)" . . "http://purl.obolibrary.org/obo/UBERON_"^^ . . . "https://bioregistry.io/registry/$1" . "http://purl.obolibrary.org/obo/BFO_"^^ . "AURKA"^^ . "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1"^^ . . . "natural science" . . "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1"^^ . . . . . . . "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species."^^ . . . . . . "Chen Yang" . "omics" . . . . "A controlled vocabulary to support the study of transcription in the developing human brain"^^ . . . . . . . . "chemistry" . . . "ATCC(in host)" . "THE1B"^^ . . "https://mediadive.dsmz.de/solutions/$1"^^ . "http://dbpedia.org/property/$1"^^ . "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname="^^ . . "ncbigene" . "edam.data" . "https://mmp.sfb.uit.no/databases/mardb/#/records/"^^ . "nfdi4ing" . . . "bfo11span" . . "^[0-9]+$"^^ . . . "miro" . "^[\\w\\d\\.-]*$"^^ . . . "computational biology" . . . . . . "false"^^ . . . . "miszcz@amu.edu.pl" . "agrkb" . "expression data" . "false"^^ . "SWEET Ontology Realm Atmospheric Boundary Layer" . "GPIb_IX_V"^^ . "ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases."^^ . _:Na47c38a9ea6f404ba7e0892884ae279e "Eric Duchêne" . . . . . "http://sweetontology.net/realmLandCoastal/"^^ . . "nasaosdr.study" . "soproptf" . . "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23"^^ . . . "nfdi4ing" . "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . "systemic neuroscience" . "maglott@ncbi.nlm.nih.gov" . "careerPrizeMoney"^^ . . "interaction" . . . . "http://sweetontology.net/phenSystem/"^^ . . . "vaccine" . "bgee.organ" . . _:N497d930d1b1e475b816ed0c42d021f95 "ICD Helpdesk" . . . "Classification of Transcription Factors in Mammalia" . . "ontology" . "dna" . . . . . "human" . . . . "electron microscopy" . "https://www.facebase.org/data/record/#1/isa:dataset/accession="^^ . . "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" . . "Allan Spradling" . "database" . . "false"^^ . "COI Catalogue" . . . . "classification" . . . . . . "transcript" . . "http://purl.obolibrary.org/obo/AMPHX_$1"^^ . . . . "imaging" . "InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation."^^ . . "http://sweetontology.net/stateDataProcessing/$1"^^ . . "https://s3.us-east-2.amazonaws.com/lg.cede/"^^ . . "http://sweetontology.net/propOrdinal/"^^ . . . "https://biopragmatics.github.io/providers/hog/"^^ . "0003fc3f-1522-4fca-bf3f-bcef0dcec405"^^ . . . . . "https://hub.docker.com/u/$1"^^ . . "https://bioregistry.io/d1id:"^^ . . . "ontology" . "sostdp" . . . . "http://purl.obolibrary.org/obo/PATO_$1"^^ . "true"^^ . . "false"^^ . "MLCommons Association artifacts, including benchmark results, datasets, and saved models."^^ . "sweet.relph" . . . . . "Renato Iannella" . . "life science" . . "s4lift" . . "Ontology for Biobanking" . "^(\\wT?)?\\d{5}$"^^ . . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . . "identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide"^^ . . . . . . "nucleotide" . . . "http://purl.obolibrary.org/obo/OVAE_"^^ . . . "employment" . . . . "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification."^^ . . "jcrb" . . . . "false"^^ . "frbr" . . . . . . . . . . "ontology" . . . . . . "^\\d+$"^^ . . . . "false"^^ . . . . "sweet.hutr" . . "ontology" . . "splash" . "transportdb" . . . . . . . . . . "life science" . . "https://w3id.org/sulo/$1"^^ . . "false"^^ . "ontology" . "634515043"^^ . . "prediction" . . . "fiesta.iot" . . "http://www.w3.org/2003/06/sw-vocab-status/ns#$1"^^ . "http://rdfs.org/ns/void#$1"^^ . . "mice" . "false"^^ . . . . . "nextProt" . . . . . . . . "false"^^ . . "metascience" . . . "biozil" . "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"^^ . "https://medlineplus.gov/genetics/condition/$1"^^ . "bioinformatics" . . "http://bigg.ucsd.edu/models/$1"^^ . "false"^^ . . "lincs" . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . . . . . . "Biolink Model" . . . "Enzo Life Sciences" . "civic.gid" . "ppeo" . "^\\d+$"^^ . "Hiroyuki Ogata" . . . "^\\d{7}$"^^ . "The Prescription of Drugs Ontology" . "http://purl.obolibrary.org/obo/VIBSO_"^^ . "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . . . "false"^^ . . . . . . . . . "200282"^^ . . . "identifier for a species, in the AmphibiaWeb database"^^ . . "The Common Entity Data Standards (CEDS) Domain Entity Schema (DES) provides a hierarchy of domains, entities, categories, and elements. It is intended for use primarily by people as an index to search, map, and organize elements in a logical way. [from homepage]"^^ . . . "National Science Foundation Award" . "clement.jonquet@inrae.fr" . "An issue on the Gene Ontology GitHub issue tracker"^^ . . . "architecture" . . "exo" . "Eschmeyer's Catalog of Fishes" . "spdx" . "http://purl.obolibrary.org/obo/OPL_$1"^^ . "Collection of European paediatric cardiac coding files"^^ . "BioLegend" . "9530"^^ . . "polymat" . . . "http://sweetontology.net/matrInstrument/$1"^^ . "true"^^ . "http://bigg.ucsd.edu/models/universal/reactions/$1"^^ . "engineering" . . . "life sciences, biology" . . "genome-wide association study" . . "Cell line collections (Providers)"^^ . . "false"^^ . . . "drug" . . "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/"^^ . . . . "false"^^ . "protozoan" . . "true"^^ . "7499841"^^ . . . "food" . . . . . "bandrow@gmail.com" . . "false"^^ . . . "http://purl.obolibrary.org/obo/ZECO_$1"^^ . . . . . . . . . "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"^^ . . "true"^^ . "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT="^^ . . "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . . . . . . . "rna" . . "https://db.idrblab.net/ttd/data/target/details/$1"^^ . "mavedb" . . . . . . . . . . "Digital Construction Energy (dices)" . . . "https://bioregistry.io/metaregistry/scholia/"^^ . "Genderal Ontology for Linguistic Description" . . . . "ontology" . . . "1eec8393-e598-41ed-9d8b-6d5b0db94470"^^ . "http://purl.org/spar/doco/$1"^^ . . . . "http://purl.obolibrary.org/obo/MFO_"^^ . "URS0000759CF4"^^ . "12969"^^ . . . . . "http://purl.obolibrary.org/obo/ARO_"^^ . . . "SNOMEDCT_US_2021_09_01" . . . "http://sweetontology.net/phenEcology/$1"^^ . . "Comprehensive hierarchy of extinct and extant vertebrate taxa."^^ . "A vocabulary describing subjects taught in German primary and secondary school (not university/hochschulen), such as German, math, and art."^^ . . . "drug target" . . . "nfdi4ing" . . "http://purl.obolibrary.org/obo/NGBO_$1"^^ . . "Tim Vandermeersch" . "http://purl.obolibrary.org/obo/VO_$1"^^ . . . . . "knowledge and information systems" . "life science" . "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"^^ . "SWEET Ontology Phenomena" . . . . . . "numerical identifier for an author in SciProfiles by MDPI"^^ . "mouse" . . "obo" . "https://w3id.org/kim/schularten/"^^ . . . "Google Patents" . "false"^^ . . "T00148"^^ . . . . "false"^^ . "engineering" . "edeutsch@systemsbiology.org" . "hovergen" . . . . . "Observational Medical Outcomes Partnership" . . . "Gavin Sherlock" . "https://pharmacodb.ca/cell_lines/"^^ . "energy" . "0000081"^^ . . "https://stemcells.nindsgenetics.org?line=$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time"^^ . "http://sweetontology.net/reprSciLaw/$1"^^ . "nfdi4ing" . . "https://goldbook.iupac.org/terms/view/$1"^^ . "sweet.propb" . . "regulation" . "H00076"^^ . "Enabling and Unlocking Biology in the Open" . "^\\d+$"^^ . . "^oai\\:cwi\\.nl\\:\\d+$"^^ . . . "dna" . . . . . . . . "ivdb" . "https://www.ebi.ac.uk/interpro/set/pfam/$1"^^ . . "has URI pattern" . "http://purl.obolibrary.org/obo/SLSO_"^^ . _:Nfc8c39cd0ab54510ab2573fc704b2e67 "NLM Customer Service" . . . . . . . "sonami@riken.jp" . "false"^^ . . . . . . . "http://purl.jp/bio/4/id/$1"^^ . . . "SWEET Ontology Phenomena Atmosphere Precipitation" . . . . . . . . "14"^^ . . "Yeast Phenotype Ontology" . . "gene name" . . "A vocabulary in LOV gathers definitions of a set of classes and properties (together simply called terms of the vocabulary), useful to describe specific types of things, or things in a given domain or industry, or things at large but for a specific usage. Terms of vocabularies also provide the links in linked data, in the above case between a Person and a City. The definitions of terms provided by the vocabularies bring clear semantics to descriptions and links, thanks to the formal language they use (some dialect of RDF such as RDFS or OWL). In short, vocabularies provide the semantic glue enabling Data to become meaningful Data. [from https://lov.linkeddata.es/dataset/lov/about]" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Band"^^ . . "PPJ_100024"^^ . "Statistical Torsional Angles Potentials" . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4Microbiota" . . . . . . "BRAF"^^ . . "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Geospatial"^^ . "false"^^ . . . . "https://dini-ag-kim.github.io/amb/20231019/#$1"^^ . . "This prefix is for FDA application identifiers. There are multiple types of FDA applications (https://www.fda.gov/drugs/how-drugs-are-developed-and-approved/types-applications), including New Drug Application (NDA). FDA.report provides access to all FDA databases, including applications, in a single portal, and can resolve FDA application identifiers."^^ . . "ctd.gene" . . "https://www.rrrc.us/Strain/?x=$1"^^ . . . . . . "regulation" . . . "life science" . "http://cegg.unige.ch/orthodb/results?searchtext="^^ . "https://w3id.org/mobilitydcat-ap/mobility-theme/$1"^^ . . . . "https://vocab.lternet.edu/vocab/vocab/index.php?tema="^^ . "bams" . . "SARGON (SmArt eneRGy dOmain oNtology) is an open-source effort to define semantic descriptions of the smart assets in building automation and smart grid and the relationships between them. SARGON consists of an extensible dictionary of terms and concepts in and around building and smart grid, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of SARGON with existing tools and databases. Through the use of powerful Semantic Web technology, SARGON can describe the broad set of Devices and custom features, assets and subsystems found across the building stock in a consistent matter."^^ . "A subspace of Metabolic Atlas for reactions."^^ . . "^\\d+$"^^ . "http://www.knapsackfamily.com/knapsack_core/information.php?word="^^ . . . "genetic variant" . "fair data spaces" . "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories."^^ . . "An ontology for representing the provenance of scientific claims and the evidence that supports them."^^ . . "bioschemas_draft" . . . . . "false"^^ . "Tzong-Yi Lee" . . "humanities" . "ESi007-A"^^ . "502930"^^ . "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1"^^ . . . . . "http://sweetontology.net/matr/$1"^^ . . . . . "Browser for the periodic table of the elements"^^ . "http://degradome.uniovi.es/cgi-bin/protease/"^^ . "package/8ca67504-3167-4cc8-ba74-98137bb7cd0a"^^ . . . . "false"^^ . . . "chembl.cell" . . "http://bigg.ucsd.edu/compartments/$1"^^ . . . "http://www.kegg.jp/entry/"^^ . . "sohukd" . . . . . . . . "biomedical science" . . . . . "biomedical science" . "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp="^^ . "https://www.wormbase.org/get?name=$1"^^ . . "^\\d{7}$"^^ . . . . "false"^^ . "biology" . . _:N593ed5d2743643918abbcc6dbd3eece0 . . . "Common Anatomy Reference Ontology" . . . "Software Functions Ontology" . "classification" . "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone="^^ . "http://www.w3.org/2007/05/powder-s#"^^ . . . . "http://www.semanticdesktop.org/ontologies/2007/03/22/nco#"^^ . "gtdb" . . "https://dialnet.unirioja.es/servlet/articulo?codigo=$1"^^ . . . "1.1.1.1"^^ . . "knowledge and information systems" . . . "laml_tcga_pub"^^ . . "UniProt Archive" . . . . "http://purl.obolibrary.org/obo/EHDAA2_$1"^^ . "fairmat" . "https://d-nb.info/standards/elementset/gnd#$1"^^ . . . . . "Pierre-Marie Allard" . . . . . . "mechanical engineering, energy technology" . . . . "radiology" . "sostsl" . . . . . . "biomedical science" . "latitude"^^ . . "molecular biology" . . . . . . . . "Mental Functioning Ontology" . . . . "false"^^ . . . . . . "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides."^^ . "109082"^^ . "KEGG Compound" . . "MobiVoc Open Mobility Vocabulary 1.1.4" . "Plant Anatomy Ontology" . "0000001"^^ . . . . . . . . . . "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively."^^ . . . "false"^^ . "Dominik Martinat" . "deficiency" . . . . . . "sohuj" . . . . "molecular biology" . . "taxonomy" . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Thermodynamic"^^ . "https://lincs.hms.harvard.edu/db/proteins/$1"^^ . "obo" . "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . . . "Unipathway" . "phenolexplorer" . . . "mircoRNA Gene Database is a collection of animal microRNA genes. This database allows researchers to analyze mircoRNA properties like secondary structure and features in a phylogenetic context."^^ . . "The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs."^^ . "Web of Things Security Ontology" . . . "P10636"^^ . "modeldb.concept" . . . . . . "http://data.loterre.fr/ark:/67375/N9J$1"^^ . . . "Kenan Azam" . . "icd9" . . "rs121909098"^^ . "BalanceEquation"^^ . . . . . . . . . . . "ontology and terminology" . . . . . . . . . . . "developmental biology" . "applied microbiology" . . . . . "SWEET Ontology Property Function" . . . "https://data.4dnucleome.org/experiment-set-replicates/"^^ . . . "https://smid-db.org/smid/"^^ . "^\\d+$"^^ . . "^\\d+$"^^ . "https://reaxys.emolecules.com/cgi-bin/more?vid="^^ . "antimicrobial peptides" . "Cell line databases/resources"^^ . . . . . "false"^^ . "This subject heading system has beeen developed for use in FID BAUdigital and its future web services. It covers scientific fields of Civil Engineering, Architecture and Urban Studies with a special section on digitization. This subject classification has been mapped to several other classification systems. The latest version of the subject classification including these mappings is available at https://gitlab.com/fid-bau/terminologie/fid-baudigital-faecherklassifikation/-/raw/main/Subject_Headings_all_mappings.owl."^^ . . . . . "false"^^ . . "^DI-\\d{5}$"^^ . . . "CIViC Therapy" . . . . . . . "gpcrnava" . . . "biology" . "GND ID" . "http://purl.obolibrary.org/obo/DINTO_$1"^^ . "false"^^ . . . "http://iirds.tekom.de/iirds/domain/machinery#$1"^^ . . . . . . . . . . "false"^^ . "bibo" . . . . . . "ChemBank" . . "http://genomics.senescence.info/diet/details.php?id="^^ . . . . "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."^^ . "https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/"^^ . "http://sweetontology.net/matr/"^^ . "uniprot.var" . . "rwinslow@jhu.edu" . . . "drugbank.category" . . . . "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_"^^ . "symp" . "Metabolome Express" . "Node Package Manager" . . . "BRENDA Enzyme" . . "Yaroslav Halchenko" . . . . "http://purl.obolibrary.org/obo/MICRO_$1"^^ . . . . . . "plo" . . . "false"^^ . . "false"^^ . "Nisha Sharma" . "Exif data description vocabulary" . . _:N7b8becabf25240b8937b97771cfddab1 "hajo.rijgersberg@wur.nl" . "https://www.ebi.ac.uk/metagenomics/projects/$1"^^ . "https://knowledge.lonza.com/cell?id=$1"^^ . "sweet.strt" . "fid baudigital" . "biology" . . . "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates."^^ . "k-12 teacher" . . . . "^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$"^^ . . . "https://id.loc.gov/authorities/"^^ . . "http://sweetontology.net/stateTimeFrequency/$1"^^ . "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx)." . . "dr.sebastian.koehler@gmail.com" . "The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).\n\nThe lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.\n\nOntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).\n\nMore information can be found at https://obofoundry.org/ontology/ontoavida.html"^^ . "life cycle" . "AngularExtent"^^ . . . . . . "CHEBI" . . . . "semapv_voc" . . "genomics" . "fid baudigital" . . . . . . . . . _:N1da553f8ac70412490c7040bee9cdf57 "The World Health Organization" . "^\\d+[a-d]?$"^^ . "life science" . "rx00408"^^ . "https://emea.discoverx.com/catalog/"^^ . "ontology" . . . "interaction" . "protein" . "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1"^^ . "false"^^ . . "false"^^ . . . . . . "http://bigg.ucsd.edu/models/"^^ . "https://europepmc.org/article/ppr/"^^ . . . . . . "9"^^ . "obo" . "genecards.genenote" . "biopixie" . . . . "^\\d{7}$"^^ . . "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$"^^ . "http://purl.org/spar/biro/"^^ . . "disease" . . . . " orographicland" . . . . . . "assay" . . . . . . "binding" . "PMC" . "obo" . "co_323" . "https://www.eionet.europa.eu/gemet/en/theme/$1"^^ . . . . "false"^^ . "http://sweetontology.net/prop/"^^ . . . "false"^^ . . "http://www.hprd.org/protein/"^^ . . "protein" . . "false"^^ . . . "ecto" . . . . . . "^\\d+$"^^ . . . . "false"^^ . . . . _:N593ed5d2743643918abbcc6dbd3eece0 "iisinfo@cdc.gov" . . . . . . "^\\d+$"^^ . "http://www.scancerrna.com/toDetail?id=$1"^^ . . . _:N2bd152f97ac44757940d144d931894a5 "Gary O'Neall" . . "78"^^ . "stap" . . "0000005"^^ . . "false"^^ . . "^\\d+$"^^ . . _:N1da553f8ac70412490c7040bee9cdf57 "info@who.int" . "LifeWatch Metadata Catalogue" . . "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards."^^ . "Rat Strain Ontology" . . "GR_QTL" . . . . . . . "software engineering" . "^4DN[A-Z]{2}[A-Z0-9]{7}$"^^ . "henrich@embl.de" . . . . . "geno" . . "^\\d+$"^^ . . . . "scopus.affiliation" . . . . . "https://discover.pennsieve.io/package/"^^ . . "^\\d{7}$"^^ . . . . "life science" . . . . "wikipathways.gpml" . "obo" . "false"^^ . . . . . . "^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$"^^ . "2404"^^ . "false"^^ . "false"^^ . "false"^^ . . "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process."^^ . . . . "hasOpenAccessRating"^^ . "http://purl.obolibrary.org/obo/IOIO_"^^ . . . . . . "gene set" . . . "Fischertechnik Ontology" . . "genetic" . . . . "^\\d{6}(-\\d+)?$"^^ . . . "c"^^ . "UniProt Cross-ref database" . "141"^^ . . "interaction" . "nfdi4cat" . . "Q13485"^^ . . . "sweet.phatmopc" . . "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa."^^ . "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac="^^ . . . "^\\d+$"^^ . "NOR00681"^^ . "This ontology extends the SAREF ontology for the water domain. This work has been developed in the context of the STF 566, which was established with the goal to create three SAREF extensions, one of them for the water domain."^^ . . . "BioKC" . "https://www.cienciavitae.pt/$1"^^ . "false"^^ . . "false"^^ . . . . . . . "^\\d+$"^^ . "pmads" . . . _:N64ae372b64af4fc1bb11bc74a7c8dd87 "txellmgsol@gmail.com" . "Database of the dielectric properties of biological tissues."^^ . "104674"^^ . . . . . . . . "Intrinsically Disordered proteins with Extensive Annotations and Literature" . . "The Audio Commons Ontology" . . "hco" . "transcriptomics" . "http://purl.org/goodrelations/v1#$1"^^ . "An application ontology for use with miRNA databases."^^ . "rna" . . "http://sweetontology.net/reprDataServiceAnalysis/$1"^^ . . . . "https://nmrxiv.org/project/$1"^^ . "Capacitance"^^ . "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies."^^ . "0001157"^^ . "false"^^ . . "ChEMBL_ID" . . . . . "video resource" . . . . "gnomad" . "^AB\\d+$"^^ . . . . . . . . "Ontology for General Medical Science" . . "false"^^ . . . "classification" . . "http://purl.obolibrary.org/obo/VHOG_"^^ . "19210-3"^^ . "address on the Mastodon decentralized social network (the form is 'user@server.domain' without a leading '@')"^^ . . . . "Docker repository hosted on Docker Hub"^^ . . "https://www.jax.org/strain/$1"^^ . "false"^^ . "https://civicdb.org/links/gene/"^^ . . . "obo" . "occ" . . "ASTD" . "0000021"^^ . . . . "https://www.inaturalist.org/taxa/"^^ . "false"^^ . . . "pmap.cutdb" . . . . "gamete" . . "0000447"^^ . "International Classification of Functioning, Disability and Health" . "Dataset"^^ . . "https://pdc.cancer.gov/pdc/study/"^^ . . . . . "life science" . "jmedina@ebi.ac.uk" . "obo" . "^[a-zA-Z]+-[a-zA-Z0-9()]+(-[a-zA-Z0-9]*)?$"^^ . . . . . "171"^^ . . . . "https://bioregistry.io/pubmed:"^^ . . . . "Nematode & Neglected Genomics" . . . . "SNOMED CT (International Edition)" . . . "gene" . . . . "http://sweetontology.net/reprDataServiceReduction/$1"^^ . "http://sweetontology.net/realmGeolOrogen/$1"^^ . . "Darwin Core pathway controlled vocabulary" . . . "Sabrina Toro" . . . . "false"^^ . . "^\\d{7}$"^^ . "Planarian Phenotype Ontology" . "15753"^^ . . "subject" . "histological assay" . . "false"^^ . "false"^^ . "phenomena" . . "phenotype" . . "The pattern for expanded URIs in the given resource" . "biology" . . . . . . "false"^^ . . "Pierre Grenon" . . . . . "^\\d{7}$"^^ . "PharmacoDB Cells" . . . "^\\d+$"^^ . . . "protein" . "ess" . "http://sweetontology.net/matrMineral/"^^ . . "open educational resources" . "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons."^^ . . "false"^^ . . . . . . . "vido" . . . "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1"^^ . . . . . . . . . "biozy@ict.ac.cn" . "botany" . . . . . "^\\d+$"^^ . . . . . . . . "Platynereis stage ontology" . . . . . "14"^^ . "metadata" . . . "BioMagResBank" . . "life science" . . . "SWEET Ontology Phenomena Atmosphere" . . . . "sophatmot" . "An identifier for an organization"^^ . "ICDO" . "Holistic Ontology for semiconductor manufacturing and development, products and systems containing semiconductors and connected supply chains."^^ . "https://resolver.api.identifiers.org/resolveMirId/"^^ . "false"^^ . . . . . "https://pypi.org/project/$1"^^ . . "Yu Zong Chen" . . "false"^^ . "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/"^^ . "Korean Cell Line Bank" . . . . . . . . . . "KEGG Environ" . . . "metascience" . . "https://plants.ensembl.org/id/$1"^^ . . . "^\\d+$"^^ . "http://bitterdb.agri.huji.ac.il/Receptor.php?id="^^ . "Collections of images, based on topics, such as the human skull collection"^^ . "Pharmacogene Variation Consortium" . . . . "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1"^^ . "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1"^^ . . . . "183"^^ . . "Registry of Research Data Repositories" . "https://chemprosquare.idrblab.net/data/competitor/details/"^^ . . . "ontology" . "fishbase" . . . "small molecule" . . . "comparative genomics" . "biology" . . "^\\d{7}$"^^ . . . . . "JCGG-STR008690"^^ . . . "https://biomarkerkb.org/biomarker/"^^ . "DRSC05221"^^ . "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1"^^ . . . "open educational resource" . "UniRef" . . . "easychair.topic" . "Ruben Abagyan" . . . "structure" . . "MULT_4_VAR1_bovine"^^ . . "http://www.wikidata.org/entity/$1" . . . . "Gramene Growth Stage Ontology" . . . . "pencehe@oneonta.edu" . . . "realm" . . "^JCRB\\d+$"^^ . "Jacobo Miranda" . . "sweet.stb" . "scientist" . . . . . . . . . . . "wikipathways" . "ontology" . . "https://creativecommons.org/ns#$1"^^ . . . . "0000001"^^ . . . . . . . "0004"^^ . . . . . "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$"^^ . . "rna" . . . . . . . "disease" . . . . . . "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."^^ . . . . . . . . "Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard."^^ . "ontology" . . "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names."^^ . . "fair data spaces" . "http://w3id.org/ioc#$1"^^ . . "false"^^ . . . "earth reference" . . "International Protein Index" . . . "issn" . "food" . "https://mips.helmholtz-muenchen.de/corum/?complex_id="^^ . . "^\\d+$"^^ . . "https://glottolog.org/resource/languoid/id/$1"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Dynamics"^^ . . . "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id="^^ . "protein" . . . . "Triangle"^^ . . . . . "^\\d+$"^^ . . "KCT0008394"^^ . "http://purl.obolibrary.org/obo/RBO_$1"^^ . "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid="^^ . "ST000900"^^ . . "http://sweetontology.net/matrAnimal/$1"^^ . "genome" . . "true"^^ . "NFDI4Biodiversity Collection" . "false"^^ . . "CIViC Disease" . "Lifestyle Factors Ontology" . "development" . . . "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1"^^ . "iso.3166" . . . "T3D0001"^^ . . . . . "genetics" . "obo" . "enrique.blanco@crg.eu" . "http://www.ontologyrepository.com/CommonCoreOntologies/$1"^^ . . . . . . . "batchelorc@rsc.org" . "false"^^ . "Bio-Pesticides DataBase" . . . . "http://www.gramene.org/db/ontology/search?id=GRO:$1"^^ . . . "https://molmedb.upol.cz/mol/$1"^^ . "ontology" . . . . . . "1354581"^^ . . . . . "false"^^ . "^\\d+$"^^ . . "obo" . . "^\\w+\\_\\w+$"^^ . "Signaling Network Open Resource" . . . _:N780330609fe6436483e6d655eea02c72 "J.Bard@ed.ac.uk" . . . "https://hub.docker.com/r/$1"^^ . . "https://sciflection.com/$1"^^ . "obo" . "229"^^ . . . . . . "false"^^ . "earth science" . "mop" . . "false"^^ . "000000012281955X"^^ . "deims.taxonomy" . "Abyss"^^ . "false"^^ . . . "https://vocabularies.cessda.eu/vocabulary/LanguageProficiency?lang=en#code_$1"^^ . "false"^^ . . . . . . . "cellxgene.collection" . "molecular biology" . . . . "Jiang-hua Liu" . "http://viaf.org/viaf/$1"^^ . "ontology" . . . "https://www.ebi.ac.uk/interpro/genomeproperties/#"^^ . "https://cropontology.org/rdf/CO_327:"^^ . "ontology" . . . "https://www.cbioportal.org/study/summary?id="^^ . . "true"^^ . "nfdi4ing" . . . . "Ecological Trait-data Standard" . "Endeavor"^^ . . . "BacMap Biography" . . . . "^\\d+$"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean"^^ . . "anatomy" . . "http://purl.obolibrary.org/obo/LEPAO_$1"^^ . . . "Harshad Hegde" . . . "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . . . . "ukprn" . . . . . . . "true"^^ . "SWEET Ontology Relationships Time" . "geography" . . . "SolidState"^^ . "false"^^ . . . "Toxic Process Ontology" . . . "false"^^ . . . . . "xkos" . . . . . . . "Loggerhead nesting" . . . . "8000221"^^ . . . . . . "http://sweetontology.net/realmGeolOrogen/"^^ . "true"^^ . . "European Bank for induced pluripotent Stem Cells" . . . . . . "^DDB\\d+$"^^ . "false"^^ . . "http://sweetontology.net/reprSciUnits/$1"^^ . . "human genetics" . "publisher" . "http://www.w3.org/ns/odrl/2/$1"^^ . . . . "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . "world2dpage" . . "hso" . . . "0000001"^^ . . . "http://nfdi4earth.de/ontology/"^^ . . . . "bioinformatics" . . . "Yeast Intron Database v3" . . . "https://bioregistry.io/beiresources:"^^ . . "^\\d{4}$"^^ . . "The Science Data Discovery Ontology (sddo) is being developed to provide a semantic foundation for the discovery of information managed by NASA's Science Mission Directorate. This information spans many scientific disciplines, fields and subfields, including heliophysics, earth science, planetary science, astrophysics, biology, astrobiology, and physical science. [from repository]"^^ . "chemistry" . . . . . "sweet.stss" . . . . . "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name="^^ . "senso" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Star"^^ . . "https://suprabank.org/additives/$1"^^ . "raymond@caltech.edu" . . . . "bhalla@ncbs.res.in" . "WB_REF" . . "false"^^ . . . "http://purl.org/dcx/lrmi-vocabs/alignmentType/"^^ . . . "false"^^ . . "biology" . "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria."^^ . _:Nc9f8e1f4bfe449b58d4d28f0afd38c05 "Matt Berriman" . "ecoliwiki" . . "realmGeol/GeologicFeature"^^ . "C2584994"^^ . . "jmesirov@ucsd.edu" . . . "life science" . . "^\\d{6}$"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Charge"^^ . . . "0000632"^^ . . . . . . . . . . "http://purl.obolibrary.org/obo/PR_"^^ . "experimental condition" . . . "https://coicatalogue.uc.pt/index.php?t=specimen&COINumber="^^ . "pmp" . "https://www.uniprot.org/uniprotkb/$1"^^ . . . "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . "https://onto.tib.eu/destf/cs/"^^ . . "74.186"^^ . "taxonomic classification" . . "erik.vannimwegen@unibas.ch" . . "Database of Complete Genome Homologous Genes Families" . . . "pathway" . . "http://purl.obolibrary.org/obo/BCO_"^^ . "125768"^^ . . "The International Standard Book Number (ISBN) is for identifying printed books."^^ . . . . . "false"^^ . . "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID="^^ . . . "https://www.proteomicsdb.org/#human/proteinDetails/$1"^^ . . . "false"^^ . . "mtbd" . . . "biomedical science" . . "iuphar.family" . . . . "uberon" . "reecehart@gmail.com" . . "^\\d+$"^^ . "SNOMEDCT_US_2022_09_01" . . "neuroscience" . . "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1"^^ . "http://vbrc.org/gene_detail.asp?gene_id=$1"^^ . "Allan Peter Davis" . . "dron" . . "biomedical" . "nfdi4ing" . "https://ngdc.cncb.ac.cn/lncbook/gene?geneid="^^ . "life science" . . . . "http://sweetontology.net/stateRoleImpact/$1"^^ . "false"^^ . "panet" . "nfdi4chem" . "http://rdfs.org/sioc/actions#$1"^^ . "sd" . "b.gyori@northeastern.edu" . . . . . . . . . . "mirex" . "Hazardous Substances Data Bank" . . . . . . . "false"^^ . . . "false"^^ . "life sciences, biology" . . . . "liz.allen@f1000.com" . "fortuna@ebd.csic.es" . "semion" . "Experimental condition ontology" . . . . "Discovery tool for biomedical research resources available at institutions throughout the U.S."^^ . . "fossilworks.taxon" . . "Basic Register of Thesauri, Ontologies & Classifications" . "http://sweetontology.net/relaProvenance/"^^ . . "Certificate"^^ . . . "biomedical science" . . "100101"^^ . . . . . . . . . . . . . "Yeast Searching for Transcriptional Regulators and Consensus Tracking" . "social science" . . "https://w3id.org/aio/"^^ . . "David Wishart" . . . "toxoplasma" . "https://i.uestc.edu.cn/AACDB/details.php?id="^^ . . . . . "1"^^ . . "Southwestern Environmental Information Network" . . . . . "false"^^ . . "rhyam@rbge.org.uk" . . . . . . . . . "http://purl.org/dcx/lrmi-vocabs/educationalUse/$1"^^ . "FlyBase Qualifiers" . "1001"^^ . . "http://sweetontology.net/realmClimateZone/$1"^^ . . . "https://saref.etsi.org/saref4agri/$1"^^ . . . . . "https://mamoura.eci.ufmg.br/tematres/vocab/index.php?tema="^^ . . "https://bioregistry.io/medlineplus:"^^ . "false"^^ . . "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/"^^ . . . . "https://neurovault.org/collections/$1"^^ . . "cellosaurus.resource" . "nkos" . "Database of Interacting Proteins" . . "nihhesc" . "genetics" . "Chlamydia"^^ . . "earth sciences" . "dsm-v" . "blast" . . . _:N16e71f5023ec4b9ea8571348ea9b3fad . "MycoBrowser leprae" . "false"^^ . "https://mardi4nfdi.de/mathmoddb#"^^ . . "life sciences, biology" . "oryzabase.strain" . . "ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for compounds that compete with probes for binding to target proteins."^^ . . . "representation mathematics function" . "Building Topology Ontology" . . . . . . "https://data.chembiosys.de/organisms/$1"^^ . . . "Nucleotide" . . . . . . . . . . "molecular entity" . "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information."^^ . . . "ess" . "https://neurovault.org/collections/"^^ . "chemistry" . "ProtClustDB" . . "Describes the entity being analyzed in the study or variable. This vocabulary can also be used to describe the unit of observation, which is the unit being observed, or from which data are collected. The unit of observation can be the same as, or different from the unit of analysis."^^ . "CompoundEquivalence"^^ . . . . . "deims.network" . "pdumdv" . . "Publishing Roles Ontology" . . . "http://sweetontology.net/phenAtmoTransport/"^^ . . . . . . "0000020"^^ . "CharProt" . . . . "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_"^^ . "false"^^ . . . . "UBERON Issue Tracker" . "https://biopragmatics.github.io/debio/"^^ . "GR_PROTEIN" . . . "^VB\\.[A-Za-z][A-Za-z]\\..*$"^^ . "foundational ontologies" . "coconut" . . "https://ordb.biotech.ttu.edu/ORDB/Data/"^^ . "0459895"^^ . . . . "https://merckindex.rsc.org/monographs/"^^ . "0000255"^^ . . . . . . . "false"^^ . . . . . "subject agnostic" . . "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . "3532759"^^ . "https://www.signalingpathways.org/datasets/dataset.jsf?doi="^^ . . . "dna" . . . . "Karel Berka" . . "fbol" . . . "https://www.deciphergenomics.org/syndrome/"^^ . . . . . . _:N63ebbdc231af40b1b5d86e8b5ed3b3e4 . "sabiork.compound" . . "TAIR Gene" . "ess" . . "secondary_attack_rate"^^ . . "false"^^ . . _:N193391de791a4b038e0b980370c2c36d . . "E-cyanobacterium Experimental Data" . . . "chembiosys.organism" . . "false"^^ . "major histocompatibility complex" . . . . . . "representation representation scientific methodology" . . . "reaction" . "https://resolver.api.identifiers.org/resolveMirId/$1"^^ . . "RiceNetDB Compound" . . . . . . . . . . "aquaculture" . . . . "090924"^^ . . . . . "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities."^^ . "OpenCitations Meta Identifier" . . . "mcarthua@mcmaster.ca" . . "structure" . . . "2"^^ . "topdb" . "PharmGKB pathway" . . "^M\\d+$"^^ . "genomics" . . "fairsharing" . . . . "epidemiology" . . "state space" . "^MCDS_S_[a-zA-Z0-9]{1,10}$"^^ . "false"^^ . "^\\d{5}$"^^ . "ferroliganddb" . . . . . . . "ontology" . "taxonomy" . . . . . "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1"^^ . . . "synthetic biology" . . "false"^^ . . . . . . "pictar" . . "gfbio.ets" . "false"^^ . . . . . . . "https://osf.io/"^^ . . . . . . . . . . . . "cst" . "vjenkins@morgan.harvard.edu" . "soreabb" . . . "http://w3id.org/openeduhub/vocabs/educationalContext/$1"^^ . . . . . . . "plos" . . . "state spectral band" . "http://sweetontology.net/matrEquipment/$1"^^ . "false"^^ . . . "SWEET Ontology Representation Science Provenance" . . "interaction" . "ddi.typeoffrequency" . "https://abrc.osu.edu/stocks/number/SALK_$1"^^ . . . . "caloha" . "regulation of gene expression" . "Cell Signaling Technology Pathways" . . "http://purl.org/biotop/biotop.owl#"^^ . "earth sciences" . . . "1829126"^^ . "neutron science" . . . "plant breeding" . "http://flowrepository.org/id/"^^ . . "RiceNetDB Reaction" . "United States Patent and Trademark Office" . . . . . "The EMI ontology is used to structure spectrum annotation provenance by reusing the PROV-O ontology (a W3C recommendation) and sample and observation data by applying the SOSA ontology. EMI reuses the SOSA ontology as a data schema for struturing the Sample and Observation data. SOSA (Sensor, Observation, Sample, and Actuator) is a subset of SSN (Semantic Sensor Network Ontology) that is a W3C recommendation. [from homepage]"^^ . . . . "eugenes" . . . "https://portal.issn.org/resource/ISSN/$1"^^ . . "genetics" . . . . . . . "nfdi4ing" . . "http://sweetontology.net/realmClimateZone/"^^ . . "^\\d+$"^^ . "0000000"^^ . "structure" . _:Nfda90a1d2aff4523add49febd05f27c6 . "^Q[A-Z0-9]+$"^^ . . . . . "plant cell biology" . . . . "https://purl.brain-bican.org/ontology/hbao/HBA_$1"^^ . . . . "Application"^^ . "0000006"^^ . "nemo" . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/DataSourceType?lang=en#code_"^^ . . "wsellers@broadinstitute.org" . "identifier of scientific author in www.cienciavitae.pt"^^ . . . . . "^IPR\\d{6}$"^^ . . . "http://purl.obolibrary.org/obo/BTO_"^^ . "ResearchGate profile ID" . "pubchem_id" . "false"^^ . "false"^^ . "false"^^ . . "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name="^^ . . "gaz" . _:N2e48d757240144b491a4b57f10774466 "NLM Customer Service" . "cellular component" . . "https://bioregistry.io/bpdb:"^^ . . "bgee.gene" . . . "obo" . "ontology" . . . . . . . . . . . "pathogen" . . . "gene" . "https://gudmap.org/id/"^^ . . "https://biosimulators.org/simulators/"^^ . . . "reproduction" . . . . "false"^^ . . . . "life science" . . "Joint FAO/WHO Expert Committee on Food Additives" . . "Veterans Health Administration (VHA) unique identifier" . . "ypo" . . "Tanja Bekhuis" . . "repository" . . . "dna" . . "plant phenotypes and traits" . . "false"^^ . . . "3hB06"^^ . "NCBI_Taxon_ID" . "^PA\\d+$"^^ . "false"^^ . . . . . "type"^^ . . "mgriffit@wustl.edu" . . . "https://osdr.nasa.gov/bio/repo/data/biospecimens/$1"^^ . . "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l="^^ . . . . . . . . . . . "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#$1"^^ . . "Erik van Nimwegen" . "bindingdb" . "Célia Michotey" . "^PT\\d+$"^^ . . "Pearl millet ontology" . . "MEDIGUE Claudine" . "https://www.arraymap.org/pgx:$1"^^ . "proteomics" . . . "medical informatics" . "toxicology" . _:N36ff3cee77cc45a5b7fce47b5e656e62 "po-discuss@plantontology.org" . . . "https://bdsc.indiana.edu/stocks/"^^ . . . . . "molecule" . . . "vsmo" . "bcbc" . . . "RNA SSTRAND" . "^PWY\\w{2}\\-\\d{3}$"^^ . . . . . . . "ncrna" . . . . "ISO Object Identifier" . . . "Lentil ontology" . "drugbank.salt" . "biomedical science" . "botany" . . . "drug" . "false"^^ . "ActiviateOrArchiveContract"^^ . "genetic engineering" . "The ROSETTA ontology of industrial robotics devices and robotic skills." . "MT"^^ . "cellxgene.dataset" . "High-quality Automated and Manual Annotation of microbial Proteomes" . "The FIESTA-IoT ontology takes inspiration from the well-known Noy et al. methodology for reusing and interconnecting existing ontologies. To build the ontology, we leverage a number of core concepts from various mainstream ontologies and taxonomies, such as Semantic Sensor Network (SSN), M3-lite (a lite version of M3 ontology), WGS84, IoT-lite, Time, and DUL ontology."^^ . . . . "Sabrina@tislab.org" . . . . . . "obo" . "^\\d+$"^^ . . "bco" . . . "http://sweetontology.net/stateRoleGeographic/"^^ . "zdoucmm@gmail.com" . . "http://www.genome.jp/dbget-bin/www_bget?aaindex:"^^ . . "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" . "molecular neuroanatomy resource" . . . . . . . . "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1"^^ . . . . . . "protein interactions" . "CCR_C-3784_55fa12c9-35ad-7b55-b7a5-f9926c801952"^^ . "ribocenter" . . "http://purl.obolibrary.org/obo/MOD_$1"^^ . "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally."^^ . . . "ChangeEvent"^^ . . . "^\\d+$"^^ . "https://gdo.endlessforms.info/view/classes?uuid=GDO_$1"^^ . . "obo" . . "Jeffrey Grethe" . . "false"^^ . "^[a-zA-Z0-9\\-:#\\.]+$"^^ . "dragondb.allele" . "https://nztcs.org.nz/nztcs-species/$1"^^ . . . . "Reactome" . . . . . . . . . "EGAD00000000001"^^ . . "obo" . . "^\\d{7,8}$"^^ . . . . . . "false"^^ . "F001"^^ . . . . "VMH metabolite" . . . . "^FB\\w{2}\\d{7}$"^^ . . "Lonza" . . "https://n2t.net/$1:$2" . . . . . . "PicTar" . . "ep@epoz.org" . "http://tolweb.org/$1"^^ . "http://purl.obolibrary.org/obo/STATO_"^^ . . . . "^\\d+$"^^ . . . . . . "ontology" . "NeuroVault Image" . . "Anita Caron" . "^LBCTR\\d+$"^^ . "drug" . . "false"^^ . . . . "^\\w+$"^^ . "obo_rel" . "Human Ancestry Ontology" . "hgnc.symbol" . . "http://purl.obolibrary.org/obo/INO_"^^ . "mjyoder@illinois.edu" . . . . "https://geneontology.org/GO_REF/$1"^^ . . "4DNSR73BT2A2"^^ . "https://www.webofscience.com/wos/woscc/full-record/WOS:"^^ . . . . "Yossih@tauex.tau.ac.il" . "Todd M Lowe" . . . . . . "subject agnostic" . . . "http://data.europa.eu/89h/"^^ . . . . . . "An ontology for dengue fever."^^ . . "false"^^ . . "http://www.w3.org/2006/vcard/ns#$1"^^ . "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$"^^ . . . "nfdi4ing" . . . . . "https://cropontology.org/rdf/CO_357:$1"^^ . . . "ontology" . . . . "http://aps.unmc.edu/AP/database/query_output.php?ID="^^ . . "Extensible Markup Language" . . . "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration."^^ . . . . . "CL0192"^^ . "000140" . . "http://sweetontology.net/phenGeolFault/$1"^^ . . . "nist" . "65"^^ . "omia" . . . . "00000001"^^ . . . . . "true"^^ . "https://crates.io/crates/"^^ . "dna" . . . "62"^^ . . "has canonical" . . . . . . . "Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research."^^ . "Lebanon Clinical Trials Registry" . "https://www.ncbi.nlm.nih.gov/dbvar/studies/"^^ . "somaeq" . . "^\\d{5}$"^^ . . "life sciences, biology" . . . . "Amos.Bairoch@sib.swiss" . . "sweet.propcat" . . . . "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2."^^ . . . . . . . "dwudwary@lbl.gov" . . . . . . "3D Metabolites" . . . . . . . . . . "0000030"^^ . "https://www.worldcat.org/isbn/"^^ . . "https://www.datascienceontology.org/concept/$1"^^ . "nlx.sub" . "http://purl.obolibrary.org/obo/GSSO_"^^ . "fair data spaces" . . . . . "api" . . . . . "http://elite.polito.it/ontologies/dogont.owl#"^^ . . "bioinformatics" . "595"^^ . . . . . . "TogoID" . . . . "false"^^ . . "NAD%20biosynthesis"^^ . . "https://scicrunch.org/resolver/RRID:AGSC_"^^ . "ohpi" . . . . "This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins."^^ . "https://w3id.org/polymat/$1"^^ . . "false"^^ . . "compound" . "strain" . "https://purl.dataone.org/odo/SASAP_$1"^^ . "cas_id" . "panorama" . . "mauno.vihinen@med.lu.se" . . "obo" . "https://www.metabolome-express.org/datasetview.php?datasetid="^^ . . "tdwg.format" . "life science" . "relations" . . . . "Marie-Paule Lefranc" . "belongsToCluster"^^ . "4DN" . . . "GeneAnnot: Microarray Gene Annotation" . . . . "^YMDB\\d+$"^^ . "0000460"^^ . . . . . . . "WikiPathways Ontology" . . "https://gxy.io/GTN:$1"^^ . . . "LTS0004651"^^ . . . . . "^[SCTAGMNU]\\d+$"^^ . . . . . "false"^^ . "http://www.loc.gov/premis/rdf/v3/"^^ . . "chemistry" . "http://sweetontology.net/phenAtmoFront/"^^ . "^[a-zA-Z0-9_-]{3,}$"^^ . "100010"^^ . . "Occupation"^^ . . . "5112"^^ . "https://radlex.org/RID/$1"^^ . . "^LDTP\\d+$"^^ . "Terms used to classify groups of sensors, instruments, sources of algorithmically computed data (numerical models) or samplers (collectors of water, SPM, sediment, rock, air or biota samples)."^^ . "^\\d+$"^^ . . "http://purl.obolibrary.org/obo/GAZ_"^^ . . . . . . "protein" . "obo" . . "false"^^ . "false"^^ . . . . . . . "^([hm]\\_)?\\w+Pathway$"^^ . . . "https://w3id.org/bot#"^^ . "false"^^ . "ontology" . . . "developmental biology" . "false"^^ . "91"^^ . . "chemistry" . _:Nffc81e39c3e24280aa0109de0832ce79 "kate.rose@noaa.gov" . . . "gramene.taxonomy" . . . . . "ceph" . "false"^^ . . . . "false"^^ . . "false"^^ . "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."^^ . . . . . "iot" . "http://purl.obolibrary.org/obo/XLMOD_$1"^^ . "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1"^^ . "subject agnostic" . "hgnc.family" . "VIVO Ontology" . . "joshua.adam.klein@gmail.com" . . . . . . . . "PXD002255:ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"^^ . "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1"^^ . "preclinical studies" . . "https://osdr.nasa.gov/bio/repo/data/biospecimens/"^^ . . . . "Mingxun Wang" . "engineering" . "lcsh.genreforms" . "The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)"^^ . . . "wb.rnai" . . "d.a59037e8"^^ . "A public repository, standards compliant, for proteomics image data published in the literature. This repository currently contains data from 16 published articles, putting together 22 reference maps for 15 species, totalizing nearly 4'400 identified spots."^^ . "Minimal set of terms for anatomy"^^ . _:Nb937b7cdfd0741a38f7e36aa0edcdcc5 "NLM Customer Service" . "^\\w+$"^^ . . . . "^[Mm]{2}[0-9]{5,}(\\.[0-9]+)?$"^^ . "RepeatsDB Structure" . . "A typology of methods used to translate data collection instruments, including questionnaires, individual questions, measurements, data capture flows, etc."^^ . . . "false"^^ . "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation."^^ . . . . . . "false"^^ . "https://www.biorxiv.org/content/10.1101/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Water"^^ . . "imsr.apb" . . "^ANF\\d{5}$"^^ . . . "clustering" . . . "clinicaltrials" . "https://www.uniprot.org/locations/"^^ . . . . "false"^^ . . . . "https://www.rsc.org/Merck-Index/reaction/"^^ . "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id="^^ . . . . "richard.scheuermann@nih.gov" . "FAIRsharing Organization" . "https://www.worldwildlife.org/ecoregions/$1"^^ . "oclc" . . . . . "pwo" . . . "^\\d+$"^^ . . . . . "MobiVoc is an open vocabulary for future-oriented mobility solutions."^^ . . . "190000021540"^^ . . "Vocabulary of Materials Tribology Lab at KIT" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Lightning"^^ . . "http://agroportal.lirmm.fr/ontologies/$1" . . "NA06985"^^ . . . "http://purl.obolibrary.org/obo/REX_$1"^^ . "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO="^^ . "Vincent Robert" . . . "false"^^ . . . . "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1"^^ . . "ftt" . _:Ndd1278daca154152afd75b3c30db2337 "takatter@dbcls.rois.ac.jp" . . "50-00-0"^^ . . "proco" . . . "life science" . . . "crates" . . . . "life sciences, biology" . "https://www.phenxtoolkit.org/protocols/view/"^^ . "^ACTRN\\d+$"^^ . . . . . . . "false"^^ . . "https://hpscreg.eu/cell-line/"^^ . "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis."^^ . . . . . . . . . . . "ala"^^ . . "23159291"^^ . . . . . "atmosphere sky" . . "omics" . "2.16.840.1.113883.6.88" . . "fcb" . "An ontology for the description of information objects."^^ . . . "^\\d{3}-\\d{3}-\\d$"^^ . "http://ecmdb.ca/compounds/$1"^^ . . "https://rpcec.sld.cu/en/trials/"^^ . "lipidomics" . . "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1"^^ . "https://lincs.hms.harvard.edu/db/antibodies/$1"^^ . . . . . . "bioregistry.collection" . "microbial" . "David Osumi-Sutherland" . "http://sweetontology.net/matrElement/$1"^^ . . "https://fungi.ensembl.org/id/"^^ . . . "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:"^^ . . . . . . "signaling" . . . . "NCI Data Commons Framework Services" . "protein" . . . . . . . . . "swrl" . . "earthcube.srt" . . . . "EY223054.1"^^ . . . . . . . . "genome" . "Datasets in DEIMS SDR"^^ . . "Mosquito gross anatomy ontology" . . . "Darwin Core Terms" . "mutation" . "^\\d+\\-\\d+\\-\\d+$"^^ . . . . . "false"^^ . . . . . . . "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . "https://bitbucket.org/"^^ . . . . . "structural biology" . . . . . . "Reaxys eMolecules" . . . . "Structural Database of Allergenic Proteins" . . "intact" . . . "Dutch Research Council File Number" . . . . . "semantic web" . "ontology" . . "nfdi4chem" . "phenotypes" . . . . "maizegdb.locus" . . . "false"^^ . "bhsung@kribb.re.kr" . "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue."^^ . . "http://addictovocab.org/ADDICTO_"^^ . "nfdi4cat" . . "somanr" . "quality" . . . . "Protein Structural Change Database" . "estdab" . . . "pgx" . "cdno" . . "hp" . "lei" . "paolo.romano@hsanmartino.it" . . "https://www.probes-drugs.org/compound/"^^ . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . "JRBC Cell Bank" . "Phylogenomic Analysis of Human Genome" . . . . "MicroScope" . "unique identifiers" . "56305849200"^^ . . . "sweet.propche" . . . "history" . "Japan Chemical Substance Dictionary" . "false"^^ . . "cell" . "transcriptomics" . . "drug repositioning" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Coastal"^^ . "false"^^ . . "ion" . . . . . _:N6345fc15ae8a4c6d938e932ab150f2eb "Michelle Futornick" . . "MESHA" . . . . . "http://www.icd9data.com/getICD9Code.ashx?icd9="^^ . . . . . . . . "biomedical science" . . . . "false"^^ . . "Fahim Imam" . . "^[0-9]+$"^^ . . "neurobiology" . "http://purl.obolibrary.org/obo/COB_$1"^^ . . . . "phosphosite.sitegroup" . . "214100"^^ . . . "has alternative prefix" . . "https://mediadive.dsmz.de/ingredients/$1"^^ . . "metabolite" . . . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information."^^ . . . "sciflection" . . . "GND-Ontologie" . "ENVO" . . "Acute"^^ . . . "preclinical studies" . "SWEET Ontology Material Isotope" . "Human Metabolome Database" . . . . . "vs" . "http://www.kegg.jp/entry/"^^ . . . "Metabolites in the Xenobiotics Metabolism Database."^^ . "http://ctdbase.org/detail.go?type=gene&acc="^^ . . . "earth sciences" . . "182"^^ . "Dataset"^^ . . . "small molecule" . "The Data Privacy Vocabulary provides an ontology (classes and properties) and taxonomies of concepts to represent information regarding how personal data is processed in the form of an ontology or a knowledge graph."^^ . . . "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research."^^ . . "https://sorgerlab.github.io/famplex/"^^ . . "Ambrose Carr" . . "Janna Hastings" . . "rdf" . "sweet.relt" . "earth sciences" . . "https://lincs.hms.harvard.edu/db/cells/"^^ . "NLXSUB" . . . "false"^^ . . . . . "false"^^ . . "miRBase mature miRNA" . . . . . . "^[\\w-]+$"^^ . . . "Plant Experimental Conditions Ontology" . . "Resource Description Framework" . . . . . "EC number" . "Sunflower ontology" . . . "PSSKB allows researchers to model post translational modifications and amino acid substitutions in proteins, providing 3D structural representations. Identifiers represent protein motifs on which PSSKB provides data."^^ . . . "diagnosis" . "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1"^^ . . "NeuroNames" . "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets."^^ . . . "0290"^^ . . . . "Signaling Pathways Project" . "http://purl.obolibrary.org/obo/ONS_$1"^^ . . . . . "https://w3id.org/hpont#$1"^^ . . . "r3d100014165" . . . . . . "false"^^ . "ontology" . . . . "NFDI4BIOIMAGE Collection" . . "osf232097"^^ . . . "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term="^^ . . . "phenotype" . . . . . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012."^^ . . "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"^^ . "Q9P0K8"^^ . "^\\d+$"^^ . "psychology" . "hasDefectComplex"^^ . . "helpdesk@cropontology-curationtool.org" . "false"^^ . "Agilent Probe" . . . "gene" . "Tree of Life Web Project" . "https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/$1.html"^^ . . "civil engineering" . . "ontology" . . . . "15000"^^ . "PR00001"^^ . . . "obo" . . . . "0e39569d-ff81-4b78-9c34-b07309504d80"^^ . . . . . . . . . . "http://sweetontology.net/realmOceanFeature/$1"^^ . . "HL7 V2 Code System" . "life science" . "3DMET is a database collecting three-dimensional structures of natural metabolites."^^ . "engineering" . . . . . "https://bacdive.dsmz.de/strain/"^^ . "false"^^ . . "ChEMBL" . . "Homosaurus" . . . "researcher" . "environmental science" . . . "https://phytochem.nal.usda.gov/phytochem/chemicals/show/"^^ . . . "ddi" . "YRC PDR" . . "19757"^^ . "fabrice.legeai@rennes.inra.fr" . . . "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1"^^ . "ontology" . "coi" . "civic.evidence" . . . . . . . "subject agnostic" . . "false"^^ . . "Amanda Hicks" . "Margaret R. Woodhouse" . . . . . . "sophel" . "Manually curated collections of resources stored in the bioregistry"^^ . . . "protein-protein interactions" . "NFDI4Energy Resources" . "agriculture" . "509015"^^ . "The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both: - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e. - Use case 1 ?elderly at home monitoring and support?, - Use case 2 ?monitoring and support of healthy lifestyles for citizens?, - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification. SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology. ![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg) For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). For embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e. - Use case 1 “elderly at home monitoring and support”, - Use case 2 “monitoring and support of healthy lifestyles for citizens”, - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509"^^ . . "natural science" . "Ontology representation of the Climate and Forecast (CF) standard names parameter vocabulary, which is intended for use with climate and forecast data in the atmosphere, surface and ocean domains. Every CF parameter is captured as a SKOS concept.This vocabulary is a simplified version of the CF vocabulary P07 from the NERC Vocabulary Server (NVS), National Oceanography Centre - British Oceanographic Data Centre (BODC), https://vocab.nerc.ac.uk."^^ . "https://doi.org/10.29172/$1"^^ . . "ontology" . . "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1"^^ . . . "UPI000000000A"^^ . . "protein" . "metabolomics" . "true"^^ . . . . "foodb.compound" . . . "unit" . "miw023@ucsd.edu" . . . . . "metabolites" . . . "false"^^ . "ontology" . . . . . "biochemistry" . "false"^^ . . "false"^^ . "The Bioinorganic Motif Database" . . "https://uniresolver.io/#did:$1"^^ . . . . "http://sweetontology.net/propFraction/"^^ . . "Attrition"^^ . . . . "P-008-GD6"^^ . . "SPIKE Map" . . "biology" . . . "dbvar.studies" . . "orthologous" . . "marine biology" . "^\\d{7}$"^^ . . "interaction" . . . . "https://mycobrowser.epfl.ch/genes/"^^ . . "Sebastian Lobentanzer" . "^\\d+$"^^ . "^ENST\\d{11}$"^^ . . "phenomics" . . . "datanator.reaction" . "false"^^ . . . "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id="^^ . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs."^^ . . . . . . . . . . "^\\d+$"^^ . . . "http://lexvo.org/ontology#"^^ . "IntellectualContribution"^^ . "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . . . "life cycle stage" . "gene mapping" . "kpio" . "false"^^ . . . . . "life science" . . . . "polysaccharides" . "dbg2introns" . "Aisling Doyle" . "Universal Natural Products Database" . . "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions."^^ . . "protein" . "false"^^ . . . "DeBiO" . . "life science" . . . "gmd.ref" . "Proteomics Identification Database Ontology" . . "https://bioregistry.io/dbd:"^^ . . . . _:N6283dd5facfc48aabd8356473b677ece . . . "false"^^ . "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records."^^ . "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line="^^ . . . . . . "false"^^ . "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials."^^ . "AB0"^^ . . . "^\\d+$"^^ . "false"^^ . . "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones."^^ . "clustering" . . . "ontology" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Aerosol"^^ . . . . . . "metabolomics" . "KEGG pathway" . . . "false"^^ . "SWEET Ontology Property Categorical" . "BernoulliTheorem"^^ . "Type of Note" . . . . . "100000"^^ . _:N297f46f898cd4491b122d134776702f1 . . . . . "http://reg.clinicalgenome.org/allele?hgvs="^^ . . . "^spike\\d{5}$"^^ . "http://purl.obolibrary.org/obo/YPO_$1"^^ . "http://purl.obolibrary.org/obo/NOMEN_"^^ . . "ChemBank is a public, web-based informatics environment created by the Broad Institute's Chemical Biology Program and funded in large part by the National Cancer Institute's Initiative for Chemical Genetics (ICG)."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic"^^ . . . "genome" . . . "nfdi4ing" . . "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank."^^ . "https://rpcec.sld.cu/en/trials/$1"^^ . . . . . "Accession"^^ . . . "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1"^^ . "https://biopragmatics.github.io/providers/scomp/$1"^^ . "Andreas Ledl" . "^\\w+$"^^ . . "bio.tools" . . . "data management" . "landreshdz@gmail.com" . "Dynamic Ecological Information Management System - Site and Dataset Registry - Network" . "fovt" . "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes."^^ . . . "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"^^ . . . . . "http://cgsc.biology.yale.edu/Site.php?ID="^^ . "4DN" . . . . "Identifiers for chemicals used as buffers"^^ . . "ontology" . . "gene" . . "Stephen Fisher" . . . "Orphanet Rare Disease Ontology" . . . "CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains. Note that while still available and included in Unified Medical Language System (UMLS), it has not been updated since 2006."^^ . "Mouse Genome Informatics" . "phenotype" . "nucleotide" . "AdverseOutcomePathway"^^ . "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id="^^ . . . . . "obo" . . "life science" . . "false"^^ . . . "http://www.scopus.com/record/display.url?origin=inward&eid=$1"^^ . . "http://fossilworks.org/?a=referenceInfo&reference_no="^^ . "biochemistry" . . . . . "iRefWeb" . "epidemiology" . . "dicom" . . . "gene family" . . . "HMS Library of Integrated Network-based Cellular Signatures Datasets" . . . . "itis" . . . "https://www.npmjs.com/package/"^^ . . . "Protein Model Database" . . . "SWEET Ontology Human Environmental Conservation" . "Simple Standard for Sharing Ontological Mappings" . "arrayexpress.platform" . "https://query.biodeep.cn/metabolite/"^^ . "exac.transcript" . . . . "host" . "life science" . "SWEET Ontology Representation Scientific Function" . "life science" . "36010371"^^ . . . "egon.willighagen@gmail.com" . "marc.hanauer@inserm.fr" . "Database of Sequence Tagged Sites" . . "David Brodbelt" . . . "^\\w{4}\\d{8}$"^^ . . . . "A type for entries in the Bioregistry's collections" . "The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation."^^ . . . "christoph.wohner@umweltbundesamt.at" . "false"^^ . . "fairmat" . . . . "mirbase.family" . "metatlas.reaction" . "CompositeProcess"^^ . "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1"^^ . "Q81661651" . "The WikiPatwhays Graphical Pathway Markup Language (GPML) vocabulary."^^ . . "https://www.flymine.org/come/entry?gn="^^ . "https://www.storedb.org/store_v3/download.jsp?fileId="^^ . . "https://biopragmatics.github.io/providers/uniprot.ptm/"^^ . "iNaturalist User" . "oonagh.mannix@helmholtz-berlin.de" . . . . . "sdis" . . . "44259"^^ . . . . . . . . "http://standards.iso.org/iso/15926/part14/$1"^^ . . . "expression data" . . "https://publons.com/researcher/"^^ . . "true"^^ . . "dgrc" . "human" . . . . "false"^^ . "http://www.ribocirc.com/rna_detail.php?circ_id=$1"^^ . "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information."^^ . "ArchDB" . . . . . "public finance" . . . . "Aquatic Sciences and Fisheries Information System" . "false"^^ . . . . "CGNC" . "nfdi4ing" . "demographics" . . . "ahamosh@jhmi.edu" . . "http://purl.obolibrary.org/obo/HANCESTRO_$1"^^ . . "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id="^^ . . "http://purl.obolibrary.org/obo/ZEA_$1"^^ . . . . "true"^^ . . . . . . "UPa" . . "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ="^^ . "false"^^ . "https://web.expasy.org/cellosaurus/" . "genomic" . . . "false"^^ . . . . . . . "GlycoPOST" . . . "ddpheno" . . "BioPortal" . . "government" . . . . "true"^^ . . . "^CHEMBL\\d+$"^^ . . . "http://sweetontology.net/reprDataFormat/"^^ . "dna" . . . . "genomics" . "http://tolweb.org/"^^ . "https://units-of-measurement.org/"^^ . "^\\d+$"^^ . . . "A collaborative project intended to create an encyclopedia documenting all living species known to science"^^ . "PhosphoSite Residue" . "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes."^^ . . . . . "schemaorg" . "^GCF_[0-9]{9}(\\.[0-9]+)?$"^^ . . "http://purl.obolibrary.org/obo/XPO_$1"^^ . "Richard H. Scheuermann" . . . "LipidBank" . . . . "umls" . "EDAM Ontology" . "http://www.onto-med.de/ontologies/gfo.owl#"^^ . . . "infectious" . "Gramene Taxonomy" . "ldp" . "Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate."^^ . "bioregistry"^^ . . . . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1"^^ . . . "dsw" . . . . . . "A001094"^^ . . . . . . . "ChEMBL" . . "amoebadb" . . . . "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects."^^ . . "CTD Chemical" . . . . . . "http://sweetontology.net/stateTime/$1"^^ . "https://www.tno.nl/agrifood/ontology/common-greenhouse-ontology#"^^ . . . "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data."^^ . "api" . . "computational chemistry" . "Cardiovascular Disease Ontology" . . . "biomedical science" . . . . "^[0-9]{4}$"^^ . . "Data Documentation Initiative Vocabulary" . . "https://cryptodb.org/cryptodb/app/record/gene/$1"^^ . "chemical entity" . . "life science" . . "http://scop.berkeley.edu/sid=$1"^^ . . . . "gene prediction" . . . . . . "post-translational modification" . "ontology" . . . . "http://sweetontology.net/humanKnowledgeDomain/$1"^^ . . . . . "pier.buttigieg@awi.de" . "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . . "Dublin Core Metadata Initiative Abstract Model" . . "anatomy" . . . "iao.issue" . . . "false"^^ . "Air"^^ . . . . . "Trushar Shah" . . "Cell line collections (Providers)"^^ . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Taxonomy" . "https://www.ebi.ac.uk/metagenomics/proteins/$1"^^ . . "Chris Grove" . "Food Interactions with Drugs Evidence Ontology" . . "dbo" . . "68513255-fc44-4041-bc4b-4fd2fae7541d"^^ . . . . "DAPK1"^^ . "educational science" . . . "structure" . . . . . "wikipedia.en" . "Colorectal Cancer Atlas" . "The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format"^^ . "72ff6ff882ec447f12df018e6183de59"^^ . . . . . . "lrmi" . . "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology."^^ . . . "DSSTox_CID" . "https://www.ncbi.nlm.nih.gov/medgen/"^^ . "fid move" . . . . "molecular chemistry" . "https://rubygems.org/gems/$1"^^ . . . . . "saref.environment" . "materials" . "Vertebrate Genome Annotation Database" . "false"^^ . . . "agriculture" . . . . . . "biro" . "^\\d+$"^^ . "http://www.receptors.org/nucleardb/proteins/"^^ . . . "273"^^ . "false"^^ . . . "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets."^^ . "Supply Chain Operation Reference" . . "https://www.linkedin.com/in/$1"^^ . "biomedical science" . "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/"^^ . . . "^\\d{7}$"^^ . "^P\\w+$"^^ . . "A concept scheme that enumerates the educational uses of a learning resource."^^ . _:N176d3d28fa9742b691322af582ab35a1 "steve.baskauf@vanderbilt.edu" . "fid move" . "Layla Michán Aguirre" . . "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."^^ . . "metabolic model" . . "5"^^ . "BRENDA Tissue Ontology" . "ensembl.metazoa" . _:N176d3d28fa9742b691322af582ab35a1 "Steve Baskauf" . . . "https://www.gtexportal.org/home/gene/$1"^^ . . . "http://purl.uniprot.org/isoforms/"^^ . "sopropdr" . . "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code="^^ . "5688061"^^ . "http://uri.neuinfo.org/nif/nifstd/nifext_"^^ . "sweet.reps" . . "^C\\d+$"^^ . "BY-COVID"^^ . . . . "qafeQTWIWmcC"^^ . . "Christine Orengo" . . . "Next Generation Biobanking Ontology" . . "151022"^^ . "esco.model" . . . . "true"^^ . "genetic code" . "http://sweetontology.net/realmCryo/$1"^^ . . . "pharmacogenomics" . "http://sweetontology.net/stateRoleTrust/"^^ . . "false"^^ . . . . . "agriculture" . . "12e8LH"^^ . . . . . "SWEET Ontology Representation Data Service Validation" . . . "4238"^^ . . . "Software Package Data Exchange RDF Vocabulary" . . "false"^^ . . "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors"^^ . . . . "https://lambdamusic.github.io/ontospy-examples/gold-2010owl/class-gold$1.html"^^ . . . "dashr" . . . . . "1443"^^ . . . . "phenotype" . . . . "Specifies the type of numeric data."^^ . . . . "protein" . "sweet.phfi" . . . "https://www.eionet.europa.eu/gemet/en/concept/$1"^^ . . "lspci" . "Sam Griffiths-Jones" . "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature."^^ . . "http://sweetontology.net/realmLandVolcanic/$1"^^ . . "AllSomeInterpretation"^^ . . . . . "101"^^ . . . "SWEET Ontology Realm Climate Zone" . . "cubedb" . "http://purl.org/cerif/frapo/"^^ . . . . "The set of prefixes used in the Cellosaurus resource" . . "life science" . "false"^^ . . . "MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides"^^ . . . . . . "SNOMEDCTCT_2018_03_01" . . . "ontology" . . . "structural biology" . . . "geochemistry" . . . "Silvio Tosatto" . . . "MTBLS1"^^ . . "This ontology integrates cell type markers for cells in the Cell Ontology from various sources along with details of marker context (anatomical context, assay), confidence (where available) and provenance. [from repository]"^^ . . . . . "Tudor Oprea" . . . . . "Aceview Worm" . "Kerafast cell lines" . "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a"^^ . . . . . "https://vcell.org/biomodel-"^^ . . "https://pharmacodb.ca/datasets/$1"^^ . "tol.webproj" . . "mdl" . . "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1"^^ . "computational chemistry" . "http://wheat.pw.usda.gov/report?class=gene;name=$1"^^ . . . "Gm00047"^^ . "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"^^ . "Fernanda Farinelli" . "omics" . . "Dialnet journal ID" . "molecule" . "Robin.Buell@uga.edu" . . "Influenza Virus Database" . . . . "Lars Bertram" . "false"^^ . . "law" . "SWEET Ontology Relationships" . . . "Identifiers for space-related data from experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . . "http://www.loc.gov/premis/rdf/v3/$1"^^ . . . "215"^^ . . . . "false"^^ . . . . "1664"^^ . "ontology" . . "98034"^^ . "http://purl.obolibrary.org/obo/RS_"^^ . "botany" . "https://bioregistry.io/reo:"^^ . "Werner Müller" . "false"^^ . "expression data" . "31253.11.sciencedb.j00001.00123"^^ . "ieee.document" . . . "https://ibdc.dbtindia.gov.in/icpd/study-view-home/$1"^^ . . . . . "53367"^^ . . "representation science provenance" . "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)."^^ . "http://www.w3.org/2006/time#"^^ . "Anna L. Kaysheva" . "^\\d{8}$"^^ . . . "cheminformatics" . . . . . . . . "iirds.sft" . . . . . "ontology" . . "plant phenotypes and traits" . . "^\\d+$"^^ . . . "Neural ElectroMagnetic Ontology" . . "HBB"^^ . "proteomics" . . . "This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011). Probe annotation was taken from A-GEOD-16699."^^ . "Genetics Home Reference" . . . "hssp" . "data retrieval" . "ontology" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Element"^^ . "life science" . . . "http://data.europa.eu/esco/skill/"^^ . "disdriv" . . . "phenotype" . . . . "https://lipidbank.jp/data/$1.cdx"^^ . . . . . . . "http://www.w3.org/ns/ssn/systems/$1"^^ . . "Castor bean ontology" . "element" . . . "https://hpscreg.eu/cell-line/$1"^^ . "20090602"^^ . "Cancer Data Standards Registry and Repository" . . "Fababean ontology" . . . "tib" . . . "https://www.merckmillipore.com/catalogue/item/"^^ . . . "0000187"^^ . . . . . . . "Arthit Suriyawongkul" . . . "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id="^^ . "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information."^^ . . "molecular biophysics" . "Biofactoid" . . "CCDC Number" . . "true"^^ . . "http://purl.obolibrary.org/obo/MAXO_"^^ . . . . . "false"^^ . . . "marine biology" . "true"^^ . . . . "false"^^ . "false"^^ . _:Nbfdaa2884ca44242baf4ce0b3593ff2b . . . . . . . . . "false"^^ . . . "chickenqtldb" . "pathway" . "ontology" . "mihail.anton@chalmers.se" . . . . . . . "false"^^ . . "OntoSpecies is an ontology developed for representing chemical species."^^ . . . "Candida Genome Database" . "materials" . . . . "Tetrahymena Stock Center" . . . . "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default"^^ . _:Nb9d010e40cf443ae9da8d8d00e394723 . "dbpedia" . . . "health science" . . "false"^^ . . "morbidity" . . . "cryptodb" . "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . "ecosystem science" . "http://sweetontology.net/phenBiol/$1"^^ . "Joao Pedro de Magalhaes" . . "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Quantity"^^ . "http://uri.neuinfo.org/nif/nifstd/nlx_res_$1"^^ . . . "computer science" . "imgt.ligm" . . "sweet.propr" . . "^([A-Z]+)?\\d+(\\.\\d+)?$"^^ . . . "^\\S+$"^^ . "Minimum Information about any (x) Sequence" . "http://purl.obolibrary.org/obo/GEO_"^^ . "Encyclopedia of Life" . . "oefos" . . "false"^^ . . "sohut" . "getty.gvp" . "false"^^ . "J0705A10"^^ . "protein" . . . "Carlos Oscar S. Sorzano" . "^[a-z0-9]{10}$"^^ . . "^AT[1-5]G\\d{5}(\\.\\d+)?$"^^ . "pahg" . . . "Educational Resource Discovery Index Schema" . . "http://sideeffects.embl.de/se/$1"^^ . "Citlalli Mejía-Almonte" . . "http://purl.obolibrary.org/obo/SO_"^^ . "https://www.ncbi.nlm.nih.gov/nlmcatalog/"^^ . . "2"^^ . . . . . . . . . "affy.probeset" . . . "bootstrep" . . . "ess" . . . . . "SWISS-MODEL Repository" . . . "ontology" . "Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource."^^ . . . . "false"^^ . "model" . . "NASA Open Science Data Repository Experiment" . "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise."^^ . "false"^^ . "kinetics" . . . "SWEET Ontology Human Agriculture" . "sophatmo" . "http://sweetontology.net/relaTime/$1"^^ . . . . . "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode="^^ . . "Cell Line Ontology [derivative]" . . "https://w3id.org/emmo/domain/battery#battery_"^^ . . "https://massbank.jp/MassBank/RecordDisplay?id="^^ . . . . . "Bactibase" . "protein" . . "57"^^ . . . "false"^^ . . "http://jcggdb.jp/idb/jcggdb/$1"^^ . . . . . "http://zinc15.docking.org/substances/$1"^^ . "protein" . . . "0000013"^^ . . "protein" . "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase."^^ . "https://bioregistry.io/registry/$1"^^ . . . . . "false"^^ . "ontology" . . . . . "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf"^^ . "compound" . . "SYMP" . . . "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones."^^ . "life science" . . "The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)\nNote that the web page that resolves this trial does not correspond to the semantic space"^^ . . "AC00963334"^^ . "^\\d+$"^^ . . "nfdi4ing" . "Groundnut ontology" . . . "functional genomics" . "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?(-\\d+)?(#PRO_\\d+)?$"^^ . . "https://www.dpvweb.net/dpv/showdpv/?dpvno=$1"^^ . "http://edamontology.org/format_$1"^^ . "false"^^ . "BandLimited"^^ . . . _:Ne8df13ff1c4c48d1a321c137020f8198 . . "^[8-9]\\d{3}(/[0-3])?$"^^ . . . . "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"^^ . . "ontology" . "RiceNetDB Gene" . . "RO_proposed_relation" . "Annual"^^ . . "protein" . . . . "map" . "http://emmo.info/emmo/cif-core#"^^ . "http://sweetontology.net/relaHuman/$1"^^ . "experimental condition" . . . . . . "SNP to Transcription Factor Binding Sites" . . . . . . . . . "false"^^ . "http://www.ontodm.com/OntoDM-core/OntoDM_"^^ . . . . "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . . . . . . . "^\\d{7}$"^^ . "jgoll@emmes.com" . "ontology" . "The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents."^^ . . . . . . . . "5HT3Arano"^^ . . "sequence feature" . "Identifiers for Major Histocompatibility Complex (MHC) restrictions of immune cells, detailing genetic factors that influence immune recognition."^^ . . . "PubChem Element" . . "A database of GlycoMaps containing 2585 conformational maps."^^ . . . . . . "^\\d+$"^^ . . . . "microbiome" . "biochemistry" . "Joachim Kopka" . "SWEET Ontology State Chemical" . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Geologic"^^ . "Doug Howe" . "Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites."^^ . . "MFCD00011659"^^ . . "The Darwin Core term establishmentMeans provides information about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans. The Establishment Means Controlled Vocabulary provides terms that should be used as values for dwc:establishmentMeans and dwciri:establishmentMeans."^^ . "The Digital Competence Framework for Citizens standard list identifies the key components of digital competence in 5 broader, and a total of 21 narrower areas, with eight proficiency levels for each concept and a few contextualising examples of use. It is maintained by DG EMPL and published by the Publications Office of the European Union on the EU Vocabularies website."^^ . "http://sweetontology.net/stateSpaceScale/$1"^^ . . . . . "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products."^^ . . . . . "sorel" . "KEGG Genome is a collection of organisms whose genomes have been completely sequenced."^^ . . . . . "https://www.ebi.ac.uk/interpro/set/pfam/"^^ . . . "ontology" . "Logical Observation Identifiers Names and Codes" . "false"^^ . . . . . . . . . "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies."^^ . . . "http://purl.enanomapper.org/onto/ENM_"^^ . . "BlackWater"^^ . "Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]"^^ . . "InterPro" . . . . "morphology" . . . . "^\\d{7}$"^^ . . . . "sopropcon" . "life cycle stage" . . . . . "http://www.ubio.org/browser/details.php?namebankID="^^ . . . . . "uminctr" . . . "multicellds" . . "cellimage" . . . . . "http://purl.obolibrary.org/obo/MIRO_"^^ . . "https://aopwiki.org/aops/"^^ . "^L\\d+$"^^ . . . "http://www.knapsackfamily.com/knapsack_core/information.php?word=$1"^^ . . . "https://www.worldcat.org/isbn/$1"^^ . . . "CognitiveCompetence"^^ . . . . "_3dmet" . . . . "^\\d+$"^^ . "false"^^ . . . "contributor roles" . . . . . . . . . . . "Barrier"^^ . . "Images used as reference"^^ . . . . . . . "true"^^ . . "74"^^ . "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1"^^ . "http://purl.obolibrary.org/obo/CTO_$1"^^ . . . . . . "arba" . "David Eisenberg" . . "EDAM Topic" . "https://bykdb.lyon.inserm.fr/data/html/annotated/$1.html"^^ . "SWAN ontology consists in a collection of ontologies used to create, manage and share scientific knowledge bases."^^ . _:N19502a138508416b9b82031ec33f8821 . "gene" . "ISBN-10" . . . . . "myco.lepra" . . "Yongqunh He" . . . . "false"^^ . . . "^AC[0-9]{8}$"^^ . "gene" . . . . . . . . . "^10.\\d{2,9}/.*$"^^ . . "comparative genomics" . . . "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources"^^ . . . "cell" . "https://saref.etsi.org/saref4ener/"^^ . "functional genomics" . "soprope" . . . . "matt@tislab.org" . "pmc" . . . . "26"^^ . . . . "true"^^ . "C. elegans Gross Anatomy Ontology" . "David Gloriam" . "false"^^ . . "NLXOEN" . "ddi.responseunit" . . "ppo" . . "speed" . "SNOMEDCT_US_2018_09_01" . . . . "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis." . . . . . . . . . "http://rs.tdwg.org/dwc/terms/$1"^^ . . . . . . . . . . "FDA Application" . "false"^^ . "Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries."^^ . "https://civicdb.org/links/variant/$1"^^ . . "obo" . . "geo"^^ . "Vertebrate Skeletal Anatomy Ontology" . . "protein analysis" . . . . "vbase2" . . . "false"^^ . "nmrXiv compound" . _:N247e046bd152418c94c4390617b6ac43 "rafael.goncalves@stanford.edu" . . . . . . . "^\\d{7}$"^^ . . . . . . . . "George Gkoutos" . . "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification."^^ . "false"^^ . . . . . "Creative Commons Schema" . "dragondb.locus" . "http://purl.obolibrary.org/obo/FAO_$1"^^ . . "http://sweetontology.net/matrWater/$1"^^ . "http://www.w3.org/2002/07/owl#$1"^^ . . . . . "INSDC CDS" . "Platynereis Developmental Stages" . . . . "scop.sunid" . "^\\d{7}$"^^ . . . . "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe."^^ . "ontology" . "genprop" . . "false"^^ . "http://purl.obolibrary.org/obo/DIDEO_"^^ . . "Drosophila Phenotype Ontology" . . . "protein" . . . . "sweet.hukd" . "nfdi4cat" . . "bdgp.est" . . "0000001"^^ . "The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary."^^ . . . "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."^^ . "https://www.storedb.org/store_v3/download.jsp?fileId=$1"^^ . "true"^^ . . . "Research Activity Identifier" . . "Robert Court" . . . . "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products."^^ . . . . . "biology" . . . . . . "Getty Thesaurus of Geographic Names" . . "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"^^ . . . "microbiology" . "UK Higher Education Statistics Agency" . . . "Ontology for PREMIS 3, the international standard for metadata to support the preservation of digital objects and ensure their long-term usability."^^ . . "false"^^ . . . . . . "64ba"^^ . . "dso" . "computer science" . "false"^^ . . "lipidomics" . . "http://www.jstor.org/stable/$1"^^ . . . . . . . "^\\d+$"^^ . "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort."^^ . . . . . . . . . . . . "protein" . "sorepsg3" . . "obo" . . "817732"^^ . "Toxin and Toxin Target Database" . . . "pba" . "^\\d+$"^^ . "hospital" . . . . . "open educational resource" . . . "github.pull" . . "wiley"^^ . "chemical biology" . . "ecocyc" . . . "NFDI MatWerk Ontology" . "MHC Restriction Ontology" . . . . . . "http://sweetontology.net/phenSolid/$1"^^ . . . "false"^^ . . "subject agnostic" . . "AnalogSignal"^^ . . . "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."^^ . . "systems engineering" . . . . . "yoh@dartmouth.edu" . "An organization in FAIRsharing, including universities, labs, etc."^^ . . "http://sweetontology.net/relaClimate/$1"^^ . "metabolite" . . . . . "https://www.sharkipedia.org/species/"^^ . "P0DP23"^^ . "Edgar Wingender" . "http://rds.posccaesar.org/ontology/lis14/rdl/"^^ . "https://cropontology.org/rdf/CO_348:"^^ . . "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides."^^ . "http://www.bioassayontology.org/bao#BAO_$1"^^ . "Allgemeines Metadatenprofil für Bildungsressourcen" . . . . "roman@ebi.ac.uk" . "ngbo" . "tgbugs@gmail.com" . "biology" . . "pandit" . "http://sweetontology.net/reprMathFunctionOrthogonal/$1"^^ . . . "nomen" . . . "false"^^ . "steven.marsh@ucl.ac.uk" . . . "^(CE[0-9]{5}|WB[A-Z][a-z]+\\d+)$"^^ . . . . . . "genomics" . . . "PeptideAtlas Peptide" . "Laurel Cooper" . "metanetx.chemical" . . . . . . "COlleCtion of Open Natural ProdUcTs" . . . "International Committee on Taxonomy of Viruses Ontology" . "transposon insertion" . . . . . "https://terminology.tib.eu/ts/ontologies/$1"^^ . "http://iirds.tekom.de/iirds#"^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Orogen"^^ . . "recombinant host" . "http://purl.obolibrary.org/obo/T4FS_"^^ . . . . "^\\d+$"^^ . . "ontology" . . "plm" . "http://purl.obolibrary.org/obo/PLO_"^^ . . "https://cbcb.cdutcm.edu.cn/AGD/genome/details/?id="^^ . . "nihgeneid" . . "dataplant" . . "The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]"^^ . . . . "A pull request in any public repository on GitHub."^^ . . "Anthromes"^^ . . "identifier for a researcher in a system for scientific authors, redirects to a Web of Science ID, along with P3829"^^ . . "social science" . . . . . . . "^[A-Z0-9]{4}\\.[A-Z0-9]{2}$"^^ . . "http://purl.obolibrary.org/obo/NCRO_$1"^^ . "lucas.leclere@obs-banyuls.fr" . "17186"^^ . . . . "DEF"^^ . . . . "c elegans" . . . "environment" . "inaturalist.taxon" . "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" . . . . . "neurobiology" . "molecular neuroscience" . . . "dataplant" . . "history" . . . "http://gmd.mpimp-golm.mpg.de/Spectrums/$1"^^ . "https://www.iedb.org/reference/$1"^^ . "AnabaticWind"^^ . . "ontology" . "deims.activity" . . "fid baudigital" . . . . . . "Christophe Dunand" . "frederique.lisacek@isb-sib.ch" . "Force"^^ . . . . . "http://bimerr.iot.linkeddata.es/def/information-objects#$1"^^ . "https://catalog.integbio.jp/dbcatalog/en/record/$1"^^ . . . "IRCT20080904001199N7"^^ . "FlyMine Chromosome Band" . . . "https://w3id.org/bervo/BERVO_"^^ . . . . "protein" . "^\\w{3}\\d+$"^^ . . "The GVP Ontology defines classes, properties and values (skos:Concepts) used in GVP LOD. As of version 3.0, it is complete regarding AAT, TGN and ULAN, and will be extended in time with more elements needed for other GVP vocabularies (CONA)."^^ . "literature" . "^\\d{7}$"^^ . . . "Database of Genomic Structural Variation - Variant" . . "^\\d{7}$"^^ . "dc.elements" . . . . . "false"^^ . "TreeFam" . . "NCBI Probe database Public registry of nucleic acid reagents" . . "biomedical science" . "environmental science" . . . "false"^^ . . "breeding" . . . "MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for proteins that serve as molecular targets in cell-based bioactivity measurements."^^ . . "https://w3id.org/gaidet/$1"^^ . . "kronkcj@mail.uc.edu" . . . . "materials" . . . . "RXN-14904"^^ . "ndex" . "https://bioregistry.io/elm:"^^ . . "http://purl.obolibrary.org/obo/FOBI_$1"^^ . "https://www.wwpdb.org/pdb?id=pdb_0000"^^ . . . "The Unified Astronomy Thesaurus (UAT) is an open, interoperable and community-supported thesaurus being developed to unify the existing divergent and isolated Astronomy & Astrophysics thesauri into a single high-quality, freely-available open-source thesaurus which will be of immediate value to both research and research support, and provide a mechanism for reviewing, discussing and evaluating the continuous evolution of terminology in these fields."^^ . . . "true"^^ . "Web Ontology Language" . "A type for entries in the Bioregistry's registry." . "ODAM Data explorer" . "https://w3id.org/ac-ontology/aco#"^^ . "dc.terms" . . . "https://www.molgluedb.com/browseDB/$1"^^ . . . . "civic.disease" . "^ENSGT\\d+$"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Biomass"^^ . . "https://e-cyanobacterium.org/models/model/"^^ . "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene."^^ . . "Zazuko Prefix Server" . "nutritional science" . . . . . . . "SWEET Ontology Phenomena Heliosphere" . . "representation scientific units" . . . . "anatomy" . . _:N94176c25c9e04886b6059de74919d31f "Kim Petersen" . . . "false"^^ . . . "https://ligandbook.org/package/$1"^^ . . "life science" . . . "false"^^ . "International Genome Sample Resource" . . "Molecular Interactions Controlled Vocabulary" . . "https://w3id.org/i40/sto#"^^ . . "babelon" . . . . "dna" . . "nfdi4cat" . "false"^^ . "dommino" . "http://purl.obolibrary.org/obo/LPT_"^^ . . "http://sweetontology.net/phenAtmo/"^^ . "sweet.reah" . . . "ontology" . . . . . "http://purl.obolibrary.org/obo/PO_"^^ . . . "sgn" . . "https://guolab.wchscu.cn/AnimalTFDB4//#/family_summary/TF/$1"^^ . . . . . "electronic health record" . . . "go.chebi" . . . . . "UniPathway Compound" . . . . . . . "Union List of Artist Names" . "genomics" . . "ontology" . . . "https://www.ebi.ac.uk/chembl/compound/inspect/"^^ . "metadata" . . . "hao" . "false"^^ . "MNXR101574"^^ . "biomedical science" . "CryptoDB" . . "0400109"^^ . "VMH Gene" . . "synbip.epitope" . . . "false"^^ . "mim.ps" . . . . . . . "https://vocabularies.cessda.eu/vocabulary/GeneralDataFormat?lang=en#code_"^^ . . "data integration" . . "The Category Scheme Election Studies provides the ability to categorize election studies at the question and/or variable level."^^ . . . . . "dcterms" . "echinobase" . "rbca.jackson@gmail.com" . "false"^^ . "^CDBG000\\d{5}$"^^ . . . . . . "SWEET Ontology Property Chemical" . . . "post-translational modification site prediction" . . "frbr"^^ . "3dmet" . . "This is an ontology draft for the description of metadata of traffic observations, in particular video recordings of road traffic. The traffic observations are e.g. used to design test scenarios for the effectiveness assessment of automated driving systems. \n\nThe ontology draft resulted from an exchange of the Chair of Automobile Engineering at TU Dresden (https://tu-dresden.de/bu/verkehr/iad/kft?set_language=en) with representatives of NFDI4Ing (Community Cluster 4.4, Archetype Golo, Base Services S3) and FID move in NFDI4Ing's Special Interest Group \"Metadata and Ontologies\". An essential part of that meeting was the presentation of the reseaerch data management approach at the Chair of Automobile Engineering, in particular its tooling, its metadata approach and its workflow.\n\nTraffic observations are managed with ListDB, a solution combined of a SharePoint instance and a virtual machine for data servicing . An accompanying Codebook defines relevant metadata that should be provided for each road traffic observation. ListDB is currently used internally within TU Dresden, but is intentended to be hosted publicly until spring 2023. \n\nThe ontology draft is, in fact, based on the Codebook (v. 1.0.0.) and an attempt to make a machine-readable document out of it, applying standards from the Semantic Web Stack (RDF(S) and OWL). The draft is constantly being developed further in this context."^^ . . "false"^^ . "https://modeldb.science/modellist/$1"^^ . "WGS-95-1333"^^ . "linkContext"^^ . "0000121"^^ . . . . . "https://bioregistry.io/schema/#"^^ . . . "general & upper" . "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id="^^ . "^\\d{7}$"^^ . . "false"^^ . . . . . "UM-BBD_enzymeID" . . . . . . . . "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease."^^ . . "hmsl_id" . "SWEET Ontology Phenomena Environmental Impact" . . . . . . "true"^^ . . . . . . . . . . "false"^^ . "soreala" . "General Enquiries" . . . . . "food security" . . . . . . "ELI Metadata Ontology" . "qb" . . "gene" . . . "agilent.probe" . . . "somarocki" . . . . "false"^^ . . . . . "https://www.ebi.ac.uk/chembl/cell_line_report_card/$1"^^ . "Version 0.4 to 1.0 fixed reversed dsw:locates and dsw:locatedAt. Added labels. Changed comments and descriptions to conform to DC and DwC precedent. Added subClassOf relations to RO hasEvidence and isEvidenceFor. Specified preferred direction for inverse object property pairs., Changes from version 0.2.1 to version 0.3: removal of all functional and inverse function properties of object property terms, use of dwctype classes, deprecation of terms replaced by dwciri: terms, removal of references to TDWG Ontology., Changes from version 0.3 to 0.4 change DwC class namespace from dwctype: to dwc: to follow class proposal, removed references to TDWG TaxonConcept ontology; deprecated terms that now have equivalent terms in Darwin Core., Change from version 1.0 to 1.0.1 Add CC0 license."^^ . "Medical Dictionary for Regulatory Activities Terminology" . . . . . . . . "^sbp\\d+$"^^ . "sweet.st" . "disease" . "This ontology extends the SAREF ontology for the environment domain, specifically for the light pollution domain, including concepts like photometers, light, etc."^^ . "extraction_set"^^ . "http://sweetontology.net/reprMathStatistics/$1"^^ . . . "https://go.drugbank.com/drugs/"^^ . . . . "centrally registered identifier" . "false"^^ . . . "Maryann Elizabeth Martone" . "repec" . . . . . . . _:N7796c59bc4b34521bcdd078c6c0b76c3 . . . "^[1-9]\\d*$"^^ . "false"^^ . . . "genome" . "http://purl.obolibrary.org/obo/LPT_$1"^^ . . . . . . . "cellosaurus" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Space"^^ . . "obo" . . . . . "Alkane"^^ . . . "Unified Medical Language System Concept Unique Identifier" . . . . . "chebi" . . . . . . . . "Medical Dictionary for Regulatory Activities" . . . . . . "educational science" . . . "https://www.glycoepitope.jp/epitopes/$1"^^ . . . . "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation."^^ . . . "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1"^^ . "protein" . "ontology" . "^[A-Z0-9]{1,10}_[A-Z0-9]{1,5}$"^^ . . "https://vocabularies.cessda.eu/vocabulary/TypeOfNote?lang=en#code_$1"^^ . . . "189"^^ . . . . "iao" . . . . . . . "AnnualCycle"^^ . "false"^^ . "PhosphoPoint Phosphoprotein" . "proteomics" . "B10000000000_3"^^ . . "false"^^ . . . . . . . "sweet.props" . . "A battery interface domain ontology based on EMMO."^^ . "http://sweetontology.net/reprMathGraph/"^^ . . . "unesco.thesaurus" . "AgriculturalProductionFacility"^^ . . . . . "International repository of Adverse Outcome Pathways."^^ . . "NodeShape"^^ . . "PREFER Ontology" . "^(\\w+)?\\d+$"^^ . . . . "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location."^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Representative"^^ . . . "sostp" . . "tib.lis" . . "http://purl.org/dsw/"^^ . . "structure" . "HsapDv" . "false"^^ . "This is the MathModDB Ontology for documenting mathematical models."^^ . . "Event Venue Registry" . "https://ferr.gulab.org.cn/browse/$1"^^ . "http://vocab.nerc.ac.uk/collection/P07/current/$1"^^ . . . . "whole plant development stage" . . "https://biosimulations.org/projects/"^^ . "LGCEDe-S-000002244"^^ . "http://purl.obolibrary.org/obo/ZFA_$1"^^ . . . . . "true"^^ . . . . . . . . "representation scientific model" . . . . . "^[0-9A-Z]+(\\.[0-9A-Z]+)?$"^^ . "Abcam" . . "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life."^^ . "1580791"^^ . . . . "https://www.ebi.ac.uk/ipd/imgt/hla/alleles/?query=eq(name,%22$1%22)"^^ . . . . . . "^\\d{7}$"^^ . "http://www.innatedb.ca/getGeneCard.do?id="^^ . . "http://www.pharmgkb.org/disease/"^^ . . . "true"^^ . . . . . . . "^\\d+$"^^ . "false"^^ . "ordinal" . . . . "transcriptomics" . . . . . . "^DRSC\\d+$"^^ . . . "true"^^ . . . . "gbif" . "0154"^^ . . . . . . . . "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1"^^ . . "disease course" . "false"^^ . "http://sweetontology.net/propCapacity/$1"^^ . . "http://www.cathdb.info/cathnode/"^^ . . . "sweet.hud" . . . "resource discovery" . . . . . . . "todd@wormbase.org" . . . "DICOM Controlled Terminology"^^ . . . . . "http://purl.obolibrary.org/obo/PLANP_"^^ . . "A10BA02"^^ . . . "Minimal Anatomical Terminology" . . "true"^^ . . . "bioinformatics" . "0000013"^^ . "clinical data" . . . "frbr" . "http://purl.obolibrary.org/obo/VO_"^^ . . . . . . "obo" . . . "0000712_1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Hydrosphere Body"^^ . "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis."^^ . . "life science" . . . . . "rex" . . . . . . . "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"^^ . . . . . . "dinto" . . "http://www.gramene.org/db/ontology/search?id=GRO:"^^ . "ec" . . "locn" . "yeastract" . "http://purl.obolibrary.org/obo/DC_CL_"^^ . "tib.mdo" . . . "ddi.datasourcetype" . "^HBG\\d+$"^^ . . . . "subject agnostic" . . . . "^[0-9][A-Za-z0-9]{3}$"^^ . "security" . . "skills" . "Transcription Factor Database" . . "food" . . "https://reaxys.emolecules.com/cgi-bin/more?vid=$1"^^ . "RealmConfiguration"^^ . . "txpo" . . "disease" . . . . "false"^^ . . . . "diagnosis" . "https://www.ncbi.nlm.nih.gov/research/cog/cog/"^^ . . "false"^^ . "http://sweetontology.net/stateRole/"^^ . "false"^^ . . . . "Heat Pump Ontology" . . "CorrDB" . . . . . "genotype" . . . "person" . _:N5e31c16544e14b3fa76dc2698579a8f2 . "SWEET Ontology State Space Configuration" . . . "glycomics" . . . . "The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.\n\n\n![SAREF4SYST overview](diagrams/overview.png)"^^ . . . . "botany" . . . "obo" . . . . . "http://vita.mbc.nctu.edu.tw/search.php?acc=$1"^^ . "false"^^ . "false"^^ . . "^[a-z]+/[0-9]+$"^^ . . "tib.dot" . . . . . . "http://sweetontology.net/matrRockIgneous/"^^ . "https://purl.brain-bican.org/ontology/hbao/HBA_"^^ . "http://purl.bioontology.org/ontology/CSP/$1"^^ . . . . . . . . "551115"^^ . . "^\\d{7}$"^^ . "obo" . "Ensembl" . "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups."^^ . . . . "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.\nWikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others."^^ . "jmwhorton@uams.edu" . . . "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species."^^ . . . . "live animal" . "Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining subclasses and subproperties of SIOC terms."^^ . . "ontology" . . "http://purl.obolibrary.org/obo/DUO_$1"^^ . "https://gdo.endlessforms.info/view/classes?uuid=GDO_"^^ . . . "A vocabulary of taxonomic ranks (species, family, phylum, etc)"^^ . . . . . . . "DiscoverX cell line products" . "Crop Ontology Curation Tool" . . "vendor" . "https://data.chembiosys.de/investigations/$1"^^ . . . "CIÊNCIAVITAE ID" . . . "false"^^ . . . . . "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project."^^ . "Mechanism, Annotation and Classification in Enzymes" . . . "false"^^ . "Asteraceae Genome Database - Genome" . . . . . "3851"^^ . . . _:Nd0b09e58073b4e0b8e512e0bef14a801 "Usha Mahadevan" . "piroplasma" . . . . "false"^^ . . . . . . . . "https://cropontology.org/term/$1:$2" . . . "false"^^ . . "G-Rich Sequences Database" . . "false"^^ . . . . "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice="^^ . "Oryzabase Stage" . . "KEGG_PATHWAY" . "http://www.pathwaycommons.org/pc/record2.do?id="^^ . "Andrea Jacobs" . . "0000091"^^ . . . "soproc" . . . "cio" . "^\\d+$"^^ . . . . . "false"^^ . "equipment" . . . "rmrich5@gmail.com" . . . . . "https://pmb-bordeaux.fr/dataexplorer/?ds=$1"^^ . . "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome."^^ . . "https://www.uniprot.org/uniprotkb/"^^ . . "Asiyah Yu Lin" . . "https://mycobrowser.epfl.ch/genes/$1"^^ . . . . . . "drug development" . . "false"^^ . . . . . . "ATL98012"^^ . . . "ised" . "Behavior"^^ . . "https://www.pharmvar.org/gene/$1"^^ . . "dbd" . . . "false"^^ . . . . "000001"^^ . "chemical" . . . . "https://bio.liclab.net/diabetesOmicdb/RNA-seq?sampleId=$1"^^ . "nikolaos.moustakas@catalysis.de" . "false"^^ . . . . "http://purl.obolibrary.org/obo/IOIO_$1"^^ . . "^\\d{7}$"^^ . . . . . "https://viperdb.org/Info_Page.php?VDB=$1"^^ . . . . . . . . . "BioSample" . "Minimum Information about a Tailoring Enzyme data repository" . . "COMBINE specifications" . . "DrugBank Metabolite" . "ontology" . . "https://saref.etsi.org/saref4ehaw/$1"^^ . "Montana Smith" . . . "somaf" . "sophfi" . "Cellular Microscopy Phenotype Ontology" . "SWEET Ontology State Role" . . . . . . "https://www.ncbi.nlm.nih.gov/nuccore/"^^ . . "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species="^^ . "http://purl.obolibrary.org/obo/IAO_$1"^^ . . "P29894"^^ . . . "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information."^^ . . "http://bimerr.iot.linkeddata.es/def/key-performance-indicator#"^^ . "LG Chemical Entity Detection Dataset (LGCEDe)" . "false"^^ . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/DateType?lang=en#code_$1"^^ . . . . "genetics" . . . . . . . "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France)."^^ . "https://data.nist.gov/od/dm/nmrr/vocab/?tema=$1"^^ . . . . "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia.variant' prefix is used for genetic variants associated with phenes listed in OMIA"^^ . . "sweet.stst" . "Anion"^^ . . "phenomena" . "http://dramp.cpu-bioinfor.org/browse/All_Information.php?id="^^ . . . . "sequence" . . "PiroplasmaDB" . . . . . "phenomics" . . . . "SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases."^^ . "false"^^ . "0045310"^^ . . "International Classification of Diseases, 10th Revision, Procedure Coding System" . . . . . "sweet.phgv" . . "https://w3id.org/semanticarts/ns/ontology/gist/"^^ . . "rapdb.locus" . "PANTHER Pathway" . "chemfont.chemical" . . . "publications" . "https://cellxgene.cziscience.com/collections/$1"^^ . "^F\\d{4}$"^^ . "wptypes" . . "^\\d+$"^^ . "An ontology of metadata from protege"^^ . . . . . . "life science" . "http://id.loc.gov/authorities/genreForms/$1"^^ . . "https://www.ebi.ac.uk/pride/archive/projects/$1"^^ . "life science" . . . . "HUMAN0000001"^^ . . . "civic.vid" . . . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm"^^ . . . . . . "ontology" . . "ECMDB" . "http://www.whocc.no/atcvet/atcvet_index/?code=$1"^^ . . . "http://bigg.ucsd.edu/compartments/"^^ . . . "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines."^^ . . . "encode" . . . . . . . . "false"^^ . . "NCBI Orthologs" . "rcc"^^ . . . . . . "ontology" . "98127"^^ . . . _:Nb10ba5affc994ec9ab0861313cc0db98 . "EMAPA_RETIRED" . "http://data.europa.eu/esco/isco/$1"^^ . . "cryopreservation" . "false"^^ . "false"^^ . . "representation mathematics solution" . . "http://pombe.oridb.org/details.php?id=$1"^^ . "false"^^ . . . . . "http://purl.obolibrary.org/obo/OGSF_$1"^^ . . . "biospecimen" . . "study design" . . . . "schema" . "AY109603"^^ . "false"^^ . "3"^^ . . . . . . . . . "glycoepitope" . "sequence variant" . . "ero" . . . . "UM-BBD_compID" . . "false"^^ . "International Data Spaces Information Model" . "046"^^ . . . "SWEET Ontology Material Compound" . "developmental biology" . "false"^^ . . . . . . "https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_$1"^^ . "false"^^ . . "SNOMEDCT_US_2024_03_01" . "health" . . . "278"^^ . . . . . "ontology" . . . "rat model" . . "Flavor and Extract Manufacturers Association" . . . . "Ontology for Biomedical Investigations" . "hasPhenomena"^^ . . . . "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations."^^ . "^\\d+$"^^ . . . "false"^^ . "https://fda.report/applications/"^^ . . "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products."^^ . "Indicates the frequency of data collection events."^^ . "A mid-level ontology for representing metadata related to NFDI resources, including individuals, organizations, projects, data portals, and more"^^ . . . "Nikolaos Moustakas" . . "ICD9_2005" . "0000140"^^ . "biocuration" . . . "SABIO-RK Compound" . . . . . . "false"^^ . . "somaw" . . . . . "false"^^ . . "Jeremy D. Glasner" . . . "Consensus CDS" . . . "Fernanda Dorea" . "mirte" . . . "Locations in DEIMS SDR"^^ . . "Gramene protein" . . . "false"^^ . "pharmacogenomics" . "sweet.repdp" . "life science" . . . "structure" . "agriculture" . . "false"^^ . . . . "linguistics" . . . . . "m.naguthana@hotmail.com" . "This ontology extends the SAREF ontology for the smart grid domain."^^ . . . . . "Sequence-Structural Templates of Single-member Superfamilies" . . . . . . "http://purl.obolibrary.org/obo/CTENO_$1"^^ . . . . "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible."^^ . . . "false"^^ . . "life science" . . . "fluid dynamics" . "^\\d+$"^^ . "false"^^ . "2.16.840"^^ . "drug" . . . "https://i.uestc.edu.cn/AACDB/details.php?id=$1"^^ . "https://coconut.naturalproducts.net/compound/coconut_id/$1"^^ . "transcriptomics" . . . . "AGR" . . . . . "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read."^^ . . "http://purl.obolibrary.org/obo/OCCO_"^^ . . . "00073"^^ . "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks."^^ . . . "ebusiness" . . . "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"^^ . . . . . "IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR."^^ . "false"^^ . . "topfind" . "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."^^ . "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"^^ . "tib.sto" . . . "0100010"^^ . . . . . . . . . . "Supplier of mice for research purposes. [from RRID]"^^ . . . . "molecular dynamics" . . . "sorealf" . . "genome" . . . "^\\d+$"^^ . "RIKEN Bioresource Center Cell Bank" . . . . . . . "SWEET Ontology Human Jurisdiction" . "life science" . . . "http://sabiork.h-its.org/newSearch?q=ecnumber:$1"^^ . . "http://purl.obolibrary.org/obo/AISM_$1"^^ . "http://sweetontology.net/phenOceanDynamics/"^^ . . "genomics" . "blast" . "r.huntley@ucl.ac.uk" . . . . "life science" . . . "false"^^ . "ontology" . "ontology" . "obo" . "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur."^^ . . . . "Lentil Trait Dictionary in template v5 - ICARDA - July 2015"^^ . . . . . . . "false"^^ . . . . "http://www.w3.org/2011/content#"^^ . . . "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1"^^ . "http://www.bind.ca/Action?identifier=bindid&idsearch=$1"^^ . . . . . . "life science" . "nepomuk.nao" . . . "Area"^^ . "cell biology" . "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information."^^ . . "Michael Hucka" . "rat" . "monitoring" . "ontology" . . "ontology" . . . "archaeology" . . "http://sweetontology.net/relaSpace/$1"^^ . . "https://mycobrowser.epfl.ch/genes/"^^ . . . . "CHEBIID" . . "iot" . "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature."^^ . . "http://sweetontology.net/phenWaveNoise/$1"^^ . . . . . . "sioc.actions" . . . . . . . . . . . "The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits."^^ . . "bmrb.entry" . . . . "drug discovery" . "obo" . "https://euclinicaltrials.eu/app/#/view/"^^ . . . "https://mmp.sfb.uit.no/databases/marfun/#/records/$1"^^ . . . . . . . . . . . . "fyeco" . . . . . "illumina.probe" . "Cultural Objects Names Authority" . . . "identifier for a chemical compound per EINECS or ELINCS"^^ . . "obo" . "obo" . . "DFG Fachsystematik Ontology / DFG Classification of Subject Areas Ontology (DFGFO) encodes the DFG Classification of Subject Areas into an ontology, where each subject number are is enconded into a Class with subclass statements following the DFG Classification of Subject Areas hierarchy. Labels are provide German and English."^^ . . "biomedical science" . . . . . . . "interpro" . "diffusivity" . "ontology" . . "protein" . "^\\S+$"^^ . . . . . . "^[a-zA-Z0-9 +#'*]+$"^^ . "plant phenotypes and traits" . . . . . . "uspto" . . . . "^A\\d+$"^^ . . . . "false"^^ . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . . . . . . "^A\\d{4}$"^^ . . . "false"^^ . "nfdi4ing" . "false"^^ . "Selventa Complexes" . "https://dataguids.org/ga4gh/dos/v1/dataobjects/"^^ . "life science" . . "genome" . . . "http://uri.neuinfo.org/nif/nifstd/nlx_$1"^^ . "DB14938"^^ . "drug" . . . "loqate" . "Leszek@missouri.edu" . "http://metlin.scripps.edu/metabo_info.php?molid="^^ . . "aisling.doyle9@gmail.com" . "false"^^ . "false"^^ . . . . . "false"^^ . . . "health science" . "sequence" . "^\\d+$"^^ . . "false"^^ . . . "jhc@lbl.gov" . . . "false"^^ . . . "ontology" . . . . . . "phosphopoint.kinase" . "Genotype-Tissue Expression" . . . . . . . "mi" . . . "http://purl.obolibrary.org/obo/TXPO_"^^ . . "SNOMEDCT_US_2022_12_31" . "false"^^ . "http://sweetontology.net/phenFluidDynamics/$1"^^ . . . . . . . . . . . "https://w3id.org/mdo/$1"^^ . . "^PED\\d{5}$"^^ . . . . . "nasaosdr.biospecimen" . . _:Nb937b7cdfd0741a38f7e36aa0edcdcc5 "custserv@nlm.nih.gov" . "diagnosis" . . "Carlo Ravagli" . . . "Rice Genome Annotation Project" . . . . . . . . "Identifiers represent experimental tools and resources for neurofibromatosis (NF) research in the NF Data Portal Tools catalog."^^ . . . . "ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for human proteins that interact with chemoproteomic probes."^^ . . "Underlying schema for POWDER"^^ . . "http://rds.posccaesar.org/ontology/lis14/rdl/$1"^^ . "true"^^ . . "Stephan Sinn" . "Sol Genomics Network" . . . "pr" . . "^[A-Z]{6}(\\d{2})?$"^^ . . "A database-specific registry supporting curation in the Gene Ontology" . . "pathoplant" . "false"^^ . . . . . . . . . . "^\\d{7}$"^^ . . . . . . . . "false"^^ . "^\\d+$"^^ . . "An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege."^^ . "IEEE Xplore document ID" . . "^\\d{8}$"^^ . "http://purl.obolibrary.org/obo/GAZ_$1"^^ . . . . . . . "obo" . . . . . "https://fanta.bio/cre/$1"^^ . "Anne Morgat" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Ion"^^ . "supply" . "false"^^ . . "https://animaldiversity.org/accounts/$1"^^ . "myco.marinum" . "pylebail@rennes.inra.fr" . . . . "catalogs" . "false"^^ . . "obo" . "alzheimer's disease" . . "0000139"^^ . . . . "vbrc" . "https://bacdive.dsmz.de/strain/$1"^^ . . . . "http://sweetontology.net/relaSpace/"^^ . "interaction" . "http://vbrc.org/gene_detail.asp?gene_id="^^ . . . "open educational resources" . . . "Association-Rule-Based Annotator" . "Siqian He" . "obo" . . "disease" . . . "life sciences, biology" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Materials"^^ . . "RSNA Informatics RadLex" . . . "wot.tm" . . . . "false"^^ . "botany" . . "life science" . . "seed.compound" . _:Nc66f2f6eaa6e4a5985c13857fc589cd4 "elzanowski@biol.uni.wroc.pl" . . "false"^^ . . . "gene expression" . . "tricdb" . "http://synbip.idrblab.net/data/bts/details/"^^ . "Higher order grouping of Pfam families"^^ . . "false"^^ . . . . "G protein-coupled receptor database" . . "false"^^ . . "database" . "Measurement method ontology" . "adriano.rutz@ik.me" . . "false"^^ . . "bpeters@lji.org" . "small molecule" . "basic research" . . "medicine" . "^\\d+$"^^ . . "co_366" . . . "false"^^ . "S6"^^ . . . "https://bioregistry.io/collection/"^^ . "https://cropontology.org/rdf/CO_350:$1"^^ . . _:N96a8ee2f519e42ce94b4fa8219a1830a "maria.herrero@kcl.ac.uk" . . "http://sweetontology.net/realmOceanFeature/"^^ . . . . . . . . "http://www.signaling-gateway.org/molecule/query?afcsid=$1"^^ . . . . . . . . . . "https://osdr.nasa.gov/bio/repo/data/hardware/$1"^^ . "smr@stowers.org" . "VAs-09.01"^^ . . . . . "https://images.endlessforms.info/image/$1"^^ . "Primate Brain Atlas" . . . . . "TrichDB" . . "comparative genomics" . . . . "NCBITaxonomyID" . "https://saref.etsi.org/saref4syst/"^^ . . . . . "j.harry.caufield@gmail.com" . "Ensembl Glossary" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Feature"^^ . . "HomoloGene" . . "protein complex" . . . . . . "agriculture" . . . . "eubopen" . . "https://dialnet.unirioja.es/servlet/articulo?codigo="^^ . "NCBI_GeneID" . . . . . . "Indicates the statistical software package used in the production/processing/dissemination of the data. Data collection software is not covered in this list."^^ . . . . "cognition" . "Jackson Laboratories Mouse Strain" . . . "school subject" . _:N975c99ba567943278c37f21f86ee22b1 "mejino@u.washington.edu" . . _:N30efe5e29e344b5181088845f2bda8da "custserv@nlm.nih.gov" . . "genome" . "MycoBrowser marinum" . . . . . "ICEberg integrative and conjugative element" . . . . "http://purl.org/spar/pwo/$1"^^ . "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names."^^ . "uniprot.disease" . "mouse strain" . . "mao" . . . . . "Philipp.Bucher@sib.swiss" . "w3c rec" . . . "0000010"^^ . . . . "TP53"^^ . . . . . . . . . . "Vilma Hualla Mamani" . . "MCDS_L_0000000001"^^ . . . . . . "https://www.inaturalist.org/places/"^^ . . . . . "CAS Registry Number" . "Rice annotation Project database" . . . "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"^^ . "Hugh.Shanahan@rhul.ac.uk" . . "BallLightning"^^ . . . "Agricultural Online Access" . "ocean floor" . . . "pandey@jhmi.edu" . . "http://vocab.getty.edu/page/cona/"^^ . "Obstetric and Neonatal Ontology" . . . . . . . . "biomedical science" . "An ontologization of Public Library of Science (PLOS) journal keywords and topics. It's not clear how the IDs correspond to the actual pages. Appears in ADCAD."^^ . . "gene" . "Animal Genome Chicken QTL" . . . . . "animal organ development" . "sweet.maeq" . . . "phenotype" . . "nmrxiv.sample" . "http://id.loc.gov/ontologies/bibframe/"^^ . "wiktionary" . . "^\\d+$"^^ . "gtr.lab" . "http://biohackathon.org/resource/hco#$1"^^ . . . . . . . "SWEET Ontology Representation Representation Scientific Methodology" . "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase."^^ . . . . "sorepsc" . . "genome" . "AOPWiki (Stressor)" . "structure" . "Includes a typology of data sources."^^ . "https://www.perkinelmer.com/searchresult?searchName="^^ . . "Datasets published by the Publications Office of the European Union"^^ . "getty.ia" . "^[a-zA-Z0-9]+(-[a-zA-Z0-9]+)+$"^^ . "false"^^ . . "SWEET Ontology Property Rotation" . . . "http://www.humanproteomemap.org/spectrum.php?pep_id=$1"^^ . "false"^^ . "genome" . . . "NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO)."^^ . . . "IMGT/HLA human major histocompatibility complex sequence database" . "soreas" . "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome."^^ . . . . "https://www.arabidopsis.org/locus?accession="^^ . . . "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information."^^ . . . "7123"^^ . . . . . . "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID="^^ . "image" . "linked open data" . . "difference" . . "agricultural products" . . "resource metadata" . . . . "^\\w{1,2}\\d+$"^^ . "ontology" . . "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa"^^ . . . . . . . . . . . "The Drug-Drug Interactions Ontology" . . . "SAREF4WEAR is an extension of SAREF for Wearables"^^ . . . "http://purl.obolibrary.org/obo/ZFA_"^^ . . "false"^^ . "https://cropontology.org/rdf/CO_333:$1"^^ . . . "nfdi4ing" . . "MobiDB is a database of protein disorder and mobility annotations."^^ . . "oeo" . "somaem" . . . . . . _:N7a4a11c10afa46569a4bb922d8cea8d9 . . . . . . . "GenPept" . . . . . . . . . "realm" . . "Data Type" . "enables"^^ . . . . . . "geology" . . . . "Cross-linker reagents ontology" . "false"^^ . . "https://bioregistry.io/iceberg.cime:"^^ . . . . "small molecule" . "life science" . "Research Resource Identifiers" . "false"^^ . . . "^\\d+$"^^ . . "yongqunh@med.umich.edu" . . . "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1"^^ . . . . "^S-[A-Z]{4}[\\-\\_A-Z\\d]+$"^^ . "http://purl.obolibrary.org/obo/TADS_"^^ . . "http://purl.obolibrary.org/obo/PGDSO_$1"^^ . . "cordis.article" . "T039"^^ . . . "The Europeana Data Model (EDM) is aimed at being an integration medium for collecting, connecting and enriching the descriptions provided by Europeana data providers. The RDF vocabulary for http://www.europeana.eu/schemas/edm/ defines the elements introduced by EDM (as opposed to the ones EDM re-uses from other namespaces)."^^ . . "https://cropontology.org/rdf/CO_358:"^^ . . . . . . . . . . . "https://mite.bioinformatics.nl/repository/$1"^^ . . . "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract)."^^ . . "subject agnostic" . . . . . . . "Mihail Anton" . . "fairsharing.organization" . . "cell" . . "235" . "MeDRA" . "^\\d{4,}$"^^ . . . . . . "https://tools.ietf.org/rfc/rfc$1"^^ . . "Contributor Role" . . "Cell line collections (Providers)"^^ . "rfam" . . "false"^^ . "S-EPMC6266652"^^ . . . . . . . "nbdc01071" . . "http://purl.obolibrary.org/obo/DISDRIV_$1"^^ . . . . . "0001927"^^ . . "HOSO is an ontology of informational entities and processes related to healthcare organizations and services."^^ . . "Val Wood" . . "PhageDive" . . . . . "false"^^ . "Animal Genome Sheep QTL" . . "Friend of a Friend" . "false"^^ . . . . . . "http://www.ebi.ac.uk/cmpo/CMPO_"^^ . "RID1"^^ . . . "soreaab" . . . "16"^^ . . . "PSI-MOD" . . . . . "^\\d+$"^^ . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/"^^ . "Encyclopedia of Life Schema" . "genomics" . _:Nebd7d29858854ffaab04f09023b7ed08 "sschurer@med.miami.edu" . . "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein."^^ . . . . . . "software"^^ . . . . "International Medical Device Regulators Forum" . "false"^^ . . . "The EVORAO Ontology provides a structured and harmonized vocabulary for describing shareable pathogens as characterized biological materials, along with their derived products and associated services, organized into collections. Developed within the EVORA project, it supports consistent metadata annotation across research infrastructures, promoting findability, accessibility, interoperability, and reusability (FAIR). By aligning with relevant standards and ontologies, EVORAO facilitates cross-domain collaboration, integration, and sharing of pathogenic resources and services to enhance pandemic preparedness and response. While initially focused on virology, EVORAO is designed to be extensible and also supports metadata harmonization for other pathogens. [from repository]"^^ . "false"^^ . "https://www.novusbio.com/products/"^^ . . . . "https://ssbd.riken.jp/database/dataset/$1"^^ . . "http://sweetontology.net/stateRoleBiological/"^^ . . . . . "^EDI_\\d+$"^^ . "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes."^^ . "ontology" . . . "^\\d{7}$"^^ . . "earth sciences" . "Echinobase" . . . "dbpedia" . "barbara.magagna@umweltbundesamt.at" . "Laboratory of Systems Pharmacology Compound" . . . . . . . . . "small molecule" . . . . "false"^^ . "metascience" . . . "false"^^ . . . "Elizabeth Arnaud" . "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms."^^ . . . "^102?\\.\\d+\\/.+$"^^ . "0000004"^^ . . . . . "https://www.ribocentre.org/docs/"^^ . "genomics" . . . . "life science" . . . "http://bimerr.iot.linkeddata.es/def/key-performance-indicator#$1"^^ . . . . . "sustainability" . "http://thesauri.dainst.org/en/concepts/$1"^^ . . "^[A-Z0-9]{6,7}$"^^ . "pathway" . . "compound" . . _:N5542c72e7dd046fe8f07792954ecd209 . . . . "bmont" . . "Japan Registry of Clinical Trials" . . "An ontology transcription of definitions in the Functional Mock-up Interface (FMI) standard document from https://fmi-standard.org/ that enables representing Functional Mock-up Units (FMUs) in RDF"^^ . . "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID="^^ . . . . "number for the Lattes Platform entry on the person or group. Relationship between entry and subject must be supported by a source."^^ . . "An ontology to represent the enhancement of building data throughout the construction lifecycle stages"^^ . "protein" . . . . . . . . "MarDB" . "http://synbip.idrblab.net/data/sbp-target-complex/details/$1"^^ . "Space"^^ . . . . . "MRA-253"^^ . . "^[0-9a-z_:\\.-]+$"^^ . "expression" . . . . . . "C. elegans phenotype" . . "https://hdl.handle.net/hdl:20.500.12582/$1"^^ . . _:N8725aa8d24c4416584619feead58772a . . "architecture" . "^\\d{7}$"^^ . . "SWEET Ontology Human Commerce" . "https://www.genenames.org/data/gene-symbol-report/#!/symbol/$1"^^ . . "^\\d{7}$"^^ . "ontology" . . . "http://sweetontology.net/propSpaceLocation/$1"^^ . . "Description of Plant Viruses" . . . . . . "life science" . "experimentally determined" . "ENSG00000136147"^^ . . "nfdi4cat" . "http://genomics.senescence.info/genes/details.php?id=$1"^^ . "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code="^^ . "Ontology of Zebrafish Experimental Conditions"^^ . . . "German Federal Ministry of Education and Research Glossary" . . "^\\d+$"^^ . . . "npass" . . . "http://www.orpha.net/ORDO/Orphanet_"^^ . "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1"^^ . "https://www.cropontology.org" . . . "nbn" . . . . "coypu" . "ProjectOrStudyDesign"^^ . "chemistry" . "gene" . . . . "https://biomedit.ch/rdf/sphn-ontology/sphn#"^^ . "Acceptance"^^ . . . "sweet.sto" . _:N3508433b85d14bb18c9fd72f144130fa . _:N9b6bbc428eb54ed28a0a7b923b19f531 . . . "^\\d+$"^^ . . . . "alteration" . . "ontology" . "subject agnostic" . . "^\\d{7}$"^^ . "^\\w+$"^^ . . "Common Terminology Criteria for Adverse Events" . "derivatives%2Fthiocyclam%20hydrochloride"^^ . . . . "https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-"^^ . . "HeatPumpOperatingMode"^^ . "false"^^ . . . . "alzheimer's disease" . "https://web.expasy.org/cellosaurus/cellopub/$1"^^ . . . . . . "ontology" . "A study in the ChemBioSys data platform"^^ . "food" . . . . . . "pain medicine" . . . . "wdr" . . . . "_4dn.biosource" . "sdo" . "TDR" . . . . . "swisslipid" . "http://ddinter.scbdd.com/ddinter/interact/"^^ . "rtecs" . "developmental biology" . . "http://purl.bioontology.org/ontology/npo#NPO_$1"^^ . "http://purl.obolibrary.org/obo/MRO_$1"^^ . . . . . "immunology" . . . . . . "false"^^ . "false"^^ . . _:N4ac395c0b83344c881a8fc9e489c5d69 . "00011461"^^ . . . "https://www.kyinno.com/?s="^^ . . "translational medicine" . . . . . "silvio.peroni@unibo.it" . _:Nfcfb391896394356b4a5ef3fa798897b "oriental-cds@163.com" . . . . "https://units-of-measurement.org/$1"^^ . . . . "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier."^^ . . "sweet.stre" . . . . . . . "Absorption"^^ . . "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures."^^ . . "AnimalProduction"^^ . . "mzspec" . "fivestars" . . "New Zealand Threat Classification System" . . . . . "dna" . . . "3G6A5W338E"^^ . . . . . "proteomics" . "^GPM\\d+$"^^ . . "sequence" . "amphx" . "https://plantreactome.gramene.org/content/detail/"^^ . . . . . . . "https://fungidb.org/fungidb/app/record/gene/"^^ . . "https://www.hipsci.org/#/lines/$1"^^ . "Geographical Entity Ontology" . "IHW09326"^^ . . . . "sequencing assay" . "^[0-9a-f\\-]+$"^^ . . . . "false"^^ . "false"^^ . . "SWEET Ontology Phenomena Mixing" . . "Art and Architecture Thesaurus" . . . "https://w3id.org/kdsf-ffk/"^^ . . . . "nfdi4chem" . . . . "http://purl.obolibrary.org/obo/APOLLO_SV_"^^ . "FuncBase Mouse" . "NCIt" . "mcourtot@gmail.com" . . "false"^^ . "https://www.biolegend.com/Default.aspx?ID=6664&productid=$1"^^ . "subject" . . . . . "Metabolite and Tandem Mass Spectrometry Database" . . . . . "ontology" . . "license" . "GlycoMapsDB" . . . . "false"^^ . . . . . . . "small molecule" . "https://books.google.com/books?id="^^ . . . . "https://bioregistry.io/phosphopoint.protein:"^^ . . . . . "Anita Bandrowski" . . . . . "Contains identifiers for human small nucleolar RNAs (snoRNAs) from snoDB, an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources."^^ . "6819"^^ . . "^\\w+(\\.)?\\w+(\\.)?\\w+$"^^ . . "cell regeneration" . . "^MI\\d{7}$"^^ . "dbsnp" . "chembl" . "International repository of Adverse Outcome Pathways."^^ . "FaceBase Data Repository" . . _:N94176c25c9e04886b6059de74919d31f "kpetersen@who.int" . "3000887619"^^ . "pathway" . . . . . . . . . . . "https://massbank.jp/MassBank/RecordDisplay?id=$1"^^ . . . "general & upper" . "iot" . . "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1"^^ . "proteomics" . "SCV000151292"^^ . "genomics" . . "false"^^ . . "bakerc@unb.ca" . . . "angiology" . "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."^^ . . "chiro" . . "movie" . . . . "earth sciences" . . "ratmap" . . . "http://purl.bioontology.org/ontology/NDDF/$1"^^ . . "https://bioregistry.io/wikigenes:"^^ . . . . . . . "false"^^ . "https://www.merriam-webster.com/dictionary/"^^ . "mipmod" . "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1"^^ . "https://data.chembiosys.de/institutions/"^^ . . . "SEED Compound" . . "00030692-0FE1-4A1B-955E-A2E55D659267"^^ . "InfoSecSoS - Ontology for Information Security Management in Systems-of-Systems"^^ . . "life science" . "false"^^ . . "chemistry" . . "NMRShiftDB structure" . . "https://bioregistry.io/flybrain.ndb:"^^ . . "endocrinology" . "http://purl.obolibrary.org/obo/PAO_$1"^^ . "false"^^ . . . "life science" . . . "atmosphere wind mesoscale" . "genome" . . . . "embryo" . . . . . . . "http://scicrunch.org/resolver/SCR_$1"^^ . "tfclass" . . . . . "^[1-9]\\d*$"^^ . . . . "false"^^ . . "Metadata Management and distribution system for Multiple GNSS Networks" . . "pharmacogenomics" . . "fideo" . "JervenBolleman" . . "false"^^ . . . . . . "eukaryotic" . "life science" . . "MetaCyc" . "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?"^^ . . "false"^^ . "Teleost Anatomy Ontology" . . "true"^^ . . . "false"^^ . . . "sigmaaldrich" . "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used."^^ . "learning material" . . . . . _:N93b10efb82ee47a0a17f0ee9975c4cc2 . . . "hydrosphere body" . . . "^2\\d{4}$"^^ . . . . "Melissa Haendel" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Solid"^^ . . . "http://research.bmh.manchester.ac.uk/informall/allergenic-food/?FoodId=$1"^^ . . "http://purl.obolibrary.org/obo/BSPO_$1"^^ . "http://multicellds.org/MultiCellDB/$1"^^ . . . . . . . "polbase" . . . . . . . . "false"^^ . . . "Cotton ontology" . "http://www.case.edu/EpilepsyOntology.owl#"^^ . . . . "bigg.metabolite" . "Boiling"^^ . . . "http://sweetontology.net/reprMathFunctionOrthogonal/"^^ . . . . . "snoDB0001"^^ . . . . . . . . "false"^^ . . . . "pandura@mrc-lmb.cam.ac.uk" . "^TS-\\d{4}$"^^ . . . "http://purl.obolibrary.org/obo/MAT_"^^ . . . . "glida.gpcr" . . . "http://purl.obolibrary.org/obo/ICO_"^^ . . . . . . . . . . . . . "The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners."^^ . . "Dengue Fever Ontology" . . . . . . "03733596-c643-4c14-a7bc-3048591a3f2d"^^ . . "137"^^ . . . . . . "^\\d+$"^^ . . "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models."^^ . "false"^^ . "vertebrate" . . . . . . . . "Alice Allen" . "http://www.cathdb.info/cathnode/"^^ . . "has prefix" . . . "http://ktmfk.de/ontology/tribAIn/$1"^^ . . "small molecule" . . "phylogenetics" . . "representation data product" . . . . "gene" . "tim.vandermeersch@gmail.com" . "isced2013" . "1693"^^ . "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1"^^ . . . . . . . "AP00378"^^ . . "co_325" . "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo="^^ . "https://entomology.ca.uky.edu/content/"^^ . . . . . "shoshana@sickkids.ca" . . . "fair data spaces" . "XHTML Vocabulary" . "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"^^ . . . . . "BD1a05-A-A-IPM1"^^ . "identifier for a fungus taxon in Index Fungorum"^^ . . "cell biology" . "http://sweetontology.net/reprSpaceDirection/$1"^^ . . . . . . . . "false"^^ . _:Nf881a94613e640418e75d5432cca909d . . . . "959"^^ . "phenomena" . . . . . "Ambystoma Genetic Stock Center" . "michel.dumontier@gmail.com" . . . "clarin.concept" . . "comptox" . "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset."^^ . "SWEET Ontology Phenomena Fluid Instability" . _:N780330609fe6436483e6d655eea02c72 . "^D\\d+$"^^ . . "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html"^^ . "open educational resource" . "https://data.terra.bio/ga4gh/drs/v1/objects/"^^ . . "iev" . . . . . "BUNA790102"^^ . . "Domain Resource Application Ontology" . . "http://www.receptors.org/nucleardb/proteins/$1"^^ . "false"^^ . . "bibframe" . . "epidemiology" . "https://athena.ohdsi.org/search-terms/terms/$1"^^ . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes."^^ . . "20"^^ . . . . "http://purl.obolibrary.org/obo/$1_$2" . "https://w3id.org/oc/meta/$1"^^ . . "HoloFood sample" . . . "Terry Hayamizu" . . . "phenotype" . . . . . . . "http://purl.obolibrary.org/obo/ONE_"^^ . . . . . . . . "International Standard Classification of Education, 1997 Edition" . . "86"^^ . . "IPI00000001"^^ . . . . . . . . . . "false"^^ . . "https://ximbio.com/reagent/$1"^^ . . . "life cycle stage" . . . . . . . . . . . . . . . "DBrodbelt@RVC.AC.UK" . "KYinno cell lines" . "http://purl.obolibrary.org/obo/AERO_"^^ . "Vertebrate Homologous Organ Group Ontology" . _:N89910106572a48ae8cb1edb68af37b91 . "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1"^^ . . . "publishing" . . . . . _:N89910106572a48ae8cb1edb68af37b91 "khes@loc.gov" . . . . "^\\d{5}$"^^ . . . . "Buffer"^^ . "http://rdfs.org/sioc/access#"^^ . "simulation"^^ . "protein" . . "^[A-Za-z0-9]+$"^^ . . "^(\\w+)?\\d+$"^^ . . . . . . "funding bodies" . . "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations."^^ . . . "medicine" . . . "protein complexes" . "Dublin Core Types" . . "Semantically-Interlinked Online Communities Argumentation Ontology" . "transcriptomics" . "mlc" . . . . "false"^^ . "neXtProt family" . "Semantic Web for Earth and Environment Technology Ontology" . "cell lines" . "dna" . "false"^^ . "DSMZCellDive" . . . . . . . . . . "zebrafish" . . "prediction and recognition" . "https://bioschemas.org/profiles/"^^ . . "molecular entity" . . . . "false"^^ . . "American Type Culture Collection" . "https://www.uniprot.org/tissues/$1"^^ . . . . . "life science" . . "life sciences, biology" . "The Internet of Construction Ontology (IoC) construction process ontology is intended to represent a comprehensive solution of how processes in the construction industry can be modelled. Due to the iterative nature of creating an ontology, the construction process ontology presented here can at best be considered a working state at the time of publication. Our approach emphasizes the simplest and most comprehensive mapping possible, which is only extended based on insights from practical use when otherwise compelling limitations in usability and applicability arise. Thus, the extension and refinement of the developed construction process ontology strongly depends on the integration of further areas of the construction value chain and the connection of further domain ontologies."^^ . . . . . . . . . . . . . "genome" . "Jill P. Mesirov" . . . . "SWEET Ontology Representation Data Format" . "protein" . "vfb" . "https://civicdb.org/links/diseases/"^^ . "https://iso639-3.sil.org/code/$1"^^ . "animal husbandry" . . "Metabolomics Standards Initiative Ontology" . . . "false"^^ . . . "ontology" . . . . "serhii.nazarovets@gmail.com" . . . "false"^^ . . . . "life science" . "lncipedia" . . . "development" . . "LRMI Learning Resource Type Concept Scheme" . . . . "NFDI4Objects Collection" . "1000003"^^ . . . "http://vocab.getty.edu/ulan/$1"^^ . . "Allyson Lister" . "CQG5"^^ . "AccessModifier"^^ . . "The S/MAR transaction DataBase" . . "^[A-Za-z0-9\\-\\/]+$"^^ . . "http://purl.obolibrary.org/obo/FBdv_"^^ . . "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . . "economics" . "https://www.uniprot.org/database/$1"^^ . "http://sweetontology.net/realmGeol/$1"^^ . . "atmosphere pressure" . . . . . . . . . "The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML."^^ . "spike.map" . "heliosphere" . . . . . "structure" . "Media Types" . . . "http://sweetontology.net/propSpaceDirection/"^^ . . "DAML Periodic Table of the Elements" . . . "false"^^ . . . . "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1"^^ . . "culture" . . . . . . . "GPCR Natural Variants database" . . . . "https://rnacentral.org/rna/"^^ . . "^\\d+\\.\\d+$"^^ . "^\\d+$"^^ . "^MMP\\d+.\\d+$"^^ . . . . "This ontology defines classes and properties for describing participants, infrastructure, data and services of the International Data Spaces (formerly known as Industrial Data Space)."^^ . "0000449"^^ . "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf="^^ . "sweet.procc" . "The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references."^^ . "philip.stroemert@tib.eu" . "bioinformatics" . "agsc" . "false"^^ . "58"^^ . . . "CAPS-DB" . . . . . . . . . "bioinformatics" . . . . "false"^^ . "https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_"^^ . "^\\d{7}$"^^ . . "https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1"^^ . . . "jstor" . "pato" . "AffyProbeset" . . "FBbt_root" . "Quality"^^ . . "https://terminology.hl7.org/CodeSystem-v3-$1"^^ . . "Genomes Online Database" . . "rbk" . . . . . . . "https://doulix.com/constructs/$1"^^ . "d.djamalova@fz-juelich.de" . . "Fungal Nomenclature and Species Bank" . . . . . "Malaria Ontology" . . . "yetfasco" . "state role geographic" . "Web of Things Hypermedia Controls Ontology" . . . "Nonribosomal Peptides Database" . "28"^^ . . . "0"^^ . . . "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"^^ . . . . "http://purl.obolibrary.org/obo/CEPH_$1"^^ . "isni" . . . "http://sweetontology.net/phenAtmoLightning/"^^ . "ontology" . . "units" . . . "81d0ea69a9ab134f6ba68314e982171a367d3ab739c85c5ba49701dd02170ed3"^^ . . "representation scientific component" . . "http://unite.ut.ee/bl_forw.php?nimi="^^ . . . . "false"^^ . . "^D\\d+$"^^ . . "OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources."^^ . "United States Geological Survey - National Land Cover Database" . . . . . . "ontology" . . . "^MGYP\\d{12}$"^^ . . "https://biopragmatics.github.io/providers/sdis/"^^ . . . "bfo" . "^[0-9a-f\\-]+$"^^ . . "DEIMS-SDR (Dynamic Ecological Information Management System - Site and dataset registry) is an information management system powered by eLTER. It allows you to discover long-term ecosystem research sites around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR describes a wide range of sites, providing a wealth of information, including each site’s location, ecosystems, facilities, parameters measured and research themes. It is also possible to access a growing number of datasets and data products associated with the sites."^^ . . . "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html"^^ . . "csd" . "atmospheric weather" . . . . "tahe" . "http://purl.obolibrary.org/obo/NIF_CELL_$1"^^ . "cgd7_230"^^ . . "earth science" . . . "http://purl.obolibrary.org/obo/SBO_$1"^^ . "http://www.w3.org/ns/oa#"^^ . . . "Describes the time dimension of the data collection."^^ . . . . . "spd" . "Leszek Vincent" . "https://cmecscatalog.org/cmecs/classification/unit/$1.html"^^ . . . "life sciences" . "Wiktionary" . . "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO."^^ . . . . . . . . . "Raymond Lee" . "sorealv" . . "mgnify.analysis" . "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains."^^ . "Robert J. West" . . "https://cropontology.org/rdf/CO_357:"^^ . . . "Orthology Ontology" . . "false"^^ . "http://www.yeastract.com/view.php?existing=locus&orfname="^^ . . . "An ontology for modeling international trade flows."^^ . "knowledge representation" . . . . "00020134"^^ . . "This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts"^^ . . . . . "bioproject" . . "http://synbip.idrblab.net/data/sbp/details/"^^ . . . . . "J. Michael Cherry" . "4145692"^^ . . . "Intrinsically Disordered Proteins Ontology" . "electroencephalography" . . . . . "false"^^ . . . "Rafael Richards" . . . . . . . . "ontology" . . . "ontology and terminology" . . "SWEET Ontology Representation Mathematics Function Orthogonal" . . "false"^^ . . . "engineering" . . . "S1295"^^ . "pharmgkb.drug" . "Dialnet book ID" . "^\\d+$"^^ . . "biology" . . . . "Gramene Gene" . "plant phenotypes and traits" . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for BERD@NFDI" . . . "^\\d+$"^^ . . . . "^FC(HS|MM)_\\d+$"^^ . . "dna" . . . "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F"^^ . . "uniprot.journal" . . "The Darwin Core term degreeOfEstablishment provides information about degree to which an Organism survives, reproduces, and expands its range at the given place and time. The Degree of Establishment Controlled Vocabulary provides term that should be used as values for dwc:degreeOfEstablishment and dwciri:degreeOfEstablishment"^^ . "SPCC13B11.01"^^ . "StreptomeDB" . . . . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes."^^ . . "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts."^^ . "SWEET Ontology Relationships Scientific" . "Ligand Expo" . . "https://biopragmatics.github.io/providers/icepo/$1"^^ . . "https://www.metanetx.org/equa_info/$1"^^ . . "UM-BBD compound" . "pubmed" . "https://www.storedb.org/?STOREDB:DATASET"^^ . . . . . "Aftershock"^^ . . . . "false"^^ . . . . . "false"^^ . "OnlineJournal"^^ . . "fid baudigital" . "false"^^ . . . . . . "sophr" . "timrobertson100@gmail.com" . . "sweet.reaah" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle Material"^^ . . "imedvedeva@celgene.com" . "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students."^^ . "worfdb" . . "https://bioregistry.io/cst.pathway:"^^ . "representation time season" . . "biology" . . . "sorealc" . . . "soprocc" . . . . . . "vz" . "dna" . "^GN_[A-Za-z0-9_:]+$"^^ . . . . . . . "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns."^^ . "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."^^ . . "http://bimerr.iot.linkeddata.es/def/material-properties#"^^ . "COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems."^^ . . "false"^^ . "false"^^ . . . . . . . "rhea" . "Interdisziplinäre Forschungsfeldklassifikation" . "oct 2016"^^ . "http://purl.obolibrary.org/obo/ATO_"^^ . "biomedical science" . . . "false"^^ . . . "Ryan Brinkman" . "http://purl.org/ieee1872-owl/cora$1"^^ . . "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:"^^ . . "http://sweetontology.net/realmGeolContinental/$1"^^ . . "Physico-chemical process" . . . "life science" . . "snap" . "A"^^ . "aellenhicks@gmail.com" . "0000061"^^ . . . . . . "ontology" . . "protein" . "false"^^ . . . . . . . . "nfdi4cat" . . . . . "FBbi" . . . . . "Ramasubbu Sankararamakrishnan" . "ssbd.project" . . . . . . . . "http://modelseed.org/biochem/reactions/$1"^^ . "true"^^ . "A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis"^^ . . "https://proteinensemble.org/"^^ . . "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1"^^ . . "http://fossilworks.org/?a=taxonInfo&taxon_no=$1"^^ . "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:"^^ . "huang@southalabama.edu" . "biosample" . . . . . . "InChI" . . . "A database containing predicted viral miRNA candidate hairpins."^^ . . . "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1"^^ . "Rebecca Jackson" . . . . "https://glottolog.org/resource/languoid/id/"^^ . . . . "biomedical science" . "Conferences in EasyChair"^^ . "https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md"^^ . "Identifiers for microbially derived natural products that contains compound structures, producing organism taxonomy, biosynthetic and chemical properties."^^ . "Workflow"^^ . . "ontology" . "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . . "UDB000691"^^ . "Laia Subirats" . . "https://orcid.org/$1"^^ . . "life science" . "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . "ontology" . "openalex" . . . . . "hj@uestc.edu.cn" . "contributor roles" . . . "eggNOG" . "https://w3id.org/kim/isced-1997/level$1"^^ . . . "ogi" . . . . . . "chenyuzong@sz.tsinghua.edu.cn" . "false"^^ . . "^JCGG-STR\\d{6}$"^^ . . "false"^^ . . "https://rapdb.dna.affrc.go.jp/locus/?name="^^ . . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4DataScience" . . . . . . "https://www.metanetx.org/chem_info/"^^ . "ontology" . "NONHSAG00001"^^ . . . . . "chemical biology" . . . "digital humanities" . "gold standard" . "post-translational modification" . "sabiork.reaction" . "Identifiers for the binding targets of synthetic binding proteins (SBP), describing the specific molecules or complexes that SBPs interact with for their intended applications"^^ . "HBG004341"^^ . "12dgr161"^^ . "^bkc[0-9]*$"^^ . . . "glycomapsdb" . . "^\\d{7}$"^^ . . . "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information."^^ . "https://bioregistry.io/p3db.site:"^^ . "Basisklassifikation" . . . . "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1"^^ . "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks."^^ . . . "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers."^^ . "Dan Brickley" . . "CNP0171505"^^ . . "A collection of ontologies relevant for chemistry.\n\nThe NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.\n\nA further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." . . . . . . "0001707"^^ . . "ac" . . "umbbd.pathway" . "Oat ontology" . . . "cryosphere" . . "GND stands for \"Gemeinsame Normdatei\" (Integrated Authority File) and offers a broad range of elements to describe authorities. The GND originates from the German library community and aims to solve the name ambiguity problem in the library world."^^ . . . . . "ontology" . "An anatomical and developmental ontology for cephalopods"^^ . . "life science" . "funderregistry" . . . . . . . "gene" . . . "http://www.lipidmaps.org/data/LMSDRecord.php?LMID="^^ . . . "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date."^^ . . . . . . . . . . . . . . "false"^^ . "C. elegans Small Molecule Identifier Database" . "0000389"^^ . . . "Human Oral Microbiome Database" . "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1"^^ . . . . "cmedigue@genoscope.cns.fr" . . "00100005"^^ . . "https://eds.gene.le.ac.uk/home.php?select_db=$1"^^ . . "materials" . "760050"^^ . . . . . . . "https://www.linkedin.com/in/"^^ . "https://lotus.naturalproducts.net/compound/lotus_id/"^^ . . . "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments."^^ . "ontology" . "cl" . "http://www.bindingdb.org/rwd/entry/$1"^^ . . . . "vaccination" . "methylation" . . "https://dbpedia.org/ontology/$1"^^ . . . "school type" . . . "^(\\d+)|(\\w+)$"^^ . . "^RC\\d+$"^^ . "environmental science" . "biomedical science" . . "true"^^ . . . "true"^^ . "zenodo" . . . "https://www.kew.org/data/grasses-db/www/"^^ . . . . . . "Antibiotic Resistance Ontology" . . "environmental science" . . . . . . . . . . . . "http://viroligo.okstate.edu/main.php?vid=$1"^^ . . "ordb" . "false"^^ . . "seed" . . . . . . . . . . "http://purl.org/nemo/gufo#$1"^^ . . . "sam.griffiths-jones@manchester.ac.uk" . . . "anatomy" . . "PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment."^^ . . "experimental measurement" . . . "https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/$1"^^ . . . "^[A-Za-z 0-9]+$"^^ . . "omics" . . . "mesh.2013" . . . . "Molecule role (INOH Protein name/family name ontology)" . . . . "materials" . . . "Ensembl Bacteria" . "MESHD" . "Ontology of standardized units"^^ . "quality" . . "A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc."^^ . . . "space" . . . . "hospital" . "genome" . "realm" . "study design" . "false"^^ . . . . "pdb.ligand" . . "31"^^ . . . "saref.maritime" . . . . . . "^T\\d{8}$"^^ . "false"^^ . . . . . . . "MIKUZ25U"^^ . . "unipathway.reaction" . . . . . . . . . "food" . . . . . . "clinical studies" . "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata."^^ . "http://purl.org/gc/"^^ . "http://purl.obolibrary.org/obo/EMAP_"^^ . . . "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database."^^ . . "Jason E. Stajich" . . "^\\d{11}$"^^ . . . . "false"^^ . . . . "animal" . . "proteomics" . . . . . "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015"^^ . "^\\d{7}$"^^ . . . "mass spectrometry" . . . . "sweet.phr" . . . . . . . "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID="^^ . "01a"^^ . "http://ddinter.scbdd.com/ddinter/interact/$1"^^ . . . . . "clinical veterinary medicine" . _:Na47c38a9ea6f404ba7e0892884ae279e "helpdesk@cropontology-curationtool.org" . . "https://www.pgscatalog.org/pgs/"^^ . . "Ontology of rat strains"^^ . . "^\\d{7}$"^^ . . . . . . . . . . . . . "DRKS00031815"^^ . . "^DP\\d{5}r\\d{3}$"^^ . . . . . "Horizon Discovery cell line collection" . "false"^^ . . . . . "http://sweetontology.net/stateThermodynamic/$1"^^ . . "fid move" . . . . . . . . . _:N408a2ca0b65c42119f41bd250f717e87 "FALDO group" . "eagle-i resource ontology" . "International Classification of Diseases, 10th Revision" . . . . . . . "^\\d+$"^^ . . . . . . "baum@zbmed.de" . "john.garavelli@ebi.ac.uk" . . . . . . "Cellosaurus Registry" . . "Stefanie Seltmann" . "^\\d+$"^^ . "bioinformatics" . . . . "BugBase Protocol" . "http://sweetontology.net/realmGeolConstituent/"^^ . "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea."^^ . "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n"^^ . . . "false"^^ . "structure" . . "ardan@ebi.ac.uk" . . "Joy Owango" . "ID in osf.io"^^ . . . "omics" . . "https://data.chembiosys.de/data_files/"^^ . . . . "Virus Pathogen Resource" . "0001079"^^ . "api" . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information."^^ . . "ontoneo" . . "^\\d+$"^^ . "Human Cell Atlas Ontology" . "http://bimerr.iot.linkeddata.es/def/material-properties#$1"^^ . . . "AtmosphericBoundaryLayer"^^ . . . . "https://www.re3data.org/repository/$1" . . "491187"^^ . . . . "^\\d+$"^^ . "The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure."^^ . "https://suprabank.org/molecules/"^^ . . "A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada."^^ . . . "chris@sanderlab.org" . "person" . . . . "disease" . "SWEET Ontology Property Diffusivity" . . . . . "A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum."^^ . . "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$"^^ . . . . . . "^[A-Za-z0-9-]+$"^^ . "cryopreserved" . "false"^^ . "https://sorgerlab.github.io/famplex/$1"^^ . "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN="^^ . . . "^\\d{7}$"^^ . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Data Processing"^^ . "^SIGNOR-\\d+$"^^ . . . "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]"^^ . "gmd.analyte" . . "^\\d+$"^^ . . . . "false"^^ . "sostf" . "^\\d{6}$"^^ . "molecular biology" . . "Rebuilding a Kidney" . . . "structural biology" . . . . "life science" . "^(conceptualization|data-curation|formal-analysis|funding-acquisition|investigation|methodology|project-administration|resources|software|supervision|validation|visualization|writing-original-draft|writing-review-editing)$"^^ . . . . . . . . . . "http://purl.obolibrary.org/obo/CLYH_$1"^^ . "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"^^ . . . . . . . . . . "Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)"^^ . . "utrdb" . . . . . . . . "has_service"^^ . . "MIRBASE_FAMILY" . . "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively."^^ . "geography" . . . . "https://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_"^^ . . . . . . "http://sweetontology.net/phenGeolGeomorphology/"^^ . . "https://www.findacode.com/code.php?set=ICD10PCS&c="^^ . "Iranian Registry of Clinical Trials" . . . . . "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins."^^ . . "262393"^^ . "An institution in the ChemBioSys data platform"^^ . . . . "http://sabiork.h-its.org/newSearch?q="^^ . . . "LOTUS Initiative for Open Natural Products Research" . . . "identifier for a physical constant"^^ . . . "medicinal chemistry" . . . . . "miRBase Families" . "dna" . "240-17-488-3-4-12"^^ . . . "FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge."^^ . . . . . "Mark Jensen" . . . "false"^^ . "http://sweetontology.net/phenAtmoCloud/$1"^^ . . _:Nadb8191f5e544e8bb19138a4f3728392 . . . "PSEEN0001"^^ . . . . . . . . . . . "tag"^^ . . . . "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies."^^ . "metagenomics" . "These resources represent software repositories" . . . "^[A-Z]-[0-9A-Z]{3}-[0-9A-Z]{3}$"^^ . . . . . "pfbaldi@uci.edu" . . "National Center for Advancing Translation Sciences BioPlanet" . "This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports."^^ . . . . . . "Characteristic"^^ . . . "http://purl.obolibrary.org/obo/RXNO_$1"^^ . "Angela Kranz" . . . "http://sweetontology.net/phenReaction/"^^ . "Work"^^ . . . _:Ne1875a74584f44699e0c64bef058741f "Pat Brooks" . "obo" . "contributor roles" . . "AgentIdentifierScheme"^^ . . "349124"^^ . . "PDB Structure" . _:Nc66f2f6eaa6e4a5985c13857fc589cd4 . "Ensembl Protists" . . . . "https://idr.openmicroscopy.org/search/?query=Name:idr$1"^^ . . . "SWEET Ontology Realm Landform" . . . . . . . . . . "false"^^ . . . . . "false"^^ . . . "SWEET Ontology Phenomena Cryosphere" . . . . . "life science" . "https://web.archive.org/web/1/https://www.semion.io/Author/"^^ . . . "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available."^^ . . . "false"^^ . . . "sed-ml.level-1.version-1"^^ . . . . "^\\w+_COVID19_[-\\w]+$"^^ . "scomp" . . . "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."^^ . . . _:N369c564aef2d426c94fbec31e9765487 "johardi@stanford.edu" . "environmental assessment" . "ECGOntology" . . . . . . "UniProt Proteomes" . . . "false"^^ . . . "^\\d{7}$"^^ . . . "Robert Hoehndorf" . . . "envo" . "genes" . "ALA"^^ . . "taxonomic classification" . . "http://sugarbind.expasy.org/"^^ . . "bcio" . . . . . . . "http://purl.obolibrary.org/obo/CDAO_"^^ . . . . . "false"^^ . . . . "https://www.ncbi.nlm.nih.gov/biosystems/$1"^^ . . "immunology" . . "^PIRSF\\d{6}$"^^ . "688"^^ . . . . . . "hammer"^^ . . . . "https://drugs.ncats.io/drug/"^^ . . "^RBR-\\w+$"^^ . . . "sweet.reagb" . . . "https://rnaloops.cs.put.poznan.pl/search/details/$1"^^ . . "http://purl.obolibrary.org/obo/PLANA_"^^ . . . "dna" . "tib" . . . . . . "google.book" . "transportation planning" . . . "did" . "false"^^ . . "faseb list" . . "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data."^^ . . . . . . . . "^\\d+$"^^ . "ClassyFire" . . . . . . . . "NIF Standard Ontology: Qualities" . . . "max@soe.ucsc.edu" . "Fungal Growth Database" . . "https://www.cabi.org/cabebooks/ebook/"^^ . . . "https://terminology.fraunhofer.de/voc/bau#"^^ . "An issue on the Information Artifact Ontology GitHub issue tracker"^^ . . . "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . . . "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1"^^ . . . . "regulation" . "false"^^ . . "https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_$1"^^ . . "^LSM-\\d+$"^^ . . . "1200"^^ . "genetic polymorphism" . . . "dna" . . . "sweet.reaofe" . . . . . "SDY2614"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Physical"^^ . "https://www.inaturalist.org/taxa/$1"^^ . . . "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . . . "false"^^ . . . . "https://cells.ebisc.org/$1"^^ . . "AlignmentObject"^^ . "A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data."^^ . . "bibliography" . . . "International Standard Classification of Education, 2011 Edition" . . . . . . "http://europepmc.org/articles/$1"^^ . . "http://www.genomesize.com/result_species.php?id="^^ . "http://purl.obolibrary.org/obo/MIRNAO_"^^ . . . "health science" . "anatomy" . "^\\d+$"^^ . . "fabio" . . . . "educational resources" . "http://purl.obolibrary.org/obo/APO_"^^ . "false"^^ . . "http://purl.obolibrary.org/obo/MOBIO_"^^ . "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases."^^ . . "nfdi4chem" . . . . . . . . "curricula" . . . "Vaccine Ontology" . . . . . . . . . . "http://purl.org/vocab/frbr/core#"^^ . . . . . "^\\d+$"^^ . "energy engineering" . . . "rgap" . "aphidbase.transcript" . "http://sweetontology.net/propCharge/"^^ . . . . . "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/"^^ . "046-19"^^ . . . . "^\\d+\\.\\d+$"^^ . . "false"^^ . "^\\d+$"^^ . "832"^^ . . . . "SWEET Ontology Material Equipment" . "http://vegbank.org/cite/"^^ . "SNHG3"^^ . . . . . . "^N[0-9]{10}$"^^ . "http://fossilworks.org/?a=taxonInfo&taxon_no="^^ . . . "botany" . . . . . "SWEET Ontology State" . . "rdf" . "^\\d+$"^^ . "http://erop.inbi.ras.ru/result2.php?PepName="^^ . "https://trialsearch.who.int/Trial2.aspx?TrialID=$1"^^ . "http://ecoinformatics.org/oboe/oboe.1.2/oboe-standards.owl"^^ . . "KG09531"^^ . . "http://scop.berkeley.edu/sunid="^^ . . . "protein" . . . . "life science" . . . . . "false"^^ . . "https://togoid.dbcls.jp/#"^^ . . . . . "false"^^ . _:Ndd2c985480434017bb56876ef0717497 "data@food.gov.uk" . "openWEMI Vocabulary" . . . . "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process."^^ . "Kristian Axelsen" . . "http://purl.obolibrary.org/obo/GECKO_"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Chemical"^^ . . . . "events" . "^DB-\\d{4}$"^^ . . . "biomedical science" . . . . "6472"^^ . "The Natural Products Atlas" . "spp" . "life sciences, biology" . . "bioresource" . . . . "^\\d{7}$"^^ . "structural biology" . "57-27-2"^^ . . "Francisca Vazquez" . "https://bartoc.org/en/node/"^^ . . "https://disprot.org/"^^ . "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1"^^ . . . "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy."^^ . . "pubchem.substance" . . "false"^^ . . . "https://www.uniprot.org/arba/$1"^^ . . "phenotype" . "neuroimaging measurement" . "false"^^ . "Numeric"^^ . . "w3c rec" . "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.[nB]\\d{1,3}|\\.-\\.-\\.-|\\.\\d{1,3}\\.-\\.-|\\.\\d{1,3}\\.\\d{1,3}\\.-)?$"^^ . "http://www.ncbi.nlm.nih.gov/clinvar/$1"^^ . . . . . "sperm" . . "foaf" . . . "biomedical science" . . . "Molecular Design Limited Hash" . "http://purl.org/iot/ontology/fiesta-iot#"^^ . "^(MAM\\d{5}\\w)|(MAR\\d{5})$"^^ . "data science" . . . . . "false"^^ . "obo" . . . . . "ontology" . . "david.lynn@flinders.edu.au" . . . . . . "https://w3id.org/kim/isced-1997/level"^^ . . "^[0-9]+$"^^ . . "soreaah" . . . "datanator.gene" . "Type of Frequency" . "http://purl.obolibrary.org/obo/REX_"^^ . . . "ontology" . . . . "^\\d+$"^^ . . . "https://coicatalogue.uc.pt/index.php?t=specimen&COINumber=$1"^^ . . . "ASRP1423"^^ . . "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life."^^ . . . "deoxyribonucleic acid" . . . "https://w3id.org/tso#"^^ . "nif.dysfunction" . "The prefixes appearing in this collection correspond resources whose entities could appear as values for target groups, media types, educational levels, and other fields in OER data models. It can also include parts that are used to construct schemas for OERs\n\nIt was originally curated as part of the publication [_Teaching RDM in a smart advanced inorganic lab course and its provision in the DALIA platform_ (arxiv:2509.18902)](https://arxiv.org/pdf/2509.18902)." . "https://www.kegg.jp/entry/"^^ . . . "^\\d+$"^^ . . "FlyBase" . . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/"^^ . . . . "OpenADR ontology" . . . "Soybean Trait Dictionary in template v5 - IITA - July 2015"^^ . . "Giorgio Ascoli" . . . "false"^^ . . . "false"^^ . "https://www.storedb.org/store_v3/study.jsp?studyId=$1"^^ . "molecule" . . . . "obstetrics" . "F0001"^^ . "registry" . "false"^^ . "TogoID Ontology" . . "phylogeny" . "chemical biology" . "EndlessForms Studio Image" . . . . . "MESHCS" . "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored."^^ . . . "omia.variant" . "Spider Ontology" . . . . . "false"^^ . "Cell line collections (Providers)"^^ . . "mondo.issue" . . . "An ontology of commonly encountered and/or high level Drosophila phenotypes."^^ . . "Roger Hyam" . . . "0116"^^ . . "false"^^ . . "brazma@ebi.ac.uk" . . . "disease" . . . . . "2023"^^ . _:Nbfdaa2884ca44242baf4ce0b3593ff2b "Evangelos Katis" . . . . . . . . . . "virology" . . . "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol="^^ . . . "^\\d{4}$"^^ . "http://sweetontology.net/realmLandOrographic/$1"^^ . . . "https://cellxgene.cziscience.com/collections/"^^ . . "false"^^ . "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$"^^ . "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID="^^ . "W2741809807"^^ . . . . "life science" . . . . . _:N01b52b5dd5c74a29a3d23bb762945972 "edd@usefulinc.com" . . . . . . "^A\\d{6}$"^^ . . . "^\\d+$"^^ . "life science" . "obo" . "4PointResistanceSetup"^^ . "ontology" . "https://chemkg.github.io/chemrof/"^^ . "^\\d{7}$"^^ . . . . . "epo" . "immunology" . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Geographic"^^ . "false"^^ . "enzymology" . . . "Genitourinary Development Molecular Anatomy Project" . . . . . . . . "https://vocabularies.cessda.eu/vocabulary/Variables-Relations?lang=en#code_"^^ . . . "geonames.feature" . "human" . . . "AutomationSystem"^^ . "https://vocabularies.cessda.eu/vocabulary/CdcPublisherNames?lang=en#code_$1"^^ . "http://sweetontology.net/propConductivity/$1"^^ . "coypu" . "sébastien Aubourg" . . "pypi" . "ChemDB" . . "protein" . . "AgroPortal" . . "false"^^ . . . . . . "http://antibodyregistry.org/AB_"^^ . . . "https://civicdb.org/links/sources/"^^ . . . "^\\d+$"^^ . . . "http://sweetontology.net/reprSpace/"^^ . "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . . . . "https://bioregistry.io/metaregistry/ncbi/$1"^^ . "false"^^ . "hemonc" . "http://sweetontology.net/stateRealm/"^^ . . "1kfv"^^ . "vitro" . "95-0166C6"^^ . . . . . "false"^^ . . _:Ndd1278daca154152afd75b3c30db2337 "Terue Takatsuki" . "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1"^^ . "physical chemistry" . . "dietary restriction" . . . "Study inside StoreDB at University of Cambridge"^^ . . . . . "protein" . "https://vocabularies.cessda.eu/vocabulary/rexgroups?lang=en#code_"^^ . "horticulture" . "https://bbp.epfl.ch/nexus/web/studios/public/"^^ . . . . . "456789"^^ . . . "semantic web" . . "Aggregation Method" . . . . . "AClass"^^ . "Type of Address" . . "SWEET Ontology Material Water" . . "0000071"^^ . "false"^^ . . . . "geologic orogen" . . "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data."^^ . . "Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera."^^ . "pathogen" . . "European Collection of Authenticated Cell Culture" . . "anatomy" . . . "^(([0-9][0-9]?|[0-9]{3}(-[0-9]{3})?|[0-9]{3}(-[0-9]{3}(:[0-9]+)?)?|[0-9]{3}\\.[0-9]+(-[0-9]{3}\\.[0-9]+(:[0-9]+)?)?|T[1-9][A-Z]?--[0-9]+(-T[1-9][A-Z]?--[0-9]+(:[0-9]+)?)?|[1-9][A-Z]?--[0-9]+(-[1-9][A-Z]?--[0-9]+(:[0-9]+)?)?)?)$"^^ . . . . "Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database. The compilation of codon usage is synchronized with each major release of GenBank."^^ . "https://www.ncbi.nlm.nih.gov/biosystems/"^^ . . . . "Controlled vocabulary for the classification of the theme for a mobility dataset."^^ . "ontology" . "5013"^^ . . . "https://www.internationalgenome.org/data-portal/sample/$1"^^ . . . . . . . . . "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . "YeTFasCo" . . "^ENSG\\d{11}$"^^ . "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information."^^ . . "chemistry" . . . . . "MagnitudeValueType"^^ . . . "National Uniform Claim Committee Characteristic" . . "ontology" . "375364"^^ . . . "centrally registered identifier" . . . "75121530"^^ . "genomics" . . . . "^SAMEA\\d{8}$"^^ . . . "life science" . . . . . . "http://sweetontology.net/relaProvenance/$1"^^ . "Type of Concept Group" . . . . "Marc Ciriello" . . "isanchez@cnb.csic.es" . "expression" . "genetics" . . . . . . . "^C\\d+$"^^ . "VirOligo" . . "pdbechem" . . "Database of homology-derived secondary structure of proteins" . "icf" . . . "S1"^^ . . "The Crystallographic Defect Core Ontology (CDCO) defines the common terminology shared across all types of crystallographic defects, providing a unified framework for data integration in materials science."^^ . . "tribain" . "pmid" . . "ontology" . . . "Anticyclone"^^ . . . . "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies"^^ . . "http://rdfs.org/sioc/swan#"^^ . "vendor" . . . "soil science" . . . "wos.work" . "representation space direction" . . "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage."^^ . . "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1"^^ . . . . "cohesin" . . . "false"^^ . "enzyme" . . . . . . . "obo" . "The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included."^^ . . "propreo" . "1200031"^^ . "^\\d+$"^^ . "We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)"^^ . . . . . . . . . "https://foodb.ca/foods/$1"^^ . . . . . . "subject agnostic" . "http://uri.neuinfo.org/nif/nifstd/nlx_dys_"^^ . "https://s3.us-east-2.amazonaws.com/lg.cede/$1"^^ . . "An ontology to describe legislation, based on the FRBR model, that encodes the ELI metadata fields."^^ . "brenda.ligand" . . . "^[-_0-9A-Za-z]{12}$"^^ . . "nfdi4cat" . . . . . . "Close to 5K Categorizations for drugs, similar to ATCC."^^ . . "http://www.signaling-gateway.org/molecule/query?afcsid="^^ . . . . . "http://www.informatics.jax.org/accession/MGI:"^^ . "AlphaParticle"^^ . "https://aopwiki.org/relationships/$1"^^ . . . . "http://modelseed.org/biochem/compounds/$1"^^ . "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites."^^ . . "food" . "Central concepts of R|EX research" . "DataCite to DCAT-AP Mapping" . "https://flybase.org/reports/"^^ . . "Arun Prasad Pandurangan" . . . . . "flowrepository" . "https://www.ebi.ac.uk/metagenomics/analyses/"^^ . . . . . . . "mhucka@caltech.edu" . "^[1-9]\\d*$"^^ . . . "false"^^ . . . . . . "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID="^^ . . . . "The PMD Core Ontology (PMDco) is a comprehensive framework for representing knowledge that encompasses fundamental concepts from the domains of materials science and engineering (MSE). The PMDco has been designed as a mid-level ontology to establish a connection between specific MSE application ontologies and the domain neutral concepts found in established top-level ontologies. The primary goal of the PMDco is to promote interoperability between diverse domains. PMDco's class structure is both understandable and extensible, making it an efficient tool for organizing MSE knowledge. It serves as a semantic intermediate layer that unifies MSE knowledge representations, enabling data and metadata to be systematically integrated on key terms within the MSE domain. With PMDco, it is possible to seamlessly trace data generation. By building on this foundation, PMDco facilitates the integration of data from various sources and the creation of complex workflows. In summary, PMDco is a valuable tool for researchers and practitioners in the MSE domains. It provides a common language for representing and sharing knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless traceability of data generation. Overall, PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain. PMDco at GitHub: https://github.com/materialdigital/core-ontology Documentation: https://materialdigital.github.io/core-ontology/docs/"^^ . "MSBNK-IPB_Halle-PB000166"^^ . . "FHIR External Terminologies" . . . "http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#$1"^^ . "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id="^^ . . "tib.mat" . "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine."^^ . "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . . . "1000000"^^ . . . . "embryonic stem cell" . "SAMEA10104908"^^ . . . . . . "http://purl.obolibrary.org/obo/FYPO_"^^ . . "chempro.probe" . . . . "oba" . "^\\d+$"^^ . . . . "http://nava.liacs.nl/cgi-bin/nava.py?id="^^ . . . "saref.lift" . "Pocketome" . . . "vac" . . . "Sequence types and features ontology" . . . . . . "http://www.hmdb.ca/metabolites/"^^ . "torsten.schwede@unibas.ch" . . . . "classification" . . . "http://purl.obolibrary.org/obo/DUO_"^^ . "https://w3id.org/kim/hcrt/"^^ . "true"^^ . "tobias.schulze@ufz.de" . . "false"^^ . "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1"^^ . "false"^^ . "genome" . . "United States Department of Agriculture Veterinary Biological Product Code Number" . . . . "http://sweetontology.net/propSpaceHeight/"^^ . "bel" . . . "Drug Target Ontology" . "0001114"^^ . . . . . "^\\d{7}$"^^ . . . . . "zfin" . . "A public place to process, interpret and share GC/MS metabolomics datasets."^^ . "MSMEG_3769"^^ . "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings."^^ . . . . "genomics" . "https://datalab.rwth-aachen.de/MINDER/resource/$1"^^ . . . . "https://tetrahymena.vet.cornell.edu/display.php?stockid=$1"^^ . . "LSM-6306"^^ . . "http://purl.org/pav/$1"^^ . . . "Human Pluripotent Stem Cell Registry" . . . "learning resource" . "https://istransbase.scbdd.com/database/trans/"^^ . . "Inge Jonassen" . "A typology of sampling methods."^^ . . "Human Protein Atlas tissue profile information" . . . . "^\\d+$"^^ . . . "PhenX Toolkit" . . . "https://www.uniprot.org/keywords/"^^ . . "Agronomy Vocabulary" . . . . . . "david.sehnal@gmail.com" . "SysBioCancer2022"^^ . "text mining" . . "health science" . . "ATCC" . "Todd W Harris" . . "electronic health record" . . . . . "false"^^ . . . . . "https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code=$1"^^ . . "^M\\d{5}$"^^ . . . . . . "^\\d{4,6}$"^^ . . "ensembl.protist" . . . "cessda.cdcpublishernames" . . "RC00001"^^ . . "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. "^^ . . "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+"^^ . . . . . . . . . "mimodb" . . . "http://www.wikigenes.org/e/gene/e/$1.html"^^ . . . "life science" . "^[0-9]+$"^^ . "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools."^^ . "interaction" . "ecao" . . "geographic location" . "molecule" . . "CustomsUnion"^^ . "051"^^ . "adcad" . "biomedical science" . . . . . . "sweet.mamic" . "https://www.ncbi.nlm.nih.gov/gene/$1/ortholog"^^ . . . . . . . . . . . "http://rdfs.org/sioc/argument#"^^ . "Emotion Ontology" . . _:Ne27213cf4968459eaf935e16ddcb056a "SEP developers via the PSI and MSI mailing lists" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Boundary Layer"^^ . . . . . . "sweet.phpc" . . . "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes."^^ . . "PharmacoDB Datasets" . . . . "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition."^^ . . . "false"^^ . "https://schema.coypu.org/em-dat#$1"^^ . "false"^^ . "false"^^ . . . . . . "biomedical science" . . "ascl" . . "phenotype" . . . . . "surjeet.arya@uky.edu" . "false"^^ . . . "proglyc" . . . . . "^\\d{7}$"^^ . . . "chemistry" . "false"^^ . . . "false"^^ . . "gmd.gcms" . . "^\\d{7}$"^^ . . . "protein" . . . . "pancreatic islet function" . "ess" . "subtilist" . . . . . "https://osdr.nasa.gov/bio/repo/data/studies/"^^ . . "Human Chromosome Ontology" . "UniGene" . "Key Performance Indicator ontology" . "false"^^ . . "00007294"^^ . "subject" . . . . . "false"^^ . . "http://www.w3.org/ns/org#"^^ . "metabolites" . . "obo" . . "UniProt Post-Translational Modification" . "KEGG Disease" . . "material science" . . "nddf" . . "sweet.phatmoc" . "glycomics" . . "interaction" . "statistics" . "https://bioregistry.io/lipidbank:"^^ . "https://www.ncbi.nlm.nih.gov/books/$1"^^ . "BT20_BREAST"^^ . "http://www.drugtargetontology.org/dto/DTO_"^^ . . . "General Multilingual Environmental Thesaurus Concept" . "false"^^ . "Simon Jupp" . "sweet" . . "euclinicaltrials" . "^\\d{7}$"^^ . "https://w3id.org/kim/educationalLevel/level_$1"^^ . "^HGVPM\\d+$"^^ . "Destatis subject classification" . "ListDB Ontology" . . "material science" . . . . . . . "The Integrated Chemical Environment (ICE) provides high-quality curated data and appropriate tools to support development and evaluation of new, revised, and alternative methods. ICE provides free online access to curated in vivo and in vitro test data, in silico toxicity predictions and chemical property data, reference chemical lists, and computational tools for chemical characterization and predicting toxicity.\nICE supports the following: (i) Data integration: brings together available data, including data on formulations; (ii) Results exploration: enables dynamic, graphical exploration with publication-quality graphics; (iii) Data analysis: allows characterization of data using online workflows, and (iv) FAIR data access: data are findable, accessible, interoperable, and reusable."^^ . . . . . "http://sweetontology.net/phenAtmoPrecipitation/$1"^^ . "^\\d+$"^^ . "Tobias Schulze" . "obo" . . . . . . . . . . . . . _:Nf7146456589947a6a638c937c6a09604 "Bgee team" . "https://www.rhea-db.org/rhea/$1"^^ . . "https://go.drugbank.com/indications/"^^ . "^\\d{7}$"^^ . "GCF_000001405"^^ . "Health Data Research Innovation Gateway" . . . . "^RID\\d+$"^^ . . . . . . . . . . . . . . . . . "sequence feature" . "http://sweetontology.net/humanTransportation/$1"^^ . . "protein" . "0000000"^^ . . "http://solgenomics.net/phenome/locus_display.pl?locus_id="^^ . "Ontology for manufacturing and logistics"^^ . "false"^^ . . . "false"^^ . . "catalogs" . "kegg.brite" . "Frederique Lisacek" . . . "genetics" . "Rat Genome Database RatMap" . . "nfdi4ing" . "protein" . "Human Brain Atlas" . . "eaglei" . . . . . . . . . "https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary"^^ . "physiology" . . "VCell Published Models" . "re3data" . . . . "Bibliographic Reference Ontology" . . "false"^^ . "morphology" . . . . "gene" . "http://purl.obolibrary.org/obo/UPHENO_"^^ . "http://sweetontology.net/propTemperature/$1"^^ . . "http://uri.neuinfo.org/nif/nifstd/oen_$1"^^ . . . . "dashr.rna" . "^\\d{7}$"^^ . . . . . . . "Standards Ontology" . "false"^^ . "^[A-Za-z0-9_]+$"^^ . "https://www.nwo.nl/en/projects/$1"^^ . . . . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . . "SWEET Ontology Material Element" . . . . . "true"^^ . "Pathway Commons" . . . "anatomy" . . "http://www.kegg.jp/entry/$1"^^ . . "OECD Harmonised Templates" . "ovarian" . "phenomena" . "The InformAll database was developed to provide a credible source of information on allergenic food materials of both plant and animal origin."^^ . . . "Global Proteome Machine Database" . "false"^^ . "protein" . . "2196"^^ . "material science" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Direction"^^ . . . . . . . . . . . . . "soreaaw" . . "life science" . "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept"^^ . "business administration" . "https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"^^ . "The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/)."^^ . "ontology" . "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee."^^ . . . "An ontology encoding software based on the Intelligent Information Request and Delivery (iiRDS) standard"^^ . "industry" . . . . . . . "Identifiers correspond to curated and proteomics-inferred associations between protein post-translational modifications (PTM) and drug sensitivity."^^ . . . . . "biomedical science" . . "Neil McKenna" . . . "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information."^^ . . . "gene" . . . . . "biotools" . "Identifiers for subjects of experiments that investigate biological and health responses of terrestrial life to spaceflight"^^ . . "^ZDB\\-\\w+\\-\\d+\\-\\d+$"^^ . "minid" . "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."^^ . "^\\d{3}\\w(\\w|\\d_)\\d{4}X$"^^ . "p.buttigieg@gmail.com" . "GESIS Knowledge Graph Schema" . . . . . . "hydrosphere" . . "MobiDB" . . . "https://bioregistry.io/linguist.gold:"^^ . . "http://darcsite.genzentrum.lmu.de/darc/view.php?id="^^ . . "false"^^ . . . . . . . . "SWEET Ontology Property Dimensionless Ratio" . . . . . . . "false"^^ . . . "A Product Code Number (PCN) assigned by the Animal and Plant Health Inspection Service (APHIS)'s Center for Veterinary Biologics (CVB) to veterinary biological products such as vaccines, bacterins, antibodies, diagnostic products, antitoxins, bacterin-toxoids, and toxioids approved for veterinary use by the United States Department of Agriculture Veterinary (USDA). A quarterly release, as PDF, can be found [here](https://www.aphis.usda.gov/sites/default/files/currentprodcodebook.pdf).\n\n The PDF document states (verbatim): The alphanumeric system used for product codes provides for a six-digit number of number-letter combination to be assigned to each product, i.e., the first digit denotes product types; second and third, group by agents; fourth, the viability of vaccine, (live, killed, modified live, etc.); fifth, substrates; and sixth, miscellaneous variables"^^ . . . . "false"^^ . "dna" . "BioTop" . "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database."^^ . . . "false"^^ . . . "Human Plasma Membrane Receptome Families" . "REPRODUCE-ME Ontology" . . . . . "https://hamap.expasy.org/unirule/$1"^^ . . "Publisher Item Identifier" . . . "Carrine Blank" . "obo" . "Mastodon" . . "TarBase" . "false"^^ . "false"^^ . "http://www-snorna.biotoul.fr/plus.php?id="^^ . . . . . . "false"^^ . "13"^^ . . . . "IID00001"^^ . "http://purl.obolibrary.org/obo/MPATH_$1"^^ . . . "zinc" . . "obo" . . "pdbj" . . . . . "http://www.allergome.org/script/dettaglio.php?id_molecule=$1"^^ . . "fbql" . . "European Science Vocabulary" . . . . . "https://nfdi.fiz-karlsruhe.de/ontology/NFDI_"^^ . . . "This website supports the undertaking and oversight of clinical trials in the European Union (EU) and European Economic Area (EEA). It is part of a broad initiative to transform the EU/EEA clinical trials environment in support of large clinical trials in multiple European countries, to the benefit of medical innovation and patients. (from homepage)"^^ . . . . . . . . . . "small molecules" . . "992"^^ . . "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder."^^ . "https://www.encodeproject.org/"^^ . . . . . . . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Continental"^^ . . "Ontology of Vaccine Adverse Events" . "https://w3id.org/okn/o/sd#"^^ . . . "loinc" . . "1"^^ . "false"^^ . "Coronavirus Infectious Disease Ontology" . . . . . . . . "BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research."^^ . . . . "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"^^ . "Basic Register of Thesauri, Ontologies & Classifications" . "^\\d+$"^^ . _:N65aa54a1b34f467d862f849c8f2fec01 . "sweet.repsmo" . . . . "^[1-9]\\d{0,6}$"^^ . "false"^^ . . . . . "0000001"^^ . . "true"^^ . . . "ccdc" . "PhosphoPoint Kinase" . . "phenotype" . . "https://www.mycobank.org/page/Name%20details%20page/"^^ . . . "endlessforms.unit" . "lotus" . "LRMI Interact Type Vocabulary" . . "gorel" . "http://bigg.ucsd.edu/models/universal/metabolites/$1"^^ . "Jennifer L Harrow" . "http://purl.obolibrary.org/obo/SWO_$1"^^ . "http://purl.obolibrary.org/obo/FLOPO_"^^ . . . "https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/"^^ . . . . . "ae8c77fe-e6c8-44d5-8265-4a38c637bbef"^^ . . . . "hospital" . "Feature Type Thesaurus" . "true"^^ . . "kaken" . "cienciavitae" . . . . . "000000159"^^ . "landform" . "false"^^ . . "AddexBio cell line products" . "Alvin Walker" . . . "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output."^^ . . . "ECMDB00005"^^ . . . . . . . . . . . . . "An ontology to support disciplinary annotation of Arctic Data Center datasets."^^ . . "UPPRO" . . "plant phenotypes and traits" . "false"^^ . . . . . "sweet.reas" . . "CHEBI" . "Jörg Overmann" . . "Citation Typing Ontology" . "https://www.genome.jp/virushostdb/$1"^^ . "http://sweetontology.net/realmGeol/"^^ . . "engineering" . "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. "^^ . . "Organization" . . . . "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1"^^ . . . "vocabularies" . "experimental measurement" . . . . "http://www.w3.org/ns/org#$1"^^ . "false"^^ . . . "http://sweetontology.net/stateEnergyFlux/"^^ . . . "life science" . "structrual bioinformatics" . "nfdi4chem" . . "https://w3id.org/kim/schularten/$1"^^ . . . . . "DragonDB Allele" . "faldo" . . . . "^\\d+$"^^ . . . "identifier for researchers in Japan used in government-based research funding (from 1980s)"^^ . "Bryce Mecum" . "https://cropontology.org/rdf/CO_359:"^^ . "sorealg" . "https://www.lidcast.co.uk/ontologies/RE#"^^ . "false"^^ . . . . . . "One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]"^^ . . . "livestock" . "dataplant" . . "oio" . "nfdi4ing" . . . . "^MIRT\\d{6}$"^^ . . . . . . . "https://mibig.secondarymetabolites.org/go/"^^ . "iclc" . . "Air"^^ . "http://purl.obolibrary.org/obo/TGMA_$1"^^ . . "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4Objects" . . . . . "water management" . "eNanoMapper ontology" . "http://sweetontology.net/realmSoil/"^^ . "NRFC051"^^ . "^\\d{1,9}$"^^ . . . . . . . "^\\d+$"^^ . . . "https://www.ebi.ac.uk/complexportal/complex/$1"^^ . "eukaryotic" . . "C12345"^^ . . . . . . "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data."^^ . . . "Urmas Kõljalg" . "300108/p3934_A-172"^^ . . . . "Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining basic information on community-related web services."^^ . . . . . . "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments."^^ . . . . "false"^^ . . "life science" . . "^[1-9]\\d*$"^^ . "false"^^ . "^\\d{6}$"^^ . . . "SM_UB-81"^^ . "civic.aid" . . . . . "false"^^ . "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances."^^ . . "Vertebrate Taxonomy Ontology" . . . "language" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation"^^ . . . "https://w3id.org/okn/o/sd#$1"^^ . . . "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins."^^ . . . . . . . "^\\d+$"^^ . "Process Chemistry Ontology" . . "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1"^^ . . . "^\\d+$"^^ . . "Kevin Drew" . . . . "^[1-9][0-9]{1,6}$"^^ . . . . "This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from )" . . . . "The bioRxiv is a preprint server for biology"^^ . "sequence" . "A user in DockerHub"^^ . "http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/"^^ . . "Adriano Rutz" . "http://sweetontology.net/realmAstroBody/$1"^^ . . "https://pharmacodb.ca/tissues/"^^ . . . . . "^[A-Z0-9]{4}$"^^ . "protein" . "phenomena" . "Numeric Type" . . . . . . "^\\w+$"^^ . . "sibo" . "false"^^ . . . "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases."^^ . . . . . "ontology" . . . "systems biology" . . "https://www.sharkipedia.org/traits/$1"^^ . . . "https://horizondiscovery.com/en/search?searchterm=$1"^^ . . . . . . "http://purl.org/ontology/rec/core#"^^ . . . "http://sweetontology.net/matrBiomass/"^^ . . . "PWY3O-214"^^ . . . "https://bioregistry.io/tkg:"^^ . . . . . . "findex.raum" . . "exposure" . "gene" . . . . "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1"^^ . . "^\\d+$"^^ . "Energy Market Roles ontology" . . . . . "https://ngdc.cncb.ac.cn/lncbook/gene?geneid=$1"^^ . . "6T"^^ . . "Biolink Model Registry" . "false"^^ . "ontology" . . "mirnest" . "environmental science" . . . . "false"^^ . . . "100000001"^^ . . "DOCiD" . . . . . . . . "mutant" . "IRD Segment Sequence" . . . "ontology" . "AcidbaseChemistry"^^ . "http://purl.obolibrary.org/obo/BMONT_"^^ . . . . "http://uri.neuinfo.org/nif/nifstd/sao"^^ . "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"^^ . . "AGRO" . "Carnegie Stage" . "TopicClassification"^^ . . "Selventa Families" . "reactions" . . "te" . "Curriculum Course Syllabus Ontology" . . "sweet.repmst" . "organ" . . . . "https://w3id.org/citedcat-ap/"^^ . . "Gene Ontology Registry" . . "true"^^ . . "http://www.kegg.jp/entry/"^^ . "https://w3id.org/fair/principles/terms/"^^ . . . . "https://www.confident-conference.org/index.php/Event:"^^ . . . "controlled vocabularies" . "https://vocabularies.cessda.eu/vocabulary/LifecycleEventType?lang=en#code_$1"^^ . . . "http://uri.neuinfo.org/nif/nifstd/"^^ . "sweet.hues" . . . "^\\d+$"^^ . "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$"^^ . . . . "cell biology" . "Tuan Amith" . . "https://www.kew.org/data/grasses-db/www/$1"^^ . . . "civic.gene" . . "The responsible person for a resource" . "identifier for a document in IEEE Xplore"^^ . . . "wwf.ecoregion" . . . . . . "plant phenotypes and traits" . . . "^\\d+$"^^ . . "^\\d+$"^^ . "toxicity" . "state fluid" . "https://openalex.org/$1"^^ . "pombase" . "The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases."^^ . . "https://ssbd.riken.jp/database/project/$1"^^ . . . "false"^^ . . . "0000339"^^ . . . . "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment."^^ . "disorder" . . "biomedical science" . "1"^^ . . "biomedical science" . . "https://vocabularies.cessda.eu/vocabulary/TypeOfFrequency?lang=en#code_$1"^^ . "ontology" . "^\\d+$"^^ . . . "viroligo" . "https://w3id.org/emmo/domain/atomistic#"^^ . "Data Commons" . . . . "genetree" . . . "false"^^ . "computer science" . _:N0d2d6757a8704aac8cfc82d2d2bac493 "Heinrich Herre" . "https://www.wwpdb.org/pdb?id=pdb_0000$1"^^ . . . . "biomedical science" . . "life science" . . . "molecular chemistry" . . . "maize" . "earth sciences" . . . . . . "spar" . "^P\\d+$"^^ . . "curriculum" . . . . . . "Acceleration"^^ . . . . "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$"^^ . "Non-Coding RNA Ontology" . . "^rs[0-9]+$"^^ . "subject agnostic" . "Melanie Courtot" . . "http://purl.obolibrary.org/obo/PCL_"^^ . . "true"^^ . "false"^^ . "Scientific Evidence and Provenance Information Ontology" . "Resource" . . "Nicholas Furnham" . "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . _:Ndd63309fd41c4994a61a04b3cc8cf0bf . "http://rs.tdwg.org/acsubtype/"^^ . . . . "http://stitch.embl.de/interactions/"^^ . . "Job.Dekker@umassmed.edu" . . . "PRI10"^^ . "biomedical science" . . "0000010"^^ . . . . "Ontology for manufacturing and logistics" . . . . . . . . "false"^^ . . "2170610"^^ . . "ChEMBL-Targets" . . . . "Abundance"^^ . . . . . "gene" . . "sophatmos" . . . "Michelle Giglio" . . . "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1"^^ . "Hannah Dörpholz" . . "interaction" . . "http://www.pharmgkb.org/gene/"^^ . "true"^^ . "earth sciences" . . "Audubon Core uses the terms ac:variant and ac:variantLiteral to provide information about the size, extent, and availability of the Service Access Point of a media item. This controlled vocabulary provides values for those terms."^^ . . "sweet.mapa" . . "taxonomy" . . "Taxonomy in DEIMS SDR"^^ . . . . "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS."^^ . "ess" . "RDFa Core is a specification for attributes to express structured data in any markup language. The embedded data already available in the markup language (e.g., HTML) can often be reused by the RDFa markup, so that publishers don't need to repeat significant data in the document content. (from https://www.w3.org/TR/rdfa-core/)"^^ . "digital curation" . . "ohara@kazusa.or.jp" . "wanglab.tj@outlook.com" . . . "Vertebrate Breed Ontology Issue Tracker" . . "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones."^^ . . . "https://bioregistry.io/gabi:"^^ . "gold.meta" . "http://lincsportal.ccs.miami.edu/datasets/#/view/"^^ . . . . "atmosphere front" . "digital humanities" . "computer science" . "ess" . . . . . . . "fair data spaces" . . "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM="^^ . . . . . "http://www.genome.jp/dbget-bin/www_bget?cpd:"^^ . . . "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects."^^ . . . "false"^^ . "gemma.l.holliday@gmail.com" . . . . . . . . "bto" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Validation"^^ . "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept"^^ . "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms."^^ . . . . . "^\\d{7}$"^^ . . . "false"^^ . . . . . "false"^^ . "0002902"^^ . . "gene" . "^\\d{7}$"^^ . . "false"^^ . . "rna" . . . "^\\w{5}\\.\\d{2}\\..*$"^^ . "^\\d+$"^^ . "deo" . "http://purl.obolibrary.org/obo/EPO_$1"^^ . . "ontology" . "0001885"^^ . . "glottolog" . . "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products."^^ . "dideo" . "false"^^ . . . . . "life science" . . . "ontology" . . . . . "obo" . . . . . . "gene group" . "10194"^^ . . _:Nebd7d29858854ffaab04f09023b7ed08 . "norine" . "ontology" . "research" . . . "Semantic Web Context" . "https://www.ncbi.nlm.nih.gov/nucleotide/$1"^^ . . "http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#"^^ . . . . . . . . . . . "sophw" . "http://purls.helmholtz-metadaten.de/cdos/cdco/"^^ . "Uniprot Core Ontology" . "^\\d{3}$"^^ . . "SWEET Ontology Phenomena Atmosphere Front" . . . . . . . . . . . . . "http://data.europa.eu/8mn/euroscivoc/$1"^^ . "Sabine.Oesterle@sib.swiss" . "UBPROP" . "subject agnostic" . . "apollosv" . . . "2gc4E"^^ . . . . "https://cbcb.cdutcm.edu.cn/AGD/genome/details/?id=$1"^^ . . . "http://www.purl.org/dabgeo/conceptual/energymarketroles#$1"^^ . . . . "false"^^ . "image" . . "^EGAS\\d{11}$"^^ . . . . . . . . . "ColdFront"^^ . . . "ChemIDplus" . . . "https://merckindex.rsc.org/monographs/$1"^^ . "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1"^^ . . . "atfdb.family" . . "DTXSID7032004"^^ . . . . . "http://purl.obolibrary.org/obo/PdumDv_$1"^^ . "aftol.taxonomy" . "http://purl.bioontology.org/ontology/npo#NPO_"^^ . . . . "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Mineral"^^ . . . . . "ontology" . . . "Signaling Gateway" . "barrett@ncbi.nlm.nih.gov" . "oers" . "false"^^ . . . . . . . "ClinVar Submitter" . . . . . "inn" . "SWEET Ontology State Role Representative" . "life science" . . "false"^^ . . . . . . . "OGI.owl" . . "Perry Miller" . . . "knowledge and information systems" . . . . . "Judith A Blake" . "CLAVAS: ISO 639-3 Language Codes" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Direction"^^ . . . "false"^^ . "environmental science" . . . . . "SPAR Ontologies" . . . . "MycoBrowser smegmatis" . "biochemistry" . . "^\\d{7}$"^^ . "MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for chemical compounds with experimentally validated bioactivity in cellular contexts."^^ . . "Animal Genome Size Database" . "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID="^^ . "false"^^ . "Steven G. E. Marsh" . "http://sweetontology.net/propFunction/"^^ . . . "false"^^ . . . . "dna" . . . "ICD10CM" . "MEROPS Family" . . . . "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry."^^ . . "^TA\\d+$"^^ . "http://scop.berkeley.edu/sunid=$1"^^ . . . "CAID" . . "https://www.ebi.ac.uk/ena/browser/view/"^^ . . "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1"^^ . . . . . . "Rules for GeoSPARQL"^^ . "PhosphoSite Protein" . . . "TR0000001"^^ . . . . . "TAB-884"^^ . "H3.03.00.0.00007"^^ . "false"^^ . "false"^^ . . . "dna" . . . . . "genomics" . . . . "false"^^ . . . . . "false"^^ . . "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)"^^ . . "A controlled vocabulary of media resources, such as audio, cartographic, manuscript, multimedia, etc."^^ . . "educational resources" . . "sweet.phatmol" . . "2"^^ . "Metabolites in drugbank"^^ . "false"^^ . "chembiosys.model" . "vmhmetabolite" . . "^\\d+$"^^ . . . "https://vocab.nerc.ac.uk/collection/$1"^^ . "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid="^^ . "KEGG gene" . "^C?\\d+$"^^ . "false"^^ . "ftonto" . . . . . . . . "Analyses of microbiome data within MGnify"^^ . . . "gemet.concept" . "neuromorpho" . "true"^^ . . . "drugs" . "cmecs" . "ecogene" . "laylamichan@ciencias.unam.mx" . "^MCDS_C_[a-zA-Z0-9]{1,10}$"^^ . "zhengj2007@gmail.com" . . "^(VT)?\\d{7}$"^^ . "^\\d{7}$"^^ . "Bob Thacker" . . . "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them."^^ . . . . "http://scop.berkeley.edu/sccs="^^ . "268"^^ . . . "phenomena" . . "A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . . . "An ontology to describe standards related to Industry 4.0 and Smart Manufacturing"^^ . . . "subject agnostic" . . . . "http://www.ontology-of-units-of-measure.org/resource/om-2/"^^ . . _:N7e929892fa194f07bb5333f0c4b15c87 . . . . . . . . "gene expression" . . "^FB\\d{8}$"^^ . "obo" . "false"^^ . "nfdi4ing" . . "PSI Extended File Format" . "false"^^ . "oslc" . . . . "IP" . . . "ontology" . . . . . . . . . . "oma.hog" . "false"^^ . "VIAF cluster ID" . . . "false"^^ . . "ganesh.swaminathan@sanger.ac.uk" . . . "medicine" . "false"^^ . "http://www.xmetdb.org/xmetdb/protocol/$1"^^ . . "rcb" . . "pathway" . . . . . . . . . "biomedical science" . "saref.wearable" . . "http://sweetontology.net/stateRoleRepresentative/"^^ . "GiardiaDB" . . . "https://data.chembiosys.de/projects/$1"^^ . "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs."^^ . "241889"^^ . . . . "Open Digital Rights Language Ontology" . "false"^^ . . "^\\d+$"^^ . . . "anatomy" . "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val="^^ . "false"^^ . _:N7cc8567e7b9c4b9491b7d261867fbb61 "brennan.thomas@epa.gov" . "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples."^^ . "Wojciech M. Karlowski" . "https://www.emsl.pnnl.gov/project/$1"^^ . . . . . "arrayexpress" . . "lcsh" . . "MultiCellDS Digital snapshot" . . . "life science" . . "false"^^ . . "gene" . "http://sweetontology.net/reprMathFunction/"^^ . "http://purl.obolibrary.org/obo/WBls_$1"^^ . . "eVOC (Expressed Sequence Annotation for Humans)" . . . "transgenic" . . . "pscdb" . "http://sweetontology.net/propCategorical/$1"^^ . "sophod" . "linguist" . . . "http://purl.bioontology.org/ontology/VANDF/"^^ . . . "SWEET Ontology State Space" . "xao" . "https://www.genedb.org/gene/$1"^^ . "soman" . . "plant phenotypes and traits" . . . "https://iconclass.org/"^^ . . . . "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId="^^ . . . . . "false"^^ . . . "protcom" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Volcano"^^ . . . "TreeHub is a taxonomical database for trees. TreeHub contains extracted phylogenetic data and integrates relevant species information for each identifier."^^ . "comparative genomics" . . . . . . . . . "odc.sci" . "http://rdfs.org/sioc/services#"^^ . . "cell biology" . . "chromosome" . . "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1"^^ . "Kathryn Dumschott" . . "Guangshun Wang" . . . . _:N5a1da31ab22f4870b69675945b3bd40b "Jonathan Bard" . "certain"^^ . . . . . . . . . . . . . . "ontology" . . . . . "false"^^ . "donovan.parks@gmail.com" . "antibodyregistry" . . . . . . "data visualization" . "metascience" . "000320401"^^ . . . "GlycoNAVI" . . . . . "skos-thes" . "^\\d{7}$"^^ . "chembiosys.data" . . . . . . . "^\\d+$"^^ . "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling."^^ . "snomedct" . . "https://dblp.org/pid/$1"^^ . . "https://www.biosino.org/rdbsb/bioparts_detail/$1"^^ . . . "h.doerpholz@fz-juelich.de" . . . "reagents" . . . "classification" . "structure" . "https://www.ebi.ac.uk/ega/datasets/"^^ . "evolutionary biology" . "eccode" . . "https://cells.ebisc.org/"^^ . "true"^^ . . . . . "state realm" . "http://www.w3.org/ns/adms#"^^ . . . . . . . . . . . "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1"^^ . . "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid="^^ . "meshUID" . . . . . "Cassava ontology" . "Dutch Research Council file numbers are used for approved grants."^^ . "RepresentativeRole"^^ . . "mr"^^ . "http://kif.cs.lth.se/ontologies/rosetta.owl#"^^ . . . . . "SWEET Ontology Human Decision" . "000064"^^ . . . "https://publons.com/researcher/$1"^^ . . "nmdc" . "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union."^^ . . . "gold" . . "food" . . "ontology" . . . . . "^CLPUB\\d+$"^^ . _:Nf7146456589947a6a638c937c6a09604 . "gtr" . . "structure" . "true"^^ . . . "false"^^ . . "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . . "EarthEasternBoundaryCurrent"^^ . . . . "http://www.w3.org/2004/02/skos/core#$1"^^ . "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease"^^ . . . . "enzyme" . "ess" . . . . "0000001"^^ . "G77500AY"^^ . . "http://www.w3.org/ns/dcat#"^^ . "drduke" . . . . . . . "simon.harding@ed.ac.uk" . . . "data analysis" . "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view."^^ . "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . . "HGNC Gene Group" . . . . . "http://localhost/plosthes.2017-1#"^^ . "APID Interactomes" . . "LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR)."^^ . . "^\\d{3}$"^^ . "dg5b0d" . "COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif."^^ . . "radiomics" . . . "https://schema.coypu.org/vtf#"^^ . . "civic.did" . "Philipp Bucher" . "https://gold.jgi.doe.gov/resolver?id=$1"^^ . . . . "ac.variant" . "^UCR\\d{5}$"^^ . "false"^^ . . . . . . . . "Insect Cell Line Database" . . . "education" . . "21723"^^ . "http://purl.obolibrary.org/obo/OHD_"^^ . "Core Ontology for Robotics and Automation" . "og" . "16333295"^^ . "^\\d+$"^^ . . . . . "plant phenotypes and traits" . "https://saref.etsi.org/saref4ener/$1"^^ . . . . . . . "pesticides" . "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"^^ . "https://w3id.org/metpo/$1"^^ . . "false"^^ . "DDB0016567"^^ . . . . . . . . "frim1"^^ . . "nfdi4culture.id" . "https://suprabank.org/additives/"^^ . . "Cell Line Ontology" . . . . . "SWEET Ontology Representation Time" . "https://zenodo.org/record/"^^ . . . . . . _:N410c642aad994bbab67fc34f91c6cddc "Allen Institute for Brain Science" . "^(HOM)?\\d{7}$"^^ . . . . . "https://www.uniprot.org/proteomes/$1"^^ . "^\\d{7}$"^^ . . . . "kuiper@bio.ntnu.no" . . . . . . . . "organic molecular chemistry" . "social and behavioural science" . . "ZFA_RETIRED" . "true"^^ . . . "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"^^ . . . . "Database of human Major Histocompatibility Complex" . . "A version of the Materials Data Vocabulary structured as Simple Knowledge Organization System (SKOS). The XML was originally created by the TemaTres software. This vocabulary describes the applicability to material science of records in the NIST Materials Resource Registry (NMRR - https://materials.registry.nist.gov/). The NMRR allows for the registration of materials resources, bridging the gap between existing resources and the end users. The NMRR functions as a node in a federated system, making the registered information available for research to the materials community. This is being developed at the National Institute of Standards and Technology and is made available to solicit comments from the Material Science community. (An Excel version of the file is also included in the distributions for ease of use.) Please cite this resource as: Medina-Smith, Andrea; Becker, Chandler (2017), Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary , National Institute of Standards and Technology, https://doi.org/10.18434/T4/1435037"^^ . "Q-2958"^^ . . "The ontology developed for representing wildlife monitoring capture events, the setup within which they were observed and their results."^^ . . "digitrubber" . . . . "do12@sanger.ac.uk" . . "Virus' miRNA target" . "http://cor.esipfed.org/ont/earthcube/MOLA_"^^ . . . "aftol.category" . . . "physiology" . "4447"^^ . . "m4i" . . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes."^^ . . "Physiome Model Repository workspace" . "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee."^^ . "software engineering" . . "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1"^^ . "SWEET Ontology Material Sediment" . "Mauno Vihinen" . . . "^\\d{7}$"^^ . "^\\d{7}$"^^ . . . "structure" . . "15567"^^ . "MycoBrowser" . . . "anatomy" . "phenomena" . "computer science" . . "http://ascl.net/$1"^^ . "relationships" . . . "http://rdf-vocabulary.ddialliance.org/lifecycle#$1"^^ . . "aop.stressor" . . . . "Biomarker Ontology" . . "http://www.molbase.com/en/index.php?app=search&search_keyword=$1"^^ . . "Adrian Gschwend" . . . . . "An additional Japanese clinical trial registry"^^ . "^GPST[0-9]{6}$"^^ . "ontology" . . "EBI-2307691"^^ . . . . "https://schema.coypu.org/global#"^^ . . "false"^^ . "^[0-9]+$"^^ . "CTX" . . "http://sweetontology.net/matrRock/"^^ . . . . "https://opencitations.net/index/ci/$1"^^ . . "https://cropontology.org/rdf/CO_320:"^^ . "ENST00000407236"^^ . "Oral Health and Disease Ontology" . . . "^\\d{7}$"^^ . . . . . . "https://bioregistry.io/metaregistry/scholia/$1"^^ . . "false"^^ . . . . "mmdb" . . "civil engineering" . . _:N6345fc15ae8a4c6d938e932ab150f2eb . . . . . . . "mgnify.samp" . . "^acc\\d{4}$"^^ . "VFDB Genus" . . . "sep" . . "PRO_0000016681"^^ . "faseb list" . "sweet.propo" . "ontology and terminology" . . "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation."^^ . . "cell" . "ontology" . . "medical biotechnology" . . . "chemistry" . . . . . . "0000070"^^ . . . . . "https://gpcrdb.org/protein/$1"^^ . . "codata.rdmt" . "Clair Kronk" . . "false"^^ . . . "louis@imbb.forth.gr" . . . . "mouse embryonic stem cell line" . . "https://purl.dataone.org/odo/MOSAIC_"^^ . "ipi" . . . . "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id="^^ . "wikipedia" . . . "^\\d{3}$"^^ . . . . . . . . . . . . "http://gmd.mpimp-golm.mpg.de/Analytes/"^^ . "cath.domain" . "https://www.gtexportal.org/home/gene/"^^ . . . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . . . "Collection" . . "10.1038/s41597-022-01807-3"^^ . . . "gene" . . "false"^^ . . "obo" . . . "https://nsrrc.missouri.edu/nsrrc$1info/"^^ . . "Integbio Database Catalog provides whereabouts information (URL), database description, biological species and other attributes (metadata) of Japanese and international life science databases to make it easier for users to find databases they need. This catalog has been developed as a part of the integration of life science databases promoted by four ministries in Japan: the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor, and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF), and the Ministry of Economy, Trade, and Industry of Japan (METI). (from https://integbio.jp/dbcatalog/en/about)"^^ . . . . . . "orpha" . . "http://dbpedia.org/resource/$1"^^ . . . "protein" . "http://purl.obolibrary.org/obo/EUPATH_"^^ . . "interaction" . . . . "material science" . "^\\d+$"^^ . . . . "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1"^^ . . . "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations."^^ . . . . "https://w3id.org/babelon/$1"^^ . . . . . . "engineering" . . "obo" . "Cell line collections (Providers)"^^ . . "person" . . "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g="^^ . . "structural biology" . . "false"^^ . . "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations."^^ . "gerhard.mayer@rub.de" . "pharmacodb.dataset" . . . "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence."^^ . . . . "https://cordis.europa.eu/article/id/$1"^^ . . . "351"^^ . . "nfdi4chem" . . "DLayer"^^ . . "https://schema.org/"^^ . . . "^\\d+$"^^ . . _:N5d5d014434a4413ea293f0cbd416f393 "David J. McLaughlin" . "A model in the ChemBioSys data platform"^^ . "An ontology for modeling global trade alerts, mainly inspired by the Global Trade Alerts repository."^^ . . . "false"^^ . . "40000617"^^ . "ess" . "Illumina Probe Identifier" . _:Nc15f7115891d4a4685e29fc0441b6669 "mssohelp@meddra.org" . . "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id="^^ . "linguistics" . "https://sed-ml.org/urns.html#format:"^^ . "http://purl.obolibrary.org/obo/MSIO_"^^ . "Accumulation"^^ . "biomedical science" . . . "Ontologized MIABIS" . . "nsf.award" . "hsapdv" . . "C0000000001"^^ . . . . . "apaonto" . . . . . . . . "idocovid19" . "tfsco" . "https://pharmacome.github.io/conso/$1"^^ . . . . . "00000022"^^ . . "false"^^ . . "https://www.ebi.ac.uk/pdbsum/"^^ . . "https://repeatsdb.org/protein/"^^ . . . "sophoc" . . "false"^^ . "kinetics" . . "life science" . "false"^^ . . "http://purl.obolibrary.org/obo/MAO_"^^ . "^RCB\\d+$"^^ . "Susan J. Brown" . . "Juan Jose Medina Reyes" . "false"^^ . "Michelle S Scott" . . "ontology" . . "dataplant" . . . "false"^^ . "https://www.dbgi.org/earth_metabolome_ontology/#"^^ . . "obo" . . . . . . . . . . . . . "SWEET Ontology Realm Geologic Basin" . . . . . "ktk@netlabs.org" . "https://vocabularies.cessda.eu/vocabulary/AnalysisUnit?lang=en#code_"^^ . . . "Ligand-Gated Ion Channel database" . "^\\d+$"^^ . . "false"^^ . . . . "50885"^^ . . . . . "jcsd" . . . "false"^^ . . . "ontology" . "http://www.orpha.net/ORDO/Orphanet_$1"^^ . . . . . . "http://purl.obolibrary.org/obo/ERO_"^^ . . . . "COEXISTENCE - Thesaurus of intersectionality and decolonial issues: black studies, gender, sexuality and feminist studies"^^ . . . "vso" . . . . "^\\d+$"^^ . "Analysis Unit" . . . . "false"^^ . . . . "74ed2670_657d_4f0b_b0a6_3f13bc2e9c17"^^ . . . "CUT"^^ . . . . . "Alicia Clum" . "sweet.stv" . "SWEET Ontology Material Facility" . "rs17852708"^^ . . . "mriffle@u.washington.edu" . "gmelin" . "has provider formatter" . . . . . "false"^^ . "obo" . . "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement."^^ . . "genetics" . . "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$"^^ . "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary"^^ . _:N7cc8567e7b9c4b9491b7d261867fbb61 . "BDGP insertion DB" . . "http://purl.obolibrary.org/obo/OMP_$1"^^ . . . . . "http://pax-db.org/#!protein/$1"^^ . "UMR7315"^^ . . . . . "bioinformatics" . . . . "Tiffany J. Callahan" . "000260236"^^ . "open educational resources" . . . . "Building Ontology" . . . . "^(C|D|Q)\\d+$"^^ . "preclinical studies" . "plant" . . . . . "geologic fault" . "realm" . . . . . . "http://purl.obolibrary.org/obo/OBCI_"^^ . . . "slm" . . "embryonic stem cell line" . . . "soprop" . "false"^^ . . "0005926"^^ . "Damian Smedley" . "gene" . "^[a-z]+(\\-[a-z]+)*$"^^ . "PolBase" . "false"^^ . . . . "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1"^^ . . . . . "false"^^ . . . . "sequence" . . . "Variables relations for Social Sciences research data" . "fisheries science" . . . "^2-s2\\.0-\\d+$"^^ . . "https://w3id.org/kim/isced-2011/level"^^ . . . . "^[a-zA-Z0-9_\\.]+$"^^ . . "http://sweetontology.net/propTemperatureGradient/$1"^^ . "obo" . "http://vocabularies.wikipathways.org/wpTypes#$1"^^ . . "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment."^^ . "http://purl.obolibrary.org/obo/MPIO_"^^ . . . "gitea/gitea"^^ . . . "AdministrativeUnit"^^ . . . . "ceds.element" . . "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF)."^^ . . "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways."^^ . . "https://w3id.org/class/sectors/"^^ . . "Genetic Testing Registry" . . "atsushi.yoshiki@riken.jp" . "http://www.cathdb.info/domain/$1"^^ . . . . . "false"^^ . "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed."^^ . "molecular entity" . "Common Core Ontologies" . . . . "Gene Ontology Annotation Database" . . "epigenetics" . "synbip.sbp" . . "LigandBook" . "sweet.reaaw" . . . "epigenetics" . . "ElNino"^^ . "^\\d{7}$"^^ . . . . . "obo" . "lcnaf" . "http://sweetontology.net/propFraction/$1"^^ . . . . . . . . . . "0002350"^^ . . "false"^^ . . "https://cropontology.org/rdf/CO_334:$1"^^ . "true"^^ . . . "false"^^ . "rgd.qtl" . . . "Immune Epitope Database References" . "skm" . . "1"^^ . "CDC Publisher Names" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock"^^ . . "http://theworldavatar.com/ontology/ontocompchem/ontocompchem.owl#$1"^^ . "https://uts.nlm.nih.gov/uts/umls/concept/$1"^^ . . "http://func.mshri.on.ca/yeast/genes/list_functional_scores/"^^ . "false"^^ . . . "sasutton@uw.edu" . "https://uts.nlm.nih.gov/uts/umls/concept/"^^ . . . . "false"^^ . . "enzyme" . . . . "https://mobidb.org/"^^ . "voc4cat" . "ab-1-ha"^^ . "true"^^ . . "photon science" . . "https://www.ncbi.nlm.nih.gov/nuccore/$1"^^ . "coriell" . . . . "has responsible" . "http://purl.obolibrary.org/obo/EHDAA2_"^^ . "protein" . "false"^^ . "proteomics" . . . . "ddi.characterset" . . "database management" . . . . "modification" . . . "Beta Cell Genomics Ontology" . "An extension of SKOS for representaion of nomenclatures"^^ . . "false"^^ . "FxnI151FMs"^^ . "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1"^^ . . . "01"^^ . . . . . . . . "sweet.repscd" . "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools."^^ . . . "protein" . . "hipsci" . . . . . . . . "spdx.term" . . "^\\d+$"^^ . "http://purl.org/pan-science/PaNET/PaNET"^^ . "fly" . "tib" . . "miR-1"^^ . "protein" . . . . . . . "togovar" . . . . . . . "rnamods" . "https://gtdb.ecogenomic.org/tree?r="^^ . . . "SCOP(e) concise classification string" . . "obo" . . . "false"^^ . "https://repeatsdb.org/structure/"^^ . "^\\d{7}$"^^ . . . . . . "Ontology of species-neutral phenotypes observed in pathogen-host interactions."^^ . . "EST database maintained at the NCBI." . . . "sustainability" . "false"^^ . . . . . . . . . . "false"^^ . . . "Thermo Fisher Scientific" . . _:Ne9e82841b8c7477e994414fdea86e868 "Alain J. Cozzone" . "genomics" . . "SAREF extension for Agriculture" . . . . "http://sweetontology.net/humanDecision/$1"^^ . "^[A-Z][a-z][0-9]+$"^^ . . . . . . . "https://terminology.hl7.org/CodeSystem-v3-"^^ . "http://purl.obolibrary.org/obo/FLU_$1"^^ . "shacl" . . "^DBMET\\d+$"^^ . . "immunology" . "false"^^ . . . "false"^^ . . . "ghr" . "11478"^^ . . . . . "registry" . "STUDY1040"^^ . . "sopropsl" . "Common Science and Technology Resources" . "Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management."^^ . "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data."^^ . . "state role chemical" . . . . "co_331" . "https://www.xenbase.org/entry/$1"^^ . . "http://purl.org/ontology/bibo/$1"^^ . . . . "organic chemistry" . "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an="^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process"^^ . . . . "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive."^^ . . . . . . "true"^^ . . "Alzheimer Gene Database" . . "natural science" . "life science" . . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them."^^ . . "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"^^ . . . . "nfdi4culture.cto" . . "cao" . . "true"^^ . . . . . "^ACYPI\\d{6}(-RA)?$"^^ . . . "https://omabrowser.org/oma/vps/$1"^^ . . . "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML)."^^ . . "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc."^^ . "SASDAX8"^^ . . . "data analysis" . . . . . . . . "https://www.ebi.ac.uk/chembl/cell_line_report_card/"^^ . "grid" . . . . "https://suprabank.org/molecules/$1"^^ . "sweet.phfd" . . . . "http://purl.org/spar/mito/$1"^^ . "obo" . . "mathematical" . "UMLS CUI" . . "pd_st" . "https://creativecommons.org/ns#"^^ . . . . . . . . . . . . . . "Yi Zhao" . . . "identifier for an organisation in author affiliations per Scopus"^^ . "https://github.com/semanticchemistry/semanticchemistry" . "sisu" . "kegg.ligand" . "pns12@hermes.cam.ac.uk" . . "aerosol" . . "false"^^ . . . "GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS)"^^ . "http://purl.obolibrary.org/obo/FBbt_"^^ . . _:Nd37ef582ce0145f19c8af0c1cb83f3a7 "patrick.le-boeuf@bnf.fr" . . . "0110974"^^ . . . . . "nfdi4ing" . "ontology" . . "4776"^^ . . "https://www.genenames.org/data/genegroup/#!/group/$1"^^ . . . "Rice ontology" . "false"^^ . . "David Craik" . . . "http://purl.org/spar/bido/$1"^^ . "single-cell multimodal omics" . "Database of validation results for ligands and non-standard residues in the Protein Data Bank."^^ . . . . . . "false"^^ . . . . . "Reference Sequence Collection" . . . . . "sweet.phel" . . "http://www.opengis.net/ont/geosparql#"^^ . . . "false"^^ . . . "clo" . "Altostratus"^^ . "obo" . "false"^^ . . "Biocuration Conference 2025 Collection" . . "gene" . . "Porifera Ontology" . "Online Mendelian Inheritance in Man" . . "The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology."^^ . . . . "https://w3id.org/kdsf-ffk/$1"^^ . . . . . "Ronald C. Beavis (Ron Beavis)" . . . . . . . . "metabolomics" . "epigenetics" . . . . "http://www.wikidata.org/entity/"^^ . . . "https://www.ncbi.nlm.nih.gov/snp/"^^ . "ontology" . . . . . "sorepdsa" . "27267"^^ . . . . . . . . . "physics" . . . . "Database for Prokaryotic Operons" . . . "gene feature" . . . "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . . . . "gcst" . . . "http://purl.obolibrary.org/obo/RBO_"^^ . "https://www.abmgood.com/search?query=$1"^^ . . . . "PubChem Classification" . "^\\d+$"^^ . . . "Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality."^^ . . "https://cgap.nci.nih.gov/Pathways/BioCarta/$1"^^ . "environmental science" . . . . . "false"^^ . . . . "LDTP03903"^^ . . . . . "genetics" . "https://commonchemistry.cas.org/detail?cas_rn="^^ . "ruili.huang@nih.gov" . . "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies."^^ . "http://purl.obolibrary.org/obo/MFMO_"^^ . "RTECS is a compendium of data extracted from the open scientific literature. The data are recorded in the format developed by the RTECS staff and arranged in alphabetical order by prime chemical name. Six types of toxicity data are included in the file: (1) primary irritation; (2) mutagenic effects; (3) reproductive effects; (4) tumorigenic effects; (5) acute toxicity; and (6) other multiple dose toxicity. Specific numeric toxicity values such as LD50, LC50, TDLo, and TCLo are noted as well as species studied and route of administration used. For each citation, the bibliographic source is listed thereby enabling the user to access the actual studies cited. No attempt has been made to evaluate the studies cited in RTECS. The user has the responsibility of making such assessments."^^ . . _:N4a647bf78b834f048d1336de4e4337ca . . "space location" . . . . "false"^^ . . "ontology" . "rna" . "2004-2820"^^ . . "false"^^ . "http://purl.obolibrary.org/obo/MAXO_$1"^^ . "http://sweetontology.net/phenFluidInstability/$1"^^ . "000072"^^ . . "deims.sensor" . "^\\d{8}$"^^ . "digital planning and construction" . "https://sed-ml.org/urns.html#format:$1"^^ . "DiabetesOmic" . . "1"^^ . "obo" . "https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1"^^ . . . "structure" . "http://www.candidagenome.org/cgi-bin/locus.pl?dbid="^^ . . . . . "Dialnet author ID" . . . . . "metabolomics" . . _:N44157c7dd5d14a279fc29eada7d31c92 . "bibliography" . . . . . . . "http://w3id.org/kim/schulfaecher/$1"^^ . . "inxight-drugs" . "^[a-z0-9-]+$"^^ . "^\\d{4}$"^^ . . "spdx.terms" . . . . "SWEET Ontology Phenomena Fluid Transport" . . . . "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$"^^ . "DisProt region" . . . "http://www.kegg.jp/entry/$1"^^ . "wuhui@ibcas.ac.cn" . . . . "obo" . "0000254"^^ . . . . "cells" . "dictybase.est" . "Paul Flicek" . "population genetics" . "^[A-Za-z]+$"^^ . . . . . "https://www.thermofisher.com/antibody/product/"^^ . "tib.bo" . "Nanbyo Disease Ontology" . . . . . "false"^^ . . . "proteomics" . "dna" . "false"^^ . "157"^^ . . "phenotype" . "vssocore" . . . . . . "false"^^ . . . . "Store DB" . . "221058"^^ . "false"^^ . "000040"^^ . "^CP\\d+$"^^ . "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" . . "AC119"^^ . . . . "https://www.uniprot.org/proteomes/"^^ . . "Semantically-Interlinked Online Communities Services Ontology - Quote Ontology" . . . . . . . "false"^^ . . . "https://www.chemfont.ca/chemicals/$1"^^ . "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature."^^ . . "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$"^^ . "maggot" . . . . "sophsyc" . . . "false"^^ . . . . "^\\d+$"^^ . . . . "pco" . . . "Mike Cherry" . . _:Ne0e365ef472b48c3b52c2e7ef534868a . "Nicolas Maillet" . . . "ChemBioSys Dataset" . "http://www.gramene.org/db/literature/pub_search?ref_id=$1"^^ . "ontology" . . "proteomics" . "chemistry" . "education science" . "sweet.stro" . "Fossilworks Journal" . . . . "computer science" . . "5621"^^ . "infection process" . . "nfdi4energy" . . . . . . "biomedical science" . . "dg.f82a1a" . "f72958f5-7f42-4ebb-98da-445b0c6de516"^^ . . . "rnacentral" . . "http://purl.obolibrary.org/obo/OBCI_$1"^^ . . "developmental biology" . _:N64ae372b64af4fc1bb11bc74a7c8dd87 "Shawn Zheng Kai Tan" . "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1"^^ . . . . . "metagenomics" . . "CDB-00133756-001"^^ . "s4envi" . "http://purl.org/eis/vocab/scor#"^^ . "rnao" . . "true"^^ . "phenomena" . "https://www.storedb.org/?$1"^^ . _:Na47c38a9ea6f404ba7e0892884ae279e . "BinaryState"^^ . . . . . "he WOT, or Web Of Trust, schema is designed to facilitate the use of Public Key Cryptography tools such as PGP or GPG to sign RDF documents and document these signatures."^^ . . . . . . "abcd"^^ . . "https://vectorbase.org/gene/"^^ . "Chris Sander" . "The cBioPortal for Cancer Genomics" . . "https://www.enzyme-database.org/query.php?ec=$1"^^ . . . "https://www.worldcat.org/oclc/"^^ . "Global Biodiversity Information Facility" . "fly" . . . . . "dataplant" . . . . . . . . . "animal physiology" . . . "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$"^^ . "https://smpdb.ca/view/"^^ . "biology" . . . . "structure" . "hagr.gendr" . . . . . . . . "Wei Chen" . . . "humap3" . "false"^^ . "saref.auto" . . . "^TTHERM\\_\\d+$"^^ . "pharmacogenomics" . . . . . . "http://sweetontology.net/stateSpaceScale/"^^ . . . "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/"^^ . . . . . "15"^^ . . "Aquiclude"^^ . "soprocw" . "^\\d{7}$"^^ . . "The Hydra Core Vocabulary" . . . . . . . "00000674"^^ . "systems biology" . . "icd9cm" . . . . "2023-503698-40-00"^^ . "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/"^^ . "Ontology describing a controlled vocabulary for taxon ranks."^^ . . "pathwaycommons" . . . . "^\\d{8}$"^^ . . . . "https://nmrxiv.org/sample/$1"^^ . . "sweet.repdsv" . . . "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion."^^ . . "protonet.cluster" . . . . "false"^^ . . "ideal" . "wave" . "eco" . "brain" . "gene" . "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature."^^ . . . . "monitoring" . . . "^\\d+$"^^ . "sostv" . "^\\d{5}$"^^ . "genomics" . . . "Carl F. Schaefer" . . . . "^\\d{5}$"^^ . . "false"^^ . . "registry" . . . . "As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:\n- Research team and institution\n- The EMSL project DOI\n- Link to project data available in EMSLs Data Portal\n- Project type"^^ . . "A concept scheme that defines the types of relationships between a learning resource and a node in an educational framework."^^ . . . . . . "engineering" . "phenotype" . "gene" . . . . . "go.gpi" . "scopus.work" . . . . "systems biology" . "10007835"^^ . "Gene Ontology Issue Tracker" . "is deprecated" . . "https://ontology.iedb.org/ontology/ONTIE_"^^ . "http://purl.obolibrary.org/obo/$1"^^ . . . . . "http://sweetontology.net/realmLandform/"^^ . . . . "sophgv" . . . . . "Registry and database of bioparts for synthetic biology" . "false"^^ . . . . . . "false"^^ . . . . . . "1000"^^ . "dorothea.iglezakis@ub.uni-stuttgart.de" . "ali.syed@kaust.edu.sa" . . . "realm" . . . . "javier.millanacosta@maastrichtuniversity.nl" . . "agricola" . . . . . "sweet.rep" . . "Sanger Cell Model Passports" . "^[A-Za-z0-9-]+$"^^ . "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work."^^ . . . . . . "http://purl.obolibrary.org/obo/MmusDv_$1"^^ . "http://purl.obolibrary.org/obo/NIF_CELL_"^^ . "false"^^ . . . . "plant breeding" . . . . "5046"^^ . "Oryzabase Mutant" . "http://phenol-explorer.eu/foods/$1"^^ . . . "biocuration" . "Structural Classification of Protein - Stable Domain Identifier" . . . _:N5d5d014434a4413ea293f0cbd416f393 "davem@umn.edu" . "eff796f3-6195-11e5-8ac5-06603eb7f303"^^ . . "chris.overall@ubc.ca" . . . . . . . "gene" . . "Connection"^^ . . . "semantic web" . "Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications."^^ . . . . . "protein" . "The Data Model Language Controlled Vocabulary was created for NSF's EarthCube Program's Resource Registry. At this point it merely lists a few of the languages used by data model resources in the registry."^^ . . . "gtex" . . "Biological and Environmental Research Variable Ontology" . . . "Biological Imaging Methods Ontology" . "MU9_3181"^^ . "https://bmrb.io/data_library/summary/index.php?bmrbId=$1"^^ . . "https://www.uniprot.org/unirule/"^^ . . "00042"^^ . . "false"^^ . "DSSTox_Generic_SID" . . . . "pathguide" . "Content"^^ . "hmdb" . "Christopher Mull" . . . . . "a formalization of concepts and relations relevant to evolutionary comparative analysis"^^ . . "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms."^^ . . . "00077f1c-c45a-47ba-8e6c-1bf6b6b43fce"^^ . . . "fionamcc@arizona.edu" . "The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for individual biosynthetic gene clusters (BGCs) linked to their corresponding bacterial or archaeal source."^^ . . . . . . . "true"^^ . . "^\\w+(\\.)?\\d+$"^^ . "cellrepo" . . . . . . "AAC"^^ . "0019171"^^ . . . "ICD-10" . . "ssn.system" . . . "famplex" . . . . . . . "Pazar Transcription Factor" . . . . "Habronattus courtship" . . "life science" . . "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information."^^ . . . . . . . "Carlos Moreno" . . . . "false"^^ . . "Information Artifact Ontology Issue Tracker" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Speed"^^ . . . . . . . . "representation space geometry" . "false"^^ . "^[cdfgops]__\\w+\\S+$"^^ . "http://www.ncbi.nlm.nih.gov/clinvar?term=$1"^^ . . . . . . "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . . . "icldb" . "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression."^^ . "ecology" . . . . "Digital Reference" . "^\\d{6}$"^^ . "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$"^^ . . "open educational resources" . "EARL is a vocabulary, the terms of which are defined across a set of specifications and technical notes, and that is used to describe test results. The primary motivation for developing this vocabulary is to facilitate the exchange of test results between Web accessibility evaluation tools in a vendor-neutral and platform-independent format. It also provides reusable terms for generic quality assurance and validation purposes. [from homepage]"^^ . . . "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/"^^ . . "maaya.m466@gmail.com" . "^[0-9X\\-]+$"^^ . . . . . "Phenol-Explorer" . "CCSO is an educational ontology acting as a data model for concepts and entities within an academic setting, enabling also the annotation of potentially available resources. The ontology aims to conceptualize educational entities within Curriculum and Syllabus with appropriate coverage and quality, in order to support rich services on top for improving curriculum management and automatically enabling syllabus semantic processes. (from homepage)"^^ . . . . "https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem="^^ . "dna" . . . . . . "Brett G. Olivier" . . . . . . "erv" . . . . . . . . . "soreagcont" . . . . "http://sweetontology.net/matrEquipment/"^^ . "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1"^^ . "life science" . . . "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries."^^ . "0000108"^^ . . "life science" . "life science" . "combine.specifications" . "dwc.em" . . "https://publons.com/publon/"^^ . "mass spectrometry assay" . . . . "IPD-IMGT/HLA" . . . . "nucleotide" . . "34"^^ . . . . . . . . . "SHACL in SHACL" . . "false"^^ . "nextprot" . . . "NCI Pathway Interaction Database: Pathway" . . . . "false"^^ . . . . "bitterdb.cpd" . . . . . . . . "Xenopus Phenotype Ontology" . . . "evolutionary biology" . "bgee.family" . "Barley ontology" . . . "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1"^^ . . "false"^^ . "mediadive.ingredient" . "D00001"^^ . "cheminf" . "life science" . "Sumir H Pandit" . . . . "NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc."^^ . "https://mycobrowser.epfl.ch/genes/"^^ . . "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced."^^ . . "insdc.gca" . "has resolver formatter" . . . . "fishbase.species" . . . "nfdi" . . . . "http://www.onto-med.de/ontologies/gfo.owl#$1"^^ . . "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information."^^ . . "11"^^ . "false"^^ . "^\\w+$"^^ . . "article" . . . "ontology" . "The CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet. These terms are intended primarily to be associated with datasets that quantify concentration of chemical nutritional components derived from samples taken from any stage in the production of food raw materials (including from crops, livestock, fisheries) and through processing and supply chains. Additional knowledge associated with these dietary sources may be represented by terms that describe functional, physical and other attributes. Whilst recognising that dietary nutrients within food substrates may be present as complex and dynamic physical and chemical structures or mixtures, CDNO focuses on components typically quantified in an analytical chemistry laboratory. The primary CDNO class ‘dietary nutritional component’ contains hierarchical sets of terms organised to reflect commonly used classifications of chemical food composition. This class does not represent an exhaustive classification of chemical components, but focuses on structuring terms according to widely accepted categories. This class is independent of, but may be used in conjunction with, classes that describe ‘analytical methods’ for quantification, ‘physical properties’ or ‘dietary function’. Quantification data may be used and reported in research literature, to inform food composition tables and labelling, or for supply chain quality assurance and control. More specifically, terms within the ‘nutritional component concentration’ class may be used to represent quantification of components described in the ‘dietary nutritional component’ class. Concentration data are intended to be described in conjunction with post-composed metadata concepts, such as represented by the Food Ontology (FoodOn) ‘Food product by organism’, which derives from some food or anatomical entity and a NCBI organismal classification ontology (NCBITaxon) entity. The common vocabulary and relationships defined within CDNO should facilitate description, communication and exchange of material entity-derived nutritional composition datasets typically generated by analytical laboratories. The organisation of the vocabulary is structured to reflect common categories variously used by those involved in crop, livestock or other organismal production, associated R&D and breeding, as well as the food processing and supply sector, and nutritionists, inlcuding compilers and users of food composition databases. The CDNO therefore supports characterisation of genetic diversity and management of biodiversity collections, as well as sharing of knowledge relating to dietary composition between a wider set of researchers, breeders, farmers, processors and other stakeholders. Further development of the functional class should also assist in understanding how interactions between organismal genetic and environmental variation contribute to human diet and health in the farm to fork continuum."^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1"^^ . . . "http://purl.obolibrary.org/obo/XPO_"^^ . "protein" . . "Grape Ontology including OIV and bioversity descriptors. INRA July 2017"^^ . "http://www.genome.jp/dbget-bin/www_bget?ec:"^^ . . "biochemistry" . "ISTransbase is a highly reliable and accessible database that focuses on inhibitors and substrates of drug transporters, offering a wealth of vital information encompassing experimental methods, transport parameters, and references."^^ . . . "Cell line databases/resources"^^ . "ALX-210-175"^^ . . . "MGnify Study" . "The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public."^^ . "Cube db" . "tbreddy@lbl.gov" . "ena.embl" . . . "b97957"^^ . . "true"^^ . . . "Cell line collections (Providers)"^^ . "ontology" . . . "A UUID for a community indexed in the Data Liteacy Alliance (DALIA) web application"^^ . . . "dermatology" . . . . . . . . . "r.shrestha2@cgiar.org" . . . . . . . . . "botany" . "https://oerschema.org/$1"^^ . . . . "Catastrophic"^^ . . "hms.lincs.compound" . . . "^\\d{7}$"^^ . "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information."^^ . "Charge"^^ . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families."^^ . . . . "drug" . . "Eukaryotic Promoter Database" . "75"^^ . "image" . . . "false"^^ . "ncrna" . "tib.tso" . "GlyTouCan" . "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u"^^ . . "medicine" . "Food Classification and Description System (from FSA Food Type identifiers)" . . "true"^^ . "^KCT\\d+$"^^ . "82"^^ . "MGnify Analysis" . "metadata" . "http://www.w3.org/ns/rdfa#"^^ . "bibliography" . . . . . . "datacommons" . . . "phenomena" . "anatomy" . "The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:\n\n- US Approved Drugs\n- Marketed Drugs\n- Investigational Drugs\n- Other Substances"^^ . . . . . . . . . . "http://mlcommons.org/croissant/$1"^^ . . "BioPortal Prefixes" . . . . "false"^^ . . . . . "^RPCEC\\d+$"^^ . . "life science" . . "Langua aLimentaria Thesaurus" . "^\\d+$"^^ . "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"^^ . "Serhii Nazarovets" . "https://metazoa.ensembl.org/id/$1"^^ . . . . "https://www.kyinno.com/?s=$1"^^ . "Costal and Marine Ecological Classification Standard" . . . . "structural biology" . . . . "http://ecoportal.lifewatch.eu/ontologies/$1" . . . "CTCAE" . . "exac.gene" . . . "Thomas Lütteke" . . . "^\\d{16}$"^^ . . . . "graingenes.reference" . . . "false"^^ . . . "^[0-9a-f\\-]+$"^^ . "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"^^ . "Ada Hamosh" . "phenotype" . "bioschema" . . . . . . . . "^[A-Za-z-0-9_]+(\\@)?$"^^ . . . . . . . "http://stormo.wustl.edu/ScerTF/details/"^^ . "Data Quality Vocabulary" . "geography" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ecology"^^ . . "http://purl.obolibrary.org/obo/OPL_"^^ . . . "0000947"^^ . . "ricenetdb.gene" . "https://bioregistry.io/cadsr:"^^ . . . "sweet.propfr" . . "https://en.wiktionary.org/wiki/$1"^^ . "http://sweetontology.net/stateStorm/$1"^^ . "BioAssay Ontology" . "cmpo" . "10142"^^ . "http://purl.obolibrary.org/obo/MFMO_$1"^^ . "ontology" . "resource metadata" . . "false"^^ . . "researcher" . . . . . . . . "UMLS_ICD9CM_2005_AUI" . "An ontology representation of the LIPIDMAPS nomenclature classification."^^ . . "biomedical science" . . "^\\d+\\-\\d+\\-\\d+$"^^ . "https://www.biocatalogue.org/services/"^^ . . . "SKOS-Modellierung des Thesaurus FINDEX Raum des Fraunhofer-Informationszentrums Raum und Bau IRB"^^ . . "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information."^^ . . . "The Experimental Measurements, Purposes, and Treatments ontologY (EMPTY) is a structured vocabulary designed to capture and standardize the scientific reasoning behind experimental measurements. It addresses a critical gap in existing metadata standards, which primarily focus on technical specifications rather than scientific intent. The ontology provides a common language to express why a measurement was taken and the conceptual conditions under which it should be interpreted. By focusing on experimental purposes and treatments, EMPTY is designed to significantly improve the findability, interoperability, and reusability of scientific data. This enables researchers to discover relevant datasets for meta-analyses and cross-disciplinary research based on shared scientific goals. (from https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2753)"^^ . . . . "MultiCellDS Digital Cell Line" . "vaccines" . . "iirdsSoftwareDomainEntity"^^ . . . _:N7a4a11c10afa46569a4bb922d8cea8d9 "NLM Customer Service" . "obo" . "false"^^ . "transgene" . "obo" . "^H\\d+$"^^ . . . "biomedical science" . "http://aber-owl.net/ontology/$1/#/Browse/" . . . "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG"^^ . . "phytozome.locus" . . . . . . . . "AirSpace"^^ . . "groom@ccdc.cam.ac.uk" . . . "Earth Metabolome Ontology" . . . "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC="^^ . . . "This resource is about projects in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]"^^ . . . . . "SitEx" . "biology" . "phenotype" . . . "omid" . . "Sumir Pandit" . . "bioinformatics" . . "https://grch38.togovar.org/variant/$1"^^ . . . . . . "CutDB" . "https://purl.org/nfdi4plants/ontology/dpbo/DPBO_$1"^^ . . . . "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1"^^ . _:N369c564aef2d426c94fbec31e9765487 . . "ontology" . "Time Zone" . "AntWeb" . . "KonsortSWD" . "false"^^ . "^PGS[0-9]{6}$"^^ . . . "11084"^^ . "mint" . . . . "http://sweetontology.net/propIndex/"^^ . "^(c|k)\\d{7}$"^^ . "Tim Beck" . . . "protein" . "Permission"^^ . . "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan."^^ . . . "dandi" . . "Animal TFDB Family" . "engineering" . "https://cropontology.org/rdf/CO_326:"^^ . . "SWEET Ontology Property Space Height" . . . . "geosparql.function" . "false"^^ . "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines)."^^ . "false"^^ . . . . . . "^\\d{7}$"^^ . "0000006"^^ . . . . "false"^^ . . . . "sohur" . . . . "https://sargon-n5geh.netlify.app/ontology/1.0/object_properties/"^^ . . . . . . . "false"^^ . "tchen@forsyth.org" . "primary health care" . . "bioRxiv" . . "ICD-11" . . . . "GLAndersen@lbl.gov" . "https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/$1"^^ . . . . . . "A controlled vocabulary to support the study of transcription in the human brain"^^ . . . "SWEET Ontology Phenomena Ocean Coastal" . . "food" . . . "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$"^^ . . "literature" . . . . . . . . . . . "phosphosite.protein" . "Pfam protein family" . "ModelDB concept" . . "^\\w+$"^^ . . . "prefLabelGVP"^^ . . . . . . . . "r@iannel.la" . . . "^\\d{4}-\\d{3}[\\dX]$"^^ . . . . "benjamin_gyori@hms.harvard.edu" . . . . . "integbio" . "Raja Mazumder" . . . . "false"^^ . . "Center"^^ . . . . "ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems."^^ . "chempro.competitor" . . . "biomedical science" . . "http://purl.obolibrary.org/obo/COVIDO_"^^ . . "iot" . . . . "http://sweetontology.net/matrIndustrial/"^^ . . "Uberon" . . "epidemiology" . . . . "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1"^^ . . . . . "obo" . . . "suprabank.buffer" . . "Identifies the type of address entered as contact information for an individual or an organization."^^ . . "http://data.europa.eu/esco/occupation/$1"^^ . . . . . . . . "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information."^^ . "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download."^^ . "ecology" . . . "^[a-zA-Z0-9-]+$"^^ . . "bgee@sib.swiss" . "^[0-9A-Za-z\\-.\\+]+$"^^ . "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions."^^ . . "pharmgkb.pathways" . . "sweet.repm" . . . "life science" . "disease" . "false"^^ . "ubprop" . "John Cottrell" . "BAO" . . _:Nd0b09e58073b4e0b8e512e0bef14a801 . . . . . . "Higher Education Resource Types" . "phenomena" . . "genome" . "^\\d+$"^^ . "odamexplorer" . . . . . "https://www.biolegend.com/Default.aspx?ID=6664&productid="^^ . . "Digital Construction Occupancy" . "bibliometrics" . "false"^^ . . "false"^^ . . "phylogenetics" . . "http://data.europa.eu/bkc/notation_"^^ . "Gene Normal Tissue Expression" . . "earth sciences" . . "0000111"^^ . "ontology" . . . . "https://www.iedb.org/reference/"^^ . "^\\d+$"^^ . . . . . . . . . . . . . . . "http://www.bigdatau.org/schema#$1"^^ . . . "HorizontalCoordinateSystem"^^ . . . . "traffic engineering" . "^[A-Za-z][A-Za-z0-9]+$"^^ . "National Library of Medicine Catalog" . "https://data.chembiosys.de/studies/"^^ . . . . "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$"^^ . "^\\d{5,}$"^^ . . "Ensembl Gene" . . . "http://purl.obolibrary.org/obo/RO_$1"^^ . "false"^^ . . . "subject agnostic" . . "false"^^ . . . . . . . . . . "Provisional Cell Ontology" . "experimental measurement" . . . . . "ontology" . . . "0000080"^^ . . . . . "life sciences, biology" . . "genome" . "^C?\\d+$"^^ . "^\\d+$"^^ . . . . . . . "https://bioregistry.io/skm:"^^ . . "text mining" . . "engineering" . "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId="^^ . "File inside StoreDB at University of Cambridge"^^ . "1000003"^^ . . . . . "http://www.whocc.no/atcvet/atcvet_index/?code="^^ . . . . _:N38213533bc50447fa88e9ee502dbc62b "Bert Van Nuffelen" . . . . . "An ontology representing the model card structure, he aim of this work is to describe machine learning models to communicate information about specific details about the model (trade offs, intended users, licensing, etc.). "^^ . "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . . . "0000080"^^ . "Asthenosphere"^^ . "NanoParticle Ontology" . . . . "true"^^ . . "miriam.resource" . . . . . "bkc640"^^ . . . "B-5720-2018"^^ . . "biochemistry" . "pathways" . "bioschemas" . . . "NIF Standard Ontology: Brain Regions" . "kdbirp" . "EAWAG Biocatalysis/Biodegradation Database rule" . . "false"^^ . . "swisslipids" . "NASA Open Science Data Repository Mission" . "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology."^^ . "http://sweetontology.net/reprTimeDay/"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Earth Reference"^^ . . . . . . . "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems."^^ . . . "Karen R. Christie" . "NIF Standard Ontology: External" . "MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA)."^^ . . "PR" . "http://purl.obolibrary.org/obo/MI_$1"^^ . . . . "https://www.genecards.org/cgi-bin/carddisp.pl?gene="^^ . . . "MediaDive Medium" . . . "Repository of packages for the R programming language"^^ . "PST_100013"^^ . . . . . "obo" . "antimicrobial agent" . . "Clinical Trials Information System" . "false"^^ . "http://purl.uniprot.org/annotation/VAR_$1"^^ . . _:N1f5819abd9154291854cb3ab971b0d75 "Julian Seidenberg" . "false"^^ . . . "^\\d{7}$"^^ . . . . "A dataset in the ChemBioSys data platform"^^ . . "SWEET Ontology Property Index" . . . . . "life science" . "https://www.ebi.ac.uk/intact/search?query="^^ . . "CoyPu Ontology" . . . . . "https://ocid.ontochem.com/prefname?ocid=$1"^^ . . . . "false"^^ . . . . . "ontology" . . . . "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc."^^ . . . . "ecacc" . "0000634"^^ . "Zebrafish anatomy and development ontology" . . "version Dec 2019"^^ . . . "sweet.repsc" . . . "stri"^^ . "doqcs.model" . . "http://erop.inbi.ras.ru/result2.php?PepName=$1"^^ . "swan" . "https://gitlab.com/"^^ . . . . "emg" . "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip"^^ . "lcnafid" . . "false"^^ . "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$1"^^ . . "OMA Protein" . . . . "false"^^ . "ontology" . "pmdb" . . "EDCC Taxonomy" . . "virmirdb" . . . "biodiversity" . "false"^^ . "true"^^ . "sweet.phatmow" . . "aop.relationships" . "^\\d+$"^^ . "false"^^ . . "PD10000"^^ . "molecule" . "upper level" . "person" . . . "^(E|D|S)RR[0-9]{6,}$"^^ . "taxrank" . "https://cellmodelpassports.sanger.ac.uk/passports/"^^ . . "Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses."^^ . . . . . . . . . "Guide to Pharmacology Target" . "^[A-Za-z0-9\\-\\_]+$"^^ . "https://cbcb.cdutcm.edu.cn/AGD/plant/details/?id=$1"^^ . "http://zbw.eu/stw/thsys/"^^ . . "nfdi4chem" . . . . . . "None"^^ . "Medical Action Ontology" . . "Funding, Research Administration and Projects Ontology" . . . . . . . "sweet.reagcont" . "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources."^^ . "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . "systems biology" . "false"^^ . . . . . "biomedical science" . . "http://sweetontology.net/reprTimeDay/$1"^^ . . "ruth.duerr3@gmail.com" . "http://www.geneontology.org/formats/oboInOwl#"^^ . . . "false"^^ . . . . "nfdi4chem" . "CNBG_0001"^^ . "dockerhub.user" . "Platform Material Digital Core Ontology" . "12345"^^ . . "The cell line vocabulary inside FlyBase"^^ . "Pennsieve" . "interaction" . "project management" . "The AAT includes generic terms, and associated dates, relationships, and other rich information about concepts related to or required to catalog, discover, and retrieve information about art, architecture, and other visual cultural heritage, including related disciplines such as archaeology and conservation. Visual works include not only visual cultural works classified as \"art\" according to Western aesthetics, but also utilitarian and ceremonial works. Terminology may be used for work types, roles, materials, styles, cultures, techniques, subject, etc., so long as terms are within the defined scope of AAT. [from https://www.getty.edu/research/tools/vocabularies/aat/aat_faq.html]"^^ . . . . . "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world."^^ . "John Beverly" . "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/"^^ . . . . . . . "ADA"^^ . . . . "false"^^ . . . . "https://www.kegg.jp/entry/"^^ . . "https://bcrj.org.br/pesquisa/?search="^^ . . . . . "Dynamic Ecological Information Management System - Site and Dataset Registry - Sensor" . . . "sosttf" . . "K00001"^^ . "https://www.osti.gov/biblio/"^^ . . . . . "false"^^ . "idog" . . . "The FTOnto enables reseachers to sematically describe a physical fischertechnik factory simulation environment. This is archieved by aligning concepts from MASON and SOSA with own concepts. Furthermore the FTOnto can capture knowledge about semantic web services which are used to interact between the service-layer and the cyber-physical layer in a cyber-physical production system. This includes precondition which have to be met before a webservice can be performed, postconditions which check if the webservice execution was performed successfully and effects which describe the changed state of the domain after performing a service. [from homepage]"^^ . . . "John L. Markley" . . "RNA ontology" . . . . "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$"^^ . _:N5ec70726f2514e8496a17145644fccf0 "HL7 Support" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System"^^ . "c4o" . . . "Michael Feolo" . "http://www.semanticdesktop.org/ontologies/2007/08/15/nao#$1"^^ . "ICEberg cis-integrative and mobilizable element" . . "anatomy" . "false"^^ . . . . . . . "https://www.w3.org/2019/wot/hypermedia#"^^ . . "Gene"^^ . "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1"^^ . . . "https://biopragmatics.github.io/providers/cemo/$1"^^ . "Coleoptera Anatomy Ontology" . . "http://cutdb.burnham.org/relation/show/$1"^^ . "Dynamic Ecological Information Management System - Site and Dataset Registry - Activity" . "SWEET Ontology Phenomena Ecology" . . . "smoxon@lbl.gov" . "http://www.chemspider.com/Chemical-Structure.$1.html"^^ . "http://purl.obolibrary.org/obo/MS_"^^ . "KEGG Metagenome" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Animal"^^ . . "Upinder S. Bhalla" . . "gecko" . "https://www.worldcat.org/oclc/$1"^^ . . . . "false"^^ . "false"^^ . . . "cog.cluster" . "https://civicdb.org/links/gene/$1"^^ . . . . "immunology" . "ontology" . . "https://portal.hubmapconsortium.org/browse/dataset/$1"^^ . . . "0000001"^^ . . . . . . "The European Genome-phenome Archive (EGA) is a global network for permanent archiving and sharing of personally identifiable genetic, phenotypic, and clinical data generated for the purposes of biomedical research projects or in the context of research-focused healthcare systems. Jointly managed by the European Bioinformatics Institute (EMBL-EBI) in Cambridge (UK) and the Centre for Genomic Regulation (CRG) in Barcelona."^^ . . "An ontology encoding the core metadata based on the Intelligent Information Request and Delivery (iiRDS) standard"^^ . . . "The Extensible Observation Ontology" . "chemistry" . "false"^^ . "decides"^^ . . "https://mycobrowser.epfl.ch/genes/$1"^^ . "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . "http://www.w3.org/2006/vcard/ns#"^^ . "obo" . "digitalconstruction.lifecycle" . . . . . "https://www.geonames.org/"^^ . "164750"^^ . . . . "protein" . "defaultLanguage"^^ . . . "https://model.geneontology.org/$1"^^ . . "obo" . . "hybrid" . . "false"^^ . . . "ontology" . . . "Immune Epitope Database MHC Restrictions" . . . . "http://sweetontology.net/phenGeol/"^^ . . . "false"^^ . . . "chembiosys.publication" . "uniprot.ptm" . . "The BONSAI ontologies provides elements of description for product footprint concepts defined in the bonsai.uno data base"^^ . . . . . . "atmosphere transport" . "http://rs.tdwg.org/acsubtype/$1"^^ . . "medicine" . . "duo" . . "false"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena"^^ . "multicellds.cell_line" . . "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."^^ . "https://cropontology.org/rdf/CO_331:"^^ . "Arc"^^ . . "Jeffrey Wong" . . . "false"^^ . "false"^^ . . . . . "stato" . "Health Procedure Ontology" . . "0000046"^^ . "life sciences, biology" . "false"^^ . . "NCITt" . . "^\\d+$"^^ . . _:Ndd2c985480434017bb56876ef0717497 "UK Food Standard Agency" . . . . "http://bioportal.bioontology.org/ontologies/$1"^^ . "true"^^ . "1981638"^^ . . . . "true"^^ . . . "false"^^ . . . "ICD9CM" . . "life science" . "Kim Durante" . "https://ice.ntp.niehs.nih.gov/api/v1/search?chemid=$1"^^ . . . "https://raid.org/$1"^^ . "artificial intelligence" . "Disease Drivers Ontology" . . "Saccharomyces Genome Database" . "false"^^ . "Ribocentre is designed to contain comprehensive information of all natural ribozymes."^^ . . "false"^^ . "100101"^^ . "lincs.data" . . . . . . "The CIDOC Conceptual Reference Model (CRM) is a theoretical and practical tool for information integration in the field of cultural heritage. It can help researchers, administrators and the public explore complex questions with regards to our past across diverse and dispersed datasets. The CIDOC CRM achieves this by providing definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation and of general interest for the querying and exploration of such data. Such models are also known as formal ontologies. These formal descriptions allow the integration of data from multiple sources in a software and schema agnostic fashion. [from homepage]"^^ . . "C_AA001108.1"^^ . "https://bioregistry.io/hssp:"^^ . . . "The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections."^^ . "M77F7JM"^^ . . "metaproteomics" . . . _:N80bf972ac8de426fbf89216e29d61ef4 "pance.panov@ijs.si" . . "https://osdr.nasa.gov/bio/repo/data/studies/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Operation"^^ . . "Sensors in DEIMS SDR"^^ . "Joint Genome Institute Proposals" . . "Genotype Ontology" . . . . . "https://data.who.int/countries/$1"^^ . . . . . . "https://data.gesis.org/gesiskg/schema/$1"^^ . "1a05"^^ . "https://bioregistry.io/metaregistry/cellosaurus/$1"^^ . . "^\\d{7}$"^^ . . "genome" . . "https://data.chembiosys.de/organisms/"^^ . "false"^^ . "cidoc.crm" . . "http://open-services.net/ns/core#"^^ . "nucc.taxonomy" . . . . "Antibiotic resistance genes and mutations"^^ . . . . "Identifier of an entry from the AAindex database."^^ . . . "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match."^^ . . . "ProDom" . . "^\\d+$"^^ . "false"^^ . . . . . "reagent" . "semantic web" . "lw" . . . . . . . "Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]"^^ . "http://www.informatics.jax.org/accession/MGI:$1"^^ . "social and behavioural science" . . . . . . . . "obo" . "http://rdfs.org/sioc/swan#$1"^^ . . . "shareloc" . . "false"^^ . . . . "sweet.realv" . "https://vectorbase.org/gene/$1"^^ . . . "chromium"^^ . . "Oryzabase Gene" . . . . . . . . "FerroLigandDB" . . . "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors."^^ . . . "quality" . . . "2-s2.0-0030770923"^^ . . "icd10pcs" . "imaging" . . . . . "http://modelseed.org/biochem/reactions/"^^ . "CohesinDB - cohesin-related chromatin loop" . . . "r376"^^ . . . . "https://bioregistry.io/proteomicsdb.protein:"^^ . . . "genomics" . . "false"^^ . "Global Trade Alerts Ontology" . . "http://purl.obolibrary.org/obo/CHEBI_"^^ . . "false"^^ . "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . . "http://edamontology.org/data_"^^ . . . "MoDALIA Ontology" . "http://purl.obolibrary.org/obo/FBbi_"^^ . . . . "OMOP" . "biomedical science" . . . . "csp" . . "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies."^^ . "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines."^^ . . "UniProtKB-KW" . . . "Thing Description Ontology" . . . . "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016"^^ . "56586"^^ . . "false"^^ . "Mirjam Stappel" . . . . . "PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored."^^ . "https://gen3.theanvil.io/ga4gh/drs/v1/objects/"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Biology"^^ . "hinv.protein" . . . "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies."^^ . . "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1"^^ . . . . . . "InChIKey" . "classification" . "eukaryotic" . . . "Activation"^^ . . . . "neurology" . . . "SNOMEDCT_US_2023_10_01" . . "^IRCT\\d+N\\d+$"^^ . "developmental biology" . . . . "ontology" . . . . . . "The reviewer of a prefix" . "sostrb" . . . . . "molecule" . "https://e-cyanobacterium.org/bcs/rule/$1"^^ . . "sioc.types" . . . . . . . "false"^^ . . . . "hsa-let-7a-2-3p"^^ . . . "database" . "gene" . "microbiology" . . "Open Tree of Life" . "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/"^^ . "bila" . . . "^ERM[0-9]{8}$"^^ . "false"^^ . "ontology" . . "disease" . "SWEET Ontology Process Chemical" . . . "http://purl.obolibrary.org/obo/TO_$1"^^ . . . "sorelsp" . . "kegg.compound" . "http://purl.obolibrary.org/obo/ONE_$1"^^ . . "http://purl.uniprot.org/annotation/$1"^^ . . . . . . "http://purl.enanomapper.org/onto/ENM_$1"^^ . . "stian@soiland-reyes.com" . . "0001"^^ . . "Data Science Ontology" . "http://sweetontology.net/phenHydro/"^^ . . . "This mini-ontology contains classes and instances for each version of the licenses that are commonly used in software projects, particularly open source software projects. The URI's for each are the canonical URI's for that license (where they exist)."^^ . . "154022"^^ . "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts."^^ . . . . . . "Summary Statistic Type" . . . "Sheng-Da Hsu" . . . . . . . . . . "false"^^ . . . . . . "https://bioregistry.io/mesh.2012:"^^ . "pathway" . "false"^^ . "Integrated Microbial Genomes Gene" . . . . "http://xmlns.com/foaf/0.1/"^^ . . . "The Industrial Data Ontology is an upper ontology for industrial data, inspired by the ISO 15926-2 data model and Basic Formal Ontology."^^ . "engineering" . . "organic chemistry" . . "david.gloriam@sund.ku.dk" . "virology" . "false"^^ . . . . . "vertebrate" . "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets"^^ . . . . . . . . "^\\d+$"^^ . . "Ontological Interpretations for Web Property Graphs" . "biomedical science" . . "false"^^ . . "01013"^^ . "multicellds.collection" . . _:N369c564aef2d426c94fbec31e9765487 "Josef Hardi" . "false"^^ . . . "false"^^ . "dispositions" . "false"^^ . "coypu" . . "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID="^^ . . . . . . . . . "chemical" . . . . . . "Database of Macromolecular Interactions" . . _:N1f41a041529148678b06b28da2b4de20 "First DataBank Customer Support" . "whimar@ohsu.edu" . "^\\d+$"^^ . . "diabetes" . . "0000091"^^ . "SoyBase is a repository for curated genetics, genomics and related data resources for soybean."^^ . . . . "false"^^ . . . . . "BioProject" . "LNC" . "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome."^^ . . . . . . "f.quaglia@ibiom.cnr.it" . . . "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:"^^ . "Adverse Outcome Pathway Ontology" . "1915"^^ . "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1"^^ . . "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid="^^ . . "Suggested Ontology for Pharmacogenomics" . . "glasner@svm.vetmed.wisc.edu" . . . . . . . "^[A-Za-z]+$"^^ . . . . . "false"^^ . . "sweet.repdf" . "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum."^^ . "dockerhub.repo" . . . "^OSC\\d{4}$"^^ . . . . "Activity"^^ . . . "^\\d{7}$"^^ . . . "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . . "https://string-db.org/cgi/network?identifier=$1"^^ . . . . . . . . "ndc" . "http://purl.obolibrary.org/obo/COLAO_$1"^^ . "https://vocabularies.cessda.eu/vocabulary/CountryNamesAndCodes?lang=en#code_$1"^^ . . . . "Suzi Aleksander" . . "sweet.repsf" . "genome" . "kim.esv" . . . . . . . "http://sweetontology.net/stateRoleRepresentative/$1"^^ . . . . . . "reaction data" . . . . "false"^^ . . . . . . "ThermoFisher is a life sciences supply vendor."^^ . "false"^^ . "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1"^^ . "expression" . . . . . "false"^^ . . . "https://www.vmh.life/#gene/"^^ . "aceview.worm" . "flymine.chromosome" . . "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE)."^^ . . . . . "YGOB is an online tool for visualising the syntenic context of any gene from several yeast genomes."^^ . . . . "^\\d{7}$"^^ . . "nfdi4ing" . . . "https://arxiv.org/abs/"^^ . . . . "syn" . . . "nfdi4ing" . . "false"^^ . "https://w3id.org/sulo/"^^ . . "false"^^ . . "21692"^^ . . . "false"^^ . "CategorialBibliometricData"^^ . "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits."^^ . "http://www.rcsb.org/ligand/"^^ . . . "Ontology of Biological Attributes" . . "AirTraffic"^^ . . . . . "genome" . . "false"^^ . . . . . "life science" . . . "https://bartoc.org/" . "open educational resources" . . . . . "GeneCards Gene" . "AnnualAverage"^^ . "http://sweetontology.net/propTimeFrequency/"^^ . . "https://nrid.nii.ac.jp/ja/nrid/10000$1"^^ . "lindsey.anderson@pnnl.gov" . "false"^^ . . . . . . "tropicalis" . . "Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars."^^ . . . "http://purl.obolibrary.org/obo/GALLONT_"^^ . . "diseases" . "feolo@ncbi.nlm.nih.gov" . "^\\w+$"^^ . "MolMeDB" . . . . "http://sweetontology.net/stateSpace/"^^ . "http://sweetontology.net/phenAtmoCloud/"^^ . "Time Ontology in OWL" . . "NCATS Drugs" . . . . . "botany" . "false"^^ . "project management" . . "has local unique identifier pattern" . . "Overview of Medical Research in the Netherlands" . "false"^^ . . "false"^^ . "http://multicellds.org/MultiCellDB/"^^ . . . . "SWAP Logic Ontology" . "false"^^ . "http://hpc-bioinformatics.cineca.it/fusion/cell_line/"^^ . "0010034"^^ . . "false"^^ . . "geology" . "A top-level concept scheme that enumerates different types of Learning Resource, designed to supplement existing more generic resource type schemes and which can support local extensions."^^ . . . . . "^(MNXM\\d+|BIOMASS|WATER)$"^^ . "http://vocabularies.wikipathways.org/wpTypes#"^^ . "SWEET Ontology Realm Hydrosphere Body" . "http://purl.obolibrary.org/obo/ENVO_"^^ . "^\\w+(\\.\\d+)?(\\.\\d+)?$"^^ . . . . "https://dialnet.unirioja.es/servlet/autor?codigo=$1"^^ . . "false"^^ . "2329"^^ . . "http://pombe.oridb.org/details.php?id="^^ . "rna" . . . "subject agnostic" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Aeolian"^^ . "false"^^ . "47"^^ . _:N9b6bbc428eb54ed28a0a7b923b19f531 "Patricia Brooks" . . "chemistry" . . "enzyme" . "https://guolab.wchscu.cn/AnimalTFDB4//#/family_summary/TF/"^^ . "Pierre Cosson" . . . . . "EntrezGene" . . . . "life science" . . . . . . . "phenotype" . . "obo" . "coypu" . . "ontology" . . . "https://www.ebi.ac.uk/gxa/experiments/"^^ . . "^HIT\\d{9}(\\.\\d+)?$"^^ . . . "systems biology" . . "nanosafety" . . . "http://sweetontology.net/prop/$1"^^ . "MarRef" . . . "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways."^^ . . "https://www.uniprot.org/diseases/"^^ . . "pigqtldb" . "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities."^^ . "hasExport"^^ . "Ontology representation of the [International Committee on Taxonomy of Viruses (ICTV)](https://ictv.global/) for the [EVORA project](https://evora-project.eu/)"^^ . . . "Swiss National Clinical Trials Portal" . . "gene expression" . . . . "^\\d{8}$"^^ . "ontology" . . . . . . . "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products."^^ . "Q0VCA6"^^ . "This vocabulary extends the data cube vocabulary to support publication of statistical data in RDF, using an information model based on SDMX"^^ . . . . . . "sweet.propsp" . "obo" . "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id="^^ . " protectedland" . . "Library of Congress Relator" . . . . . "soreacz" . . . "human" . . "^\\d+$"^^ . . "http://purl.obolibrary.org/obo/FBcv_"^^ . "SWEET Ontology State Time Cycle" . "http://uri.neuinfo.org/nif/nifstd/birnlex_$1"^^ . . . . . "oer" . "genomics" . . . . . . . "taxonomy" . . . "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank."^^ . . . "maria.taboada@usc.es" . "engineering" . . "Surjeet Kumar Arya" . . . . "https://www.cellbiolabs.com/search?keywords="^^ . . . . "icdom:8500_3"^^ . . "PRIDE Project" . "http://www.wikidata.org/entity/$1"^^ . "https://saref.etsi.org/saref4auto/"^^ . "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."^^ . . . "Symptom Ontology" . . "Vertebrate trait ontology" . . "molbic.compound" . . "engineering" . . . "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . . "Daniel.Kahn@toulouse.inra.fr" . "environment" . . . "false"^^ . . "false"^^ . . "physiology" . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Decision"^^ . . . . "anatomy" . . "false"^^ . . . . . . "Cellosaurus identifeirs for publications, like Pubmed"^^ . . . . . "MITE0000001"^^ . . "http://sideeffects.embl.de/drugs/$1"^^ . . . . "flu" . "http://purl.obolibrary.org/obo/HABRONATTUS_"^^ . "health science" . . . . "Database containing promotor sequences found in Saccharomyces cerevisiae."^^ . . . "Gene Ontology Causal Activity Model" . "1755"^^ . . . "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery."^^ . "false"^^ . "Eleni Ilkou" . . "https://wildlive.senckenberg.de/wlmo/"^^ . . " glacialland" . "http://purl.obolibrary.org/obo/VTO_"^^ . . . "Resource for the community to store, retrieve, search, reference, and reuse CellML models."^^ . . "Document Components Ontology" . . "obib" . . "http://sweetontology.net/phenEcology/"^^ . "0000639"^^ . "frim1"^^ . "https://vocabularies.cessda.eu/vocabulary/Variables-Relations?lang=en#code_$1"^^ . . . . "bigg.reaction" . . "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . . "Age"^^ . "http://data.crossref.org/fundingdata/funder/10.13039/"^^ . . . . "genome" . "Natural Product-Drug Interaction Research Data Repository" . . "mental health" . . . "false"^^ . . "Q5BJF6-3"^^ . . . "SWEET Ontology Human Environmental Standards" . . . "lexvo.ontology" . . . "00000014"^^ . "Information Resource Registry" . . . . . . . . "false"^^ . "3075966"^^ . "This is a vocabulary collection utilized by XHTML Family modules and document types using XHTML Modularization, including XHTML Role and XHTML + RDFa as defined in rdfa-syntax. The XHTML specifications are developed by the W3C XHTML 2 Working Group as part of the W3C HTML Activity. [from homepage]"^^ . . . . "parentFeature"^^ . "0000001"^^ . "The midlevel energy ontology (MENO) is a BFO-based midlevel ontology. It comprises the concepts for energy qualities, energy-based dispositions and energy-driven transformation and transfer processes and their interrelations. It has the goal to provide an upper level structure for these concepts for energy-related domain ontologies."^^ . "ontology" . "preprints" . "true"^^ . "false"^^ . "https://matrixdb.univ-lyon1.fr/association/"^^ . . . . "health science" . . . "Altitude"^^ . "KEGG COMPOUND" . . "ans.educationlevel" . . "virsi1909"^^ . . . . . "microbiology" . . "ArrayExpress" . . . "https://europepmc.org/article/AGR/$1"^^ . "nasaosdr.subject" . "false"^^ . . . "http://purl.obolibrary.org/obo/PSDO_"^^ . . "Ascomycete phenotype ontology" . . . . . "https://bioregistry.io/pesticides:"^^ . . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships"^^ . . "dylan.mcgagh@magd.ox.ac.uk" . . "447860"^^ . "false"^^ . . . . . . . "genotype" . . . . "^\\d+$"^^ . . . . . . "CN970821"^^ . . . "http://purl.obolibrary.org/obo/AAO_$1"^^ . "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC."^^ . . "ubio.namebank" . . . . . "true"^^ . . . . "Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types."^^ . . . "CGH Data Base" . "http://cor.esipfed.org/ont/earthcube/AUT_$1"^^ . . "host" . "Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes."^^ . "tdwg.vms" . . . "CDBL00540805"^^ . . . . _:Naf12c26b434f40d1b344470838440ced "mohamed-el-amine.boukerfa@inrae.fr" . "John Wieczorek" . "AdvectionFog"^^ . . . . "https://www.ebi.ac.uk/QuickGO/GProtein?ac="^^ . . . "https://onderzoekmetmensen.nl/en/trial/"^^ . _:N7796c59bc4b34521bcdd078c6c0b76c3 "William Klimke" . "sweet.repmf" . "https://data.chembiosys.de/strains/"^^ . "https://www.iedb.org/assay/$1"^^ . . . . . . . "0000547"^^ . . "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId="^^ . "mam@lbl.gov" . . . . "CATH Protein Structural Domain Superfamily" . "nathan.baker@pnnl.gov" . "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information."^^ . "Getty Iconography Authority" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Fluvial"^^ . . . . "life sciences" . "false"^^ . . "Stephen Randal Voss" . "true"^^ . . "pathway" . . "http://autism.mindspec.org/GeneDetail/$1"^^ . . . "false"^^ . "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources."^^ . . . . . "kegg.reaction" . . . "e-yasugi@umin.ac.jp" . "proteomics" . . . . _:Ndd1278daca154152afd75b3c30db2337 . . . . . . "agriculture" . . _:N6a7028aec9ae4189bbe053d3d8a22017 "takeya.kasukawa@riken.jp" . . . . "protein" . "Bgee gene" . . . "state visibility" . . "life science" . . . "false"^^ . . . "realm" . "AD834"^^ . "Nicole Vasilevsky" . . "obo" . . . "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1"^^ . "^\\d+$"^^ . "bioregistry"^^ . . "^FOOD\\d+$"^^ . . . . . . "rrrc" . . . . "Selventa legacy chemical namespace used with the Biological Expression Language"^^ . "https://www.ebi.ac.uk/metagenomics/analyses/$1"^^ . "metabolites" . . . . . "https://osdr.nasa.gov/bio/repo/data/payloads/$1"^^ . "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1"^^ . . . . . . . "false"^^ . "http://modelseed.org/biochem/compounds/"^^ . "chemical" . . "d4e2515"^^ . "katy@indiana.edu" . . . . "true"^^ . "https://dcmi.github.io/openwemi/ns#$1"^^ . . . "UK Provider Reference Number" . . . "carrine.blank@umontana.edu" . "03yrm5c26"^^ . . . . . . . . "http://sweetontology.net/matrWater/"^^ . . . . "ddc" . . . "interaction" . "Observation"^^ . . "2011488555"^^ . . "ontology" . . . . _:N1514816e62e3492fb0ccaa6a158dc699 "Qiong Gu" . "ontology" . "false"^^ . _:N1309e91613dc48c7a5946468759137b4 "Steve Baskauf" . . "sohuc" . . . . . . "http://www.vbase2.org/vgene.php?id="^^ . . . . "MESH_SUPPLEMENTAL_RECORD_UI" . . "false"^^ . . . . . "gene" . . "agriculture" . "ontology" . "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . . "A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces."^^ . "http://uri.neuinfo.org/nif/nifstd/$1"^^ . . "http://purl.obolibrary.org/obo/MFOMD_$1"^^ . _:Ne27b0f60253544b28f1c00d11488e22b "maxime.lefrancois@emse.fr" . . "http://www.cidoc-crm.org/cidoc-crm/$1"^^ . . "https://id.loc.gov/vocabulary/languages/$1"^^ . . "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1"^^ . . "https://publons.com/publon/$1"^^ . . . . "http://scipion.i2pc.es/ontology/CRYOEM_$1"^^ . "abs" . . "economics" . . . "The Recommendation Ontology specification provides basic concepts and properties for describing recommendations on/for the Semantic Web."^^ . "http://bimerr.iot.linkeddata.es/def/building#$1"^^ . . . "https://www.ncbi.nlm.nih.gov/books/"^^ . "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis."^^ . . . . "http://www.tcdb.org/search/result.php?tc="^^ . "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources."^^ . . . . . . . "^\\d+$"^^ . "00000105"^^ . . . . "phipo" . "doi" . . . . "WD_Entity" . . . "http://syndromefinder.ncchd.go.jp/UR-DBMS/SyndromeDetail.php?winid=1&recid=$1"^^ . "false"^^ . "bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate."^^ . . "An identifier for a resource or metaresource." . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information."^^ . . "D.Schomburg@tu-braunschweig.de" . . . "http://virtualflybrain.org/reports/"^^ . . "http://purl.org/nexusformat/definitions/NeXusOntology#"^^ . "dmendez@ebi.ac.uk" . "soreps" . "transcript" . "sequence" . "nfdi4energy" . . . . "0"^^ . . . . . . "joerg.overmann@dsmz.de" . . . "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid="^^ . . . . . "004126"^^ . . . . "false"^^ . "snp2tfbs" . . "nfdi4ing" . "mutation" . . . . . "The Cert Ontology" . . "4bbe3b53a985e999eb66fee3297ec3f8"^^ . . "patent" . . . "food chemistry" . _:Nb937b7cdfd0741a38f7e36aa0edcdcc5 . . . . . . . "life science" . . "geosparql" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Impact"^^ . . "true"^^ . . . . . . . "false"^^ . "^\\d{7}$"^^ . . "false"^^ . . . . . "panther.family" . "xml" . "http://www.ontologies.com/Ontology3197.owl#$1"^^ . . "http://uri.neuinfo.org/nif/nifstd/nlx_anat_"^^ . "A application driven Epilepsy Ontology with official terms from the ILAE."^^ . . . . . . "https://plants.ensembl.org/id/"^^ . . "^\\d+$"^^ . "alan.bridge@sib.swiss" . . . "PaxDb Protein" . . . . . "http://pepbank.mgh.harvard.edu/interactions/details/$1"^^ . . "^\\d+$"^^ . . "false"^^ . "16793"^^ . "identifier of a book in Dialnet"^^ . "The NLM Catalog provides access to NLM bibliographic data for journals, books, audiovisuals, computer software, electronic resources and other materials. Links to the library's holdings in LocatorPlus, NLM's online public access catalog, are also provided. [from homepage]"^^ . "https://biofactoid.org/document/$1"^^ . . . . "ChemBioSys Project" . . "000000341"^^ . . "pathway" . . . . "http://data.europa.eu/eli/ontology#"^^ . . "caripark@iastate.edu" . . . . . "biokc" . "fair" . . . . "http://sweetontology.net/matrNaturalResource/$1"^^ . "This is a vocabulary for educational sectors as used in the OER World Map (https://oerworldmap.org)"^^ . . "seconary school type" . . . . . . . "molecular" . . _:N1309e91613dc48c7a5946468759137b4 "steve.baskauf@vanderbilt.edu" . . . . . . "true"^^ . "false"^^ . . . "ClinGen Allele Registry" . "https://browser.planteome.org/amigo/term/PECO:$1"^^ . "sharkipedia.trend" . . . "https://biomarkerkb.org/canonical/"^^ . "massbank" . . "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information."^^ . . "40592-R001-100"^^ . . . "false"^^ . . "microscope" . "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$1"^^ . . . . "https://sed-ml.org/urns.html#language:$1"^^ . . "https://bioregistry.io/metaregistry/prefixcommons/"^^ . "Prefixes for ontologies relevant for the DataPLANT (i.e. the NFDI consortium for plants)" . "Identifies the type of telephone entered as contact information for an individual or an organization."^^ . "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records."^^ . . "https://molbic.idrblab.net/data/compound/details/$1"^^ . "https://biopragmatics.github.io/providers/pba/"^^ . . . . . "bervo" . . "https://unicarb-db.expasy.org/msData/"^^ . "bioinformatics" . "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO="^^ . . . . "CONSO00010"^^ . . "Tri©DB is a newly developed integrated platform functioning as a knowledge base and reporting system for cancer precision medicine. This platform harmonizes and mines cancer-related data from various aspects, presenting them on a centralized platform with enhanced accessibility, rich annotations, and robust analysis capabilities. The development of Tri©DB is aimed at meeting the needs of a broad range of researchers, thereby propelling both foundational and translational research in cancer precision medicine."^^ . . . . . . "nfdi4ing" . "Bitbucket is a Git-based source code repository hosting service owned by Atlassian."^^ . "phenotype" . "ontology" . "life science" . . . . . . . . . "https://ligandbook.org/package/"^^ . . "http://sabiork.h-its.org/newSearch?q=$1"^^ . "1"^^ . "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins."^^ . "ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc."^^ . "The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a thorough framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the information contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of inheritance and modularity. \"Inheritance\" means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. Modularity means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research."^^ . "togoid" . "gene" . "modularmassactionprimer"^^ . . . . . . . "Integrative and Conjugative Element Ontology" . "measurement" . "NeuronDB" . . "Bill Hogan" . . "G02681"^^ . . . . . . . . "Plant Phenotype Experiment Ontology" . . . . "The ESCO occupations pillar is built on ISCO-08 which serves as its hierarchical structure. ISCO-08 provides the top four levels for the occupations pillar and ESCO occupations are located at level 5 and lower. In ESCO, each occupation is mapped to exactly one ISCO-08 code. [from homepage]"^^ . . . "ncbi.gi" . . . "leafsnap" . "DataCite Ontology" . "https://www.disprot.org/idpo/IDPO:"^^ . "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information."^^ . . . "health" . "true"^^ . "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . . . . . . . . . . . "NONCODE v4 Gene" . . . . "false"^^ . . "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$"^^ . "@biopragmatics/curies"^^ . "false"^^ . . . "http://www.tdwg.org/standards/642"^^ . "Domain ontology for thin-film solar cells and related tandem solar cells. Contains relevant terms and concepts from BFO, IAO, UO, PATO, OBI, CHMO."^^ . . "false"^^ . . . . "1018"^^ . . . . "BRENDA Ligand" . "sopropm" . . "false"^^ . . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/"^^ . . . . . . "mmsl" . . "developmental biology" . . . "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id="^^ . "^\\d{7}$"^^ . . . . . . . . . "getty.att" . . . "BiogeochemicalCycle"^^ . "FAIR* Reviews Ontology" . "mbrochhausen@uams.edu" . "^\\d{5}$"^^ . . "region" . "Schema for the export of the Bioregistry as RDF"^^ . "https://cn.dataone.org/cn/v2/resolve/%7B$1%7D"^^ . . . . . . . . "false"^^ . "zoology" . . "^st\\d+$"^^ . . . . . . "This ontology extends the SAREF ontology for the Smart Lifts domain."^^ . "vaccine" . . . "Arc"^^ . . . . . . "A collection of graphics that relate to a theme"^^ . . "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."^^ . . . . "sweet.pho" . "pgxbs-kftva5zv"^^ . "00573"^^ . "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene."^^ . . . "SAREF4INMA: an extension of SAREF for the industry and manufacturing domain" . "http://sweetontology.net/relaPhysical/"^^ . "0000001"^^ . "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."^^ . . . "https://pephub.databio.org/"^^ . . . "Cell line collections (Providers)"^^ . . . "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language."^^ . . . "consulting" . . . . "Chemical Entity Materials and Reactions Ontological Framework" . . "118021"^^ . . "http://sweetontology.net/humanEnvirAssessment/$1"^^ . . . . . . . "Biotin_biosynthesis"^^ . . . . . . . "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas."^^ . "protein" . . "false"^^ . . . . "2966"^^ . "MINID Test" . "https://fairsharing.org/organisations/$1"^^ . "ontology" . "The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format."^^ . "https://terminology.tib.eu" . . . . . . . . . "daniel.gautheret@u-psud.fr" . . "^BD\\d[a-zA-Z0-9]+-[A-Za-z]-[A-Za-z]-[A-Za-z0-9]+$"^^ . . "http://sweetontology.net/matrNaturalResource/"^^ . "FlyBase Gene" . "sorelt" . . "relationship" . "Yosef Shiloh" . "1"^^ . . "selventa" . . . . . . "GPS_location"^^ . . . "false"^^ . "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature."^^ . . "^[A-Za-z_0-9]+$"^^ . "Isabel Sá-Correia" . . . "natural language processing" . . "https://www.cienciavitae.pt/"^^ . . . "^\\d+$"^^ . . "2116"^^ . . . . . "false"^^ . "false"^^ . "Cu.me.I1"^^ . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data."^^ . "engineering" . . "false"^^ . "ontology" . . "https://w3id.org/ccso/ccso#"^^ . "phylogenomics" . "false"^^ . . "energy engineering" . "ncats.bioplanet" . "EU Clinical Trials" . "2679240"^^ . "^\\d+$"^^ . "^[0-9]+$"^^ . . "8497"^^ . . . "Metabolic Atlas Metabolite" . . "https://sciprofiles.com/profile/$1"^^ . . . "Cell line collections (Providers)"^^ . . . "Shapes Constraint Language" . . . . "Electron Microscopy Glossary" . . . . . . "Al Kikhney" . "Response Unit" . . . . "true"^^ . "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#"^^ . . . . . . . "ncbi.assembly" . "pdro" . "sopropp" . "false"^^ . . "https://www.fung-growth.org/page/Display%20page%20FG/"^^ . . "obo" . "^[A-Z0-9][A-Z0-9-]*$"^^ . . . . "ChemSpiderID" . . "https://oprlm.org/proteins/"^^ . . "protocol" . "http://vocab.nerc.ac.uk/collection/P06/current/$1"^^ . . "0745-4570"^^ . . . . "jws" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space"^^ . . . . . "^\\d{7}$"^^ . "0002058"^^ . . . . "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact."^^ . "^MNEST\\d+$"^^ . . . . "sweet.phso" . "^\\d+$"^^ . . "cmo" . "false"^^ . "https://gtdb.ecogenomic.org/tree?r=$1"^^ . . "ontology" . "molecular chemistry" . . . . "Yoshiharu Y. Yamamoto" . "^\\d+$"^^ . _:N4b360f8603a34a90b05c02a2ff285f4c . "https://www.pgscatalog.org/pgs/$1"^^ . "MNXC15"^^ . . "^\\d{7}$"^^ . . . "quantitative genetics" . . . . . . "http://sweetontology.net/propSpaceDirection/$1"^^ . . "eclas" . "^\\d+$"^^ . "Neuronal cell types"^^ . . "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species."^^ . "materials" . . . . "https://rubygems.org/gems/"^^ . . "d001"^^ . "Academic Event Ontology" . . . . "DBG2 Introns" . "noncodev4.gene" . "http://purl.obolibrary.org/obo/WBbt_$1"^^ . . . "http://sweetontology.net/reprSpaceGeometry/$1"^^ . . "SpBase" . . "soreac" . "false"^^ . . "https://www.mavedb.org/#/experiments/urn:mavedb:"^^ . . "fungorum" . "TA14985"^^ . . "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view."^^ . "https://www.scopus.com/affil/profile.uri?afid=$1"^^ . "false"^^ . "linguistics" . . . . . "life science" . . . "mediadive.medium" . . . . . . . . . . "^EB\\d+$"^^ . . . "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$"^^ . . . . . . . . . "Scientific Information Retrieval and Exchange Network" . . . "Plant Environment Ontology" . "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$"^^ . . . "Jawahar Swaminathan" . . "http://www.iclc.it/details/det_list.php?line_id=$1"^^ . "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem."^^ . . . . "ontology" . . "Type of Instrument" . "jorvis@gmail.com" . . . . "http://sweetontology.net/propDimensionlessRatio/"^^ . . . "17254"^^ . "Gazetteer" . "https://nfdi4culture.de/ontology/CTO_"^^ . . . "http://sweetontology.net/phenEnvirImpact/"^^ . "mmmp:biomaps" . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Wave"^^ . "cnt" . "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid="^^ . . "^\\d{7}$"^^ . . "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1"^^ . "ontology" . . . . . "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." . . . . "bioinformatics" . . "ictv" . "KEGG Reaction" . . "obo" . "3"^^ . . . . . "sequence annotation" . "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#"^^ . "Glycosciences.DB" . . . "rnajunction" . "Category Scheme Election Studies" . . . "^FCB\\d{3}$"^^ . . "pharmacology" . . . . "Health Canada Clinical Trials Database" . . "^[a-z0-9]{5}$"^^ . "http://purl.uniprot.org/annotation/"^^ . . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Index"^^ . . . "Antoine Danchin" . "101"^^ . . . . . . . "1.1.1.1"^^ . . . "BitterDB Receptor" . "https://deims.org/locations/$1"^^ . "smpdb" . "^[1-9]\\d{0,5}$"^^ . . "Mental Disease Ontology" . "^\\d+$"^^ . . "Astrophysics Source Code Library" . "Etsuko Yasugi" . "The PIMO Ontology can be used to express Personal Information Models of individuals. It is based on RDF and NRL, the NEPOMUK Representational Language and other Semantic Web ontologies. This document describes the principle elements of the language and how to use them. (from homepage)"^^ . "ontology" . "http://purl.org/spar/scoro/$1"^^ . . "1.10.10.200"^^ . "Maize Trait Dictionary in template 5 - CIMMYT- September 2016"^^ . "suprabank.additive" . . . . . . . "Lindsay.Cowell@utsouthwestern.edu" . . . . "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN"^^ . . "^\\d+$"^^ . "Crates.io" . . "http://purl.obolibrary.org/obo/DOID_$1"^^ . "foodex2" . . . . . "Individual Organism Information Ontology" . "gene" . "This document describes the RDFS vocabulary description used in the Metadata Vocabulary for Tabular Data along with the default JSON-LD Context."^^ . . "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable"^^ . . _:Nef67f6212b804ee4b07f6731c7633260 . . . " coastalland" . . . . "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. "^^ . . "https://www.checklistbank.org/dataset/3LR/taxon/"^^ . "dbvar.study" . . . "MIMPS" . "dsm4" . . . . "protein" . . . "Big"^^ . . . . "^\\d+$"^^ . "RGD Disease Ontology" . . . "^\\d+-\\d+(-[A-Z])?$"^^ . "Randi Vita" . "broad" . . . . . . . "00000099"^^ . . "https://cropontology.org/rdf/CO_323:"^^ . . "aro" . . "http://www.antweb.org/specimen.do?name="^^ . "The 'Energy Market Roles' ontology module represents the energy market roles of energy agents. Additionally, it includes the consumer role, as it is reused in most of Smart Grid scenarios. This ontology module reuses the knowledge of the 'Actor' ontology module."^^ . "http://purl.obolibrary.org/obo/UO_"^^ . . . "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115="^^ . . "false"^^ . . "0001056"^^ . . "http://cerevisiae.oridb.org/details.php?id="^^ . . . . . . . "environment" . . . . . . . . . "false"^^ . "10.1621/vwN2g2HaX3"^^ . . . "trait" . "obo" . "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys."^^ . . . . . . "michelle.scott@usherbrooke.ca" . . . . . . "Amphibian gross anatomy" . . "developmental biology" . "An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy."^^ . "Allergome" . . "false"^^ . "https://w3id.org/dot#$1"^^ . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Climate Zone"^^ . "SWEET Ontology Property Time Frequency" . "http://antibodyregistry.org/AB_$1"^^ . "drug" . . . "International Generic Sample Number" . "false"^^ . . . "RepeatsDB Protein" . "https://radlex.org/RID/"^^ . . "edm.fibo" . . "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view."^^ . . . . "Toni Gabaldón" . "^\\d+$"^^ . . . "biomedical science" . . . "uc001rvw.5"^^ . . "life cycle stage" . . "transyt" . . "mesh.2012" . . . "ximbio" . "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications."^^ . . . "ontology" . . . . . "http://cor.esipfed.org/ont/earthcube/SFO_"^^ . . "https://bioregistry.io/gard:"^^ . . . . "plant phenotypes and traits" . "gfo" . "^\\d{7}$"^^ . . . . "Quinoa Ontology" . . . . "A vocabulary for cattle, chicken, horse, pig, and sheep breeds."^^ . "wicell" . "false"^^ . "ontology" . . "000009"^^ . . "tigrfam" . . "dg.6vts" . "http://purl.obolibrary.org/obo/BCO_$1"^^ . "ontology" . "conoserver" . . "PepBank Peptide Database" . . . _:N4f206d3bda0740c7b49ec4c8f3f7cd18 "wbug@ncmir.ucsd.edu" . "https://panoramaweb.org/$1.url"^^ . . . "chemistry" . "nucleotide" . . . . . . "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id="^^ . "^.{2,}$"^^ . . "http://wodaklab.org/iRefWeb/interaction/show/$1"^^ . "TopFind" . . . . . "nucleotide" . "http://sweetontology.net/propSpace/"^^ . "https://cthoyt.com/evr/"^^ . . . "^M\\d{4}$"^^ . "^ISRCTN\\d+$"^^ . . . "pathway" . "mosaic" . . "nfdi4chem" . . "gene expression" . . . "Ugis Sarkans" . "a.kikhney@embl-hamburg.de" . . "German University Subject Classification System" . "This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs"^^ . "adult" . . "1a24"^^ . . . . "drugs" . "http://purl.obolibrary.org/obo/AGRO_$1"^^ . "primary health care" . . . . . "ontology" . . "rebase" . . . "http://database.deepsolar.space:18080/dbs/nlfff/$1"^^ . "building design" . . . "^[A-Za-z0-9]+$"^^ . . . "762"^^ . "dictyBase" . . "ChEMBL tissue" . . . "sweet.reag" . . . . . . "circrna" . . "https://vocabularies.cessda.eu/vocabulary/CessdaPersistentIdentifierTypes?lang=en#code_$1"^^ . . . . "https://w3id.org/listdb/onto#"^^ . . "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . . . . . "fid move" . "CRW_00469"^^ . "^\\d+$"^^ . . . . . "^(ZINC)?\\d+$"^^ . . . . "Monique Zahn" . . . "ontology" . "Enzo Life Sciences is an antibody vendor."^^ . "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology."^^ . . . . "engineering" . . . . . . "chembiosys.tag" . . . . . "v1"^^ . . "http://sweetontology.net/realmLandTectonic/"^^ . "false"^^ . "http://purl.obolibrary.org/obo/OPMI_"^^ . . . . "molecular interaction" . "genomics" . . . . . . . "protein" . . "machine learning" . "SWEET Ontology Representation Space Geometry" . . "http://purl.obolibrary.org/obo/FBcv_$1"^^ . "false"^^ . "http://purl.obolibrary.org/obo/DRON_$1"^^ . . "ssrn.article" . . . . . "Resource"^^ . "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY|UPS)\\d+$"^^ . . . . "AOPWiki (Key Event)" . "https://catalog.integbio.jp/dbcatalog/en/record/"^^ . . . "elsst" . "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters."^^ . . . . "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments."^^ . . . "IUPHARobj" . . "206"^^ . . . . . "genetics" . "subject agnostic" . "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." . . . "gtn" . . . . . "research" . "https://purl.dataone.org/odo/SALMON_$1"^^ . "disease" . . . "biomedical science" . . . . "ontology" . . . . . . "taxonomy" . "Systems Biology Ontology" . . . "Sebastian Koehler" . "December 2019"^^ . "mouse" . "SUBSET_SIREN" . . . "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . . . . . . . . "This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)"^^ . "agriculture" . "A vocabulary and ontology repository for agronomy and related domains." . . "false"^^ . . "heart" . "^\\w+$"^^ . . "life cycle" . "biomedical science" . . "atcc" . . "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$"^^ . . . . "ontology" . . . "false"^^ . . "2526"^^ . . "somael" . . . "Hannele Laivuori" . "http://purl.obolibrary.org/obo/SEP_"^^ . . "https://w3id.org/semapv/vocab/$1"^^ . . "Lucas Leclere" . . . "^\\w+$"^^ . . "https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno="^^ . "population genetics" . "Identifier for an entity in open tree of life"^^ . "https://glyconavi.org/hub/?id="^^ . . "gene expression" . . "http://ctdbase.org/detail.go?type=chem&acc="^^ . . . "https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term="^^ . . . . . . "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources."^^ . "http://purl.obolibrary.org/obo/OHD_$1"^^ . "hathitrust" . "experimental animal" . . . . "chemistry" . "https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem=$1"^^ . . "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships."^^ . "false"^^ . "false"^^ . . "disorders" . "^EP\\d{4}$"^^ . . "false"^^ . "true"^^ . . . "SKOS Thesaurus Extension" . . . . "flybase" . . "0000295"^^ . . . "genetic disorder" . . . . . . . . "Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments"^^ . . . . "N0000001662"^^ . "chembiosys.strain" . . . . . . "dcam" . . . . . "genome-wide association study" . . . . . "TA_H3"^^ . . "22132778"^^ . . . "false"^^ . "false"^^ . . . "http://sweetontology.net/reprTimeSeason/$1"^^ . "https://prefix.cc/" . "0003463"^^ . . . . "false"^^ . . "model organism database" . "smiles" . . . . "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)"^^ . . . . . . "https://molbic.idrblab.net/data/compound/details/"^^ . "gobp" . "proteomics" . . . . . "mazumder@gwu.edu" . . "smart" . "j.a.moore@dundee.ac.uk" . "http://sweetontology.net/realmEarthReference/"^^ . "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1"^^ . . "ontology" . . "false"^^ . . . . . . "https://www.confident-conference.org/index.php/Event_Series:$1"^^ . . "Type of Translation Method" . "^(MNXR\\d+|EMPTY)$"^^ . . . "assay" . . "human disease" . . "classification" . . . . . "This is a relational database of information about hemoglobin variants and mutations that cause thalassemia."^^ . . "http://www.w3.org/1999/xhtml/vocab#"^^ . . . "paleodb" . "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1"^^ . . . . "sharesAuthorInstitutionWith"^^ . . . . "earth sciences" . . . "Drivers of human diseases including environmental, maternal and social exposures."^^ . "ontology" . . . . . "Semanticscience Integrated Ontology" . . "Type of Telephone" . . "belongsTo"^^ . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1"^^ . "life science" . . "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$"^^ . . "https://www.ebi.ac.uk/ols4/ontologies/$1" . "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles."^^ . "life science" . . "learning resource" . "dna" . . "false"^^ . "00000000001"^^ . "Cell line databases/resources"^^ . . . . "false"^^ . "^\\w.+$"^^ . "https://www.iedb.org/receptor/"^^ . . . . . . "SWEET Ontology Phenomena ElectroMagnetic" . . "http://purl.org/dcx/lrmi-vocabs/educationalAudienceRole/"^^ . . . "http://purl.org/spar/doco/"^^ . "intervention design" . . "https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:$1"^^ . "http://www.w3.org/2003/g/data-view#$1"^^ . "Brick Ontology" . "ddinter.interaction" . . "Human Medical Genetics" . . . . "_fe65f286"^^ . . . . "ChemBioSys Publication" . "HMS LINCS Cell" . . . . . . "CRISPRdb" . . . . "http://purl.bioontology.org/ontology/HCPCS/"^^ . "http://sweetontology.net/humanCommerce/$1"^^ . "A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic."^^ . . "cell biology" . . . "life science" . "Adriano Mari" . . "biomedical science" . . "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds."^^ . . . . "computational biology" . . "mbaudis@me.com" . "dc06de9f-dd3a-4f28-b58f-b01b5ae72ab8"^^ . . "proteomics" . . . "Pan African Clinical Trials Registry" . . . . . . . "protein" . . "biomedical science" . . "false"^^ . "000001"^^ . "https://www.gwascentral.org/phenotype/$1"^^ . "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$"^^ . . "Aromatic"^^ . . . . "http://biomeddb.org/Disease/Details?DISEASEID="^^ . "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/"^^ . . . . . . . . . . . . . . . . "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools."^^ . . "noaa.species" . _:Ne8df13ff1c4c48d1a321c137020f8198 "João Paulo A. Almeida" . . "https://www.ncbi.nlm.nih.gov/protein/$1"^^ . "geologic volcano" . "phenotype" . "http://kgi.services.base4nfdi.de/entity/$1"^^ . . . "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information."^^ . . . "MIRIAM Legacy Registry Identifier" . . . "^U\\d+$"^^ . . . "false"^^ . . . . . "Symposium"^^ . . . . . "pdthomas@usc.edu" . "^\\w+$"^^ . . . "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession="^^ . "Ax1"^^ . . . "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1"^^ . . . "nanoparticle" . "gxa.gene" . "https://www.phosphosite.org/curatedInfoAction.action?record=$1"^^ . . "false"^^ . . . "Marilyn Safran" . . . . . "https://w3id.org/faircookbook/$1"^^ . . . "https://www.ncbi.nlm.nih.gov/clinvar/submitters/"^^ . "http://purl.obolibrary.org/obo/IDOMAL_$1"^^ . . . . . . . . "An Educational and Career-Oriented Recommendation Ontology" . . "false"^^ . . . . . "computer science" . . . "fbcv" . . . "http://sweetontology.net/humanAgriculture/$1"^^ . . "Web of Science work ID" . . . . . . . . . . . . . . . "allele" . . . "Kangho Ji" . "industry" . "TS-0001"^^ . . "ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides identifiers for curations representing evidence aggregation and expert panel assertions based on standardized evaluation procedures"^^ . . "gene" . "false"^^ . . . . . . . . "1150"^^ . "metagenomics" . "life science" . . . "Acoustic"^^ . . . . "http://qudt.org/schema/qudt#$1"^^ . . _:N975c99ba567943278c37f21f86ee22b1 . "https://osdr.nasa.gov/bio/repo/data/missions/$1"^^ . . . . _:Nd795a7599acd4fc4b6066103c1430c8a "register@clinicaltrials.gov" . "Osamu Ohara" . . . . . . "classification" . . . . "http://www.ecogene.org/gene/"^^ . . . . "638309541"^^ . . "subject agnostic" . . "75"^^ . "chemical" . "medicine" . . . . . . . . . "aaeA"^^ . . "CIViC gene" . . . . "iot" . . "0005067"^^ . . "fda.application" . . . . . . _:N82e1aa39b46f4f1f8fbf24bf93ec344f "steve.baskauf@vanderbilt.edu" . "https://www.wormbase.org/get?name="^^ . "http://purl.obolibrary.org/obo/OMP_"^^ . . "false"^^ . "https://scicrunch.org/resolver/RRID:"^^ . "Alen Vodopijevec" . . . "biomedical science" . "false"^^ . . . "listdb.onto" . . . "inaturalist.observation" . . . "An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes."^^ . . . "http://dase.cs.ksu.edu/ontology/food-traceability#"^^ . . . . . "stn" . . . . . "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" . . "Chinese Clinical Trial Registry" . . "structure" . . "Hs635"^^ . . "resource metadata" . "A vector graphic for an anatomical entity useful for biological and biomedical informatics applications."^^ . "obo" . "noncodev3" . . "geoinformatics" . . "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables"^^ . "true"^^ . "TIB Terminology Service" . . . "The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)"^^ . "Internet Standard -- IETF Request for Comments" . . "https://bartoc.org/en/node/$1" . "hesa" . "^\\d+$"^^ . "ama-cpt" . . . "http://birdgenenames.org/cgnc/GeneReport?id="^^ . . "study design" . . "biomedical science" . . . "lschriml@som.umaryland.edu" . "^[A-Z-_0-9]+$"^^ . "http://scop.berkeley.edu/sccs=$1"^^ . . . . . "A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants."^^ . . "^[A-Z0-9]+$"^^ . . . . "oidc" . . "insertion"^^ . . "SPU_000001"^^ . . "geologic geomorphology" . . . . . "EcoLexicon" . . . . . . _:Nd37ef582ce0145f19c8af0c1cb83f3a7 . . . "false"^^ . . . . . "nfdi4ing" . "sophatmops" . "SWEET Ontology Phenomena Wave" . . . "^\\d{7}$"^^ . . "UniProt Diseases" . . "false"^^ . . . "dan5@georgetown.edu" . . . "forest management" . . "false"^^ . . "https://doulix.com/constructs/"^^ . . . . . . . . . . " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."^^ . . "Protein modification" . . . . "SWEET Ontology Realm Land Volcanic" . "^[a-z]+(\\..*?)?$"^^ . . . . "An ontology for energy systems and energy efficiency in the construction and renovation domain"^^ . . . "^T\\d{3}$"^^ . . "^\\d+$"^^ . "true"^^ . . "hsa00190"^^ . . . "microbial" . "MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data."^^ . . . "stem cell" . . . "vt" . . "http://sweetontology.net/matrIndustrial/$1"^^ . "true"^^ . "NFDI4Health Collection" . . . . . . . "gramene.reference" . "chembl.compound" . . . . . . "co_321" . . "^\\d+$"^^ . . . "A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies)."^^ . . "life sciences, biology" . . . . . "obo" . . "obo" . . . . "life science" . . "Handle" . "Diseases Database" . . "IntAct Molecule" . "fair data spaces" . . . "^\\d{7}$"^^ . "http://sweetontology.net/propTemperatureGradient/"^^ . "false"^^ . . "http://purl.org/net/orth#"^^ . . . "cgd" . "ICD9CM_2006" . "SWEET Ontology Representation Time Day" . . . "pharmacological family classification" . . . . . "agsd" . . "^\\d{6}$"^^ . . . . . "euvoc"^^ . . "ligandbox" . "https://w3id.org/qualo/id/$1"^^ . . "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes."^^ . . . . "^[A-Za-z_0-9]+$"^^ . "https://cameochemicals.noaa.gov/chemical/"^^ . . "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)."^^ . . _:N1514816e62e3492fb0ccaa6a158dc699 . "PolyMat Ontology" . . . "ontology" . "http://purl.obolibrary.org/obo/SIBO_$1"^^ . . "protein" . . . . . "nmr" . "ccf" . . . . "life sciences, biology" . "https://biopragmatics.github.io/debio/$1"^^ . . . . . . "mgilson@health.ucsd.edu" . . . "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."^^ . "ncbi.gc" . "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1"^^ . . "http://purl.obolibrary.org/obo/CLM_$1"^^ . . "chemistry" . "^Gm\\d+$"^^ . _:N4a647bf78b834f048d1336de4e4337ca "Pierre Sprumont" . "false"^^ . . "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease."^^ . "tol" . . "radlex" . "Crystallographic Information Framework" . . . "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id="^^ . . "false"^^ . "The ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology provides a taxonomy and thesaurus of photon and neutron (PaN) experimental techniques. Based mainly on accelerator-based light sources and neutron facilities, the primary use of the ontology is to enhance the FAIRness of PaN data catalogues services. The ontology defines specific techniques in terms of more general technique classes and provides synonyms and references."^^ . . "Gary L Andersen" . "false"^^ . "sweet.real" . . . "https://db.idrblab.net/ttd/data/drug/details/$1"^^ . "functional genomics" . "has canonical prefix" . . . "tb143@leicester.ac.uk" . "aaindex" . "10343835"^^ . "false"^^ . . "false"^^ . . . . "false"^^ . . . "The anatomy of the Tick, Families: Ixodidae, Argassidae"^^ . . . . . "https://www.ncbi.nlm.nih.gov/homologene/"^^ . . "https://meshb.nlm.nih.gov/record/ui?ui="^^ . . "zhangzhang@big.ac.cn" . "protein" . . "^\\d+$"^^ . "Robert Druzinsky" . "Influenza Sequence and Epitope Database" . . "^\\d+$"^^ . "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data."^^ . . "tib" . . "materials" . "Branch"^^ . . "false"^^ . . "anatomy" . . . "https://bioregistry.io/vsdb:"^^ . "false"^^ . "NCBI Registry" . . . "metamodel" . "realm" . . "proteomics" . . . . "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR."^^ . . . . . . "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank."^^ . "http://purl.obolibrary.org/obo/TTO_"^^ . "FBgn0000015"^^ . . . . _:N1f41a041529148678b06b28da2b4de20 . . "viralzone" . "BN000065"^^ . "proteomics" . . . "sweet.phatmot" . . "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id="^^ . . "PDB_CHEM_ID" . "^\\d+$"^^ . "fair data spaces" . . . . . "https://purl.brain-bican.org/ontology/dmbao/DMBA_$1"^^ . . "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."^^ . . "377369"^^ . . "http://purl.obolibrary.org/obo/ENVO_$1"^^ . "ndf-rt" . . . . "biomedical science" . "SNOMEDCT_US_2023_03_01" . . . . "false"^^ . "https://datacommons.org/browser/"^^ . . . . . . . . . . "https://plantreactome.gramene.org/content/detail/$1"^^ . . . "https://w3id.org/class/sectors/$1"^^ . "http://purl.obolibrary.org/obo/OMIABIS_"^^ . . . . "0001000"^^ . "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor."^^ . "w3c rec" . . "false"^^ . . . . . . "resource metadata" . "OpenAlex" . . "ontology" . . "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." . . "^\\d+$"^^ . . "sio" . "methods" . . . "040000"^^ . . . . . "^\\d+$"^^ . "0004828"^^ . "false"^^ . . . "https://w3id.org/nfdi4cat/voc4cat_"^^ . . . "false"^^ . . "https://w3id.org/reproduceme#$1"^^ . . "Atoll"^^ . "false"^^ . . . . . "SNOMEDCT_US_2019_03_01" . "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature="^^ . . . . . . . . . "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology"^^ . . . . "The annotation ontology provides vocabulary that enables users to attach custom descriptions, identifiers, tags and ratings to resources on their desktop. Via other properties, the user is also able to make generic relationships between related resources explicit. Some relationships between resources are too general to be included at the domain ontology level. Instead, these properties are also defined in the annotation ontology. Given the high-level status of this ontology, these propreties can be used to link any related resources on the user's desktop, as well as provide custom human-readable textual annotations. (from homepage)"^^ . "false"^^ . . . "zeco" . . . . "Protein Ensemble Database ensemble" . . "margaret.woodhouse@usda.gov" . . "embryo" . . . "civil engineering" . . . . "gene" . . "https://cropontology.org/rdf/CO_346:$1"^^ . . "^\\d+$"^^ . . "hydrogeology" . "http://purl.obolibrary.org/obo/HP_"^^ . . . . . . . . "MetaCyc is a database of non-redundant, experimentally elucidated metabolic pathways and enzymes. It also contains reactions, chemical compounds, and genes. It stores predominantly qualitative information rather than quantitative data, although it does contain some quantitative data such as enzyme kinetics data.\n\nMetaCyc is [curated](http://www.biocyc.org/glossary.shtml?sid=biocyc14-3908554027#Curation) from the scientific experimental literature according to an [extensive process](https://metacyc.org/MetaCycUserGuide.shtml#TAG:__tex2page_sec_4)]. The majority of pathways occurring in it are from microorganisms and plants. MetaCyc stores thousands of additional enzyme-catalyzed reactions that have not yet been assigned an EC number"^^ . "http://immunet.cn/bdb/index.php/mimoset/"^^ . . "fhir.implementation" . "natural product" . . . . "drugbank.target" . . . "genome" . . . "hoso" . "gc" . "https://www.phosphosite.org/curatedInfoAction.action?record="^^ . "British Oceanographic Data Centre data storage units" . "An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix)."^^ . "false"^^ . . "Drosophila RNAi Screening Center" . "economics" . . . "C0001"^^ . . "sweet.propcha" . "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1"^^ . "603903"^^ . . "Gainesville Core Ontology" . . "population genetics" . "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures."^^ . . . . "phenomena" . "A semi-automatically generated knowledgebase"^^ . "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1"^^ . . . . . . . . . "animal physiology" . . "molbase" . . . . . . . "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)"^^ . "biomodels.kisao" . . "https://purl.brain-bican.org/ontology/dmbao/DMBA_"^^ . "https://data.oncomx.org/OMX_$1"^^ . . "1"^^ . "biology" . "agriculture" . "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1"^^ . . . "license" . "0000685"^^ . . "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1"^^ . . . "false"^^ . . "Gs0000008"^^ . "sbml.level-3.version-2"^^ . . . "0001003"^^ . . . . "wormbase" . "Ontology for genetic interval" . . "regulation" . . . . . . "https://data.chembiosys.de/investigations/"^^ . . "http://www.kegg.jp/entry/"^^ . "genomic sequence" . . . . . . . "biomedical science" . "^SL-\\d+$"^^ . . "^SLCTR/\\d{4}/\\d+$"^^ . . . "Patent" . . . . . . "https://www.ebi.ac.uk/gwas/studies/$1"^^ . . "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates."^^ . "^\\d+$"^^ . . . . "A*01:01:01:01"^^ . . . . . . . . . "glycosciencesdb" . "0000564"^^ . . . "http://purl.bioontology.org/ontology/HOIP/HOIP_$1"^^ . "^\\d{7}$"^^ . . . . . . "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins."^^ . . "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast."^^ . . . "http://sweetontology.net/realmHydroBody/$1"^^ . . "Semantically-Interlinked Online Communities Access Ontology" . . . "sprint" . . . "realm" . . . . . "NERC Vocabulary Server" . . . . . . . . . . "phylogenetics" . . . "http://sweetontology.net/realmAstroHelio/"^^ . . "ettensohn@cmu.edu" . . "XB-GENE-922462"^^ . "COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a \"flat\" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."^^ . "geographic location" . . . "1038233"^^ . . "General Multilingual Environmental Thesaurus Group" . "blast" . "https://docid.africapidalliance.org/docid/"^^ . . . . "https://cellxgene.cziscience.com/e/"^^ . "isDocumentRelatedTo"^^ . . . . "drugs" . "wgs84" . . . . . . . "Variation Ontology" . . . . . . . "hpm.protein" . . . . "genome" . "epio" . "Life cycle stages for Human"^^ . . . . . . . . . "structural bioinformatcs" . . . . . . "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples."^^ . . "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^ . "NCBITaxon" . . "Code Ontology" . . . . . . . . "annotation" . "ClinVar Record" . "^MMP\\d+.\\d+$"^^ . . . . . . "infectious disease medicine" . . . . "http://sweetontology.net/rela/$1"^^ . . . "engineering" . "phosphorylation" . "anatomy" . . "AcousticComfort"^^ . "Ontology of Biological and Clinical Statistics" . "sweet.realg" . "https://cropontology.org/rdf/CO_370:"^^ . . . . "hc.din" . . . . "http://sweetontology.net/matrSediment/"^^ . . . . . "http://purl.org/spar/deo/"^^ . . . . . "small molecule" . "002_xxx_xxx-a228d7e065dc45b4b5ab48876aab7228-vp"^^ . . . "ocean" . . "life science" . . "neuronames" . . . . . "nfdi4ing" . . "sao" . "botany" . . . . . . . . . . "vcard" . "Daniel Marschall" . . . "Yam ontology" . . . . "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name="^^ . "ISO 639 3-Letter Language Code" . "https://models.physiomeproject.org/exposure/"^^ . . . "ISA Programme Location Core Vocabulary" . "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_"^^ . . "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC."^^ . . "http://repository.topdownproteomics.org/proteoforms/"^^ . . . . . "DrugBank" . . "https://www.iedb.org/receptor/$1"^^ . . . . . "addgene" . . . . . "https://disprot.org/$1"^^ . "dbr" . . "http://sweetontology.net/relaMath/$1"^^ . . . . . . . . . . "nfdi4ing" . . "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database."^^ . "antigen" . . . "false"^^ . "life science" . . . "0009089"^^ . . "ohd" . . . "false"^^ . . . . . . "intact.molecule" . "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-"^^ . . . . "PDB ligand" . "false"^^ . "Microarray experimental conditions" . "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts."^^ . "false"^^ . "ontology" . . . "false"^^ . "Stress Knowledge Map" . "FuncBase Human" . . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Solid"^^ . . . "Leen Vandepitte" . "false"^^ . . . . . . "wikidata" . . "Identifiers for lipid-protein interactions, including details about protein functions, protein families, lipid classifications, lipid-protein binding affinities, membrane association type, and atomic structures."^^ . . . "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"^^ . "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . . . . . . . . "annotation" . . . "GeneID" . "sequence" . . "^[0-9]{15}[0-9X]{1}$"^^ . "isacorreia@tecnico.ulisboa.pt" . "^\\d{7}$"^^ . "^[a-z0-9]+$"^^ . _:Nf7146456589947a6a638c937c6a09604 "bgee@isb-sib.ch" . . "roberts@neb.com" . . . . . "0000000"^^ . . . . "^\\d+$"^^ . . . . "phenotype" . . _:Nc9f8e1f4bfe449b58d4d28f0afd38c05 . . . . "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes."^^ . "Identifiers correspond to curated associations between diseases and tRNA-derived small RNAs (tsRNAs) in the tsRNADisease database."^^ . "biochemistry" . . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Heliosphere"^^ . . "https://gudmap.org/id/$1"^^ . . . . "false"^^ . "Search Tool for Interactions of Chemicals" . . . . "dcmitype" . . . "gene" . . "http://www.bioassayontology.org/bao#BAO_"^^ . . "morphology" . . . . . "proteomics" . _:N408a2ca0b65c42119f41bd250f717e87 . . . . . "dpv" . . "^5\\d{4}$"^^ . "chemical" . . . . . "^G[0-9]{5}[A-Z]{2}$"^^ . . . "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/"^^ . . . . . . "https://saref.etsi.org/saref4syst/$1"^^ . . "botany" . . "false"^^ . "https://chemprosquare.idrblab.net/data/probe/details/$1"^^ . "somaio" . "00000005"^^ . . . . . "https://spec.edmcouncil.org/fibo/ontology/$1"^^ . . _:N00f61fd27b78433ca22c0710d7400725 "loinc@regenstrief.org" . "https://ssrn.com/abstract="^^ . . . . "Learning Resource Metadata Innovation Terms" . "http://www.scancerrna.com/toDetail?id="^^ . . . . . . "Karen.Christie@jax.org" . "Identifiers.org Registry" . . . . . . . . . . . "ido" . "false"^^ . . . . . . . "http://sweetontology.net/relaClimate/"^^ . . . . . "This specification contains a framework for representing pointers - entities that permit identifying a portion or segment of a piece of content - making use of the Resource Description Framework (RDF). It also describes a number of specific types of pointers that permit portions of a document to be referred to in different ways. When referring to a specific part of, say, a piece of web content, it is useful to be able to have a consistent manner by which to refer to a particular segment of a web document, to have a variety of ways by which to refer to that same segment, and to make the reference robust in the face of changes to that document. This specification is part of the Evaluation And Report Language (EARL) but can be reused in other contexts too. [from homepage]"^^ . . "obo" . "structure" . . . . . . "Jian Huang" . . . . "ontology" . "life science" . "NFDI4Earth Ontology" . . . . "^\\d{8}$"^^ . "Kim Dixon Pruitt" . . . "DTXSID2021028"^^ . "http://purl.obolibrary.org/obo/UBERON_$1"^^ . "false"^^ . . . "https://cropontology.org/rdf/CO_336:$1"^^ . . "https://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1"^^ . . . "http://sweetontology.net/phenEnvirImpact/$1"^^ . . "false"^^ . "3966782"^^ . "soreaofl" . . "Networks in DEIMS SDR"^^ . . "0000199"^^ . "^\\d{8}$"^^ . "http://www.w3.org/ns/adms#$1"^^ . . . "danbri@w3.org" . . . "^\\d+$"^^ . "1257009"^^ . . . "ksdrew@uic.edu" . . "iECABU_c1320"^^ . "ontology and terminology" . "violinId" . . . "BioModels Database" . . . "false"^^ . . "https://www.ebi.ac.uk/metabolights/$1"^^ . "Glenn King" . "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."^^ . . . . . "ontology" . "genomics" . . "earl" . . . "OMIM Phenotypic Series" . . . . "http://purl.uniprot.org/core/$1"^^ . . . "^[a-zA-Z]+.+$"^^ . "MaizeGDB" . . "https://www.metanetx.org/comp_info/"^^ . . "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" . . . "https://sciprofiles.com/profile/"^^ . "https://bioregistry.io/hovergen:"^^ . . . "protein" . . "https://web.expasy.org/cellosaurus/cellopub/"^^ . "http://www.proteinatlas.org/$1"^^ . . "^\\d{8}$"^^ . "charge" . "true"^^ . "uniprot.isoform" . "http://sweetontology.net/realmLandTectonic/$1"^^ . . "biomedical science" . "https://mamoura.eci.ufmg.br/tematres/vocab/index.php?tema=$1"^^ . . . . . . "pathway" . . . . . . "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease."^^ . . "SWEET Ontology Human Transportation" . . . . _:N44157c7dd5d14a279fc29eada7d31c92 "vlee@ebi.ac.uk" . "^\\d{4}$"^^ . . "chemical" . . . . "P3DB Site" . . . . . "lewis.geer@nih.gov" . "biomedical science" . "representation data service validation" . "^\\d+$"^^ . "The Smart Applications REFerence ontology (SAREF) is intended to enable interoperability between solutions from different providers and among various activity sectors in the Internet of Things (IoT), thus contributing to the development of the global digital market."^^ . "Medaka fish anatomy and development" . . "http://www.scopus.com/record/display.url?origin=inward&eid="^^ . "sohueccont" . . . . "false"^^ . "0003"^^ . "false"^^ . . . . "seaver@anl.gov" . "https://www.inaturalist.org/users/$1"^^ . . "BioSystems" . . "neuroscience" . . . . "gene expression" . . . . . "ardb" . . . . . . . . "false"^^ . . . . . . . "Gene Wiki" . . "false"^^ . . . . "Accession number of an entry from the BIND database."^^ . "https://www.metanetx.org/comp_info/$1"^^ . "Christian-Alexander Dudek" . . "^[0-9][A-Za-z0-9]{3}$"^^ . . "sweet.repsg3" . . . "bone element" . . "food" . . "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information."^^ . "EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)"^^ . "nmrXiv sample" . "gocc" . "CardinalScale"^^ . "http://purl.org/spar/biro/$1"^^ . . "Josh Moore" . "doqcs.pathway" . . "obo" . "Continuous"^^ . . . . "BloodPAC" . . "^DBCOND\\d+$"^^ . "niclas.karlsson@medkem.gu.se" . . . . . . . . . "obo" . . . "A classification system for the subject matter of works of art, originating from work from Henri van de Waal in the 1940."^^ . . . . "protein" . "engineering" . "https://oerschema.org/"^^ . "life science" . . . . "KEGG LIGAND" . . "false"^^ . "ontology" . . . "This database is a collection of protein-protein homo- and hetero-complexes as well as domain-domain structures. This issue of the database contains 17.024 entries (as of October 2007) of which 1350 are two-chain protein hetero-complexes, 7773 homodimers and 1589 are one-chain proteins parsed into two domains (domain structures)."^^ . "Genomic Epidemiology Ontology" . . "false"^^ . "richard@cyganiak.de" . "ontology" . . "Erik.Segerdell@cchmc.org" . . . _:Nef67f6212b804ee4b07f6731c7633260 "Kim Durante" . . "false"^^ . "protein" . . . . . "^\\d{7}$"^^ . . . . . "false"^^ . "ontology" . "false"^^ . "wawong@gmail.com" . . . . . . . . . . "false"^^ . "materials" . "https://model.geneontology.org/"^^ . "http://purl.obolibrary.org/obo/MIRO_$1"^^ . . "false"^^ . . . "Identifiers.org namespace" . "false"^^ . . . "swo" . . "Daniel Sonenshine" . . . . "neuroscience" . "cell" . . _:Nebd7d29858854ffaab04f09023b7ed08 "Stephan Schurer" . . . . . . "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization."^^ . . . "^\\d+$"^^ . . . . . . . "false"^^ . "open educational resources" . . "http://www.opengis.net/ont/geosparql#$1"^^ . "sweet.repsu" . . . "^PTM-\\d{4}$"^^ . . "ddi.analysisunit" . . "false"^^ . . . . . "state role trust" . . . . "wave noise" . . "Bioregistry Metaregistry" . . . . . . "educational science" . . "MI0026471"^^ . "Teleost taxonomy ontology" . . "LDPC0032"^^ . "quality" . "rna" . . . . . . "life sciences, biology" . . . . . "signor.relation" . . . . "http://www.allergome.org/script/dettaglio.php?id_molecule="^^ . "false"^^ . "chemistry" . "http://sweetontology.net/phenHelio/$1"^^ . "The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Chemical"^^ . . . "gene" . . . . . . "issaku@noguchi.or.jp" . . "Prefixes for ontologies relevant for the NFDI4Energy" . . . "experimental measurement" . "The SAGE Social Science Thesaurus is a multidisciplinary vocabulary of the most important concepts in the social sciences. SAGE uses this vocabulary as its principal keyword vocabulary for automated tagging of content on SAGE Knowledge and SAGE Research Methods. You are welcome to browse, download, use and transform the vocabulary for any non-commercial purpose.\n\nThe majority of concepts in the thesaurus have been mined from headwords in SAGE encyclopedias and other reference works. Relationships between concepts have been inferred from implicit structures in those works, for example subject indexes and readers' guides. As such, the thesaurus is a structured representation of what the editors of those reference works consider to be the most important concepts in the social sciences.\n\nAdditional scraping work has extracted and structured concept-specific metadata, such as dates (for events and people) and definitions. In addition to broader-narrower relationships, concepts are grouped by type: concepts, people, organizations, events, methods, theories or laws."^^ . . . . "drug report" . . . . . . . . "zoology" . "Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output."^^ . . "^\\d+$"^^ . . . "JCRB1355"^^ . . "ontology" . "data visualization" . . . . "statistics" . "Bibliometric Data Ontology" . . "https://nztcs.org.nz/nztcs-species/"^^ . . "BioCatalogue Service" . . . . . "AffyProbeset"^^ . "The Unified Medical Language System® (UMLS®) Metathesaurus (MTH) was developed and is maintained by the U.S. National Library of Medicine (NLM). MTH contains concept names, attributes, relationships, and other data that were created by NLM to facilitate construction of the UMLS Metathesaurus."^^ . . "Olivier Bodenreider" . . . "x-ray diffraction" . . . . . . "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning."^^ . . . . . . . "https://prefix.cc/$1" . . "mosquito" . "^\\d+$"^^ . . "obo" . . . . . . . . . . "genome" . . _:N65aa54a1b34f467d862f849c8f2fec01 "lars.juhl.jensen@cpr.ku.dk" . . . "genome" . . . . "ontology" . . "^\\d{7}$"^^ . "http://nbn-resolving.org/"^^ . . . . . . "SEQF1003.1"^^ . "^\\d+$"^^ . "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . . . "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1"^^ . . . "^\\d+$"^^ . "gufo" . . "data management" . "orangebook" . "https://scicrunch.org/scicrunch/interlex/view/ilx_$1"^^ . "capacity" . "social media" . "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1"^^ . . . . . . . . . . . . . . "AberOWL" . "swissregulon" . . . . "25782"^^ . "ontology" . . "true"^^ . . "sean@arabidopsis.org.uk" . "imr" . "Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary" . "Open Data Commons for Traumatic Brain Injury" . . . "0000109"^^ . . . . "subject agnostic" . "educational resources" . . . "^PA\\d+$"^^ . "open educational resources" . . "developmental biology" . "false"^^ . . "^\\d{7}$"^^ . . "false"^^ . "vendor" . "http://www.bootstrep.eu/ontology/GRO#$1"^^ . . "NM_006262"^^ . "kaysheva1@gmail.com" . . "https://stemcells.nindsgenetics.org?line="^^ . . "protein" . "^[a-z_A-Z0-9]+$"^^ . "http://sweetontology.net/stateSystem/"^^ . "aop" . . . . "anatomy" . . "http://sweetontology.net/propMass/"^^ . "false"^^ . "rna-seq assay" . "cheminformatics" . "LBCTR2023015204"^^ . . . . . . "noaa" . "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1"^^ . "false"^^ . "4D Nucleome Data Portal Biosource" . "nfdi4chem" . . . "false"^^ . . "An expanded example URL for a resource or metaresource." . . . . . "transcriptomics" . "http://www.europeana.eu/schemas/edm/$1"^^ . . . "nfdi4ing" . . "OSR00185W"^^ . . "false"^^ . "The HGVS Nomenclature is an internationally-recognized standard for the description of DNA, RNA and protein sequence variants. It is used to convey variants in clinical reports and to share variants in publications and databases. The HGVS Nomenclature is administered by the [HGVS Variant Nomenclature Committee (HVNC)](https://hgvs-nomenclature.org/stable/hvnc/) under the auspices of the [Human Genome Organization (HUGO)](https://hugo-int.org/)."^^ . . . "F11903"^^ . "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . . . . . . "protein"^^ . . . "The official list of MIME types, now renamed to media types"^^ . . . . . . . . . . . "bsu:BSU01340"^^ . . . "^\\d+$"^^ . . "obo" . . . . . "918902"^^ . "https://civicdb.org/links/drugs/$1"^^ . . "mampol" . . . . "^\\d+$"^^ . . . "small molecule" . . . . . "marker" . "sorepdsr" . "http://purl.obolibrary.org/obo/PCL_$1"^^ . "developmental biology" . . . . "http://purl.obolibrary.org/obo/AERO_$1"^^ . . "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences."^^ . . "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1"^^ . . . .