identifier	name	homepage	description	pattern	example	email	uri_format	download.owl	download.obo	synonyms	deprecated	aberowl	agroportal	bartoc	biocontext	bioportal	cellosaurus	cheminf	cropoct	ecoportal	edam	hl7	integbio	lov	miriam	n2t	obofoundry	ols	ontobee	pathguide	prefixcc	prefixcommons	re3data	rrid	tib	togoid	uniprot	wikidata	wikidata.entity	zazuko	part_of	provides	has_canonical
_3dmet	3D Metabolites	http://www.3dmet.dna.affrc.go.jp/	3DMET is a database collecting three-dimensional structures of natural metabolites.	^B\d{5}$	B00162		http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1			3dmet	True				3DMET						2635		nbdc00351		3dmet	3dmet						3dmet						P2796					
_4dn.biosource	4D Nucleome Data Portal Biosource	https://data.4dnucleome.org/biosources	The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases.	^4DN[A-Z]{2}[A-Z0-9]{7}$	4DNSR73BT2A2	Job.Dekker@umassmed.edu	https://data.4dnucleome.org/biosources/$1			4DN|4dn.biosource	False						4DN								4dn							4dn							Q110613621				
_4dn.replicate	4D Nucleome Data Portal Experiment Replicate	https://data.4dnucleome.org/experiment-set-replicates/	Database portal containing replicate experiments of different assays and samples		4DNESWX1J3QU		https://data.4dnucleome.org/experiment-set-replicates/$1			4dn.replicate	False																												Q110613797				
aacdb	Antibody-Antigen Complex Database	https://i.uestc.edu.cn/AACDB	Identifiers represent antibody-antigen complexes in the Antigen-Antibody Complex Database (AACDB), which provides comprehensive structural and functional annotations including paratope and epitope information, antibody developability data, and antigen-drug target relationships to support immunoinformatics research and therapeutic antibody development.	^\d+$	61	hj@uestc.edu.cn	https://i.uestc.edu.cn/AACDB/details.php?id=$1				False																																
aaindex	AAindex	http://www.genome.ad.jp/aaindex/	Identifier of an entry from the AAindex database.		BUNA790102	shuichi@hgc.jp	http://www.genome.jp/dbget-bin/www_bget?aaindex:$1				False										1128		nbdc00004									aaindex							Q85738825				
aao	Amphibian gross anatomy	http://github.com/seger/aao	A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.	^\d{7}$	0000138	david.c.blackburn@gmail.com	http://purl.obolibrary.org/obo/AAO_$1				True		AAO		AAO												aao					aao							Q114677701				
abcam	Abcam	https://www.abcam.com	Vendor for assays, cells, and antibodies		ab275461		https://www.abcam.com/$1.html				False						Abcam																						Q29123382				
abcd	AntiBodies Chemically Defined database	https://web.expasy.org/abcd/	The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies		AD834	Pierre.Cosson@unige.ch	https://web.expasy.org/abcd/ABCD_$1				False						ABCD																				DB-0236		Q110998933				
abm	Applied Biological Materials cell line products	https://www.abmgood.com/Cell-Biology.html	Cell line collections (Providers)		T0599		https://www.abmgood.com/search?query=$1				False						ABM																										
abs	Annotated Regulatory Binding Sites	http://genome.crg.es/datasets/abs2005/	The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.	^A\d+$	A0014	enrique.blanco@crg.eu	http://genome.crg.es/datasets/abs2005/entries/$1.html				False				ABS						2741				abs	abs				217		abs							Q111134507				
absd	AntiBody Sequence Database	https://absd.pasteur.cloud	The AntiBody Sequence Database is a public dataset for antibody sequence data. It provides unique identifiers for antibody sequences, including both immunoglobulin and single-chain variable fragment sequences. These are are critical for immunological studies, and  allows users to search and retrieve antibody sequences based on sequence similarity and specificity, and other biological properties.	^[a-f0-9]{64}$	81d0ea69a9ab134f6ba68314e982171a367d3ab739c85c5ba49701dd02170ed3	nicolas.maillet@pasteur.fr	https://absd.pasteur.cloud/antibody/$1				False																																
ac	Activity Streams	http://www.w3.org/ns/activitystreams	Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities.		Add		http://www.w3.org/ns/activitystreams#$1			as	False																												Q4677626	as			
ac.subtype	Audubon Core Subtype Controlled Vocabulary	http://rs.tdwg.org/ac/doc/subtype/	Audubon Core uses the terms ac:subtype and ac:subtypeLiteral to refine the type of a media item to a level more specific than the Dublin Core Type Vocabulary, http://purl.org/dc/dcmitype/. This controlled vocabulary provides values for ac:subtype and ac:subtypeLiteral.		Animation	steve.baskauf@vanderbilt.edu	http://rs.tdwg.org/acsubtype/$1				False									ACSUBTYPE															acsubtype								
ac.variant	Audubon Core Variant Controlled Vocabulary	http://rs.tdwg.org/acvariant.htm	Audubon Core uses the terms ac:variant and ac:variantLiteral to provide information about the size, extent, and availability of the Service Access Point of a media item. This controlled vocabulary provides values for those terms.		v001	steve.baskauf@vanderbilt.edu					False									ACVARIANT															acvariant								
aceview.worm	Aceview Worm	https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm	AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.	^[a-z0-9-]+$	aap-1	mieg@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1				False				ACEVIEW.WORM										aceview.worm	aceview.worm						aceview.worm											
acl	Basic Access Control ontology	http://www.w3.org/wiki/WebAccessControl	The Basic Access Control ontology describes how access rights (access control) are defined on the web.		Access						False			17815										acl																acl			
adcad	Arctic Data Center Academic Disciplines Ontology	https://arcticdata.io/	An ontology to support disciplinary annotation of Arctic Data Center datasets.	^\d{5}$	00000	brycemecum@gmail.com	https://purl.dataone.org/odo/ADCAD_$1	https://github.com/NCEAS/adc-disciplines/raw/main/ADCAD.ttl			False	ADCAD				ADCAD																											
addexbio	AddexBio cell line products	https://www.addexbio.com/productshow?id=4	Cell line collections (Providers)		C0020004/4992		https://www.addexbio.com/productdetail?pid=$1				False						AddexBio																										
addgene	Addgene Plasmid Repository	http://addgene.org/	Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.	^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$	50943	joanne.kamens@addgene.org	http://addgene.org/$1				False												nbdc00356		addgene	addgene						addgene	r3d100010741	Addgene									
addicto	Addiction Ontology	https://addictovocab.org	The Addiction Ontology (AddictO) is an ontology being developed all aspects of addiction research.		0000447	robertwest100@gmail.com	http://addictovocab.org/ADDICTO_$1	https://addictovocab.org/addicto.owl			False																	addicto															
adms	Asset Description Metadata Schema Vocabulary	http://www.w3.org/ns/adms	A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies).		Asset	bert.van.nuffelen@tenforce.com	http://www.w3.org/ns/adms#$1				False			17818										adms																			
ado	Alzheimer's Disease Ontology	https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO	Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining.	^\d{7}$	0000001	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/ADO_$1				False	ADO				ADO											ado	ado	ADO										Q54887745				
adw	Animal natural history and life history	http://www.animaldiversity.org	Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.	^[A-Z_a-z]+$	Lycalopex_vetulus	adw_geeks@umich.edu	https://animaldiversity.org/accounts/$1				True	ADW	ADW		ADW	ADW									adw	adw	adw												Q114677837				
aeo	Anatomical Entity Ontology	https://github.com/obophenotype/human-developmental-anatomy-ontology/	AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology	^\d{7}$	0001017	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/AEO_$1		http://purl.obolibrary.org/obo/aeo.obo	AEO_RETIRED	True	AEO		181	AEO	AEO											aeo	aeo	AEO										Q81661532				
aeon	Academic Event Ontology	https://tibonto.github.io/aeon/	The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page).	^\d{7}$	0000001	philip.stroemert@tib.eu	http://purl.obolibrary.org/obo/AEON_$1	https://raw.githubusercontent.com/tibonto/aeon/main/aeon.owl			False																								aeon								
aero	Adverse Event Reporting Ontology	http://purl.obolibrary.org/obo/aero	The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events	^\d{7}$	0000125	mcourtot@gmail.com	http://purl.obolibrary.org/obo/AERO_$1				True	AERO			AERO	AERO											aero	aero											Q55118235				
affy.probeset	Affymetrix Probeset	http://bio2rdf.org	An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.	^\d{4,}((_[asx])?_at)?$	243002_at		http://bio2rdf.org/affymetrix:$1				False				AFFY.PROBESET										affy.probeset	affy.probeset										AffyProbeset							
afo	Allotrope Merged Ontology Suite	https://www.allotrope.org/	Allotrope Merged Ontology Suite		result#AFR_10001055	more.info@allotrope.org	http://purl.allotrope.org/ontologies/$1				False	AFO				AFO												afo	AFO						afo								
afpo	African Population Ontology	https://github.com/h3abionet/afpo	AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms.		0000440	mcmelek@msn.com	http://purl.obolibrary.org/obo/AfPO_$1				False	AFPO				AFPO											afpo	afpo	AfPO														
aftol.category	Assembling the Fungal Tree of Life - Category	https://aftol.umn.edu	Categories in the AFTOL database		229	davem@umn.edu	https://aftol.umn.edu/glossary?category=$1				False																																
aftol.taxonomy	Assembling the Fungal Tree of Life - Taxonomy	https://aftol.umn.edu	The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.	^\d+$	959	davem@umn.edu	http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1				True				AFTOL.TAXONOMY										aftol.taxonomy	aftol.taxonomy																	
agilent.probe	Agilent Probe	https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-2320/A-MEXP-2320.adf.txt	This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array  contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011).  Probe annotation was taken from A-GEOD-16699.	^A_\d+_.+$	A_24_P98555						False																																
agricola	Agricultural Online Access	http://agricola.nal.usda.gov/	AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.	^(IND|GUA)\d+$	IND608186955	judith.blake@jax.org	https://europepmc.org/article/AGR/$1			AGR|AGRICOLA_ID	False				AGRICOLA										agricola	agricola													Q4651693				
agrkb	Alliance of Genome Resources Knowledge Base	https://www.alliancegenome.org	"The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.

The Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:

- [ZFIN](https://zfin.org) - Zebrafish Information Network
- [WormBase](https://wormbase.org)
- [MGI](https://www.mgi.org) - Mouse Genome Informatics
- [RGD](https://rgd.mcw.edu) - Rat Genome Database
- [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database
- [FlyBase](https://flybase.org)
- [Xenbase](https://www.xenbase.org)"	^[1-9][0-9]{14}$	100000000000001	cjmungall@lbl.gov	https://www.alliancegenome.org/accession/$1				False																										DB-0266						
agro	Agronomy Ontology	https://github.com/AgriculturalSemantics/agro	AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities	^\d{8}$	00020007	m.a.laporte@cgiar.org	http://purl.obolibrary.org/obo/AGRO_$1		https://raw.githubusercontent.com/KrishnaTO/agro/master/agro.obo		False	AGRO	AGRO		AGRO	AGRO											agro	agro	AGRO						agro				Q81661533				
agrovoc	Agronomy Vocabulary	https://data.apps.fao.org/catalog/organization/agrovoc	AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages.	^[a-z0-9]+$	2842	alex.skrenchuk@stanford.edu	http://aims.fao.org/aos/agrovoc/c_$1				False	AGROVOC	AGROVOC	305		AGROVOC				AGROVOC																		P8061	Q292649				
agsc	Ambystoma Genetic Stock Center	https://ambystoma.uky.edu/genetic-stock-center/	The Ambystoma Genetic Stock Center (AGSC) maintains a breeding colony of Mexican axolotls (Ambystoma mexicanum) and distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. [from homepage]		100E	srvoss@uky.edu	https://scicrunch.org/resolver/RRID:AGSC_$1				False																							AGSC									
agsd	Animal Genome Size Database	http://www.genomesize.com	A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources.		4779		http://www.genomesize.com/result_species.php?id=$1				False																					agsd	r3d100012517						Q4764809				
aio	The Artificial Intelligence Ontology	https://github.com/berkeleybop/artificial-intelligence-ontology	This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.		Causal_Graphical_Model	MJoachimiak@lbl.gov	https://w3id.org/aio/$1	https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.owl	https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.obo		False	AIO				AIO																											
aism	Ontology for the Anatomy of the Insect SkeletoMuscular system	https://github.com/insect-morphology/aism	The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.	^\d{7}$	0000027	entiminae@gmail.com	http://purl.obolibrary.org/obo/AISM_$1				False	AISM				AISM											aism	aism	AISM										Q112972813				
alfred	The ALlele FREquency Database	http://alfred.med.yale.edu	ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases.		LO362836C		https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1				True																					alfred							Q294392				
allergome	Allergome	http://www.allergome.org/	Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.	^\d+$	1948	adriano.mari@allergome.org	http://www.allergome.org/script/dettaglio.php?id_molecule=$1				False				ALLERGOME								nbdc01708		allergome	allergome						allergome					DB-0160		Q111136043				
allotrope.process	Allotrope process	https://www.allotrope.org/	The process component of the Allotrope ontology suite	^\d+$	0001263		http://purl.allotrope.org/ontologies/process#AFP_$1				False																														afo		
allotrope.quality	Allotrope quality	https://www.allotrope.org/	The quality component of the Allotrope ontology suite	^\d+$	0000236		http://purl.allotrope.org/ontologies/quality#AFQ_$1				False																														afo		
allotrope.result	Allotrope result	https://www.allotrope.org/	The result component of the Allotrope ontology suite	^\d+$	0001055		http://purl.allotrope.org/ontologies/result#AFR_$1				False																														afo		
allotrope.role	Allotrope role	https://www.allotrope.org/	The role component of the Allotrope ontology suite	^\d+$	0000248		http://purl.allotrope.org/ontologies/role#AFRL_$1				False																														afo		
alzforum.mutation	Alzforum Mutations	https://www.alzforum.org/mutations	Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease.		app-d678n-tottori		https://www.alzforum.org/mutations/$1			Alzforum_mut	False																												Q111254799				
alzgene	Alzheimer Gene Database	http://www.alzgene.org	The AlzGene database provides a comprehensive, unbiased and regularly updated field synopsis of genetic association studies performed in Alzheimer’s disease. In addition, hundreds of up-to-date meta-analyses are available for all eligible polymorphisms with sufficient data.		88	bertram@helix.mgh.harvard.edu	http://www.alzgene.org/geneoverview.asp?geneid=$1				False																					alzgene											
amoebadb	AmoebaDB	http://amoebadb.org/amoeba/	AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^EDI_\d+$	EDI_244000	oharb@upenn.edu	https://amoebadb.org/amoeba/app/record/gene/$1				False				AMOEBADB								nbdc01207		amoebadb	amoebadb						amoebadb	r3d100012457						Q4747456				
amphibiaweb.species	AmphibiaWeb Species ID	https://amphibiaweb.org	identifier for a species, in the AmphibiaWeb database	^[1-9]\d*$	149		https://amphibiaweb.org/species/$1				False																											P5036					
amphx	The Amphioxus Development and Anatomy Ontology	https://github.com/EBISPOT/amphx_ontology	An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).	^\d+$	1000160	hescriva@obs-banyuls.fr	http://purl.obolibrary.org/obo/AMPHX_$1				False	AMPHX				AMPHX											amphx	amphx	AMPHX										Q112972859				
ans.educationlevel	U.S. Education Level Vocabulary	http://purl.org/ASN/scheme/ASNEducationLevel/	This vocabulary defines education levels for pre-kindergarten through grade 12 for the United States. It also defines general categories for post-secondary education (vocational, professional and life-long learning).		Pre-K	sasutton@uw.edu	http://purl.org/ASN/scheme/ASNEducationLevel/$1				False																																
antibodyregistry	Antibody Registry	http://antibodyregistry.org/	The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.	^\d{6}$	493771	abandrowski@ncmir.ucsd.edu	http://antibodyregistry.org/AB_$1				False				ANTIBODYREGISTRY								nbdc01696		antibodyregistry	antibodyregistry								AB					Q111182712				
antifam	AntiFam	https://www.ebi.ac.uk/interpro/entry/antifam	AntiFam is a database of spurious protein families that have been removed from Pfam due to incorrect hidden Markov model prediction.	^ANF\d{5}$	ANF00001	agb@ebi.ac.uk	https://www.ebi.ac.uk/interpro/entry/antifam/$1				False																										DB-0275						
antweb	AntWeb	http://www.antweb.org/	AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.	^casent\d+(\-D\d+)?$	casent0106247		http://www.antweb.org/specimen.do?name=$1				False				ANTWEB								nbdc01710		antweb	antweb						antweb						P5299					
anzctr	Australian New Zealand Clinical Trials Registry	https://anzctr.org.au	"The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.

In 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)"	^ACTRN\d+$	ACTRN12623000498695		https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=$1			ACTRN	False																												Q65242932				
aop	AOPWiki	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	98		https://aopwiki.org/aops/$1				False				AOP										aop	aop													Q111254792				
aop.events	AOPWiki (Key Event)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	3		https://aopwiki.org/events/$1				False				AOP.EVENTS										aop.events	aop.events																	
aop.relationships	AOPWiki (Key Event Relationship)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	5		https://aopwiki.org/relationships/$1				False				AOP.RELATIONSHIPS										aop.relationships	aop.relationships																	
aop.stressor	AOPWiki (Stressor)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	9		https://aopwiki.org/stressors/$1				False				AOP.STRESSOR										aop.stressor	aop.stressor																	
aopo	Adverse Outcome Pathway Ontology	https://github.com/DataSciBurgoon/aop-ontology	The AOPO provides classes and relationships for the semantic representation of the Adverse Outcome Pathway framework.	^[A-Za-z_]+$	AdverseOutcomePathway		http://aopkb.org/aop_ontology#$1	https://github.com/DataSciBurgoon/aop-ontology/raw/refs/heads/master/aopo.owl			False																																
apaonto	Psychology Ontology	https://bioportal.bioontology.org/ontologies/APAONTO	An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege.		Abdomen	awalker@apa.org	http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1				False	APAONTO				APAONTO																							Q111194686				
apd	Antimicrobial Peptide Database	http://aps.unmc.edu/AP/	The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.	^\d{5}$	01001	gwang@unmc.edu	http://aps.unmc.edu/AP/database/query_output.php?ID=$1				True				APD										apd	apd						apd	r3d100012901										
aphidbase.transcript	AphidBase Transcript	http://www.aphidbase.com/aphidbase	AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.	^ACYPI\d{6}(-RA)?$	ACYPI000159	fabrice.legeai@rennes.inra.fr	http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1				False				APHIDBASE.TRANSCRIPT										aphidbase.transcript	aphidbase.transcript						aphidbase											
apid.interactions	APID Interactomes	http://cicblade.dep.usal.es:8080/APID/	APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.	^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$	P01116		http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1				False				APID.INTERACTIONS										apid.interactions	apid.interactions													Q111047825			uniprot	
apo	Ascomycete phenotype ontology	http://www.yeastgenome.org/	A structured controlled vocabulary for the phenotypes of Ascomycete fungi.	^\d{7}$	0000184	stacia@stanford.edu	http://purl.obolibrary.org/obo/APO_$1				False	APO			APO	APO											apo	apo	APO										Q81661535				
apollosv	Apollo Structured Vocabulary	https://github.com/ApolloDev/apollo-sv	An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.	^\d{8}$	00000443	hoganwr@gmail.com	http://purl.obolibrary.org/obo/APOLLO_SV_$1		https://github.com/ApolloDev/apollo-sv/raw/refs/heads/main/apollo_sv.obo		False	APOLLO_SV				APOLLO-SV											apollo_sv	apollo_sv	APOLLO_SV														
arachnoserver	ArachnoServer	http://www.arachnoserver.org/	ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.	^AS\d{6}$	AS000060	glenn.king@imb.uq.edu.au	http://www.arachnoserver.org/toxincard.html?id=$1				False				ARACHNOSERVER						2578		nbdc01221		arachnoserver	arachnoserver						arachnoserver	r3d100012902				DB-0145		Q4783563				
araport	Arabidopsis Information Portal	https://www.araport.org/	Website with general information about Arabidopsis and functionalities such as a genomic viewer	^AT.G[0-9]{5}$	AT5G05330	hello@vivekkrish.com	https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1				False												nbdc02433		tair.name					768							DB-0221						
archdb	ArchDB	http://sbi.imim.es/archdb	ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.		39421	narcis.fernandez@gmail.com	http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1				False												nbdc01795									archdb											
ardb	Antibiotic Resistance Genes Database	http://ardb.cbcb.umd.edu/	The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.	^[A-Z_]{3}[0-9]{4,}$	CAE46076		http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=$1				True				ARDB										ardb	ardb													Q112205944				
ark	Archival Resource Key	https://arks.org	Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver.	^/*[0-9A-Za-z]+(?:/[\w/.=*+@\$-]*)?(?:\?.*)?$	/53355/cl010066723	jakkbl@gmail.com	http://n2t.net/ark:$1				False			20715	ARK										ark	ark													Q2860403				
aro	Antibiotic Resistance Ontology	https://github.com/arpcard/aro	Antibiotic resistance genes and mutations	^\d{7}$	1000001	mcarthua@mcmaster.ca	http://purl.obolibrary.org/obo/ARO_$1		http://purl.obolibrary.org/obo/aro.obo		False	ARO			ARO	ARO											aro	aro	ARO										Q81661539				
arrayexpress	ArrayExpress	https://www.ebi.ac.uk/arrayexpress/	ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.	^[AEP]-\w{4}-\d+$	E-MEXP-1712	brazma@ebi.ac.uk	https://www.ebi.ac.uk/arrayexpress/experiments/$1				False				ARRAYEXPRESS		ArrayExpress						nbdc00009		arrayexpress	arrayexpress						arrayexpress	r3d100010222						Q106638376				
arrayexpress.platform	ArrayExpress Platform	https://www.ebi.ac.uk/arrayexpress/	ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.	^[AEP]-\w{4}-\d+$	A-GEOD-50		https://www.ebi.ac.uk/arrayexpress/arrays/$1				False				ARRAYEXPRESS.PLATFORM										arrayexpress.platform	arrayexpress.platform																	
arraymap	ArrayMap	https://www.arraymap.org	arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.	^[\w\-:,]{3,64}$	icdom:8500_3	mbaudis@me.com	https://www.arraymap.org/pgx:$1				False				ARRAYMAP										arraymap	arraymap							r3d100012630										
arxiv	arXiv	https://arxiv.org/	arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.	^(\w+(\-\w+)?(\.\w+)?\/?)?\d{4,7}(\.\d+(v\d+)?)?$	0807.4956v1		https://arxiv.org/abs/$1				False			20434	ARXIV										arxiv	arxiv						arxiv						P818	Q118398				
asap	A Systematic Annotation Package for Community Analysis of Genomes	https://www.genome.wisc.edu/tools/asap.htm	ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources.	^[A-Za-z0-9-]+$	ABE-0009634	glasner@svm.vetmed.wisc.edu	http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1				True				ASAP										asap	asap						asap	r3d100010666										
ascl	Astrophysics Source Code Library	http://ascl.net/	The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).	^[0-9\.]+$	1801.012	aallen@ascl.net	http://ascl.net/$1				False				ASCL										ascl	ascl							r3d100011865						Q17013974				
asin	Amazon Standard Identification Number	https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182	Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue.	^[0-9]{10}$	0471491039		https://amzn.com/$1				False				ASIN										asin	asin													Q1753278				
aspgd.locus	Aspergillus Genome Database	http://www.aspgd.org/	The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.	^[A-Za-z_0-9]+$	ASPL0000349247		http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1				True				ASPGD.LOCUS										aspgd.locus	aspgd.locus																	
aspgd.protein	AspGD Protein	http://www.aspgd.org/	The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.	^[A-Za-z_0-9]+$	ASPL0000349247		http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1				True				ASPGD.PROTEIN										aspgd.protein	aspgd.protein																	
asrp	Arabidopsis Small RNA Project	https://asrp.danforthcenter.org/	Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes.		ASRP1423	kasschau@cgrb.oregonstate.edu	http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1				False																					asrp											
astd	ASTD	http://www.ebi.ac.uk/astd/	Identifier of an object from the ASTD database.		ENSG00000136147		http://www.ebi.ac.uk/astd/geneview.html?acc=$1				True										2367											astd										ensembl	
asteraceaegd.genome	Asteraceae Genome Database - Genome	https://cbcb.cdutcm.edu.cn/AGD/	The AGD is an integrated database resource dedicated to collecting the genomic-related data of the Asteraceae family. This collection refers to the genomic data of Asteraceae species.	^\d{4}$	0002	greatchen@cdutcm.edu.cn	https://cbcb.cdutcm.edu.cn/AGD/genome/details/?id=$1				False																																
asteraceaegd.plant	Asteraceae Genome Database - Plant	https://cbcb.cdutcm.edu.cn/AGD/	The AGD is an integrated database resource dedicated to collecting the genomic-related data of the Asteraceae family. This collections refers to the broader phenotypic and genetic resources of Asteraceae plants.	^\d{4}$	0016	greatchen@cdutcm.edu.cn	https://cbcb.cdutcm.edu.cn/AGD/plant/details/?id=$1				False																																
atc	Anatomical Therapeutic Chemical Classification System	http://www.whocc.no/atc_ddd_index/	The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels;  Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level).  The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels.	^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$	A10BA02	whocc@fhi.no	http://www.whocc.no/atc_ddd_index/?code=$1			ATC_code|ATTC	False	ATC		449	ATC	ATC					3103	2.16.840.1.113883.6.73			atc	atc						atc				Atc		P267	Q192093				
atcc	American Type Culture Collection	https://www.lgcstandards-atcc.org	The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.	^([a-zA-Z]+-)?\d+(\.\d)?$	11303		https://www.atcc.org/products/$1			ATCC|ATCC number|ATCC(dna)|ATCC(in host)	False				ATCC		ATCC					2.16.840.1.113883.6.77			atcc	atcc																	
atcvet	Anatomical Therapeutic Chemical Vetinary	http://www.whocc.no/atcvet/atcvet_index/	The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.	^Q[A-Z0-9]+$	QJ51RV02		http://www.whocc.no/atcvet/atcvet_index/?code=$1				False				ATCVET										atcvet	atcvet																	
atfdb.family	Animal TFDB Family	https://guolab.wchscu.cn/AnimalTFDB4	The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.	^\w+$	CUT		https://guolab.wchscu.cn/AnimalTFDB4//#/family_summary/TF/$1				False				ATFDB.FAMILY										atfdb.family	atfdb.family																	
ato	Amphibian taxonomy	http://www.amphibanat.org	Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource	^\d{7}$	0000000	david.c.blackburn@gmail.com	http://purl.obolibrary.org/obo/ATO_$1				True	ATO			ATO	ATO											ato												Q114677879				
atol	Animal Trait Ontology for Livestock	http://www.atol-ontology.com	ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.	^\d{7}$	0002233	pylebail@rennes.inra.fr	http://opendata.inra.fr/ATOL/ATOL_$1	http://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl			False	ATOL	ATOL			ATOL												atol															
atomistic	Atomistic	https://github.com/emmo-repo/domain-atomistic	An EMMO-based domain ontology for atomistic and electronic modelling.		08fd7117-66ac-5b6d-b65e-34a826675877		https://w3id.org/emmo/domain/atomistic#$1				False																								atomistic								
autdb	AutDB	http://autism.mindspec.org/autdb/	AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.	^[A-Z]+[A-Z-0-9]{2,}$	ADA		http://autism.mindspec.org/GeneDetail/$1				True				AUTDB										autdb	autdb																	
authenticus	Authenticus ID	https://www.authenticus.pt	ID of a researcher in Authenticus website	^[A-Z]-[0-9A-Z]{3}-[0-9A-Z]{3}$	P-008-GD6		https://www.authenticus.pt/$1				False																											P7834					
authorea.author	Authorea author ID	https://www.authorea.com	identifier for an author on the Authorea writing service	^[1-9]\d*$	229233		https://www.authorea.com/users/$1				False																											P5039					
babelon	Babelon	https://monarch-initiative.github.io/babelon/	Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation.	^[a-z][a-z0-9_]+[a-z0-9]$	translation_language	nicolas.matentzoglu@gmail.com	https://w3id.org/babelon/$1				False																																
bacdive	BacDive	https://bacdive.dsmz.de/	BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.	^[0-9]+$	131392	lorenz.reimer@dsmz.de	https://bacdive.dsmz.de/strain/$1				False														bacdive	bacdive							r3d100013060					P2946					
bacmap.biog	BacMap Biography	http://bacmap.wishartlab.com/	BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.	^\d+$	1050		http://bacmap.wishartlab.com/organisms/$1				False				BACMAP.BIOG										bacmap.biog	bacmap.biog																	
bacmap.map	BacMap Map	http://bacmap.wishartlab.com/	BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.	^\w+(\_)?\d+(\.\d+)?$	AP011135		http://bacmap.wishartlab.com/maps/$1/index.html				False				BACMAP.MAP										bacmap.map	bacmap.map																	
bactibase	Bactibase	http://bactibase.hammamilab.org	Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria.		BAC045	ismail.fliss@fsaa.ulaval.ca	http://bactibase.hammamilab.org/$1				False																					bactibase	r3d100012755										
bams	Brain Architecture Knowledge Management System Neuroanatomical Ontology	https://bams1.org	BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.								True																																
bao	BioAssay Ontology	http://bioassayontology.org	The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.	^\d{7}$	0002989	bao@miamiedu.onmicrosoft.com	http://www.bioassayontology.org/bao#BAO_$1	http://www.bioassayontology.org/bao/bao_complete.owl		BAO	False	BAO			BAO	BAO									bao	bao		bao	BAO						bao								
bartoc	Basic Register of Thesauri, Ontologies & Classifications	https://bartoc.org	"The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.
The main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)."	^[1-9][0-9]*$	241	voss@gbv.de	https://bartoc.org/en/node/$1				False			2054																								P2689					
battinfo	Battery Interface Ontology	https://big-map.github.io/BattINFO/index.html	A battery interface domain ontology based on EMMO.		74ed2670_657d_4f0b_b0a6_3f13bc2e9c17		https://w3id.org/emmo/domain/battery#battery_$1				False																								battinfo								
bbkg	Blue Brain Project Knowledge Graph	https://portal.bluebrain.epfl.ch	Blue Brain Project's published data as knowledge graphs and Web Studios.	^[-\w]+(?:\/[-\w]+)(?:\/\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b)$	topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a		https://bbp.epfl.ch/nexus/web/studios/public/$1				True														bbkg																		
bbtp	Blue Brain Project Topological sampling Knowledge Graph	https://portal.bluebrain.epfl.ch	"Input data and analysis results for the paper ""Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 )."	^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$	f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a		https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1				True														bbtp																		
bcbc	Beta Cell Biology Consortium	http://www.betacell.org/	One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]	^\d+$	4623		https://scicrunch.org/resolver/RRID:BCBC_$1				False												nbdc00375											BCBC									
bcgo	Beta Cell Genomics Ontology	https://github.com/obi-bcgo/bcgo	An application ontology built for beta cell genomics studies.	^\d{7}$	0000015	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/BCGO_$1	https://github.com/obi-bcgo/bcgo/raw/master/ontology/bcgo.owl			True	BCGO			BCGO	BCGO	BCGO										bcgo	bcgo	BCGO														
bcio	The Behaviour Change Intervention Ontology	https://www.humanbehaviourchange.org/	The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.	^\d{6}$	040000	srodriguez142857@gmail.com	https://w3id.org/BCI-ontology#$1	http://humanbehaviourchange.org/ontology/bcio.owl			False	BCIO				BCIO												bcio															
bco	Biological Collections Ontology	https://github.com/BiodiversityOntologies/bco	An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.	^\d{7}$	0000081	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/BCO_$1				False	BCO	BCO		BCO	BCO				BCO							bco	bco	BCO						bco				Q55118250				
bcrc	BCRC Strain Collection Catalog	https://catalog.bcrc.firdi.org.tw	Cell line collections (Providers)	^\d+$	60316		https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1				False						BCRC																										
bcrj	Banco de Celulas do Rio de Janeiro	https://bcrj.org.br/pesquisa/	Cell line collections (Providers)	^\d{4}$	0278		https://bcrj.org.br/pesquisa/?search=$1				False						BCRJ																										
bdgp.est	Berkeley Drosophila Genome Project EST database	https://www.ncbi.nlm.nih.gov/dbEST/index.html	The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).	^\w+(\.)?(\d+)?$	EY223054.1		https://www.ncbi.nlm.nih.gov/nucest/$1				False				BDGP.EST										bdgp.est	bdgp.est						flybase.est											dbest
bdgp.insertion	BDGP insertion DB	http://flypush.imgen.bcm.tmc.edu/pscreen/	BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.	^\w+$	KG09531	spradling@ciwemb.edu	http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1				False				BDGP.INSERTION										bdgp.insertion	bdgp.insertion						bdgp											
bdsc	Bloomington Drosophila Stock Center	https://bdsc.indiana.edu/about/mission.html	The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.	^\d+$	33607		https://bdsc.indiana.edu/stocks/$1				False														bdsc	bdsc								BDSC									
beetlebase	Tribolium Genome Database -- Insertion	http://beetlebase.org/	BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications.	^TC\d+$	TC010103	sjbrown@ksu.edu	http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1				True				BEETLEBASE								nbdc01820		beetlebase	beetlebase						beetlebase	r3d100010921										
begdb	Benchmark Energy & Geometry Database	http://www.begdb.com	The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.	^[0-9]+$	4214	pavel.hobza@uochb.cas.cz	http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1				False				BEGDB										begdb	begdb							r3d100011166										
beiresources	BEI Resources	https://www.beiresources.org	Cell line collections (Providers)		MRA-253		https://www.beiresources.org/Catalog/cellBanks/$1.aspx			BEI_Resources	False						BEI_Resources																										
bel	Biological Expression Language	https://biological-expression-language.github.io	The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents.		9-1-1 Complex	cthoyt@gmail.com					False																																
bervo	Biological and Environmental Research Variable Ontology	https://github.com/bioepic-data/bervo	A representation of variables appearing in models in the environmental research space.	^\d{7}$	0000001	jhc@lbl.gov	https://w3id.org/bervo/BERVO_$1	https://github.com/bioepic-data/bervo/raw/refs/heads/main/bervo.owl	https://github.com/bioepic-data/bervo/raw/refs/heads/main/bervo.obo		False	BERVO				BERVO																											
bfo	Basic Formal Ontology	http://ifomis.org/bfo/	The upper level ontology upon which OBO Foundry ontologies are built.	^\d{7}$	0000001	phismith@buffalo.edu	http://purl.obolibrary.org/obo/BFO_$1				False	BFO	BFO		BFO	BFO											bfo	bfo	BFO						bfo				Q4866972				
bgee.family	Bgee family	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species.	^(ENSFM|ENSGTV:)\d+$	ENSFM00500000270089		http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1				True				BGEE.FAMILY										bgee.family	bgee.family																	
bgee.gene	Bgee gene	https://www.bgee.org	Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.	^[A-Za-z0-9]+$	FBgn0000015	sebastien.moretti@sib.swiss	https://www.bgee.org/gene/$1				False				BGEE.GENE										bgee.gene	bgee.gene						bgee											
bgee.organ	Bgee organ	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.	^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$	EHDAA:2185		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1				True				BGEE.ORGAN										bgee.organ	bgee.organ																	
bgee.stage	Bgee stage	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.	^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$	HsapDO:0000004		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1				True				BGEE.STAGE										bgee.stage	bgee.stage																	
bibframe	Bibliographic Framework Initiative Vocabulary	https://id.loc.gov/ontologies/bibframe.html	"The Bibframe vocabulary consists of RDF classes and properties used for the description of items cataloged principally by libraries, but may also be used to describe items cataloged by museums and archives. Classes include the three core classes - Work, Instance, and Item - in addition to many more classes to support description. Properties describe characteristics of the resource being described as well as relationships among resources. For example: one Work might be a ""translation of"" another Work; an Instance may be an ""instance of"" a particular Bibframe Work. Other properties describe attributes of Works and Instances. For example: the Bibframe property ""subject"" expresses an important attribute of a Work (what the Work is about), and the property ""extent"" (e.g. number of pages) expresses an attribute of an Instance."		DescriptionLevel	khes@loc.gov	http://id.loc.gov/ontologies/bibframe/$1	https://id.loc.gov/ontologies/bibframe.rdf		bf	False	BIBFRAME				BIBFRAME																			bf								
bibo	The Bibliographic Ontology	http://purl.org/ontology/bibo/	The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web.		authorList	fred@fgiasson.com	http://purl.org/ontology/bibo/$1	https://www.dublincore.org/specifications/bibo/bibo/bibo.rdf.xml			False			17844										bibo																bibo			
bido	Bibliometric Data Ontology	http://www.sparontologies.net/ontologies/bido	An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF.		CategorialBibliometricData	silvio.peroni@unibo.it	http://purl.org/spar/bido/$1				False																		BIDO														
bigg.compartment	BiGG Compartment	http://bigg.ucsd.edu/compartments/	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.	^c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y$	c	zaking@ucsd.edu	http://bigg.ucsd.edu/compartments/$1	https://w3id.org/biopragmatics/resources/bigg.compartment/bigg.compartment.owl	https://w3id.org/biopragmatics/resources/bigg.compartment/bigg.compartment.obo		False				BIGG.COMPARTMENT										bigg.compartment	bigg.compartment																	
bigg.metabolite	BiGG Metabolite	http://bigg.ucsd.edu/universal/metabolites	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites.	^[a-z_A-Z0-9]+(\[[c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y]\])?$	12dgr161	zaking@ucsd.edu	http://bigg.ucsd.edu/models/universal/metabolites/$1	https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.owl	https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.obo		False				BIGG.METABOLITE										bigg.metabolite	bigg.metabolite																	
bigg.model	BiGG Model	http://bigg.ucsd.edu/models	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.	^[a-z_A-Z0-9]+$	iECABU_c1320	zaking@ucsd.edu	http://bigg.ucsd.edu/models/$1	https://w3id.org/biopragmatics/resources/bigg.model/bigg.model.owl	https://w3id.org/biopragmatics/resources/bigg.model/bigg.model.obo		False				BIGG.MODEL										bigg.model	bigg.model																	
bigg.reaction	BiGG Reaction	http://bigg.ucsd.edu/universal/reactions	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.	^[a-z_A-Z0-9]+$	13GS	zaking@ucsd.edu	http://bigg.ucsd.edu/models/universal/reactions/$1	https://w3id.org/biopragmatics/resources/bigg.reaction/bigg.reaction.owl	https://w3id.org/biopragmatics/resources/bigg.reaction/bigg.reaction.obo		False				BIGG.REACTION										bigg.reaction	bigg.reaction																	
bila	Bilateria anatomy	http://4dx.embl.de/4DXpress	This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource.	^\d{7}$	0000000	henrich@embl.de	http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$1				True				BILA												bila	bila				4dxpress							Q114677880				
bind	BIND accession number	http://bind.ca	Accession number of an entry from the BIND database.		98346		http://www.bind.ca/Action?identifier=bindid&idsearch=$1				True				BIND						1129									1		bind											
bindingdb	BindingDB	https://www.bindingdb.org	BindingDB is the first public database of protein-small molecule affinity data.	^\d+$	999	mgilson@health.ucsd.edu	http://www.bindingdb.org/rwd/entry/$1				False				BINDINGDB										bindingdb	bindingdb				50		bindingdb	r3d100012074				DB-0127						
biocarta.pathway	BioCarta Pathway	https://www.biocarta.com/	BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.	^([hm]\_)?\w+Pathway$	h_aktPathway		https://cgap.nci.nih.gov/Pathways/BioCarta/$1				False				BIOCARTA.PATHWAY										biocarta.pathway	biocarta.pathway																	
biocatalogue.service	BioCatalogue Service	https://www.biocatalogue.org/	The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all.	^\d+$	614	carole.goble@manchester.ac.uk	https://www.biocatalogue.org/services/$1				False				BIOCATALOGUE.SERVICE										biocatalogue.service	biocatalogue.service						biocatalogue											
biocompute	Biocompute Object	https://biocomputeobject.org	BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format.	^\d+$	000001	mazumder@gwu.edu	https://biocomputeobject.org/BCO_$1				False																																
biocyc	BioCyc collection of metabolic pathway databases	http://biocyc.org	BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.	^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$	ECOLI:CYT-D-UBIOX-CPLX	pkarp@ai.sri.com	http://biocyc.org/getid?id=$1				False				BIOCYC						2104		nbdc00252		biocyc	biocyc				8		biocyc					DB-0005						
biodeep	BioDeep Database	https://en.panomix.com/	The BioDeep database is a comprehensive database of metabolite information in living organisms: by aggregating metabolite information from multiple public databases and large-scale natural language text mining work, we have built a large scale knowledge network for biological knowledge interpretation. By using the BioDeep database, it is possible to query such large scale metabolic knowledge network.	^\d{11}$	00000000001		https://query.biodeep.cn/metabolite/$1				False														biodeep																		
biodolphin	BioDolphin	https://biodolphin.chemistry.gatech.edu	Identifiers for lipid-protein interactions, including details about protein functions, protein families, lipid classifications, lipid-protein binding affinities, membrane association type, and atomic structures.	^BD\d[a-zA-Z0-9]+-[A-Za-z]-[A-Za-z]-[A-Za-z0-9]+$	BD1a05-A-A-IPM1	andrew.mcshan@chemistry.gatech.edu	https://biodolphin.chemistry.gatech.edu/detail/$1				False																																
biofactoid	Biofactoid	https://biofactoid.org/	Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications.	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	fdb8a927-45c3-48b7-9743-cbb5e16837fa	jeffvin.wong@utoronto.ca	https://biofactoid.org/document/$1				False														biofactoid																		
biogrid	BioGRID	http://thebiogrid.org/	BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.	^\d+$	31623	md.tyers@umontreal.ca	http://thebiogrid.org/$1				False				BIOGRID										biogrid	biogrid				7		biogrid	r3d100010350				DB-0184						
biogrid.interaction	BioGRID Interactions	https://thebiogrid.org/	BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.	^\d+$	2649230	md.tyers@umontreal.ca	https://thebiogrid.org/interaction/$1				False										2628																						
biokc	BioKC	https://wwwen.uni.lu/lcsb	BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML).	^bkc[0-9]*$	bkc640		https://biokb.lcsb.uni.lu/fact/$1				False														biokc																		
biolegend	BioLegend	https://www.biolegend.com	BioLegend is a life sciences supply vendor.	^\d+$	3403		https://www.biolegend.com/Default.aspx?ID=6664&productid=$1				False																																
biolink	Biolink Model	https://biolink.github.io/biolink-model/	A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.	^\S+$	Gene	cjmungall@lbl.gov	https://biolink.github.io/biolink-model/$1				False	BIOLINK				BIOLINK									biolink			biolink															
biomagresbank	BioMagResBank	http://www.bmrb.wisc.edu/	A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids.		10046		http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1				False																					biomagresbank											
biomarkerkb.biomarker	Biomarker Knowledgebase - Biomarker	https://biomarkerkb.org	A disease/condition-specific instantiation of a canonical biomarker	^A(N|O)\d+-\d+$	AN6278-5	mazumder@gwu.edu	https://biomarkerkb.org/biomarker/$1				False																																
biomarkerkb.canonical	Biomarker Knowledgebase - Canonical Biomarker	https://biomarkerkb.org	A canonical biomarker, which describes the composition of a measurement on a change to an entity. For example, the increase in IL6 level	^A(N|O)\d+$	AN6278	mazumder@gwu.edu	https://biomarkerkb.org/canonical/$1				False																																
biominder	Bio-MINDER Tissue Database	https://datalab.rwth-aachen.de/MINDER	Database of the dielectric properties of biological tissues.	^[a-z0-9\-]+$	aef4c195-9cf9-46db-a12a-7cfd1ff3eec3		https://datalab.rwth-aachen.de/MINDER/resource/$1				False				BIOMINDER										biominder	biominder																	
biomodels.db	BioModels Database	https://biomodels.org/	BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.	^((BIOMD|MODEL)\d{10})|(BMID\d{12})$	BIOMD0000000048	mhucka@caltech.edu	https://biomodels.org/$1			BIOMD	False				BIOMODELS.DB										biomodels.db	biomodels.db						biomodels											
biomodels.kisao	Kinetic Simulation Algorithm Ontology	https://github.com/SED-ML/KiSAO	The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.	^\d+$	0000057	jonrkarr@gmail.com	http://purl.obolibrary.org/obo/KISAO_$1			biomodels.kisao|kisao	False	KISAO			KISAO	KISAO									biomodels.kisao	biomodels.kisao	kisao	kisao	KISAO			kisao											
biomodels.teddy	Terminology for Description of Dynamics	http://teddyontology.sourceforge.net/	The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.	^\d+$	0000066	mhucka@caltech.edu	https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1	http://svn.code.sf.net/p/teddyontology/code/teddy/tags/current/teddy-inferred.owl		teddy	False	TEDDY			BIOMODELS.TEDDY	TEDDY									biomodels.teddy	biomodels.teddy		teddy				teddy											
biomodels.vocabulary	SBML RDF Vocabulary	http://biomodels.net/rdf/vocabulary.rdf	Vocabulary used in the RDF representation of SBML models.	^[A-Za-z]+$	rateRule		http://biomodels.net/rdf/vocabulary.rdf#$1				False				BIOMODELS.VOCABULARY										biomodels.vocabulary	biomodels.vocabulary																	
bionumbers	BioNumbers	https://bionumbers.hms.harvard.edu	BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.	^\d+$	104674		https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1				False				BIONUMBERS						2660				bionumbers	bionumbers						bionumbers											
biopixie	biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology	http://pixie.princeton.edu/pixie/	bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate.		12		http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1				True																					biopixie											
bioportal	BioPortal	http://bioportal.bioontology.org/	BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.	^(\d+)|(\w+)$	1046	jgraybeal@stanford.edu	http://bioportal.bioontology.org/ontologies/$1				True				BIOPORTAL								nbdc02144		bioportal	bioportal						bioportal	r3d100012344										
bioproject	BioProject	https://www.ncbi.nlm.nih.gov/bioproject	BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.	^PRJ[DEN][A-Z]\d+$	PRJDB3	mizrachi@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/bioproject/?term=$1				False				BIOPROJECT										bioproject	bioproject							r3d100013330			Bioproject							
bioregistry	Bioregistry	https://bioregistry.io	The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.	^[A-Za-z_][A-Za-z0-9\.\-_]*$	bioregistry	cthoyt@gmail.com	https://bioregistry.io/registry/$1				False			18951																									Q109302681				
bioregistry.collection	Bioregistry Collections	https://bioregistry.io/collection	Manually curated collections of resources stored in the bioregistry	^\d{7}$	0000001	cthoyt@gmail.com	https://bioregistry.io/collection/$1				False																																
bioregistry.registry	Bioregistry Metaregistry	https://bioregistry.io/metaregistry/	The Bioregistry's meta-registry		miriam	cthoyt@gmail.com	https://bioregistry.io/metaregistry/$1				False																																
bioregistry.schema	Bioregistry Schema	https://bioregistry.io/schema	Schema for the export of the Bioregistry as RDF	^\d{7}$	0000001	cthoyt@gmail.com	https://bioregistry.io/schema/#$1				False																																
biorxiv	bioRxiv	https://biorxiv.org	The bioRxiv is a preprint server for biology	^(\d{4}\.\d{2}\.\d{2}\.)?\d{6,8}(v\d{1,3})?$	2022.07.08.499378		https://www.biorxiv.org/content/10.1101/$1				False																											P3951					
biosample	BioSample	https://www.ebi.ac.uk/biosamples/	The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.	^SAM[NED](\w)?\d+$	SAMEA2397676	mizrachi@ncbi.nlm.nih.gov	https://www.ebi.ac.uk/biosamples/sample/$1			biosamples	False				BIOSAMPLE		BioSamples								biosample	biosample							r3d100012828	SAMN		Biosample							
bioschemas	BioSchemas	https://bioschemas.org	Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]		Dataset		https://bioschemas.org/profiles/$1			bioschema|bioschemas_draft	False																																
biosimulations	biosimulations	https://icahn.mssm.edu/	BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools.	^[a-zA-Z0-9_-]{3,}$	Yeast-cell-cycle-Irons-J-Theor-Biol-2009		https://biosimulations.org/projects/$1				False														biosimulations								r3d100013361										
biosimulators	BioSimulators	https://biosimulators.org/	BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).	^[a-zA-Z0-9-_]+$	vcell	karr@mssm.edu	https://biosimulators.org/simulators/$1				False														biosimulators								r3d100013432										
biostudies	BioStudies database	https://www.ebi.ac.uk/biostudies/	The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication.	^S-[A-Z]{4}[\-\_A-Z\d]+$	S-EPMC6266652	ugis@ebi.ac.uk	https://www.ebi.ac.uk/biostudies/studies/$1				False												nbdc02279		biostudies	biostudies							r3d100012627										
biosystems	BioSystems	https://www.ncbi.nlm.nih.gov/Structure/biosystems/docs/biosystems_about.html	The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.	^\d+$	001	lewis.geer@nih.gov	https://www.ncbi.nlm.nih.gov/biosystems/$1				True				BIOSYSTEMS								nbdc00379		biosystems	biosystems						biosystems	r3d100011033										
biotools	BioTools	https://bio.tools/	BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.	^[-A-Za-z0-9\_]*$	bioregistry	haiiu@dtu.dk	https://bio.tools/$1				False				BIOTOOLS										biotools	biotools							r3d100013668										
biotop	BioTop	http://purl.org/biotop	Upper-Level ontology for Biology and Medicine. Compatible with BFO, DOLCE, and the UMLS Semantic Network		attachedTo	stefan.schulz@medunigraz.at	http://purl.org/biotop/biotop.owl#$1	https://raw.githubusercontent.com/BioTopOntology/biotop/master/biotop.owl			False	BIOTOP				BIOTOP								biotop																			
biozil	BIOZIL	https://www.biozol.de/en	Redistributor of bilogics and biomedical supplies		ls-c35719-120		https://www.biozol.de/en/product/$1				False																																
birnlex	Biomedical Informatics Research Network Lexicon	https://bioportal.bioontology.org/ontologies/BIRNLEX	The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.	^\d+$	2023	wbug@ncmir.ucsd.edu	http://uri.neuinfo.org/nif/nifstd/birnlex_$1				False	BIRNLEX				BIRNLEX																											
biro	Bibliographic Reference Ontology	http://www.sparontologies.net/ontologies/biro	An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively.		BibliographicRecord	silvio.peroni@unibo.it	http://purl.org/spar/biro/$1				False													biro																			
bitbucket	Bitbucket	https://www.atlassian.com/	Bitbucket is a Git-based source code repository hosting service owned by Atlassian.	^[0-9A-Za-z-_\.]+/[0-9A-Za-z-_\.]+$	andreadega/systems-biology-compiler		https://bitbucket.org/$1				False														bitbucket								r3d100013478										
bitterdb.cpd	BitterDB Compound	http://bitterdb.agri.huji.ac.il/dbbitter.php	BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.	^\d+$	46		http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1				False				BITTERDB.CPD										bitterdb.cpd	bitterdb.cpd																	
bitterdb.rec	BitterDB Receptor	http://bitterdb.agri.huji.ac.il/dbbitter.php	BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.	^\d+$	1		http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1				False				BITTERDB.REC										bitterdb.rec	bitterdb.rec																	
bko	SBGN Bricks data and ontology	http://www.sbgnbricks.org/	SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way.	^\d+$	0000204	adrienrougny@gmail.com	http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1				False	BKO				BKO																											
blastrule	BlastRule	https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/	BlastRules (identifiers starting with the “NBR” prefix) are a type of evidence for functional classification of proteins based on BLAST (Basic Local Alignment Search Tool). A BlastRule consists of one or more 'model' proteins with known biological function, and BLAST identity and coverage cutoffs. Any protein aligning to a model protein above the cutoffs is considered a BlastRule hit. [from homepage]	^NBR\d+$	NBR016799		https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/$1				False																																
bmbf.glossary	German Federal Ministry of Education and Research Glossary	https://www.datenportal.bmbf.de/portal/de/glossary.html	A german-language glossary provides you with definitions of the terms used in the portal in the fields of education, science, research and innovation and is updated regularly.		G1		https://www.datenportal.bmbf.de/portal/de/$1.html				False																																
bmont	Biomarker Ontology	https://github.com/SCAI-BIO/BiomarkerOntology	An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects.		0000006	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/BMONT_$1				False	BMONT				BMONT											bmont	bmont	BMONT														
bmrb.entry	Biological Magnetic Resonance Data Bank	https://bmrb.io/	BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.	^(bmr|bmse|bmst)?[0-9]{1,6}$	15000	markley@nmrfam.wisc.edu	https://bmrb.io/data_library/summary/index.php?bmrbId=$1			bmrb	False												nbdc00380		bmrb								r3d100010191				DB-0256						
bmrb.restraint	NMR Restraints Grid	https://restraintsgrid.bmrb.io/NRG/MRGridServlet	The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively.	^\d+$	28789		https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1				False																																
bodc.cf	Climate and Forecast Standard Names	http://vocab.nerc.ac.uk/collection/P07/current	Ontology representation of the Climate and Forecast (CF) standard names parameter vocabulary, which is intended for use with climate and forecast data in the atmosphere, surface and ocean domains. Every CF parameter is captured as a SKOS concept.This vocabulary is a simplified version of the CF vocabulary P07 from the NERC Vocabulary Server (NVS), National Oceanography Centre - British Oceanographic Data Centre (BODC), https://vocab.nerc.ac.uk.		MIKUZ25U		http://vocab.nerc.ac.uk/collection/P07/current/$1				False																								cf								
bodc.sdn	SeaDataNet device categories	http://vocab.nerc.ac.uk/collection/L05	Terms used to classify groups of sensors, instruments, sources of algorithmically computed data (numerical models) or samplers (collectors of water, SPM, sediment, rock, air or biota samples).		101		http://vocab.nerc.ac.uk/collection/L05/current/$1				False																								sdn								
bodc.unit	British Oceanographic Data Centre data storage units	https://vocab.nerc.ac.uk/collection/P06/current/	terms approved for use by BODC to describe the measurement units for data held in its repositories.		UMKS		http://vocab.nerc.ac.uk/collection/P06/current/$1			nvs.P06	False																																
bold.taxonomy	BOLD Systems taxon	http://www.boldsystems.org/	The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.	^\d+$	27267	phebert@uoguelph.ca	http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1				False				BOLD.TAXONOMY										bold.taxonomy	bold.taxonomy						bold						P3606					
bonsai	Big Open Network of Sustainability Assessment Information Ontology	https://github.com/BONSAMURAIS/BONSAI-ontology-RDF-framework	The BONSAI ontologies provides elements of description for product footprint concepts defined in the bonsai.uno data base		Activity		http://ontology.bonsai.uno/core#$1				False																								bont								
bot	Building Topology Ontology	https://w3c-lbd-cg.github.io/bot/	The Building Topology Ontology (BOT) is a minimal ontology for describing the core topological concepts of a building.		Building		https://w3id.org/bot#$1				False																								bot								
bpdb	Bio-Pesticides DataBase	https://sitem.herts.ac.uk/aeru/bpdb/index.htm	Database of biopesticides maintained by the University of Hertfordshire	^\d+$	2404		https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm				False																																
brenda	BRENDA Enzyme	https://www.brenda-enzymes.org/	BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.	^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$	1.1.1.1	D.Schomburg@tu-braunschweig.de	https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1				False				BRENDA										brenda	brenda				51		brenda	r3d100010616									ec	
brenda.ligand	BRENDA Ligand	https://www.brenda-enzymes.de/ligand.php	Information for ligands in the BRENDA database.	^\d+$	278		https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1				False																																
brenda.ligandgroup	BRENDA Ligand Group	https://www.brenda-enzymes.de/ligand.php	Information for ligand groups (chemical classes).	^\d+$	18030		https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1				False																																
brick	Brick Ontology	https://brickschema.org/	"Brick is an open-source effort to standardize semantic descriptions of the physical, logical and virtual assets in buildings and the relationships between them. Brick consists of an extensible dictionary of terms and concepts in and around buildings, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of Brick with existing tools and databases. Through the use of powerful Semantic Web technology, Brick can describe the broad set of idiosyncratic and custom features, assets and subsystems found across the building stock in a consistent matter. Adopting Brick as the canonical description of a building enables the following: 1) Brick lowers the cost of deploying analytics, energy efficiency measures and intelligent controls across buildings, 2) Brick presents an integrated, cross-vendor representation of the multitude of subsystems in modern buildings: HVAC, lighting, fire, security and so on, 3) Brick simplifies the development of smart analytics and control applications, and 4) Brick reduces the reliance upon the non-standard, unstructured labels endemic to building management systems.
"		Ablutions_Room		https://brickschema.org/schema/Brick#$1				False																								brick								
bridgedb	BridgeDb Vocabulary	https://bridgedb.org	A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc.		hasPrimaryUriPattern		http://vocabularies.bridgedb.org/ops#$1				False																																
broad	Broad Fungal Genome Initiative	https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/	Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.	^S\d+$	S7000002168151102		https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1				False				BROAD										broad	broad																	
bs	Biosapiens Protein Feature Ontology	https://github.com/The-Sequence-Ontology/SO-Ontologies	SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library.	^\d+$	00042		https://biopragmatics.github.io/providers/bs/$1		https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/Ontology_Files/subsets/biosapiens.obo		False																																
bspo	Biological Spatial Ontology	https://github.com/obophenotype/biological-spatial-ontology	An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.	^\d{7}$	0000029	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/BSPO_$1		https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo		False	BSPO			BSPO	BSPO											bspo	bspo	BSPO										Q81661546				
bto	BRENDA Tissue Ontology	http://www.brenda-enzymes.org	The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.	^\d{7}$	0000590	c.dudek@tu-braunschweig.de	http://purl.obolibrary.org/obo/BTO_$1			BTO	False	BTO			BTO	BTO	BTO								bto	bto	bto	bto	BTO			bto			bto			P5501	Q4836352				
bugbase.expt	BugBase Expt	http://bugs.sgul.ac.uk/E-BUGS	BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments.	^\d+$	288		http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=$1				True				BUGBASE.EXPT										bugbase.expt	bugbase.expt																	
bugbase.protocol	BugBase Protocol	http://bugs.sgul.ac.uk/E-BUGS	BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols.	^\d+$	67		http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1				True				BUGBASE.PROTOCOL										bugbase.protocol	bugbase.protocol																	
building	Building Ontology	https://bimerr.iot.linkeddata.es/def/building/	The Building ontology has been developed to perform as the core module of the BIMERR Ontology Network, containing information related to building topology, and components. The model is constructed as an extention of the BOT ontology that provides the vocabulary to describe the topology of a building as well as the relationships between their main components such as zones, spaces, and building elements. The taxonomy of building components is based on the proposed by the IFC 4.1 standard.		AirConditioningUnit		http://bimerr.iot.linkeddata.es/def/building#$1				False	building																							building								
bykdb	Bacterial Tyrosine Kinase Database	https://bykdb.lyon.inserm.fr/BYKdb/BYKdbIndex	The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases,  providing structural and functional information.	^[A-Z0-9]+$	A0A009HB13	cozzone@ibcp.fr	https://bykdb.lyon.inserm.fr/data/html/annotated/$1.html				False				BYKDB										bykdb	bykdb						bykdb										uniprot	
c4o	Citation Counting and Context Characterisation Ontology	http://www.sparontologies.net/ontologies/c4o	An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date.		InTextReferencePointer	silvio.peroni@unibo.it	http://purl.org/spar/c4o/$1				False													c4o																			
cabi	CABI Digital Library	https://www.cabidigitallibrary.org	Research and learning in agriculture, the environment and the applied life sciences	^\d+$	20000614040		https://www.cabi.org/cabebooks/ebook/$1				False																																
cabri	Common Access to Biological Resources and Information Project	http://www.cabri.org/	CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it.	^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$	dsmz_mutz-id:ACC 291	paolo.romano@hsanmartino.it	http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]				False				CABRI						2380				cabri	cabri																	
cadsr	Cancer Data Standards Registry and Repository	https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki	The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR.	^[0-9]*$	3771992		https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]				False														cadsr	cadsr																	
caloha	CALIPHO Group Ontology of Human Anatomy	https://github.com/calipho-sib/controlled-vocabulary	This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.	^TS-\d+$	TS-0001	Paula.Duek@sib.swiss	https://www.nextprot.org/term/$1		https://raw.githubusercontent.com/calipho-sib/controlled-vocabulary/master/caloha.obo		False																																
cameo	Continuous Automated Model Evaluation	https://cameo3d.org	The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on  tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB.	^[0-9\-_]+$	2019-08-03_00000089_1	torsten.schwede@unibas.ch	https://www.cameo3d.org/sp/targets/target/$1				False				CAMEO										cameo	cameo																	
cao	Chemical Analysis Ontology	https://champ.stuchalk.domains.unf.edu	An ontology developed as part of the Chemical Analysis Metadata Project (ChAMP) as a resource to semantically annotate standards developed using the ChAMP platform. (source: CAO ontology)	^\d+$	000064	williams.antony@epa.gov	http://champ-project.org/images/ontology/cao.owl#CAO_$1				False	CAO		20701		CAO												cao							cao								
caps	CAPS-DB	http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home	CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.	^\d+$	434		http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1				False				CAPS										caps	caps																	
carnegie.stage	Carnegie Stage	https://embryology.med.unsw.edu.au/embryology/index.php/Carnegie_Stages	One of the 23 stages of embryo development	^\d+$	20		https://embryology.med.unsw.edu.au/embryology/index.php/Carnegie_Stages#Stage_$1				False																																
caro	Common Anatomy Reference Ontology	https://github.com/obophenotype/caro/	The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies.	^\d{7}$	0000000	haendel@ohsu.edu	http://purl.obolibrary.org/obo/CARO_$1		http://purl.obolibrary.org/obo/caro.obo		True	CARO			CARO	CARO											caro	caro	CARO										Q55118319				
cas	CAS Registry Number	https://commonchemistry.cas.org/	CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information.	^\d{1,7}\-\d{2}\-\d$	50-00-0	ajacobs@cas.org	https://commonchemistry.cas.org/detail?cas_rn=$1			CASID|CAS_RN|SECONDARY_CAS_RN|cas_id	False				CAS			000446			1002	2.16.840.1.113883.6.61			cas	cas						cas						P231					
casspc	Eschmeyer's Catalog of Fishes	https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp		^\d+$	5359		https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1			CASGEN	True																																
cath	CATH Protein Structural Domain Superfamily	http://www.cathdb.info	CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.	^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$	1.10.8.10	c.orengo@ucl.ac.uk	http://www.cathdb.info/cathnode/$1				False				CATH						2700		nbdc01888		cath	cath						cath	r3d100012629										
cath.domain	CATH domain	http://www.cathdb.info/	The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains.	^\w+$	1cukA01		http://www.cathdb.info/domain/$1				False				CATH.DOMAIN						1040				cath.domain	cath.domain																	
cath.superfamily	CATH superfamily	http://www.cathdb.info/	The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and  Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.	^\d+(\.\d+(\.\d+(\.\d+)?)?)?$	1.10.10.200		http://www.cathdb.info/cathnode/$1				False				CATH.SUPERFAMILY										cath.superfamily	cath.superfamily															cath		
cattleqtldb	Animal Genome Cattle QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.	^\d+$	4685		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False				CATTLEQTLDB										cattleqtldb	cattleqtldb						cattleqtldb									qtldb		
cazy	Carbohydrate Active EnZYmes	http://www.cazy.org/	The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.	^(GT|GH|PL|CE|CBM)\d+(\_\d+)?$	GT10	nicolas.terrapon@univ-amu.fr	http://www.cazy.org/$1.html				False				CAZY										cazy	cazy						cazy	r3d100012321				DB-0136						
cba	Chinese Biological Abstracts	http://www.cba.ac.cn	CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE.	^\d+$	375364		https://europepmc.org/article/CBA/$1				False																																
cbioportal	The cBioPortal for Cancer Genomics	http://www.cbioportal.org	The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.	^[a-z0-9\_]+$	laml_tcga_pub	gaoj@mskcc.org	https://www.cbioportal.org/study/summary?id=$1				False														cbioportal	cbioportal																	
cc	Creative Commons Rights Expression Language	https://creativecommons.org/ns	The Creative Commons Rights Expression Language (ccREL) lets you describe copyright licenses in RDF. For more information on describing licenses in RDF and attaching those descriptions to digital works, see [ccREL](https://wiki.creativecommons.org/CC_REL) in the [Creative Commons wiki](https://wiki.creativecommons.org/).	^\w+$	Work		https://creativecommons.org/ns#$1			ccrel	False	CC												cc											ccrel					cc			
cc.legacy	Creative Commons Schema	https://web.resource.org/cc/	A precursor that was later replaced with the Creative Commons Rights Expression Language (ccREL)		License		http://web.resource.org/cc/$1				True																																
ccdc	CCDC Number	https://www.ccdc.cam.ac.uk/	The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC.	^\d{6,7}$	1829126		https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG				False														ccdc																		
ccds	Consensus CDS	http://www.ncbi.nlm.nih.gov/CCDS/	The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.	^CCDS\d+(\.\d+)?$	CCDS12976	murphyte@ncbi.nlm.nih.gov	http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1				False				CCDS								nbdc00023		ccds	ccds						ccds				Ccds	DB-0187						
ccf	Human Reference Atlas Common Coordinate Framework Ontology	https://bioportal.bioontology.org/ontologies/CCF	The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA).  It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them.  The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible.  All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA.	^\S+$	extraction_set	katy@indiana.edu	https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1				False	CCF				CCF												ccf					r3d100012657										
ccle	Cancer Cell Line Encyclopedia Cells	https://www.cbioportal.org/study/summary?id=ccle_broad_2019	Datasets around different cancer cell lines generated by the Broad Institute and Novartis		BT20_BREAST	wsellers@broadinstitute.org	https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1	https://w3id.org/biopragmatics/resources/ccle/ccle.owl	https://w3id.org/biopragmatics/resources/ccle/ccle.obo	ccle.cell	False						CCLE																										
cco	Cell Cycle Ontology	http://www.semantic-systems-biology.org/apo	The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.	^\w+$	0000003	kuiper@bio.ntnu.no	https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1	https://www.bio.ntnu.no/ontology/CCO/cco.owl	https://www.bio.ntnu.no/ontology/CCO/cco.obo		False	CCO		20461	CCO	CCO									cco	cco		cco				cco											
ccrid	National Experimental Cell Resource Sharing Platform	http://www.cellresource.cn	Cell line databases/resources		4201PAT-CCTCC00348		http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1				False						CCRID																										
ccso	Curriculum Course Syllabus Ontology	https://vkreations.github.io/CCSO/	CCSO is an educational ontology acting as a data model for concepts and entities within an academic setting, enabling also the annotation of potentially available resources. The ontology aims to conceptualize educational entities within Curriculum and Syllabus with appropriate coverage and quality, in order to support rich services on top for improving curriculum management and automatically enabling syllabus semantic processes. (from homepage)		AcademicStaff	merocknyxta@gmail.com	https://w3id.org/ccso/ccso#$1	https://vkreations.github.io/CCSO/CCSO_071owl.owl			False																																
cdao	Comparative Data Analysis Ontology	https://github.com/evoinfo/cdao	a formalization of concepts and relations relevant to evolutionary comparative analysis	^\d{7}$	0000072	balhoff@renci.org	http://purl.obolibrary.org/obo/CDAO_$1				False	CDAO	CDAO		CDAO	CDAO											cdao	cdao	CDAO										Q55118328				
cdd	Conserved Domain Database at NCBI	https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd	The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.	^(cd)?\d{5}$	cd00400		https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1				False				CDD						2666		nbdc00401		cdd	cdd						cdd	r3d100012041				DB-0214						
cdno	Compositional Dietary Nutrition Ontology	https://cdno.info/	The CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet. These terms are intended primarily to be associated with datasets that quantify concentration of chemical nutritional components derived from samples taken from any stage in the production of food raw materials (including from crops, livestock, fisheries) and through processing and supply chains. Additional knowledge associated with these dietary sources may be represented by terms that describe functional, physical and other attributes. Whilst recognising that dietary nutrients within food substrates may be present as complex and dynamic physical and chemical structures or mixtures, CDNO focuses on components typically quantified in an analytical chemistry laboratory. The primary CDNO class ‘dietary nutritional component’ contains hierarchical sets of terms organised to reflect commonly used classifications of chemical food composition. This class does not represent an exhaustive classification of chemical components, but focuses on structuring terms according to widely accepted categories. This class is independent of, but may be used in conjunction with, classes that describe ‘analytical methods’ for quantification, ‘physical properties’ or ‘dietary function’. Quantification data may be used and reported in research literature, to inform food composition tables and labelling, or for supply chain quality assurance and control. More specifically, terms within the ‘nutritional component concentration’ class may be used to represent quantification of components described in the ‘dietary nutritional component’ class. Concentration data are intended to be described in conjunction with post-composed metadata concepts, such as represented by the Food Ontology (FoodOn) ‘Food product by organism’, which derives from some food or anatomical entity and a NCBI organismal classification ontology (NCBITaxon) entity. The common vocabulary and relationships defined within CDNO should facilitate description, communication and exchange of material entity-derived nutritional composition datasets typically generated by analytical laboratories. The organisation of the vocabulary is structured to reflect common categories variously used by those involved in crop, livestock or other organismal production, associated R&D and breeding, as well as the food processing and supply sector, and nutritionists, inlcuding compilers and users of food composition databases. The CDNO therefore supports characterisation of genetic diversity and management of biodiversity collections, as well as sharing of knowledge relating to dietary composition between a wider set of researchers, breeders, farmers, processors and other stakeholders. Further development of the functional class should also assist in understanding how interactions between organismal genetic and environmental variation contribute to human diet and health in the farm to fork continuum.	^\d{7}$	0000013	landreshdz@gmail.com	http://purl.obolibrary.org/obo/CDNO_$1				False	CDNO	CDNO			CDNO											cdno	cdno	CDNO										Q111272479				
cdpd	Canadian Drug Product Database	https://www.canada.ca/en/health-canada/services/drugs-health-products/drug-products/drug-product-database.html	The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).	^\d+$	63250		https://health-products.canada.ca/dpd-bdpp/info?lang=eng&code=$1				False				CDPD										cdpd	cdpd																	
cdt	Current Dental Terminology	https://www.ada.org/publications/CDT	"The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.

Note that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D."	^\d{7}$	1000001			https://raw.githubusercontent.com/oral-health-and-disease-ontologies/ohd-ontology/f19378ff192b6f9ea16133e85671e8359fc371cd/src/ontology/archive/CDTCodes%20as%20Classes_pruned.owl			False			20299								2.16.840.1.113883.6.116																					
ceds.element	Common Entity Data Standards - Domain Entity Schema	https://ceds.ed.gov/domainEntitySchema.aspx	The Common Entity Data Standards (CEDS) Domain Entity Schema (DES) provides a hierarchy of domains, entities, categories, and elements. It is intended for use primarily by people as an index to search, map, and organize elements in a logical way. [from homepage]	^\d+$	000254		https://ceds.ed.gov/element/$1				False																																
ceds.learning_resource_type	CEDS Learning Resource Type	https://ceds.ed.gov/element/000928	A vocabulary for learning resource types		AlternateAssessment		https://ceds.ed.gov/element/000928#$1				False																																
cell_biolabs	Cell Biolabs cell line products	https://www.cellbiolabs.com	Cell line collections (Providers)		AKR-270		https://www.cellbiolabs.com/search?keywords=$1				False						Cell_Biolabs																										
cell_model_passport	Sanger Cell Model Passports	https://cellmodelpassports.sanger.ac.uk/	Cell line databases/resources		SIDM01262		https://cellmodelpassports.sanger.ac.uk/passports/$1				False						Cell_Model_Passport																										
cellbank.australia	CellBank Australia	https://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/	CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.		ab-1-ha		https://www.cellbankaustralia.com/$1.html				False						CBA																										
cellimage	Cell Image Library	http://cellimagelibrary.org/	The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.	^\d+$	24801	dorloff@ncmir.ucsd.edu	http://cellimagelibrary.org/images/$1				False				CELLIMAGE										cellimage	cellimage						cellimage	r3d100000023										
cellopub	Cellosaurus Publication	https://web.expasy.org/cellosaurus/	Cellosaurus identifeirs for publications, like Pubmed	^CLPUB\d+$	CLPUB00496		https://web.expasy.org/cellosaurus/cellopub/$1				False						CelloPub																										
cellosaurus	Cellosaurus	https://cellosaurus.org	The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.	^[A-Z0-9]{4}$	0440	Amos.Bairoch@sib.swiss	https://www.cellosaurus.org/CVCL_$1		https://ftp.expasy.org/databases/cellosaurus/cellosaurus.obo	CVCL	False				CELLOSAURUS		Cellosaurus						nbdc02180		cellosaurus	cellosaurus							r3d100013293	CVCL		Cellosaurus		P3289	Q21014462				
cellosaurus.resource	Cellosaurus Registry	https://web.expasy.org/cellosaurus/	The set of prefixes used in the Cellosaurus resource		4DN		https://bioregistry.io/metaregistry/cellosaurus/$1				False																																
cellrepo	Cell Version Control Repository	https://www.cellrepo.com/	The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines	^[0-9]+$	82		https://www.cellrepo.com/repositories/$1				False														cellrepo																		
cellxgene.collection	Chan Zuckerberg CELLxGENE Collection	https://cellxgene.cziscience.com/collections	"Assigns identifiers to collections of datasets indexed by CELLxGENE.

CELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types."	^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$	436154da-bcf1-4130-9c8b-120ff9a888f2	acarr@chanzuckerberg.com	https://cellxgene.cziscience.com/collections/$1				False																																
cellxgene.dataset	Chan Zuckerberg CELLxGENE Dataset	https://cellxgene.cziscience.com	Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments		f72958f5-7f42-4ebb-98da-445b0c6de516	acarr@chanzuckerberg.com	https://cellxgene.cziscience.com/e/$1				False																																
cemo	The COVID-19 epidemiology and monitoring ontology	https://github.com/NuriaQueralt/covid19-epidemiology-ontology	The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response.	^[0-9a-z_-]+$	secondary_attack_rate	n.queralt_rosinach@lumc.nl	https://biopragmatics.github.io/providers/cemo/$1	https://raw.githubusercontent.com/NuriaQueralt/covid19-epidemiology-ontology/main/owl/cemo.owl			False																																
ceph	Cephalopod Ontology	https://github.com/obophenotype/cephalopod-ontology	An anatomical and developmental ontology for cephalopods	^\d{7}$	0000109	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/CEPH_$1		https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo		True	CEPH			CEPH	CEPH											ceph	ceph	CEPH										Q104030182				
cert	The Cert Ontology	http://www.w3.org/ns/auth/cert#	Ontology for Certificates and crypto stuff.		Certificate						False													cert																cert			
cessda	Consortium of European Social Science Data Archives Vocabulary	https://vocabularies.cessda.eu	A vocabulary service for the social sciences, covering the Data Documentation Initiative (DDI) is an international standard for describing data produced by surveys and other observational methods in the social, behavioural, economic, and health sciences.		TopicClassification		https://vocabularies.cessda.eu/vocabulary/$1				False																																
cessda.cdcpublishernames	CDC Publisher Names	https://vocabularies.cessda.eu/vocabulary/CdcPublisherNames	Names of organisations providing metadata for CESSDA Data Catalogue.		AUSSDA		https://vocabularies.cessda.eu/vocabulary/CdcPublisherNames?lang=en#code_$1				False																																
cessda.cessdadatacataloguecollections	CESSDA Data Catalogue Collections	https://vocabularies.cessda.eu/vocabulary/CESSDADataCatalogueCollections	This vocabulary holds the definitions and descriptions of the collections included in the CESSDA Data Catalogue.		BY-COVID		https://vocabularies.cessda.eu/vocabulary/CESSDADataCatalogueCollections?lang=en#code_$1				False																																
cessda.cessdapersistentidentifiertypes	CESSDA Persistent Identifier Types	https://vocabularies.cessda.eu/vocabulary/CessdaPersistentIdentifierTypes	Lists the types of persistent identifiers that CESSDA accepts as study level PIDs in its data catalogue.		ARK		https://vocabularies.cessda.eu/vocabulary/CessdaPersistentIdentifierTypes?lang=en#code_$1				False																																
cessda.countrynamesandcodes	Country Names and Codes	https://vocabularies.cessda.eu/vocabulary/CountryNamesAndCodes	ISO 3166-1 alpha-2 country codes and names.		AF		https://vocabularies.cessda.eu/vocabulary/CountryNamesAndCodes?lang=en#code_$1				False																																
cessda.topicclassification	CESSDA Topic Classification	https://vocabularies.cessda.eu/vocabulary/TopicClassification	A typology of main themes or subjects of data.		Demography		https://vocabularies.cessda.eu/vocabulary/TopicClassification?lang=en#code_$1				False																																
cgd	Candida Genome Database	http://www.candidagenome.org/	The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.	^CAL\d{7}$	CAL0003079	gsherloc@stanford.edu	http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1				False				CGD								nbdc00391		cgd	cgd						cgd	r3d100010617				DB-0126						
cghdb	CGH Data Base	https://web.archive.org/web/20190222051223/http://www.cghtmd.jp/CGHDatabase/index_e.jsp	Cell line databases/resources		300165/p13898_2106T						False						CGH-DB																										
cgnc	Chicken Gene Nomenclature Consortium	http://birdgenenames.org	Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)	^\d+$	10087	fionamcc@arizona.edu	http://birdgenenames.org/cgnc/GeneReport?id=$1	https://w3id.org/biopragmatics/resources/cgnc/cgnc.owl	https://w3id.org/biopragmatics/resources/cgnc/cgnc.obo	BirdBase|CGNC	False						CGNC															cgnc	r3d100012429										
cgsc	Coli Genetic Stock Center	http://cgsc.biology.yale.edu/index.php	The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.	^\d+$	74	kelly.hughes@utah.edu	http://cgsc.biology.yale.edu/Site.php?ID=$1				True				CGSC										cgsc	cgsc						cgsc	r3d100010585										
charprot	CharProt	http://www.jcvi.org/charprotdb	CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.	^CH_\d+$	CH_001923		http://www.jcvi.org/charprotdb/index.cgi/view/$1				True				CHARPROT										charprot	charprot																	
chebi	Chemical Entities of Biological Interest	http://www.ebi.ac.uk/chebi	Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.	^\d+$	138488	amalik@ebi.ac.uk	http://purl.obolibrary.org/obo/CHEBI_$1			CHEBI|CHEBIID|ChEBI	False	CHEBI		558	CHEBI	CHEBI	ChEBI	000407			1174		nbdc00027		chebi	chebi	chebi	chebi	CHEBI			chebi	r3d100012626		chebi	Chebi		P683	Q902623				
chembank	ChemBank	http://chembank.broad.harvard.edu	ChemBank is a public, web-based informatics environment created by the Broad Institute's Chemical Biology Program and funded in large part by the National Cancer Institute's Initiative for Chemical Genetics (ICG).		1000000		http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$1				True				CHEMBANK																	chembank											
chembiosys.assay	ChemBioSys Assay	https://data.chembiosys.de/assays	A assay in the ChemBioSys data platform	^\d+$	31		https://data.chembiosys.de/assays/$1				False																																
chembiosys.data	ChemBioSys Dataset	https://data.chembiosys.de/data_files	A dataset in the ChemBioSys data platform	^\d+$	103		https://data.chembiosys.de/data_files/$1				False																																
chembiosys.institution	ChemBioSys Institution	https://data.chembiosys.de/institutions	An institution in the ChemBioSys data platform	^\d+$	13		https://data.chembiosys.de/institutions/$1				False																																
chembiosys.investigation	ChemBioSys Investigation	https://data.chembiosys.de/investigations	An investigation in the ChemBioSys data platform	^\d+$	27		https://data.chembiosys.de/investigations/$1				False																																
chembiosys.model	ChemBioSys Model	https://data.chembiosys.de/models	A model in the ChemBioSys data platform	^\d+$	11		https://data.chembiosys.de/models/$1				False																																
chembiosys.organism	ChemBioSys Organism	https://data.chembiosys.de/	An organism in the ChemBioSys data platform	^\d+$	604090889		https://data.chembiosys.de/organisms/$1				False																																
chembiosys.project	ChemBioSys Project	https://data.chembiosys.de/projects	A project in the ChemBioSys data platform	^\d+$	15		https://data.chembiosys.de/projects/$1				False																																
chembiosys.publication	ChemBioSys Publication	https://data.chembiosys.de/publications	A publication in the ChemBioSys data platform	^\d+$	157		https://data.chembiosys.de/publications/$1				False																																
chembiosys.strain	ChemBioSys Strain	https://data.chembiosys.de/strains	A strain in the ChemBioSys data platform	^\d+$	33		https://data.chembiosys.de/strains/$1				False																																
chembiosys.study	ChemBioSys Study	https://data.chembiosys.de/studies	A study in the ChemBioSys data platform	^\d+$	20		https://data.chembiosys.de/studies/$1				False																																
chembiosys.tag	ChemBioSys Tag	https://data.chembiosys.de/tags	A tag in the ChemBioSys data platform	^\d+$	59		https://data.chembiosys.de/tags/$1				False																																
chembl	ChEMBL	https://www.ebi.ac.uk/chembl	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL4303805	dmendez@ebi.ac.uk	https://www.ebi.ac.uk/chembl/id_lookup/$1			ChEMBL|ChEMBL_ID|chembl	False							000412					nbdc02555		chembl							chembl	r3d100010539				DB-0174						
chembl.cell	ChEMBL database of bioactive drug-like small molecules - Cell lines section	https://www.ebi.ac.uk/chembldb	Chemistry resources	^CHEMBL\d+$	CHEMBL3307800	dmendez@ebi.ac.uk	https://www.ebi.ac.uk/chembl/cell_line_report_card/$1			ChEMBL-Cells	False						ChEMBL-Cells																										
chembl.compound	ChEMBL Compound	https://www.ebi.ac.uk/chembldb/	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL465070	dmendez@ebi.ac.uk	https://www.ebi.ac.uk/chembl/compound/inspect/$1	https://w3id.org/biopragmatics/resources/chembl.compound/chembl.compound.owl	https://w3id.org/biopragmatics/resources/chembl.compound/chembl.compound.obo		False				CHEMBL.COMPOUND						2646				chembl.compound	chembl.compound										ChemblCompound		P592					
chembl.mechanism	ChEMBL mechanism	https://www.ebi.ac.uk/chembl	This controlled vocabulary contains terms to describe the mechanism of action for a chemical-target interaction. The terms can be retrieved from ACTION_TYPE table in ChEMBL's SQL dump and are used to annotate the DRUG_MECHANISM table. Because these aren't really identifiers, they are transformed by lowercasing and replacing spaces with dashes to form 'identifiers'. The pattern in the Bioregistry record contains an enumeration of the 33 allowed values as of ChEMBL v35.	^activator|agonist|allosteric-antagonist|antagonist|antisense-inhibitor|binding-agent|blocker|chelating-agent|cross-linking-agent|degrader|disrupting-agent|exogenous-gene|exogenous-protein|hydrolytic-enzyme|inhibitor|inverse-agonist|methylating-agent|modulator|negative-allosteric-modulator|negative-modulator|opener|other|oxidative-enzyme|partial-agonist|positive-allosteric-modulator|positive-modulator|proteolytic-enzyme|reducing-agent|releasing-agent|rnai-inhibitor|sequestering-agent|stabiliser|substrate|vaccine-antigen$	activator	dmendez@ebi.ac.uk					False																														chembl		
chembl.target	ChEMBL target	https://www.ebi.ac.uk/chembldb/	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL3467	dmendez@ebi.ac.uk	https://www.ebi.ac.uk/chembl/target/inspect/$1	https://w3id.org/biopragmatics/resources/chembl.target/chembl.target.owl	https://w3id.org/biopragmatics/resources/chembl.target/chembl.target.obo	ChEMBL-Targets	False				CHEMBL.TARGET		ChEMBL-Targets								chembl.target	chembl.target										ChemblTarget							
chembl.tissue	ChEMBL tissue	https://www.ebi.ac.uk/chembl	Tissues used to annotate cells and cell lines, cross-referenced to EFO, BTO, UBERON, and CALOHA	^CHEMBL\d+$	CHEMBL3559721	dmendez@ebi.ac.uk					False																														chembl		
chemdb	ChemDB	http://cdb.ics.uci.edu/	ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.	^\d+$	3966782	pfbaldi@uci.edu	http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1				False				CHEMDB										chemdb	chemdb						chemdb											
chemfont.chemical	ChemFOnt Chemical	https://www.chemfont.ca/chemicals	The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to individual chemicals.	^CFc\d{9}$	CFc000239295	david.wishart@ualberta.ca	https://www.chemfont.ca/chemicals/$1				False																																
chemfont.ontology	ChemFOnt Ontology	https://www.chemfont.ca/ontology_browse	The Chemical Functional Ontology (ChemFOnt) is a hierarchical, OWL-compatible ontology describing the functions and actions of biologically important chemicals including primary metabolites, secondary metabolites, natural products, food chemicals, synthetic food additives, drugs, herbicides, pesticides and environmental chemicals. The identifiers in this semantic space correspond to entries in the ChemFOnt ontology that are used to organize individual chemicals. Terms can be looked up using the following URL (https://www.chemfont.ca/ontology_browse/term_info/18), but not directly by ID	^CFo\d{9}$	CFo000000197	david.wishart@ualberta.ca		https://www.chemfont.ca/system/downloads/1.0/chemfont.owl.zip			False																																
chemicalbook	Chemical Book	https://www.chemicalbook.com	A hybrid chemical enyclopedia and supplier advertizing system for chemicals.		CB82546919		https://www.chemicalbook.com/ChemicalProductProperty_IN_$1.htm			ChemicalBookNo	False																																
chemidplus	ChemIDplus	https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp	ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.	^\d+\-\d+\-\d+$	57-27-2		https://chem.nlm.nih.gov/chemidplus/rn/$1			ChemIDplus	False				CHEMIDPLUS						2658		nbdc01837		chemidplus	chemidplus						chemidplus											
cheminf	Chemical Information Ontology	https://github.com/semanticchemistry/semanticchemistry	The chemical information ontology (cheminf) describes information entities about chemical entities. It provides qualitative and quantitative attributes to richly describe chemicals.	^\d{6}$	000410	egon.willighagen@gmail.com	http://purl.obolibrary.org/obo/CHEMINF_$1	https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl			False	CHEMINF		20702	CHEMINF	CHEMINF									cheminf		cheminf	cheminf	CHEMINF						cheminf				Q55118298				
chempro.competitor	ChemPro Competitor	https://chemprosquare.idrblab.net	ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for compounds that compete with probes for binding to target proteins.	^LDCM\d+$	LDCM0160	zhufeng@zju.edu.cn	https://chemprosquare.idrblab.net/data/competitor/details/$1				False																																
chempro.probe	ChemPro Probe	https://chemprosquare.idrblab.net	ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for chemoproteomic probes used to label human proteins in living cells.	^LDPC\d+$	LDPC0032	zhufeng@zju.edu.cn	https://chemprosquare.idrblab.net/data/probe/details/$1				False																																
chempro.target	ChemPro Target	https://chemprosquare.idrblab.net	ChemPro is a database of chemoproteomic probes. This prefix provides identifiers for human proteins that interact with chemoproteomic probes.	^LDTP\d+$	LDTP03903	zhufeng@zju.edu.cn	https://chemprosquare.idrblab.net/data/target/details/$1				False																																
chemrof	Chemical Entity Materials and Reactions Ontological Framework	https://chemkg.github.io/chemrof/	A data model for managing information about chemical entities, ranging from atoms through molecules to complex mixtures.		FullySpecifiedAtom	cjmungall@lbl.gov	https://chemkg.github.io/chemrof/$1	https://raw.githubusercontent.com/chemkg/chemrof/main/schema/owl/chemrof.owl.ttl			False	CHEMROF				CHEMROF																			chemrof								
chemspider	ChemSpider	http://www.chemspider.com/	ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.	^\d+$	56586	pencehe@oneonta.edu	http://www.chemspider.com/Chemical-Structure.$1.html			ChemSpiderID|Chemspider	False				CHEMSPIDER			000405			1173		nbdc01863		chemspider	chemspider						chemspider	r3d100010205					P661					
chickenqtldb	Animal Genome Chicken QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.	^\d+$	14362		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False				CHICKENQTLDB										chickenqtldb	chickenqtldb						chickenqtldb									qtldb		
chictr	Chinese Clinical Trial Registry	https://www.chictr.org.cn	Established in 2005 by professor Wu Taixiang and Li Youping team, West China Hospital, Sichuan University, and the Ministry of Health of China assigned it to be the representative of China to join WHO ICTRP in 2007. The Chinese Clinical Trial Registry provides the services include register for trials, consultation for trial design, central randomization for an allocation sequence, peer review for draft articles and training for peer reviewers. (from website)	^ChiCTR(-[A-Z]+-)?\d+$	ChiCTR2300070727						False																																
chiro	ChEBI Integrated Role Ontology	https://github.com/obophenotype/chiro	CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.			vasilevs@ohsu.edu	http://purl.obolibrary.org/obo/chiro#$1				False	CHIRO				CHIRO											chiro	chiro	CHIRO						chiro				Q113006226				
chmo	Chemical Methods Ontology	https://github.com/rsc-ontologies/rsc-cmo	CHMO, the chemical methods ontology, describes methods used to	^\d{7}$	0002902	batchelorc@rsc.org	http://purl.obolibrary.org/obo/CHMO_$1		http://purl.obolibrary.org/obo/chmo.obo		False	CHMO		20703	CHMO	CHMO											chmo	chmo	CHMO						chmo				Q55118301				
chr	Chromosome Ontology	https://github.com/monarch-initiative/monochrom	The Chromosome Ontology is an automatically derived ontology of chromosomes and chromosome parts.		10090-chr10qC	cjmungall@lbl.gov		https://raw.githubusercontent.com/monarch-initiative/monochrom/refs/heads/master/chr.owl	https://raw.githubusercontent.com/monarch-initiative/monochrom/refs/heads/master/chr.obo		False	CHR			CHR	CHR																											
cido	Coronavirus Infectious Disease Ontology	https://github.com/cido-ontology/cido	The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.	^\d{7}$	0000005	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/CIDO_$1	https://github.com/CIDO-ontology/cido/raw/master/cido.owl			False	CIDO				CIDO											cido	cido	CIDO										Q110998476				
cidoc.crm	CIDOC Conceptual Reference Model	https://cidoc-crm.org	The CIDOC Conceptual Reference Model (CRM) is a theoretical and practical tool for information integration in the field of cultural heritage. It can help researchers, administrators and the public explore complex questions with regards to our past across diverse and dispersed datasets. The CIDOC CRM achieves this by providing definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation and of general interest for the querying and exploration of such data. Such models are also known as formal ontologies. These formal descriptions allow the integration of data from multiple sources in a software and schema agnostic fashion. [from homepage]		E1	patrick.le-boeuf@bnf.fr	http://www.cidoc-crm.org/cidoc-crm/$1				False	CIDOC-CRM				CIDOC-CRM																			cidoc					crm			
cienciavitae	CIÊNCIAVITAE ID	https://www.ciencia-id.pt	identifier of scientific author in www.cienciavitae.pt	^([0-9A-F]{4}-){2}[0-9A-F]{4}$	0C1F-DA6C-4B02		https://www.cienciavitae.pt/$1				False																											P7893					
cio	Confidence Information Ontology	https://github.com/BgeeDB/confidence-information-ontology	An ontology to capture confidence information about annotations.	^\d{7}$	0000040	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/CIO_$1				False	CIO			CIO	CIO											cio	cio	CIO										Q81661853				
citedcat	DataCite to DCAT-AP Mapping	https://ec-jrc.github.io/datacite-to-dcat-ap/	A vocabuarly for describing the background and methodology for the design of the DataCite profile of DCAT-AP (CiteDCAT-AP), as well as the defined mappings.		isSupplementedBy	andrea.perego@jrc.ec.europa.eu	https://w3id.org/citedcat-ap/$1				False													citedcat																			
citexplore	CiteXplore	https://www.ebi.ac.uk/citexplore/	One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes.		C6155	maria.taboada@usc.es	https://europepmc.org/article/CTX/$1			CTX	False																					citexplore											
cito	Citation Typing Ontology	http://www.sparontologies.net/ontologies/cito	An ontology that enables characterization of the nature or type of citations, both factually and rhetorically.		sharesAuthorInstitutionWith	silvio.peroni@unibo.it	http://purl.org/spar/cito/$1	https://github.com/SPAROntologies/cito/raw/refs/heads/master/docs/current/cito.owl			False													cito											cito								
civic.aid	CIViC Assertion	https://civicdb.org/	A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC.	^[0-9]+$	3	mgriffit@wustl.edu	https://civicdb.org/links/assertions/$1			civic.assertion	False														civic.aid																		
civic.did	CIViC Disease	https://civicdb.org/	Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement.	^[0-9]+$	46	mgriffit@wustl.edu	https://civicdb.org/links/diseases/$1			civic.disease	False														civic.did																		
civic.eid	CIViC Evidence	https://civicdb.org/	Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).	^[0-9]+$	1199	mgriffit@wustl.edu	https://civicdb.org/links/evidence/$1			civic.evidence	False														civic.eid																		
civic.gid	CIViC gene	https://civicdb.org/	A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis	^[0-9]+$	272	mgriffit@wustl.edu	https://civicdb.org/links/gene/$1	https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.owl	https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.obo	civic.gene	False														civic.gid													P11277					
civic.mpid	CIViC Molecular Profile	https://civicdb.org/	CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC.	^[0-9]+$	559	mgriffit@wustl.edu	https://civicdb.org/links/molecular_profile/$1			civic.molecularprofile	False														civic.mpid																		
civic.sid	CIViC Source	https://civicdb.org/	In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source.	^[0-9]+$	62	mgriffit@wustl.edu	https://civicdb.org/links/sources/$1			civic.source	False														civic.sid																		
civic.tid	CIViC Therapy	https://civicdb.org/	Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant.	^[0-9]+$	14	mgriffit@wustl.edu	https://civicdb.org/links/drugs/$1			civic.therapy	False														civic.tid																		
civic.vgid	CIViC Variant Group	https://civicdb.org/	Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance	^[0-9]+$	16	mgriffit@wustl.edu	https://civicdb.org/links/variant_group/$1			civic.variantgroup	False														civic.vgid																		
civic.vid	CIViC variant	https://civicdb.org/	CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making.	^[0-9]+$	12	mgriffit@wustl.edu	https://civicdb.org/links/variant/$1			civic.variant	False														civic.vid													P3329					
cl	Cell Ontology	https://obophenotype.github.io/cell-ontology/	The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.	^\d{7}$	0000062	do12@sanger.ac.uk	http://purl.obolibrary.org/obo/CL_$1		https://github.com/obophenotype/cell-ontology/raw/master/cl.obo		False	CL	CL		CL	CL	CL								cl	cl	cl	cl	CL			cl						P7963	Q55118285				
clao	Collembola Anatomy Ontology	https://github.com/luis-gonzalez-m/Collembola	CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).	^\d{7}$	0000088	lagonzalezmo@unal.edu.co	http://purl.obolibrary.org/obo/CLAO_$1				False	CLAO				CLAO											clao	clao	CLAO										Q111274067				
clarin.clavas	CLAVAS: ISO 639-3 Language Codes	https://vocabularies.clarin.eu/clavas/ISO639-3/en/	Representation of languages		CDB-00133756-001		http://cdb.iso.org/lg/$1				False																																
clarin.concept	CLARIN Concept Registry	https://vocabularies.clarin.eu/clavas/ccr/en/	Concepts for encoding bibliometric information		CCR_C-3784_55fa12c9-35ad-7b55-b7a5-f9926c801952		http://hdl.handle.net/11459/$1				False																																
classyfire	ClassyFire	http://classyfire.wishartlab.com/	ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.	^\d{7}$	0004828		http://classyfire.wishartlab.com/tax_nodes/C$1		http://classyfire.wishartlab.com/system/downloads/1_0/chemont/ChemOnt_2_1.obo.zip	CHEMONTID|chemont	False														classyfire																		
clb	ChecklistBank	https://www.checklistbank.org	ChecklistBank is an index and repository for taxonomic and nomenclatural datasets	^[0-9]+(LR)?$	1010		https://www.checklistbank.org/dataset/$1				False														clb																		
cldb	Cell Line Database	http://bioinformatics.hsanmartino.it/hypercldb/indexes.html	The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories.	^(cl|tum)\d+$	cl3603		http://bioinformatics.hsanmartino.it/hypercldb/$1.html			hypercldb	False				CLDB		CLDB								cldb	cldb																	
clingen.affiliation	ClinGen Clinical Genome Expert Panel	https://clinicalgenome.org/affiliation	ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides identifiers for a panel of experts performing variant pathogenecity evaluation.		40135		https://clinicalgenome.org/affiliation/$1/				False																																
clingen.allele	ClinGen Allele Registry	https://reg.clinicalgenome.org	ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides and maintains identifiers for alleles.	^CA\d+$	CA981206459		https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1			CAID|clingene	False																																
clingen.curation	ClinGen Curation	https://search.clinicalgenome.org/kb/gene-validity	ClinGen is a National Institutes of Health (NIH)-funded resource that defines the clinical relevance of genes and variants for use in precision medicine and research. This prefix provides identifiers for curations representing evidence aggregation and expert panel assertions based on standardized evaluation procedures	^\d{6}$	004126		https://search.clinicalgenome.org/CCID:$1				False																																
clinicaltrials	ClinicalTrials.gov	https://clinicaltrials.gov/	ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries	^NCT\d{8}$	NCT00222573	register@clinicaltrials.gov	https://www.clinicaltrials.gov/study/$1	https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.owl.gz	https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.obo.gz	NCT|clinicaltrial|ctgov	False				CLINICALTRIALS										clinicaltrials	clinicaltrials						clinicaltrials						P3098					
clinvar.record	ClinVar Record	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.	^RCV\d+(\.\d+)?$	RCV000033555.3		http://www.ncbi.nlm.nih.gov/clinvar/$1				False				CLINVAR.RECORD										clinvar.record	clinvar.record																	
clinvar.submission	ClinVar Submission	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.	^SCV\d+(\.\d+)?$	SCV000151292		http://www.ncbi.nlm.nih.gov/clinvar?term=$1				False				CLINVAR.SUBMISSION										clinvar.submission	clinvar.submission																	
clinvar.submitter	ClinVar Submitter	https://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).	^\d+$	26957		https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1				False														clinvar.submitter																		
clinvar.variation	ClinVar Variation	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.	^\d+$	12345	maglott@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/clinvar/variation/$1			clinvar|clinvar.variant	False				ClinVarVariant		ClinVar					2.16.840.1.113883.6.319	nbdc01514		clinvar	clinvar							r3d100013331			Clinvar		P1929					
clm	Cell Markers Ontology	https://github.com/Cellular-Semantics/CellMark	This ontology integrates cell type markers for cells in the Cell Ontology from various sources along with details of marker context (anatomical context, assay), confidence (where available) and provenance. [from repository]	^\d{7}$	1000003	davidos@ebi.ac.uk	http://purl.obolibrary.org/obo/CLM_$1	https://github.com/Cellular-Semantics/CellMark/raw/refs/heads/main/clm.owl	https://github.com/Cellular-Semantics/CellMark/raw/refs/heads/main/clm.obo		False																																
clo	Cell Line Ontology	https://github.com/CLO-Ontology/CLO	The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns.	^\d{7}$	0000091	zhengj2007@gmail.com	http://purl.obolibrary.org/obo/CLO_$1			CLO	False	CLO			CLO	CLO	CLO								clo		clo	clo	CLO			clo						P2158	Q21039006				
cls	Cell Lines Service	https://www.cytion.com/	Cell line collections (Providers)		300108/p3934_A-172		https://www.cytion.com/$1				False						CLS																										
clyh	Clytia hemisphaerica Development and Anatomy Ontology	https://github.com/EBISPOT/clyh_ontology	Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica.	^\d+$	1000100	lucas.leclere@obs-banyuls.fr	http://purl.obolibrary.org/obo/CLYH_$1				False	CLYH				CLYH											clyh	clyh	CLYH										Q111274068				
cmecs	Costal and Marine Ecological Classification Standard	https://cmecscatalog.org/cmecs	Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard.	^\d+$	595	kate.rose@noaa.gov	https://cmecscatalog.org/cmecs/classification/unit/$1.html				False	CMECS				CMECS				CMECS																							
cmf	CranioMaxilloFacial ontology	https://code.google.com/p/craniomaxillofacial-ontology/	This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain			engelsta@ohsu.edu	http://purl.obolibrary.org/obo/CMF_$1				True	CMF			CMF												cmf		CMF										Q114677881				
cmo	Clinical measurement ontology	http://rgd.mcw.edu/rgdweb/ontology/search.html	Morphological and physiological measurement records generated from clinical and model organism research and health programs.	^\d{7}$	0001350	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/CMO_$1				False	CMO			CMO	CMO											cmo	cmo	CMO										Q81661570				
cmpo	Cellular Microscopy Phenotype Ontology	http://www.ebi.ac.uk/cmpo	CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.	^\d{7}$	0000435	jupp@ebi.ac.uk	http://www.ebi.ac.uk/cmpo/CMPO_$1				False	CMPO				CMPO												cmpo															
cncb.gwh	CNCB Genome Warehouse	https://ngdc.cncb.ac.cn/gwh/browse/genome	The China National Center for Bioinformation's (CNCB) Genome Warehouse (GWH) is a public repository holding genetic information for a wide range of species including humans, plants, animals, and microorganisms. Identifiers in this resource correspond to genomes of various species. The goal of the resource is to make genomic data accessible to researchers in areas like precision medicine and biotechnology.	^\d{6}$	167047	baoym@big.ac.cn	https://ngdc.cncb.ac.cn/gwh/Genome/$1/show				False																																
cnrs	French National Center for Scientific Research - Research Group Identifier	https://annuaire.cnrs.fr	identifier for an academic research group issued by the CNRS	^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY|UPS)\d+$	UMR7315		https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u				False																											P4550					
cnt	Representing Content in RDF	https://www.w3.org/TR/Pointers-in-RDF/#ref-content	This vocabulary is intended to provide a flexible framework within different usage scenarios to semantically represent any type of content, be it on the Web or in local storage media. For example, it can be used by web quality assurance tools such as web accessibility evaluation tools to record a representation of the assessed web content, including text, images, or other types of formats. In many cases, it can be used together with HTTP Vocabulary in RDF 1.0, which allows quality assurance tools to record the HTTP headers that have been exchanged between a client and a server. This is particularly useful for quality assurance testing, conformance claims, and reporting languages like the W3C Evaluation And Report Language (EARL). [from homepage]		Content		http://www.w3.org/2011/content#$1				False			17875										cnt																cnt			
co_320	Rice ontology	https://cropontology.org/ontology/CO_320/Rice	Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables	^\d{7}$	0000618	j.detras@cgiar.org	https://cropontology.org/rdf/CO_320:$1				False		CO_320						CO_320									co_320															
co_321	Wheat ontology	https://cropontology.org/ontology/CO_321/Wheat	July 2018	^\d{7}$	0000449	r.shrestha2@cgiar.org	https://cropontology.org/rdf/CO_321:$1				False		CO_321						CO_321									co_321															
co_322	Maize ontology	https://cropontology.org/ontology/CO_322/Maize	Maize Trait Dictionary in template 5 - CIMMYT- September 2016	^\d{7}$	0000773	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_322:$1				False		CO_322						CO_322									co_322															
co_323	Barley ontology	https://cropontology.org/ontology/CO_323/Barley	ICARDA - TDv5 - Sept 2018	^\d{7}$	0000252	helpdesk@cropontology-curationtool.org	https://cropontology.org/rdf/CO_323:$1				False		CO_323						CO_323									co_323															
co_324	Sorghum ontology	https://cropontology.org/ontology/CO_324/Sorghum	Sorghum TDv5 - Oct 2019	^\d{7}$	0000111	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_324:$1				False		CO_324						CO_324									co_324															
co_325	Banana ontology	https://cropontology.org/ontology/CO_325/Banana	Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019	^\d{7}$	0000519	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_325:$1				False		CO_325						CO_325									co_325															
co_326	Coconut ontology	https://cropontology.org/ontology/CO_326/Coconut	Draft version	^\d{7}$	0000254	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_326:$1				False		CO_326						CO_326									co_326															
co_327	Pearl millet ontology	http://www.cropontology.org/ontology/CO_327/Pearl%20millet	Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016	^\d{7}$	0000095	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_327:$1				False		CO_327						CO_327									co_327															
co_330	Potato ontology	https://cropontology.org/ontology/CO_330/Potato	CIP - potato ontology - december 2018	^\d{7}$	0000106	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_330:$1				False		CO_330						CO_330									co_330															
co_331	Sweet Potato ontology	http://www.cropontology.org/ontology/CO_331/Sweet%20Potato	Sweet Potato Trait Dictionary in template v5 - CIP - November 2019	^\d{7}$	0000088	helpdesk@cropontology-curationtool.org	https://cropontology.org/rdf/CO_331:$1				False		CO_331						CO_331									co_331															
co_333	Beet Ontology ontology	http://www.cropontology.org/ontology/CO_333/Beet%20Ontology	This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017.	^\d+$	3000045	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_333:$1				False		CO_333						CO_333									co_333															
co_334	Cassava ontology	https://cropontology.org/ontology/CO_334/Cassava	Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016	^\d{7}$	0000070	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_334:$1				False		CO_334						CO_334									co_334															
co_335	Common Bean ontology	http://www.cropontology.org/ontology/CO_335/Common%20Bean	CIAT Common bean trait dictionary - version August 2014	^\d{7}$	0000189	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_335:$1				False		CO_335						CO_335									co_335															
co_336	Soybean ontology	https://cropontology.org/ontology/CO_336/Soybean	Soybean Trait Dictionary in template v5 - IITA - July 2015	^\d{7}$	0000339	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_336:$1				False		CO_336						CO_336									co_336															
co_337	Groundnut ontology	https://cropontology.org/ontology/CO_337/Groundnut	Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015	^\d{7}$	0000054	tm.shah@cgiar.org	https://cropontology.org/rdf/CO_337:$1				False		CO_337						CO_337									co_337															
co_338	Chickpea ontology	https://cropontology.org/ontology/CO_338/Chickpea	Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015	^\d{7}$	0000138	tm.shah@cgiar.org	https://cropontology.org/rdf/CO_338:$1				False		CO_338						CO_338									co_338															
co_339	Lentil ontology	https://cropontology.org/ontology/CO_339/Lentil	Lentil Trait Dictionary in template v5 - ICARDA - July 2015	^\d{7}$	0000032	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_339:$1				False		CO_339						CO_339									co_339															
co_340	Cowpea ontology	https://cropontology.org/ontology/CO_340/Cowpea	Cowpea Trait Dictionary in template v5 - IITA - August 2015	^\d{7}$	0000639	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_340:$1				False		CO_340						CO_340									co_340															
co_341	Pigeonpea ontology	https://cropontology.org/ontology/CO_341/Pigeonpea	Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015	^\d{7}$	0000140	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_341:$1				False		CO_341						CO_341									co_341															
co_343	Yam ontology	https://cropontology.org/ontology/CO_343/Yam	version 2019 - pvs	^\d{7}$	0100010	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_343:$1				False		CO_343						CO_343									co_343															
co_345	Brachiaria ontology	https://cropontology.org/ontology/CO_345/Brachiaria	Brachiaria (forages) ontology TD v5 - Version Oct 2016	^\d{7}$	0000127	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_345:$1				False		CO_345						CO_345									co_345															
co_346	Mungbean ontology	https://cropontology.org/ontology/CO_346/Mungbean	oct 2016	^\d{7}$	0000199	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_346:$1				False		CO_346						CO_346									co_346															
co_347	Castor bean ontology	http://www.cropontology.org/ontology/CO_347/Castor%20bean	March 2017 version 	^\d{7}$	0000108	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_347:$1				False		CO_347						CO_347									co_347															
co_348	Brassica ontology	https://cropontology.org/ontology/CO_348/Brassica	Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France).	^\d+$	1100107	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_348:$1				False		CO_348						CO_348									co_348															
co_350	Oat ontology	https://cropontology.org/ontology/CO_350/Oat	Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo	^\d{7}$	0000215	helpdesk@cropontology-curationtool.org	https://cropontology.org/rdf/CO_350:$1				False		CO_350						CO_350									co_350															
co_356	Vitis ontology	https://cropontology.org/ontology/CO_356/Vitis	Grape Ontology including OIV and bioversity descriptors. INRA July 2017	^\d+$	4000027	helpdesk@cropontology-curationtool.org	https://cropontology.org/rdf/CO_356:$1				False		CO_356						CO_356									co_356															
co_357	Woody Plant Ontology ontology	http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology	This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.	^\d+$	1000290	celia.michotey@inrae.fr	https://cropontology.org/rdf/CO_357:$1				False		CO_357						CO_357									co_357															
co_358	Cotton ontology	https://cropontology.org/ontology/CO_358/Cotton	Cotton ontology from CottonGen database - June 2019	^\d{7}$	0000139	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_358:$1				False		CO_358						CO_358									co_358															
co_359	Sunflower ontology	https://cropontology.org/ontology/CO_359/Sunflower	December 2019	^\d{7}$	0000947	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_359:$1				False		CO_359						CO_359									co_359															
co_360	Sugar Kelp trait ontology	http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait	Sugar Kelp trait ontology	^\d{7}$	0000071	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_360:$1				False		CO_360						CO_360									co_360															
co_365	Fababean ontology	https://cropontology.org/ontology/CO_365/Fababean	developed by ICARDA - Dec 2018	^\d{7}$	0000205	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_365:$1				False		CO_365						CO_365									co_365															
co_366	Bambara groundnut ontology	http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut	version Dec 2019	^\d{7}$	0000072	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_366:$1				False		CO_366						CO_366									co_366															
co_367	Quinoa Ontology	http://cropontology.org/term/CO_367:ROOT	Quinoa Ontology database of the Crop Ontology (CO_367) of the Generation Challenge Program (GCP) describe traits variables of Quinoa Germinate Database http://germinate.quinoadb.org. Quinoa Phenotyping Consortium Creation Date 23.05.2021	^\d{7}$	0000004	e.arnaud@cgiar.org	https://cropontology.org/rdf/CO_367:$1				False		CO_367						CO_367																								
co_370	Apple Ontology	http://cropontology.org/term/CO_370:ROOT	Apple (Malus domestica) defines crop traits and variables to support the standardisation of apple breeding databases providing description of agronomic, morphological, physiological, quality traits, its methods and scales. This project has received funding from the European Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 894215.	^\d{7}$	0000890	ekaterina.chuprikova@eurac.edu	https://cropontology.org/rdf/CO_370:$1				False		CO_370						CO_370																								
cob	Core Ontology for Biology and Biomedicine	https://obofoundry.org/COB/	COB brings together key terms from a wide range of OBO projects to improve interoperability.	^\d{7}$	0000080	bpeters@lji.org	http://purl.obolibrary.org/obo/COB_$1				False	COB				COB											cob	cob	COB						cob				Q113006456				
coconut	COlleCtion of Open Natural ProdUcTs	https://coconut.naturalproducts.net	"COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a ""flat"" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."	^CNP\d{7}(\.\d+)?$	CNP0171505		https://coconut.naturalproducts.net/compound/coconut_id/$1				False																						r3d100014517										
codata.rdmt	CODATA Research Data Management Terminology	https://vocabs.ardc.edu.au/viewById/685	"The goal of the CODATA Research Data Management Terminology is to gather the key terms needed for a common understanding of the research data management domain.  The RDMT was revised by the CODATA RDM Terminology Working Group, shared for public review, and then confirmed and finalised in 2023.

The RDMT grew out of the CASRAI Research Data Management Glossary, which was intended as a practical reference for individuals and groups concerned with the improvement of research data management (RDM).  In 2020, CASRAI requested that CODATA assume responsibility for the curation of this valued resource. 

To that end, the RDM Terminology Working Group uses a lightweight and pragmatic biennial process to review the resource now restructured as the CODATA RDM Terminology and suggest any edits, additions and removals that are required in order to develop and improve this important reference resource."		aggregated-data	laura@codata.org	https://terms.codata.org/rdmt/$1				False									CODATA-RDMT																							
codelink	GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray	https://www.ebi.ac.uk/arrayexpress/files/A-GEHB-1/A-GEHB-1.adf.txt	GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release).	^GE\d+$	GE86325						False																																
coexistence	COEXISTENCE	https://mamoura.eci.ufmg.br	COEXISTENCE - Thesaurus of intersectionality and decolonial issues: black studies, gender, sexuality and feminist studies	^\d+$	163		https://mamoura.eci.ufmg.br/tematres/vocab/index.php?tema=$1				False																																
cog.category	COG Categories	https://www.ncbi.nlm.nih.gov/research/cog/	Higher-level classifications of COG Pathways		K	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1				False																																
cog.cluster	Cluster of orthologous genes	https://www.ncbi.nlm.nih.gov/research/cog/	COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems.	^COG\d+$	COG0001	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/cog/$1			COG_Cluster|cog	False														cog							cog				Cog							
cog.pathway	COG Pathways	https://www.ncbi.nlm.nih.gov/research/cog/pathways	Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera.		NAD%20biosynthesis	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1				False																																
cohd	MIMIC III Database	https://github.com/MIT-LCP/mimic-omop	MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012								False																																
cohesindb.binding	CohesinDB - cohesin site	https://cohesindb.iqb.u-tokyo.ac.jp	Contains identifiers of cohesin binding sites in human cells from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information.	^CDBP00\d{6}$	CDBP00415501	rnakato@iqb.u-tokyo.ac.jp	https://cohesindb.iqb.u-tokyo.ac.jp/browsepeak/eachpeak/$1				False																																
cohesindb.gene	CohesinDB gene	https://cohesindb.iqb.u-tokyo.ac.jp	Contains identifiers for genes that are part of cohesin regulated CRMs (cis-regulatory modules) from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related CRM. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information.	^CDBG000\d{5}$	CDBG00009781	rnakato@iqb.u-tokyo.ac.jp	https://cohesindb.iqb.u-tokyo.ac.jp/browsegene/eachgene/$1				False																																
cohesindb.loops	CohesinDB - cohesin-related chromatin loop	https://cohesindb.iqb.u-tokyo.ac.jp	Contains identifiers of cohesin-related chromatin loops from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related chromatin loop. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information.	^CDBL00\d{6}$	CDBL00540805	rnakato@iqb.u-tokyo.ac.jp	https://cohesindb.iqb.u-tokyo.ac.jp/browseloop/eachloop/$1				False																																
coi	COI Catalogue	https://coicatalogue.uc.pt/index.php	COI Catalogue is a herbarium with c. 800.000 specimens, organised in separate collections due to the research priorities over the years.		63812	coi@bot.uc.pt	https://coicatalogue.uc.pt/index.php?t=specimen&COINumber=$1				False																																
col	Catalogue of Life	https://www.checklistbank.org	Identifier of a taxon or synonym in the Catalogue of Life	^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$	4QHKG		https://www.checklistbank.org/dataset/3LR/taxon/$1				False			1915											col														Q38840				
col.taiwan	Catalogue of Life in Taiwan	http://taibnet.sinica.edu.tw/home.php	Identifier (name code) for a taxon in the catalogue of life in taiwan	^[1-9]\d{5}$	431472		https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1				False																											P3088					
colao	Coleoptera Anatomy Ontology	https://github.com/insect-morphology/colao	The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research.	^\d{7}$	0000000	entiminae@gmail.com	http://purl.obolibrary.org/obo/COLAO_$1				False	COLAO				COLAO											colao	colao	COLAO										Q113009128				
collagenmutdb	Collagen Mutation Database	http://www.le.ac.uk/genetics/collagen/	This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes.		COL3A1		https://eds.gene.le.ac.uk/home.php?select_db=$1				False																					cmd										hgnc.symbol	
colonatlas	Colorectal Cancer Atlas	http://www.coloncanceratlas.org	Cell line databases/resources		ALA		http://www.coloncanceratlas.org/search_cell_line?cell_line=$1				False						ColonAtlas																										
combine.specifications	COMBINE specifications	https://co.mbine.org/standards/	The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.	^\w+(\-|\.|\w)*$	sed-ml.level-1.version-1		https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md				False				COMBINE.SPECIFICATIONS										combine.specifications	combine.specifications																	
come	The Bioinorganic Motif Database	https://www.flymine.org/come	COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif.		MOL000160		https://www.flymine.org/come/entry?gn=$1			COMe	False																					come											
commoncoreontology	Common Core Ontologies	http://www.ontologyrepository.com	"The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest.

CCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). Accordingly, CCO classes and relations are heavily constrained by the BFO framework, from which it inherits much of its basic semantic relationships."		DirectiveInformationContentEntity	mpjensen@buffalo.edu	http://www.ontologyrepository.com/CommonCoreOntologies/$1				False																								cco								
complexportal	Complex Portal	https://www.ebi.ac.uk/complexportal	A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.	^CPX-[0-9]+$	CPX-263	sbalu@ebi.ac.uk	https://www.ebi.ac.uk/complexportal/complex/$1	https://w3id.org/biopragmatics/resources/complexportal/complexportal.owl	https://w3id.org/biopragmatics/resources/complexportal/complexportal.obo	ComplexPortal	False				COMPLEXPORTAL										complexportal	complexportal							r3d100013295				DB-0228	P7718					
comptox	DSSTox substance	https://comptox.epa.gov/dashboard	The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.	^DTXSID\d+$	DTXSID2021028		https://comptox.epa.gov/dashboard/$1				False				COMPTOX										comptox	comptox												P3117					
compulyeast	Compluyeast-2D-DB	http://compluyeast2dpage.dacya.ucm.es/	Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	O08709		http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1				True				COMPULYEAST										compulyeast	compulyeast						compluyeast2dpage										uniprot	
condo	The COnCEPT upper-level Design Ontology	https://github.com/OntoRep/COnCEPT	The COnCEPT upper-level Design Ontology (COnDO).		AestheticFunction		http://www.w3id.org/Concept/Ontology/COnDO#$1				False																								condo								
conference	Conference Ontology	http://www.scholarlydata.org/ontology/doc/	The conference-ontology is a new self-contained ontology for modelleing knowledge about conferences. The conference-ontology adopts best ontology design practices (e.g., Ontology Design Patterns, ontology reuse and interlinking) and guarantees interoperability with SWC ontology and all other pertinent vocabularies. (from homepage)		isDocumentRelatedTo		https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1	https://w3id.org/scholarlydata/ontology/conference-ontology.owl			False																																
confident.event	ConfIDent Event	https://www.confident-conference.org/index.php/Category:Event	Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating.	^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$	37af84f2-bfd7-4653-b608-eaff44febba6	philip.stroemert@tib.eu	https://www.confident-conference.org/index.php/Event:$1				False																																
confident.series	ConfIDent Event Series	https://www.confident-conference.org/index.php/Category:Event_Series	Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating.		AAC	philip.stroemert@tib.eu	https://www.confident-conference.org/index.php/Event_Series:$1				False																																
conoserver	ConoServer	http://www.conoserver.org/	ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.	^\d+$	2639	d.craik@imb.uq.edu.au	http://www.conoserver.org/?page=card&table=protein&id=$1				False				CONOSERVER										conoserver	conoserver											DB-0156						
conso	Curation of Neurodegeneration Supporting Ontology	https://pharmacome.github.io/conso/	An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases.	^CONSO\d{5}$	CONSO00010	cthoyt@gmail.com	https://pharmacome.github.io/conso/$1				False																																
cora	Core Ontology for Robotics and Automation	https://github.com/srfiorini/IEEE1872-owl	This is the OWL implementation of CORA in IEEE 1872-2015. It only includes  the taxonomy of concepts and relations, with some few axioms reggarding disjointness, property characteristics and property ranges/domains. The OWL implementation is an underspecified version of the SUO-KIF implementation in IEEE 1872-2015. That is, the set of allowed models of the SUO-KIF implementation is a proper subset of the allowed models by the OWL implementation. Concept definitions in natural language and othe clarifications can be found in the  IEEE 1872-2015 standard.		-bare#CollectiveRoboticSystem		http://purl.org/ieee1872-owl/cora$1				False																								cora								
coral.como	Contextual Ontology-based Repository Analysis Library - Context and Measurement Ontology	https://github.com/jmchandonia/CORAL	The Context and Measurement Ontology (COMO) contains ontological terms to describe the context for various types of experimental data and measurements.  It is useful in its current state for several different environmental microbiology projects. This ontology is used in multiple CORAL (Contextual Ontology-based Repository Analysis Library) deployments.	^\d+$	0000001	JMChandonia@lbl.gov			https://raw.githubusercontent.com/jmchandonia/CORAL/refs/heads/main/example/pedometer/ontologies/context_measurement_ontology.obo		False																																
cordis.article	CORDIS Article	https://cordis.europa.eu/	The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).	^\d+$	436605		https://cordis.europa.eu/article/id/$1				False																																
cordis.project	CORDIS Project	https://cordis.europa.eu/	The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).	^\d+$	817732		https://cordis.europa.eu/project/id/$1				False																																
coriell	Coriell Institute for Medical Research	http://ccr.coriell.org/	The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.	^[A-Z]{2}\d+$	GM17027		http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1				False				Coriell		Coriell								coriell	coriell																	
corpusvitrearum	Corpus Vitrearum	https://corpusvitrearum.de	A digital photo archive		F3436	jonatan.steller@adwmainz.de	https://corpusvitrearum.de/id/$1				False																																
corrdb	CorrDB	https://www.animalgenome.org	A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.	^[0-9]+$	37232	zhu@iastate.edu	https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1				False														corrdb								r3d100011496										
corum	Comprehensive Resource of Mammalian protein complexes	https://mips.helmholtz-muenchen.de/corum	The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.	^\d+$	100	andreas.ruepp@helmholtz-muenchen.de	https://mips.helmholtz-muenchen.de/corum/?complex_id=$1				False				CORUM										corum	corum				322		corum					DB-0224						
cosmic.cell	COSMIC Cell Lines	https://cancer.sanger.ac.uk/cell_lines/	COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer	^\d+$	906801		https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1				False						Cosmic																										
cosmic.gene	COSMIC Gene	http://cancer.sanger.ac.uk/cosmic/	COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.	^[A-Z0-9][A-Z0-9-]*$	BRAF	jt6@sanger.ac.uk	http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1			cosmic	False				COSMIC						3264				cosmic	cosmic																hgnc.symbol	
covid19	COVID-19 Surveillance Ontology	https://covid19.sfb.uit.no	Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.	^\w+_COVID19_[-\w]+$	SFB_COVID19_MW286762	dylan.mcgagh@magd.ox.ac.uk	https://covid19.sfb.uit.no/api/records/$1				False	COVID19				COVID19									covid19																		
covoc	CoVoc Coronavirus Vocabulary	https://github.com/EBISPOT/covoc	The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.	^\d{7}$	0010034	zmp@ebi.ac.uk	http://purl.obolibrary.org/obo/COVOC_$1	https://github.com/EBISPOT/covoc/releases/download/current/covoc.owl	https://github.com/EBISPOT/covoc/releases/download/current/covoc.obo		False																	covoc															
coypu	CoyPu Ontology	https://gitlab.com/coypu-project/coy-ontology	Ontology to describe companies and their supply network, employees, products, production materials, industries, events and relations.		AbductionOrForcedDisappearance		https://schema.coypu.org/global#$1				False																								coy								
coypu.emdat	EM-DAT Disaster Classification Ontology	https://schema.coypu.org/em-dat/1.0	Crisis and hazard related taxonomy developed by CRED for disaster preparedness and humanitarian actions at national and international level.		Air		https://schema.coypu.org/em-dat#$1				False																								emdat								
coypu.gta	Global Trade Alerts Ontology	https://schema.coypu.org/gta/1.0	An ontology for modeling global trade alerts, mainly inspired by the Global Trade Alerts repository.		AffectedCommercialFlow		https://schema.coypu.org/gta#$1				False																								gta								
coypu.ta	Trade Agreement Ontology	https://schema.coypu.org/ta/1.0	An ontology for modeling trade agreements		CustomsUnion		https://schema.coypu.org/ta#$1				False																								ta								
coypu.tiva	OECD TIVA Ontology	https://gitlab.com/coypu-project/coy-ontology/	An ontology for modeling international trade flows.		hasExport		https://schema.coypu.org/vtf#$1				False																								tiva								
cp	Cellular Phenotypes										True																																
cpc	Cooperative Patent Classification	https://worldwide.espacenet.com/classification	The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.	^([A-H,Y]|[A-H, Y]\d{2}|[A-H, Y]\d{2}[A-Z]|[A-H, Y]\d{2}[A-Z]\d{1,3}|[A-H, Y]\d{2}[A-Z]\d{1,3}(\/)?\d{2,})$	A01M1/026		https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1				False				CPC										cpc	cpc																	
cpt	Current Procedural Terminology	https://www.aapc.com	Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]	^\d+$	00103	Intellectual.PropertyServices@ama-assn.org	https://www.aapc.com/codes/cpt-codes/$1	https://w3id.org/biopragmatics/resources/cpt/cpt.owl	https://w3id.org/biopragmatics/resources/cpt/cpt.obo	ama-cpt	False	CPT				CPT																											
cran	The Comprehensive R Archive Network	https://cran.r-project.org/	Repository of packages for the R programming language		ggplot2		https://cran.r-project.org/web/packages/$1				False																											P5565					
crates	Crates.io	https://crates.io	A repository of software packages written in Rust.		curies		https://crates.io/crates/$1				False																																
creativebiolabs.antibody	Creative Biolabs antibody	https://www.creativebiolabs.net	Creative Biolabs Antigen provides identifiers  for antibody-based entities such as recombinant, functional, engineered, and format-specific antibodies as well as antibody processing tools, which are essential for applications in diagnostics, therapeutics, and immunology.	^[a-zA-Z]+-[a-zA-Z0-9()]+(-[a-zA-Z0-9]*)?$	TAB-884						False																																
creativebiolabs.protein	Creative Biolabs protein	https://www.creativebiolabs.net	Creative Biolabs Protein provides identifiers for protein-related entities, including therapeutic proteins, proteolytic enzymes, antibody-like scaffold proteins, soluble T cell receptors, and tetramers.	^[a-zA-Z]+-[a-zA-Z0-9()]+(-[a-zA-Z0-9]*)?$	VS-0724-CJ1						False																																
credit	Contributor Roles Taxonomy	https://credit.niso.org/	CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output.	^(conceptualization|data-curation|formal-analysis|funding-acquisition|investigation|methodology|project-administration|resources|software|supervision|validation|visualization|writing-original-draft|writing-review-editing)$	software	liz.allen@f1000.com	https://credit.niso.org/contributor-roles/$1	https://w3id.org/biopragmatics/resources/credit/credit.owl	https://w3id.org/biopragmatics/resources/credit/credit.obo		False																	credit							credit								
crisprdb	CRISPRdb	http://crispr.i2bc.paris-saclay.fr/	"Repeated CRISPR (""clustered regularly interspaced short palindromic repeats"") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."	^[0-9]+$	551115	Christine.Pourcel@u-psud.fr	http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1				False				CRISPRDB								nbdc02213		crisprdb	crisprdb																	
cro	Contributor Role Ontology	https://github.com/data2health/contributor-role-ontology	A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.	^\d{7}$	0000038	whimar@ohsu.edu	http://purl.obolibrary.org/obo/CRO_$1		https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo		False	CRO			CRO	CRO											cro	cro	CRO										Q70987840				
croissant	Croissant Format Specification	http://mlcommons.org/croissant/	A data model describing machine learning experiments		FileObject		http://mlcommons.org/croissant/$1				False																																
crop2ml	CropMRepository	http://www.crop2ml.org	CropMRespository is a database of soil and crop biophysical process models.	^[0-9]{9}$	000000001		http://www.crop2ml.org/cropmdb/$1				False														crop2ml																		
cryoem	Cryo Electron Microscopy ontology	http://scipion.i2pc.es/ontology/cryoem	Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles	^\d{7}$	0000052	isanchez@cnb.csic.es	http://scipion.i2pc.es/ontology/CRYOEM_$1				False	CRYOEM				CRYOEM												cryoem															
cryptodb	CryptoDB	https://cryptodb.org/cryptodb/	CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	cgd7_230	jkissing@uga.edu	https://cryptodb.org/cryptodb/app/record/gene/$1				False				CRYPTODB								nbdc01780		cryptodb	cryptodb						cryptodb	r3d100012265										
csa	Catalytic Site Atlas	https://www.ebi.ac.uk/thornton-srv/databases/CSA/	The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.	^[0-9][A-Za-z0-9]{3}$	1a05	nickf@ebi.ac.uk	https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1				True				CSA										csa	csa						csa											
csd	Cambridge Structural Database	https://www.ccdc.cam.ac.uk/	The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode.	^[A-Z]{6}(\d{2})?$	PELNAW	groom@ccdc.cam.ac.uk	https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG				False														csd								r3d100010197										
csp	Computer Retrieval of Information on Science Projects Thesaurus	https://web.archive.org/web/20091223034048/http://crisp.cit.nih.gov/Thesaurus/index.htm	CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains. Note that while still available and included in Unified Medical Language System (UMLS), it has not been updated since 2006.		2004-2820	af8d@nih.gov	http://purl.bioontology.org/ontology/CSP/$1			CRISP|CRISP Thesaurus|CRISP Thesaurus, 2006|CSP2005	True	CRISP				CRISP						2.16.840.1.113883.6.120								192													
cst.antibody	Cell Signaling Technology Antibody	http://www.cellsignal.com/catalog/index.html	Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.	^\d+$	3305		http://www.cellsignal.com/products/$1.html			cst.ab	False				CST.AB										cst.ab	cst.ab						cst											
cst.pathway	Cell Signaling Technology Pathways	http://www.cellsignal.com/pathways/index.html	Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.	^[A-Za-z0-9_-]+$	Akt_PKB		http://www.cellsignal.com/reference/pathway/$1.html			cst	False				CST										cst	cst				193													
cstr	Common Science and Technology Resources	https://www.cstr.cn/en/	CSTR is an identifier for Common Science and Technology Resources, to provide persistent identification services for the positioning, traceability, citation, statistics and evaluation of science and technology resources. 	^\w{5}\.\d{2}\..*$	31253.11.sciencedb.j00001.00123		https://cstr.cn/$1				False														cstr																		
csvw	CSV on the Web Vocabulary	http://www.w3.org/ns/csvw#	This document describes the RDFS vocabulary description used in the Metadata Vocabulary for Tabular Data along with the default JSON-LD Context.		uriTemplate						False													csvw																csvw			
ctcae	Common Terminology Criteria for Adverse Events	https://evs.nci.nih.gov/ftp1/CTCAE/About.html	The Common Terminology Criteria for Adverse Events (CTCAE),[1] formerly called the Common Toxicity Criteria (CTC or NCI-CTC), are a set of criteria for the standardized classification of adverse effects of drugs used in cancer therapy. The CTCAE system is a product of the US National Cancer Institute (NCI).	^E\d+$	E12768	yongqunh@med.umich.edu	http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae5.owl#$1			CTCAE	False	CTCAE				CTCAE																											
ctd.chemical	CTD Chemical	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^[CD]\d+$	D001151		http://ctdbase.org/detail.go?type=chem&acc=$1				False				CTD.CHEMICAL										ctd.chemical	ctd.chemical																mesh	
ctd.disease	CTD Disease	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^D\d+$	D053716		http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1				False				CTD.DISEASE										ctd.disease	ctd.disease																mesh	
ctd.gene	CTD Gene	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^\d+$	101	apdavis3@ncsu.edu	http://ctdbase.org/detail.go?type=gene&acc=$1				False				CTD.GENE										ctd.gene	ctd.gene											DB-0140					ncbigene	
cteno	Ctenophore Ontology	https://github.com/obophenotype/ctenophore-ontology	An anatomical and developmental ontology for ctenophores (Comb Jellies)	^\d{7}$	0000047	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/CTENO_$1		https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo		False	CTENO			CTENO	CTENO											cteno	cteno	CTENO										Q81661576				
ctis	Clinical Trials Information System	https://euclinicaltrials.eu/	This website supports the undertaking and oversight of clinical trials in the European Union (EU) and European Economic Area (EEA). It is part of a broad initiative to transform the EU/EEA clinical trials environment in support of large clinical trials in multiple European countries, to the benefit of medical innovation and patients. (from homepage)	^\d{4}-\d+-\d+-\d+$	2023-503698-40-00		https://euclinicaltrials.eu/app/#/view/$1				False																																
cto	Clinical Trials Ontology	https://github.com/ClinicalTrialOntology/CTO/	The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.	^\d{7}$	0000022	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/CTO_$1				False	CTO				CTO											cto	cto	CTO										Q113009139				
ctri	India Clinical Trials Registry	https://ctri.nic.in	"The mission of the Clinical Trials Registry-India (CTRI) is to ensure that all clinical trials conducted in India are prospectively registered, i.e. before the enrolment of the first participant. Additionally, post-marketing surveillance studies, BA/BE studies as well as clinical studies as part of PG thesis are also expected to be registered in the CTRI. (from homepage)

Note that the identifier in this semantic space is not the one used in the webpages"	^CTRI/\d{4}/\d{2,3}/\d+$	CTRI/2023/04/052053		https://trialsearch.who.int/Trial2.aspx?TrialID=$1				False																																
cubedb	Cube db	http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html	Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.	^[A-Za-z_0-9]+$	AKR		http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/				True				CUBEDB								nbdc02094		cubedb	cubedb																	
cutg	Codon Usage Tabulated from GenBank	http://www.kazusa.or.jp/codon/	Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database.  The compilation of codon usage is synchronized with each major release of GenBank.		9606		http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1				False																					cutg										ncbitaxon	
cvdo	Cardiovascular Disease Ontology	https://github.com/OpenLHS/CVDO	An ontology to describe entities related to cardiovascular diseases	^\d{7}$	0000546	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/CVDO_$1				False	CVDO			CVDO	CVDO											cvdo	cvdo	CVDO										Q55118269				
cvx	Vaccine administered code set	https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx	The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records.	^\d+$	54	iisinfo@cdc.gov	https://biopragmatics.github.io/providers/cvx/$1	https://w3id.org/biopragmatics/resources/cvx/cvx.owl	https://w3id.org/biopragmatics/resources/cvx/cvx.obo		False											2.16.840.1.113883.6.59																					
d1id	DataONE	https://www.dataone.org	DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences.	^\S+$	00030692-0FE1-4A1B-955E-A2E55D659267		https://cn.dataone.org/cn/v2/resolve/%7B$1%7D				False				D1ID										d1id	d1id																	
dai.thesauri	German Archaeological Institute Thesaurus	http://thesauri.dainst.org/en.html	A thesaurus of terms useful for digital archaeology		_fe65f286		http://thesauri.dainst.org/en/concepts/$1				False																																
dailymed	DailyMed	https://dailymed.nlm.nih.gov/dailymed/	DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.	^[A-Za-z0-9-]+$	973a9333-fec7-46dd-8eb5-25738f06ee54		https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1				False				DAILYMED										dailymed	dailymed						dailymed											
dalia.community	DALIA Community	https://search.dalia.education	A UUID for a community indexed in the Data Liteacy Alliance (DALIA) web application	^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$	bead62a8-c3c2-46d6-9eb1-ffeaba38d5bf		https://search.dalia.education/communities/$1				False																																
dalia.oer	DALIA Open Educational Resource	https://search.dalia.education	A UUID for an open educational resource indexed in the Data Liteacy Alliance (DALIA) web application	^[A-Za-z0-9]{8}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{4}-[A-Za-z0-9]{12}$	69aebdfe-73f6-4bac-85d7-047dd8cec076		https://search.dalia.education/items/$1				False																																
daml.pt	DAML Periodic Table of the Elements	https://www.daml.org/2003/01/periodictable/	A representation of the periodic table of the elements in OWL, with both elements and a hierarchical classification. This is from the DARPA Agent Markup Language (DAML) project, which has been inactive since the mid 2000's.		Be		http://www.daml.org/2003/01/periodictable/PeriodicTable#$1	https://www.daml.org/2003/01/periodictable/PeriodicTable.owl			False																																
dandi	Distributed Archives for Neurophysiology Data Integration	https://dandiarchive.org/	"DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).
DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.
These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."	^\d{6}(\/\d+\.\d+\.\d+)?$	000017	yoh@dartmouth.edu	https://dandiarchive.org/dandiset/$1				False														dandi								r3d100013638										
darc	Database of Aligned Ribosomal Complexes	http://darcsite.genzentrum.lmu.de/darc/index.php	DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors.	^\d+$	1250	daniel.wilson@uni-hamburg.de	http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1				True				DARC										darc	darc																	
dashr.expression	DASHR expression	https://dashr1.lisanwanglab.org/show-expression-table.php?start=0	DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.	^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$	hsa-mir-200a		https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable				False				DASHR.EXPRESSION										dashr.expression	dashr.expression																	
dashr.rna	Database of small human noncoding RNAs	http://lisanwanglab.org/DASHR/	DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.	^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$	hsa-mir-200a	dashr@lisanwanglab.org	http://lisanwanglab.org/DASHR/entry/$1			dashr	False				DASHR										dashr	dashr																	
datacite	DataCite Ontology	http://www.sparontologies.net/ontologies/datacite	An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF.		AgentIdentifierScheme	silvio.peroni@unibo.it	http://purl.org/spar/datacite/$1				False	DATACITE				DATACITE																											
datacommons	Data Commons	https://datacommons.org	A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces.		Gene		https://datacommons.org/browser/$1			dcid	False																																
datanator.gene	Datanator Gene	https://datanator.info/	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.	^K[0-9]+$	K00973		https://www.datanator.info/gene/$1				False														datanator.gene																		
datanator.metabolite	Datanator Metabolite	https://datanator.info/	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.	^[A-Z\-]+$	OUYCCCASQSFEME-MRVPVSSYSA-N		https://www.datanator.info/metabolite/$1				False														datanator.metabolite																		
datanator.reaction	Datanator Reaction	https://icahn.mssm.edu/	"	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."	^.*?--%3E.*?$	XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N		https://datanator.info/reaction/$1				False														datanator.reaction																		
datf	Database of Arabidopsis Transcription Factors	http://datf.cbi.pku.edu.cn/	DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.	^AT[1-5]G\d{5}(\.\d+)?$	AT1G01030.1		http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1				True				DATF										datf	datf				518		datf											
dbamp	Database of Anti-Microbial Peptides	https://awi.cuhk.edu.cn/dbAMP/	Identifiers represent antimicrobial peptides in the Database of Antimicrobial Peptides (dbAMP) which is an open-access, manually curated database of antimicrobial peptides (AMPs).	^\d{5}$	28463	leetzongyi@nycu.edu.tw	https://awi.cuhk.edu.cn/dbAMP/information.php?db=dbamp_$1				False												nbdc02467																				
dbd	Transcription Factor Database	http://www.transcriptionfactor.org/	The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.	^\d+$	0045310		http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD				False				DBD						2716				dbd	dbd				496		dbd											
dbest	EST database maintained at the NCBI.	https://www.ncbi.nlm.nih.gov/nucest	"The dbEST contains sequence data and other information on ""single-pass"" cDNA sequences, or ""Expressed Sequence Tags"", from a number of organisms."	^([A-Z]+)?\d+(\.\d+)?$	BP100000	tmjlowe@ucsc.edu	https://www.ncbi.nlm.nih.gov/nucest/$1				False				DBEST						1105		nbdc00413		dbest	dbest						dbest	r3d100010648										
dbg2introns	DBG2 Introns	http://webapps2.ucalgary.ca/~groupii/	The Database for Bacterial Group II Introns  provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank.	^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$	Cu.me.I1	zimmerly@ucalgary.ca	http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1				True				DBG2INTRONS										dbg2introns	dbg2introns						mgiid											
dbgap	Database of Genotypes and Phenotypes	https://www.ncbi.nlm.nih.gov/gap/	The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.	^phs[0-9]{6}(.v\d+.p\d+)?$	phs000768.v2.p1	feolo@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1				False				DBGAP		dbGAP						nbdc00414		dbgap	dbgap																	
dblp.author	DBLP author ID	https://dblp.org/	identifier for author entries in the DBLP computer science bibliography (use portion of DBLP person key after pid/)		199/2168		https://dblp.org/pid/$1				False																											P2456					
dbmhc	Database of human Major Histocompatibility Complex	https://www.ncbi.nlm.nih.gov/gv/mhc/	Cell line databases/resources	^\d+$	48439						True						dbMHC						nbdc01831																				
dbo	DBPedia Ontology	https://dbpedia.org/ontology	This ontology is generated from the manually created specifications in the dbpedia mappings wiki. each release of this ontology corresponds to a new release of the dbpedia data set which contains instance data extracted from the different language versions of wikipedia. for information regarding changes in this ontology, please refer to the dbpedia mappings wiki.		careerPrizeMoney		https://dbpedia.org/ontology/$1				False																													dbo			
dbpedia.property	DBPedia Property	http://dbpedia.org/property	Properties in DBPedia.		insertion		http://dbpedia.org/property/$1				False																																
dbpedia.resource	DBPedia Resource	https://dbpedia.org	A semi-automatically generated knowledgebase		Grenada		http://dbpedia.org/resource/$1			dbpedia|dbr	False																						r3d100011713										
dbprobe	NCBI Probe database Public registry of nucleic acid reagents	https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe	The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.	^\d+$	1000000		https://www.ncbi.nlm.nih.gov/probe/?term=$1				True				DBPROBE						2719				dbprobe	dbprobe						dbprobe											
dbsnp	dbSNP Reference SNP number	https://www.ncbi.nlm.nih.gov/snp/	The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.	^rs\d+$	rs121909098	pruitt@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/snp/$1				False				dbSNP		dbSNP				1106	2.16.840.1.113883.6.284	nbdc00206		dbsnp	dbsnp						dbsnp	r3d100010652			Dbsnp	DB-0013	P6861					
dbvar.study	Database of Genomic Structural Variation - Study	https://www.ncbi.nlm.nih.gov/dbvar	Studies in dbVar.		nstd102		https://www.ncbi.nlm.nih.gov/dbvar/studies/$1			dbvar.studies	False																																
dbvar.variant	Database of Genomic Structural Variation - Variant	https://www.ncbi.nlm.nih.gov/dbvar	Variants in dbVar.		nsv3875336		https://www.ncbi.nlm.nih.gov/dbvar/variants/$1			dbvar.variants	False																																
dc	Dublin Core Elements (1.1)	https://www.dublincore.org/specifications/dublin-core/dcmi-terms/	"Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.

**Deprecation Notice**: While the `/elements/1.1/` namespace will be supported indefinitely, DCMI gently encourages use of the `/terms/` namespace (i.e., `dcterms`) ([source](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#section-3))."		contributor	kdurante@stanford.edu	http://purl.org/dc/elements/1.1/$1			dc.elements|dc11|dce|dcelem|elements	True	dcelements			dc	DC								dce				dc												dc11			
dc_cl	Dendritic cell	http://www.dukeontologygroup.org/Projects.html		^\d{7}$	0000003	Lindsay.Cowell@utsouthwestern.edu	http://purl.obolibrary.org/obo/DC_CL_$1				True				DC_CL												dc_cl																
dcam	Dublin Core Metadata Initiative Abstract Model	https://www.dublincore.org/specifications/dublin-core/abstract-model/2007-06-04/	A metadata model for Dublin Core metadata		domainIncludes		http://purl.org/dc/dcam/$1				False													dcam																dcam			
dcat	Data Catalog	https://www.w3.org/ns/dcat	DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web		Dataset	kdurante@stanford.edu	http://www.w3.org/ns/dcat#$1				False	DCAT			dcat	DCAT								dcat				dcat							dcat3					dcat			
dcterms	Dublin Core Metadata Initiative Terms	https://www.dublincore.org/specifications/dublin-core/dcmi-terms/	This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		title	futo@stanford.edu	http://purl.org/dc/terms/$1			dc.terms|dct|terms	False	dcterms			dcterms	DCTERMS								dcterms				dcterms							dcterms					dcterms			
dctypes	Dublin Core Types	https://dublincore.org/specifications/dublin-core/dcmi-terms/	This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		Collection	kdurante@stanford.edu	http://purl.org/dc/dcmitype/$1			dcmitype|dcmitypes	False	DCMITYPE			dctypes	DCMITYPE																								dcmitype			
ddanat	Dictyostelium discoideum anatomy	http://dictybase.org/	A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum.	^\d{7}$	0000006	pfey@northwestern.edu	http://purl.obolibrary.org/obo/DDANAT_$1				False	DDANAT			DDANAT	DDANAT											ddanat	ddanat	DDANAT			ddanat							Q81661582				
ddc	Dewey Decimal Classification	http://www.oclc.org/dewey/	The Dewey Decimal Classification (DDC) system, devised by library pioneer Melvil Dewey in the 1870s and owned by OCLC since 1988, provides a dynamic structure for the organization of library collections. Now in its 23rd edition, and available in print and Web versions, the DDC is the world's most widely used library classification system.	^(([0-9][0-9]?|[0-9]{3}(-[0-9]{3})?|[0-9]{3}(-[0-9]{3}(:[0-9]+)?)?|[0-9]{3}\.[0-9]+(-[0-9]{3}\.[0-9]+(:[0-9]+)?)?|T[1-9][A-Z]?--[0-9]+(-T[1-9][A-Z]?--[0-9]+(:[0-9]+)?)?|[1-9][A-Z]?--[0-9]+(-[1-9][A-Z]?--[0-9]+(:[0-9]+)?)?)?)$	325.4						False			241																									Q48460				
ddi	Data Documentation Initiative Vocabulary	https://rdf-vocabulary.ddialliance.org/	A set of controlled vocabularies in the Data Documentation Initiative, each of which has its own code.		Instrument	soldatova.larisa@gmail.com	http://rdf-vocabulary.ddialliance.org/lifecycle#$1				False	DDI				DDI																											
ddi.aggregationmethod	Aggregation Method	https://vocabularies.cessda.eu/vocabulary/AggregationMethod	Identifies the type of aggregation used to combine related categories, usually within a common branch of a hierarchy, to provide information at a broader level than the level at which detailed observations are taken. (From: The OECD Glossary of Statistical Terms)		Sum		https://vocabularies.cessda.eu/vocabulary/AggregationMethod?lang=en#code_$1				False																																
ddi.analysisunit	Analysis Unit	https://vocabularies.cessda.eu/vocabulary/AnalysisUnit	Describes the entity being analyzed in the study or variable. This vocabulary can also be used to describe the unit of observation, which is the unit being observed, or from which data are collected. The unit of observation can be the same as, or different from the unit of analysis.		Individual		https://vocabularies.cessda.eu/vocabulary/AnalysisUnit?lang=en#code_$1				False																																
ddi.characterset	Character Set	https://vocabularies.cessda.eu/vocabulary/CharacterSet	Standard set of characters upon which many character encodings are based (Wikipedia).		ASCII		https://vocabularies.cessda.eu/vocabulary/CharacterSet?lang=en#code_$1				False																																
ddi.commonalitytype	Commonality Type	https://vocabularies.cessda.eu/vocabulary/CommonalityType	Describes the degree of similarity between two items or schemes (collections of items).		Identical		https://vocabularies.cessda.eu/vocabulary/CommonalityType?lang=en#code_$1				False																																
ddi.contributorrole	Contributor Role	https://vocabularies.cessda.eu/vocabulary/ContributorRole	A classification of contributor roles.		ProjectOrStudyDesign		https://vocabularies.cessda.eu/vocabulary/ContributorRole?lang=en#code_$1				False																																
ddi.datasourcetype	Data Source Type	https://vocabularies.cessda.eu/vocabulary/DataSourceType	Includes a typology of data sources.		RegistersRecordsAccounts		https://vocabularies.cessda.eu/vocabulary/DataSourceType?lang=en#code_$1				False																																
ddi.datatype	Data Type	https://vocabularies.cessda.eu/vocabulary/DataType	Identifies the type of data, which has a bearing on the acceptable data values, the operations that can be performed with the data, and the ways in which the data are stored.		String		https://vocabularies.cessda.eu/vocabulary/DataType?lang=en#code_$1				False																																
ddi.datetype	Date Type	https://vocabularies.cessda.eu/vocabulary/DateType	Specifies the type of date.		DateTime		https://vocabularies.cessda.eu/vocabulary/DateType?lang=en#code_$1				False																																
ddi.generaldataformat	General Data Format	https://vocabularies.cessda.eu/vocabulary/GeneralDataFormat	Describes the physical format(s) of the data documented in the logical product(s) of a study unit.		Numeric		https://vocabularies.cessda.eu/vocabulary/GeneralDataFormat?lang=en#code_$1				False																																
ddi.languageproficiency	Language Proficiency	https://vocabularies.cessda.eu/vocabulary/LanguageProficiency	Describes the level of proficiency of an individual in a natural language.		Native		https://vocabularies.cessda.eu/vocabulary/LanguageProficiency?lang=en#code_$1				False																																
ddi.lifecycleeventtype	Lifecycle Event Type	https://vocabularies.cessda.eu/vocabulary/LifecycleEventType	Specifies the event happening over the data life cycle that is considered significant enough to document.		StudyProposal		https://vocabularies.cessda.eu/vocabulary/LifecycleEventType?lang=en#code_$1				False																																
ddi.modeofcollection	Mode Of Collection	https://vocabularies.cessda.eu/vocabulary/ModeOfCollection	The procedure, technique, or mode of inquiry used to attain the data.		Interview		https://vocabularies.cessda.eu/vocabulary/ModeOfCollection?lang=en#code_$1				False																																
ddi.numerictype	Numeric Type	https://vocabularies.cessda.eu/vocabulary/NumericType	Specifies the type of numeric data.		Integer		https://vocabularies.cessda.eu/vocabulary/NumericType?lang=en#code_$1				False																																
ddi.responseunit	Response Unit	https://vocabularies.cessda.eu/vocabulary/ResponseUnit	Indicates the entity that provided the information carried by the variable.		Self		https://vocabularies.cessda.eu/vocabulary/ResponseUnit?lang=en#code_$1				False																																
ddi.samplingprocedure	Sampling Procedure	https://vocabularies.cessda.eu/vocabulary/SamplingProcedure	A typology of sampling methods.		TotalUniverseCompleteEnumeration		https://vocabularies.cessda.eu/vocabulary/SamplingProcedure?lang=en#code_$1				False																																
ddi.softwarepackage	Software Package	https://vocabularies.cessda.eu/vocabulary/SoftwarePackage	Indicates the statistical software package used in the production/processing/dissemination of the data. Data collection software is not covered in this list.		AcaStat		https://vocabularies.cessda.eu/vocabulary/SoftwarePackage?lang=en#code_$1				False																																
ddi.summarystatistictype	Summary Statistic Type	https://vocabularies.cessda.eu/vocabulary/SummaryStatisticType	Specifies the type of summary statistic. Summary statistics are a single number representation of the characteristics of a set of values.		ArithmeticMean		https://vocabularies.cessda.eu/vocabulary/SummaryStatisticType?lang=en#code_$1				False																																
ddi.timemethod	Time Method	https://vocabularies.cessda.eu/vocabulary/TimeMethod	Describes the time dimension of the data collection.		Longitudinal		https://vocabularies.cessda.eu/vocabulary/TimeMethod?lang=en#code_$1				False																																
ddi.timezone	Time Zone	https://vocabularies.cessda.eu/vocabulary/TimeZone	Time zone specification as an offset from UTC (Coordinated Universal Time) in terms of hours and minutes.		-12:00		https://vocabularies.cessda.eu/vocabulary/TimeZone?lang=en#code_$1				False																																
ddi.typeofaddress	Type of Address	https://vocabularies.cessda.eu/vocabulary/TypeOfAddress	Identifies the type of address entered as contact information for an individual or an organization.		Mailing		https://vocabularies.cessda.eu/vocabulary/TypeOfAddress?lang=en#code_$1				False																																
ddi.typeofconceptgroup	Type of Concept Group	https://vocabularies.cessda.eu/vocabulary/TypeOfConceptGroup	Specifies the rationale for creating a concept group.		Administrative		https://vocabularies.cessda.eu/vocabulary/TypeOfConceptGroup?lang=en#code_$1				False																																
ddi.typeoffrequency	Type of Frequency	https://vocabularies.cessda.eu/vocabulary/TypeOfFrequency	Indicates the frequency of data collection events.		Continuous		https://vocabularies.cessda.eu/vocabulary/TypeOfFrequency?lang=en#code_$1				False																																
ddi.typeofinstrument	Type of Instrument	https://vocabularies.cessda.eu/vocabulary/TypeOfInstrument	Includes a typology of data collection instruments.		Questionnaire		https://vocabularies.cessda.eu/vocabulary/TypeOfInstrument?lang=en#code_$1				False																																
ddi.typeofnote	Type of Note	https://vocabularies.cessda.eu/vocabulary/TypeOfNote	Includes a typology of notes.		Processing		https://vocabularies.cessda.eu/vocabulary/TypeOfNote?lang=en#code_$1				False																																
ddi.typeoftelephone	Type of Telephone	https://vocabularies.cessda.eu/vocabulary/TypeOfTelephone	Identifies the type of telephone entered as contact information for an individual or an organization.		Fixed		https://vocabularies.cessda.eu/vocabulary/TypeOfTelephone?lang=en#code_$1				False																																
ddi.typeoftranslationmethod	Type of Translation Method	https://vocabularies.cessda.eu/vocabulary/TypeOfTranslationMethod	A typology of methods used to translate data collection instruments, including questionnaires, individual questions, measurements, data capture flows, etc.		SingleTranslation		https://vocabularies.cessda.eu/vocabulary/TypeOfTranslationMethod?lang=en#code_$1				False																																
ddinter.drug	Curated Drug-Drug Interactions Database - Drug	http://ddinter.scbdd.com	Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.	^DDInter\d+$	DDInter20	oriental-cds@163.com	http://ddinter.scbdd.com/ddinter/drug-detail/$1				False																																
ddinter.interaction	Curated Drug-Drug Interactions Database - Interaction	http://ddinter.scbdd.com	Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.	^\d+$	1122888	oriental-cds@163.com	http://ddinter.scbdd.com/ddinter/interact/$1				False																																
ddpheno	Dictyostelium discoideum phenotype ontology	http://dictybase.org/	A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.	^\d{7}$	0001417	pfey@northwestern.edu	http://purl.obolibrary.org/obo/DDPHENO_$1		https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo		False	DDPHENO			DDPHENO	DDPHENO											ddpheno	ddpheno	DDPHENO										Q81661585				
debio	Decentralized Biomedical Ontology	https://biopragmatics.github.io/debio	A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.	^\d{7}$	0000001	cthoyt@gmail.com	https://biopragmatics.github.io/debio/$1	https://raw.githubusercontent.com/biopragmatics/debio/main/releases/current/debio.owl	https://raw.githubusercontent.com/biopragmatics/debio/main/releases/current/debio.obo	DeBiO	False																																
decipher	DECIPHER CNV Syndromes	https://www.deciphergenomics.org/	CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms	^\d+$	1	ganesh.swaminathan@sanger.ac.uk	https://www.deciphergenomics.org/syndrome/$1				False				DECIPHER																												
degradome	Degradome Database	http://degradome.uniovi.es/	The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.	^[AMCST][0-9x][0-9]$	Ax1		http://degradome.uniovi.es/cgi-bin/protease/$1				False				DEGRADOME										degradome	degradome																	
deims.activity	Dynamic Ecological Information Management System - Site and Dataset Registry - Activity	https://deims.org	Activities in DEIMS SDR	^[0-9a-f\-]+$	7dfd3f10-d410-45a4-983d-8fbd6dfbc374	christoph.wohner@umweltbundesamt.at	https://deims.org/activity/$1				False																																
deims.dataset	Dynamic Ecological Information Management System - Site and Dataset Registry - Dataset	https://deims.org	Datasets in DEIMS SDR	^[0-9a-f\-]+$	bb0754dd-7e69-4b29-b348-3f8017f73d6b	christoph.wohner@umweltbundesamt.at	https://deims.org/dataset/$1				False																																
deims.location	Dynamic Ecological Information Management System - Site and Dataset Registry - Locations	https://deims.org	Locations in DEIMS SDR	^[0-9a-f\-]+$	85dc6019-9654-4ba0-8338-08c4ffe8fe47	christoph.wohner@umweltbundesamt.at	https://deims.org/locations/$1				False																																
deims.network	Dynamic Ecological Information Management System - Site and Dataset Registry - Network	https://deims.org	Networks in DEIMS SDR	^[0-9a-f\-]+$	c3abdc60-49f1-49db-81fe-863b7dbb21d3	christoph.wohner@umweltbundesamt.at	https://deims.org/networks/$1				False																																
deims.sensor	Dynamic Ecological Information Management System - Site and Dataset Registry - Sensor	https://deims.org	Sensors in DEIMS SDR	^[0-9a-f\-]+$	2af339dd-a956-471f-9406-b0f74bacd579	christoph.wohner@umweltbundesamt.at	https://deims.org/sensors/$1				False																																
deims.site	Dynamic Ecological Information Management System - Site and dataset registry	https://deims.org/	DEIMS-SDR (Dynamic Ecological Information Management System - Site and dataset registry) is an information management system powered by eLTER. It allows you to discover long-term ecosystem research sites around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR describes a wide range of sites, providing a wealth of information, including each site’s location, ecosystems, facilities, parameters measured and research themes. It is also possible to access a growing number of datasets and data products associated with the sites.	^[0-9a-f\-]+$	0e39569d-ff81-4b78-9c34-b07309504d80	christoph.wohner@umweltbundesamt.at	https://deims.org/$1			deims.id	False																																
deims.taxonomy	Dynamic Ecological Information Management System - Site and Dataset Registry - Taxonomy	https://deims.org	Taxonomy in DEIMS SDR	^\d+$	21157	christoph.wohner@umweltbundesamt.at	https://deims.org/taxonomy/term/$1				False																																
deo	Discourse Elements Ontology	http://www.sparontologies.net/ontologies/deo	An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO.		Reference	silvio.peroni@unibo.it	http://purl.org/spar/deo/$1				False													deo																			
depmap	DepMap Cell Lines	https://depmap.org/portal	Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.	^ACH-\d+$	ACH-000001	vazquez@broadinstitute.org	https://depmap.org/portal/cell_line/$1	https://w3id.org/biopragmatics/resources/depmap/depmap.owl	https://w3id.org/biopragmatics/resources/depmap/depmap.obo		False						DepMap																										
depod	Human Dephosphorylation Database	http://www.depod.bioss.uni-freiburg.de	The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.	^[A-Z0-9]+$	PTPN1	depod@embl.de	http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1				False				DEPOD										depod	depod				584			r3d100011936				DB-0190					hgnc.symbol	
dermo	Human Dermatological Disease Ontology	https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0085-x	DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders	^\d{7}$	0000000	pns12@hermes.cam.ac.uk	http://purl.obolibrary.org/obo/DERMO_$1				False	DERMO				DERMO																											
destatis.subject	Destatis subject classification	https://github.com/VIVO-DE/destatis_faecherklassifikation	A vocabulary of university course subjects		01		https://onto.tib.eu/destf/cs/$1				False																								destf								
dev.ga4ghdos	Development Data Object Service	http://github.com/ga4gh/data-object-service-schemas	Assists in resolving data across cloud resources.	^[a-zA-Z0-9\-:#\.]+$	23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00		https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1				False				DEV.GA4GHDOS										dev.ga4ghdos	dev.ga4ghdos																	
devtox	DevTox	https://www.devtox.org/	The DevTox Project harmonizes the nomenclature used to describe developmental anomalies in laboratory animals, assists in the visual recognition of developmental anomalies with the aid of photographs, and provides a historical control database of developmental effects in laboratory animals.	^\d+$	311935300	rupert.kellner@item.fraunhofer.de	https://www.devtox.org/nomenclature/ml_manus.php?mno=$1				False																																
dfg.fo	DFG Classification of Subject Areas Ontology - 2020-2024	https://github.com/tibonto/DFG-Fachsystematik-Ontology	DFG Fachsystematik Ontology / DFG Classification of Subject Areas Ontology (DFGFO) encodes the DFG Classification of Subject Areas into an ontology, where each subject number are is enconded into a Class with subclass statements following the DFG Classification of Subject Areas hierarchy. Labels are provide German and English.		101-01		https://w3id.org/dfgfo/2020/$1				False																								dfgfo								
dg.4503	BioData Catalyst	https://gen3.biodatacatalyst.nhlbi.nih.gov	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	0000ffeb-36e0-4a29-b21d-84423bda979d		https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1				False														dg.4503																		
dg.4dfc	NCI Data Commons Framework Services	https://nci-crdc.datacommons.io/	DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	81944ba1-81d0-436e-8552-33d77a27834b		https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1				False														dg.4dfc																		
dg.6vts	JCOIN	https://jcoin.datacommons.io	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	2afacf00-9a1d-4d80-8c32-69d3923d3913		https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1				False														dg.6vts																		
dg.anv0	Anvil	https://gen3.theanvil.io	DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$	00077f1c-c45a-47ba-8e6c-1bf6b6b43fce		https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1				False														dg.anv0																		
dg.f82a1a	Kids First	https://kidsfirstdrc.org	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	00026f50-858a-446b-8ed9-b0e3ecd7b20e		https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1				False														dg.f82a1a																		
dg5b0d	BloodPAC	https://data.bloodpac.org/.	The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources.	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	00000d53-99bc-4d3e-8ed7-6dc358baccb7		https://data.bloodpac.org/ga4gh/drs/v1/objects/$1				False														dg.5b0d																		
dggr	Kyoto Stock Center	http://kyotofly.kit.jp/cgi-bin/stocks/data_search.cgi	Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]	^\d+$	918902		https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1				False																							DGGR									
dgrc	Drosophila Genomics Resource Center	https://dgrc.bio.indiana.edu/cells/Catalog	Cell line collections (Providers)	^\d+$	215		https://dgrc.bio.indiana.edu/product/View?product=$1				False						DGRC						nbdc00048																				
dhba	Developing Human Brain Atlas	https://www.brainspan.org/	A controlled vocabulary to support the study of transcription in the developing human brain	^\d+$	10153		https://purl.brain-bican.org/ontology/dhbao/DHBA_$1		https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dhba.obo		False																	dhba															
diabetesomic	DiabetesOmic	https://bio.liclab.net/diabetesOmicdb/	DiabetesOmic is a multi-omics database designed to collect and analyze transcriptional regulatory information across five high-throughput sequencing modalities, including ChIP-seq, RNA-seq, ATAC-seq, scATAC-seq, and scRNA-seq. This database's identifiers each represent a single sample. It contains clinical complication annotations including diabetic nephropathy, retinopathy, and atherosclerosis to enhance translational relevance. It enables the identification of disease-associated regulatory elements, epigenetic modifications, and cell type-specific molecular signatures, providing valuable insights into the molecular mechanisms of diabetes and its complications.	^sample_\d{3}$	sample_002	liujianghua@usc.edu.cn	https://bio.liclab.net/diabetesOmicdb/RNA-seq?sampleId=$1				False																																
dialnet.article	Dialnet article ID	https://dialnet.unirioja.es	identifier of an article in Dialnet		262393		https://dialnet.unirioja.es/servlet/articulo?codigo=$1				False																											P1610					
dialnet.author	Dialnet author ID	https://dialnet.unirioja.es	identifier of an author in Dialnet	^[1-9]\d*$	241889		https://dialnet.unirioja.es/servlet/autor?codigo=$1				False																											P1607					
dialnet.book	Dialnet book ID	https://dialnet.unirioja.es	identifier of a book in Dialnet		187021		https://dialnet.unirioja.es/servlet/libro?codigo=$1				False																											P1608					
dialnet.journal	Dialnet journal ID	http://dialnet.unirioja.es	identifier of a journal in Dialnet	^[1-9]\d{0,6}$	1119		https://dialnet.unirioja.es/servlet/revista?codigo=$1				False																											P1609					
dicom	DICOM Controlled Terminology	http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html	DICOM Controlled Terminology	^\d+$	109082	dclunie@dclunie.com	http://dicom.nema.org/resources/ontology/DCM/$1				False	DICOM				DICOM						1.2.840.10008.2.16.4						dicom															
dictybase	dictyBase	http://dictybase.org	A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics		DDB0191090	pfey@northwestern.edu	http://dictybase.org/gene/$1			dictyBase	False				dictyBase								nbdc00420									dictybase	r3d100010586				DB-0015						
dictybase.est	dictyBase Expressed Sequence Tag	http://dictybase.org/	The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.	^DDB\d+$	DDB0016567		http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1				False				DICTYBASE.EST										dictybase.est	dictybase.est																	
dictybase.gene	Dictybase Gene	http://dictybase.org/	The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information.	^DDB_G\d+$	DDB_G0267522	pfey@northwestern.edu	http://dictybase.org/gene/$1	https://w3id.org/biopragmatics/resources/dictybase.gene/dictybase.gene.owl	https://w3id.org/biopragmatics/resources/dictybase.gene/dictybase.gene.obo		False				DICTYBASE.GENE										dictybase.gene	dictybase.gene															dictybase		
did	Decentralized Identifier	https://w3c-ccg.github.io/did-spec/	DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary.	^[a-z0-9]+:[A-Za-z0-9.\-:]+$	sov:WRfXPg8dantKVubE3HX8pw		https://uniresolver.io/#did:$1				False														did	did																	
dideo	Drug-drug Interaction and Drug-drug Interaction Evidence Ontology	https://github.com/DIDEO/DIDEO	The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology	^\d{8}$	00000180	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/DIDEO_$1				False	DIDEO			DIDEO	DIDEO											dideo	dideo	DIDEO										Q81661586				
digitalconstruction.energy	Digital Construction Energy (dices)	https://digitalconstruction.github.io/v/0.5/index.html	An ontology for energy systems and energy efficiency in the construction and renovation domain		EnergyProperty		https://w3id.org/digitalconstruction/0.5/Energy#$1				False																								dices								
digitalconstruction.lifecycle	Digital Construction Lifecycle (dicl)	https://digitalconstruction.github.io/Lifecycle/v/0.5/	An ontology to represent the enhancement of building data throughout the construction lifecycle stages		BLCS_Framework		https://w3id.org/digitalconstruction/0.5/Lifecycle#$1				False																								dicl								
digitalconstruction.occupancy	Digital Construction Occupancy	https://digitalconstruction.github.io/Occupancy/v/0.5/	Digital Construction Occupancy ontology represents those aspects of construction and renovation projects that concern the comfort, safety and health of occupants, including visual and thermal comfort, indoor air quality and building acoustics, as well as related sensor observations.		AcousticComfort		https://w3id.org/digitalconstruction/0.5/Occupancy#$1				False																								dicob								
digitrubber	DigitRubber Ontology	https://tibhannover.github.io/DIGIT-RUBBER/	An ontology demonstrating rich ontology for rubber extrusion.		000040		https://www.tib.eu/digitrubber#DIGITRUBBER_$1	https://github.com/TIBHannover/DIGIT-RUBBER/raw/refs/heads/main/digitrubber.owl	https://github.com/TIBHannover/DIGIT-RUBBER/raw/refs/heads/main/digitrubber.obo		False																																
dinto	The Drug-Drug Interactions Ontology	http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto	A formal represention for drug-drug interactions knowledge.			maria.herrero@kcl.ac.uk	http://purl.obolibrary.org/obo/DINTO_$1				True	DINTO			DINTO	DINTO											dinto		DINTO														
dip	Database of Interacting Proteins	https://dip.doe-mbi.ucla.edu/	The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions	^DIP(\:)?\-\d{1,}[ENXS]$	DIP-743N	david@mbi.ucla.edu	https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1				False				DIP						2616		nbdc00049		dip	dip				3		dip	r3d100010670				DB-0016						
discoverx	DiscoverX cell line products	https://emea.discoverx.com/product_types/cell-lines-primary-cells	Cell line collections (Providers)		95-0166C6		https://emea.discoverx.com/catalog/$1				False						DiscoverX																										
disdriv	Disease Drivers Ontology	https://disease-ontology.org/	Drivers of human diseases including environmental, maternal and social exposures.	^\d+$	0000000	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/DISDRIV_$1				False	DISDRIV				DISDRIV											disdriv	disdriv	DISDRIV										Q113009148				
diseaseclass	Disease Class		Legacy disease classes that later became MONDO	^\d{7}$	0000598		https://biopragmatics.github.io/providers/diseaseclass/$1		https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo		True																																
diseasesdb	Diseases Database	http://www.diseasesdatabase.com/	The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities.	^\d+$	1784		https://www.diseasesdatabase.com/ddb$1.htm				False																											P557					
disprot	DisProt	https://disprot.org/	DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature.	^DP\d{5}$	DP00003	silvio.tosatto@unipd.it	https://disprot.org/$1				False				DISPROT						2723		nbdc01798		disprot	disprot						disprot	r3d100010561				DB-0017						
disprot.region	DisProt region	https://www.disprot.org	DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature.	^DP\d{5}r\d{3}$	DP00086r013		https://www.disprot.org/$1				False														disprot.region																disprot		
dlxb	Linear double stranded DNA sequences	https://doulix.com	DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences.	^[A-Z0-9]{6,7}$	6VDC956		https://doulix.com/biomodules/$1				False														dlxb																		
dlxc	Circular double stranded DNA sequences composed	https://doulix.com	DOULIX lab-tested standard biological parts, in this case, full length constructs.	^[A-Z0-9]{6,7}$	M77F7JM		https://doulix.com/constructs/$1				False														dlxc																		
dmba	Developing Mouse Brain Atlas	https://developingmouse.brain-map.org/	A controlled vocabulary to support the study of transcription in the developing mouse brain	^\d+$	15567	cellsemantics@gmail.com	https://purl.brain-bican.org/ontology/dmbao/DMBA_$1		https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dmba.obo		False																	dmba															
doap	Description of a Project	https://github.com/ewilderj/doap/wiki	DOAP is a project to create an XML/RDF vocabulary to describe software projects, and in particular open source projects.		Project	edd@usefulinc.com	http://usefulinc.com/ns/doap#$1				False													doap																doap			
docid	Digical Object Container Identifier	https://docid.africapidalliance.org/	Assigns persistent identifiers to multidisciplinary research outputs with focus on research originating in Africa, such as in cultural heritage and indigenous knowledge.		20.500.14351/5a7cdd09d9b65bc39697		https://docid.africapidalliance.org/docid/$1			DOCiD	False																																
dockerhub.repo	Docker Hub repository	https://hub.docker.com/	Docker repository hosted on Docker Hub		gitea/gitea		https://hub.docker.com/r/$1				False																											P8778					
dockerhub.user	DockerHub User	https://hub.docker.com/	A user in DockerHub		cthoyt		https://hub.docker.com/u/$1				False																																
doco	Document Components Ontology	http://www.sparontologies.net/ontologies/doco	An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix).		Paragraph	silvio.peroni@unibo.it	http://purl.org/spar/doco/$1				False													doco																			
dogont	Ontology Modeling for Intelligent Domotic Environments	http://iot-ontologies.github.io/dogont/	The DogOnt ontology supports device/network independent description of houses, including both controllable and architectural elements.		AccelerationStateValue		http://elite.polito.it/ontologies/dogont.owl#$1				False													dogont											dogont								
doi	Digital Object Identifier	https://www.doi.org/	The Digital Object Identifier System is for identifying content objects in the digital environment.	^10.\d{2,9}/.*$	10.1038/s41597-022-01807-3	jonathanmtclark@gmail.com	https://doi.org/$1				False			20716	DOI		DOI				1188				doi	doi						doi						P356	Q25670				
doid	Human Disease Ontology	https://disease-ontology.org	The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.	^\d+$	0110974	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/DOID_$1		https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo	do	False	DOID		576	DOID	DOID							nbdc00261		doid	doid	doid	doid	DOID			do				Doid		P699	Q5282129				
dolce	Descriptive Ontology for Linguistic and Cognitive Engineering	http://www.loa.istc.cnr.it/dolce/overview.html	DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL).  The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet.  As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use.								True																																
dome	DOME Registry	https://registry.dome-ml.org	The DOME registry is a curated set of papers related to machine learning methods in biology, each with its own unique DOME identifier.	^[a-z0-9]{10}$	dfyn1yvtz3	silvio.tosatto@unipd.it	https://registry.dome-ml.org/review/$1				False														dome																		
dommino	Database of Macromolecular Interactions	http://korkinlab.org/dommino	DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides.	^[0-9][A-Za-z0-9]{3}$	2GC4		http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1				True				DOMMINO										dommino	dommino				423													
door	Database for Prokaryotic Operons	http://csbl.bmb.uga.edu/DOOR/operon.php	DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes.	^\d+$	1398574		http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1				True				DOOR										door	door						door	r3d100014113										
doqcs.model	Database of Quantitative Cellular Signaling: Model	http://doqcs.ncbs.res.in/	The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models.	^\d+$	57	bhalla@ncbs.res.in	http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1				False				DOQCS.MODEL										doqcs.model	doqcs.model						doqcs.model											
doqcs.pathway	Database of Quantitative Cellular Signaling: Pathway	http://doqcs.ncbs.res.in/	The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways.	^\d+$	131	bhalla@ncbs.res.in	http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1				False				DOQCS.PATHWAY										doqcs.pathway	doqcs.pathway						doqcs.pathway											
dpbo	DataPLANT Biology Ontology	https://www.nfdi4plants.org/	With the DataPLANT biology ontology (DPBO), DataPLANT provides an intermediate ontology that acts as a broker and bridge between the individual researcher/domain experts and main ontology providers. DPBO enables easy and agile collection of missing vocabulary as well as relationships between terms for (meta)data annotation using DataPLANT’s Swate tool.	^\d+$	0010015	k.dumschott@fz-juelich.de	https://purl.org/nfdi4plants/ontology/dpbo/DPBO_$1		https://raw.githubusercontent.com/nfdi4plants/nfdi4plants_ontology/refs/heads/main/dpbo.obo		False																								dpbo								
dpo	Drosophila Phenotype Ontology	http://purl.obolibrary.org/obo/fbcv	An ontology of commonly encountered and/or high level Drosophila phenotypes.			cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBcv_$1				False	DPO				DPO											dpo	dpo	DPO												fbcv		
dpv	Description of Plant Viruses	http://www.dpvweb.net/	Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.	^\d+$	100	mike.adams@bbsrc.ac.uk	https://www.dpvweb.net/dpv/showdpv/?dpvno=$1				False				DPV								nbdc02410	dpv	dpv	dpv						dpvweb											
dpvocab	Data Privacy Vocabulary	https://w3c.github.io/dpv/2.0/dpv	The Data Privacy Vocabulary provides an ontology (classes and properties) and taxonomies of concepts to represent information regarding how personal data is processed in the form of an ontology or a knowledge graph.		Duration	me@harshp.com	https://w3id.org/dpv#$1				False																								dpv								
dqv	Data Quality Vocabulary	https://www.w3.org/TR/vocab-dqv/	The Data Quality Vocabulary (DQV) is seen as an extension to DCAT to cover the quality of the data, how frequently is it updated, whether it accepts user corrections, persistence commitments etc. When used by publishers, this vocabulary will foster trust in the data amongst developers.		QualityAnnotation						False													dqv																dqv			
dragondb.allele	DragonDB Allele	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.	^\w+$	cho		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Allele				True				DRAGONDB.ALLELE										dragondb.allele	dragondb.allele																	
dragondb.dna	DragonDB DNA	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.	^\d\w+$	3hB06		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA				True				DRAGONDB.DNA										dragondb.dna	dragondb.dna																	
dragondb.locus	DragonDB Locus	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.	^\w+$	DEF		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Locus				True				DRAGONDB.LOCUS										dragondb.locus	dragondb.locus																	
dragondb.protein	DragonDB Protein	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.	^\w+$	AMDEFA		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide				True				DRAGONDB.PROTEIN										dragondb.protein	dragondb.protein																	
dramp	Data Repository of Antimicrobial Peptides	http://dramp.cpu-bioinfor.org	Identifiers repesent antimicrobial peptides in the Data Repository of Antimicrobial Peptides (DRAMP) database which is an open-access, manually curated database of antimicrobial peptides (AMPs).	^DRAMP\d{5}$	DRAMP00005	zhengh18@hotmail.com	http://dramp.cpu-bioinfor.org/browse/All_Information.php?id=$1				False																																
drao	Domain Resource Application Ontology	http://www.fairsharing.org	A project supporting the DRAO application ontology, a hierarchy of specific research domains and descriptors which imports subsets of terms from over 40 publicly-available terminologies. (from repository)	^\d{7}$	0000001	allyson.lister@oerc.ox.ac.uk	http://www.fairsharing.org/ontology/domain/DRAO_$1	https://github.com/FAIRsharing/domain-ontology/raw/refs/heads/master/DRAO.owl	https://github.com/FAIRsharing/domain-ontology/raw/refs/heads/master/DRAO.obo		False																																
drc.filenumber	Dutch Research Council File Number	https://www.nwo.nl/en/	Dutch Research Council file numbers are used for approved grants.		osf232097		https://www.nwo.nl/en/projects/$1				False																																
drduke	Dr. Duke's Phytochemical and Ethnobotanical Databases chemical	https://phytochem.nal.usda.gov/phytochem/search/list	identifier for chemicals linked to information on occurrence in plants		19		https://phytochem.nal.usda.gov/phytochem/chemicals/show/$1				False																											P10074					
drks	German Clinical Trials Register	http://drks.de	The German Clinical Trials Register (DRKS) is the German WHO primary registry. It is competent for the registration of all patient-oriented clinical trials conducted in Germany. The DRKS now contains well over 14,000 studies. Currently, around 2,000 studies are added annually. (from website)	^DRKS\d+$	DRKS00031815		https://drks.de/search/en/trial/$1				False																																
dron	The Drug Ontology	https://github.com/ufbmi/dron	An ontology to support comparative effectiveness researchers studying claims data.	^\d{8}$	00023232	hoganwr@gmail.com	http://purl.obolibrary.org/obo/DRON_$1		http://purl.obolibrary.org/obo/dron.obo		False	DRON			DRON	DRON											dron	dron	DRON										Q81661592				
drsanv0	AnVIL DRS	https://www.genome.gov/	This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research.   	^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$	v2_1b0f158a-86e2-3887-b990-89e3cf2d9082		https://data.terra.bio/ga4gh/drs/v1/objects/$1				False														drs.anv0																		
drsc	Drosophila RNAi Screening Center	http://flyrnai.org/	The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.	^DRSC\d+$	DRSC05221		http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1				False				DRSC										drsc	drsc																	
drugbank	DrugBank	http://www.drugbank.ca	The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.	^DB\d{5}$	DB14938	david.wishart@ualberta.ca	https://go.drugbank.com/drugs/$1			DRUGBANK_ID|DrugBank	False			18377	DrugBank		DrugBank	000406			2326		nbdc01071		drugbank	drugbank				221		drugbank	r3d100010544			Drugbank	DB-0019	P715	Q1122544				
drugbank.bioentity	DrugBank Target v4	http://www.drugbank.ca/targets	The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.	^BE\d{7}$	BE0000048	david.wishart@ualberta.ca	https://go.drugbank.com/bio_entities/$1			drugbank.target|drugbankv4.target	False				DRUGBANKV4.TARGET										drugbankv4.target	drugbankv4.target																	
drugbank.category	DrugBank Drug Category	https://go.drugbank.com/categories	Close to 5K Categorizations for drugs, similar to ATCC.	^DBCAT\d+$	DBCAT000600	david.wishart@ualberta.ca	https://www.drugbank.ca/categories/$1				False																																
drugbank.condition	DrugBank Condition	https://go.drugbank.com	Indications and other conditions in drugbank	^DBCOND\d+$	DBCOND0066902	david.wishart@ualberta.ca	https://go.drugbank.com/indications/$1				False																																
drugbank.metabolite	DrugBank Metabolite	https://go.drugbank.com	Metabolites in drugbank	^DBMET\d+$	DBMET02292	david.wishart@ualberta.ca	https://go.drugbank.com/metabolites/$1				False																																
drugbank.reaction	DrugBank Reaction	https://go.drugbank.com	Reactions in drugbank	^\d+$	1537	david.wishart@ualberta.ca	https://go.drugbank.com/reactions/$1				False																																
drugbank.salt	DrugBank Salts	http://www.drugbank.ca	DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets.	^DBSALT\d{6}$	DBSALT001211	david.wishart@ualberta.ca	https://go.drugbank.com/salts/$1				False																																
drugcentral	Drug Central	http://drugcentral.org	DrugCentral  provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action.	^\d+$	307	toprea@salud.unm.edu	http://drugcentral.org/drugcard/$1	https://w3id.org/biopragmatics/resources/drugcentral/drugcentral.owl	https://w3id.org/biopragmatics/resources/drugcentral/drugcentral.obo	Drug_Central	False												nbdc02192		drugcentral												DB-0239	P11198					
dsm4	Diagnostic and Statistical Manual of Mental Disorders (4th Edition)	https://en.wikipedia.org/wiki/Diagnostic_and_Statistical_Manual_of_Mental_Disorders#DSM-IV-TR_(2000)	A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]	^\d+\.\d+$	315.1					dsm-iv	False											2.16.840.1.113883.6.126																P663	Q3078495				
dsm5	Diagnostic and Statistical Manual of Mental Disorders (5th Edition)	https://en.wikipedia.org/wiki/DSM-5	A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]	^\d{3}\.\d{2}$	312.33					dsm-v	False											2.16.840.1.113883.6.344																P1930					
dsmz	Deutsche Sammlung von Mikroorganismen und Zellkulturen	https://www.dsmz.de	"The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines). The following designations are used as part of local unique identifiers:

- `PC`: positive control
- `NC`: negative control
- `AS`: antiserum
- `PV`: plant viruses
- `RT`: recommended test
- `ACC`: human or animal cell line
- `DSM`: microorganism cell line"	^(ACC|DSM|NC|PC|RT|AS|PV)-\d+$	ACC-1		https://www.dsmz.de/collection/catalogue/details/culture/$1			DSMZCellDive	False						DSMZCellDive																r3d100010219										
dso	Data Science Ontology	https://www.datascienceontology.org/	The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science.		classification-model	evan@epatters.org	https://www.datascienceontology.org/concept/$1				False																																
dsw	Darwin-SW	https://github.com/darwin-sw/dsw	Version 0.4 to 1.0 fixed reversed dsw:locates and dsw:locatedAt. Added labels. Changed comments and descriptions to conform to DC and DwC precedent. Added subClassOf relations to RO hasEvidence and isEvidenceFor. Specified preferred direction for inverse object property pairs., Changes from version 0.2.1 to version 0.3: removal of all functional and inverse function properties of object property terms, use of dwctype classes, deprecation of terms replaced by dwciri: terms, removal of references to TDWG Ontology., Changes from version 0.3 to 0.4 change DwC class namespace from dwctype: to dwc: to follow class proposal, removed references to TDWG TaxonConcept ontology; deprecated terms that now have equivalent terms in Darwin Core., Change from version 1.0 to 1.0.1 Add CC0 license.		DriedSpecimen	steve.baskauf@vanderbilt.edu	http://purl.org/dsw/$1				False		DSW							DSW															dsw								
dto	Drug Target Ontology	https://github.com/DrugTargetOntology/DTO	DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors.	^\d+$	90000018	sschurer@med.miami.edu	http://www.drugtargetontology.org/dto/DTO_$1				False	DTO				DTO																											
duo	Data Use Ontology	https://github.com/EBISPOT/DUO	DUO is an ontology which represent data use conditions.	^\d{7}$	0000046	mcourtot@gmail.com	http://purl.obolibrary.org/obo/DUO_$1				False	DUO			DUO	DUO											duo	duo	DUO						duo				Q113009193				
dwc	Darwin Core Terms	https://dwc.tdwg.org/list/	Darwin Core is a vocabulary standard for transmitting information about biodiversity. This document lists all terms in namespaces currently used in the vocabulary.		Dataset	gtuco.btuco@gmail.com	http://rs.tdwg.org/dwc/terms/$1				False																																
dwc.doe	Degree of Establishment Controlled Vocabulary	https://dwc.tdwg.org/doe/	The Darwin Core term degreeOfEstablishment provides information about degree to which an Organism survives, reproduces, and expands its range at the given place and time. The Degree of Establishment Controlled Vocabulary provides term that should be used as values for dwc:degreeOfEstablishment and dwciri:degreeOfEstablishment		d001	steve.baskauf@vanderbilt.edu	http://rs.tdwg.org/dwcdoe/$1				False									DWCDOE															dwcdoe								
dwc.em	Establishment Means Controlled Vocabulary	http://rs.tdwg.org/dwc/doc/em/	The Darwin Core term establishmentMeans provides information about whether an organism or organisms have been introduced to a given place and time through the direct or indirect activity of modern humans. The Establishment Means Controlled Vocabulary provides terms that should be used as values for dwc:establishmentMeans and dwciri:establishmentMeans.		e001	tuco@berkeley.edu	http://rs.tdwg.org/dwcem/$1				False									DWCEM															dwcem								
dwc.pw	Darwin Core pathway controlled vocabulary	http://rs.tdwg.org/dwc/doc/pw/	The Darwin Core term pathway provides information about the process by which an Organism came to be in a given place at a given time. The Pathway Controlled Vocabulary provides terms that should be used as values for dwc:pathway and dwciri:pathway.		p001	tuco@berkeley.edu	http://rs.tdwg.org/dwcpw/$1				False									DWCPW															dwcpw								
eaglei	eagle-i	https://hawaii.eagle-i.net	Discovery tool for biomedical research resources available at institutions throughout the U.S.		0000012b-5661-2f63-2f73-b43980000000		http://hawaii.eagle-i.net/i/$1				True						eagle-i																r3d100011564										
earl	Evaluation and Report Language	https://www.w3.org/TR/EARL10/	EARL is a vocabulary, the terms of which are defined across a set of specifications and technical notes, and that is used to describe test results. The primary motivation for developing this vocabulary is to facilitate the exchange of test results between Web accessibility evaluation tools in a vendor-neutral and platform-independent format. It also provides reusable terms for generic quality assurance and validation purposes. [from homepage]		Assertion		http://www.w3.org/ns/earl#$1				False													earl																earl			
earthcube.aut	Audience Types Controlled Vocabulary	http://cor.esipfed.org/ont/earthcube/AUT	The Audience Types Controlled Vocabulary was created for NSF's EarthCube program's Resource Registry. The vocabulary defines the types of audience each resource in the program is targeted to.  At this point the vocabulary is very bare - no term definitions even; however, the intention is to extend the vocabulary over time.  If you would like to assist with this or in extending any of the other controlled vocabularies/ontologies developed as part of the Resource Registry project, please see https://github.com/earthcubearchitecture-ecresourcereg.	^\d{7}$	0000001	ruth.duerr3@gmail.com	http://cor.esipfed.org/ont/earthcube/AUT_$1				False																																
earthcube.mola	Data Model Language Controlled Vocabulary	http://cor.esipfed.org/ont/earthcube/mola	The Data Model Language Controlled Vocabulary was created for NSF's EarthCube Program's Resource Registry.  At this point it merely lists a few of the languages used by data model resources in the registry.	^\d+$	000001	ruth.duerr3@gmail.com	http://cor.esipfed.org/ont/earthcube/MOLA_$1				False																																
earthcube.sfo	Software Functions Ontology	http://cor.esipfed.org/ont/earthcube/sfo	This ontology defines a taxonomy of software functions based on the work of the NSF-funded EarthCube Resource Registry working group.  The functions are generally organized by their role in the research process.	^\d{7}$	0000001	ruth.duerr3@gmail.com	http://cor.esipfed.org/ont/earthcube/SFO_$1				False																																
earthcube.srt	Semantic Resource Types Vocabulary	http://cor.esipfed.org/ont/earthcube/srt	The Semantic Resource Types Vocabulary was created for NSF's EarthCube Program's Resource Repository. Includes entries for things like 'thesaurus', 'ontology', 'controlled vocabulary', 'taxonomy'.	^\d+$	000001	ruth.duerr3@gmail.com	http://cor.esipfed.org/ont/earthcube/srt_$1				False																																
earthcube.swl	Software Licenses Ontology	https://earthcubearchitecture-ecresourcereg.github.io/swl/index-en.html	This mini-ontology contains classes and instances for each version of the licenses that are commonly used in software projects, particularly open source software projects. The URI's for each are the canonical URI's for that license (where they exist).	^\d{7}$	0000013	ruth.duerr3@gmail.com	http://cor.esipfed.org/ont/SWL_$1				True																																
easychair.cfp	EasyChair Call for Paper	https://easychair.org/cfp/	Conferences in EasyChair		SysBioCancer2022		https://easychair.org/cfp/$1				False																																
easychair.topic	EasyChair Topic	https://easychair.org/cfp/	Call for paper topics in EasyChair	^\d+$	27106865		https://easychair.org/cfp/topic.cgi?tid=$1				False																																
ebisc	European Bank for induced pluripotent Stem Cells	https://www.ebisc.org	Cell line collections (Providers)	^E(S|D)i\d+-\w$	ESi007-A		https://cells.ebisc.org/$1				False						EBiSC																										
ec	Enzyme Nomenclature	https://www.enzyme-database.org/	"The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories.

The Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html).

There are few notable resources providing access to the Enzyme Nomenclature:

<table class=""table table-striped""><thead><tr><th>Website</th><th>Homepage</td><th>Notes</td></tr></thead><tbody><tr><td>ExplorEnz</td><td><a href=""https://www.enzyme-database.org"">https://www.enzyme-database.org</a></td><td>This is the resource officially recommended by IUBMB</td></tr><tr><td>IUBMB (via by Queen Mary)</td><td><a href=""https://iubmb.qmul.ac.uk/enzyme"">https://iubmb.qmul.ac.uk/enzyme</a></td><td>This is a web-based version of the <a href=""https://archive.org/details/enzymenomenclatu0000inte_d6c2"">1992 publication</a>.</td></tr><tr><td>IntEnz</td><td><a href=""https://www.ebi.ac.uk/intenz"">https://www.ebi.ac.uk/intenz</a></td><td>Shutdown in 2024</td></tr><tr><td>ExPaSy</td><td><a href=""https://enzyme.expasy.org"">https://enzyme.expasy.org</a></td></tr><tr><td>EnzymePortal</td><td><a href=""https://www.ebi.ac.uk/enzymeportal"">https://www.ebi.ac.uk/enzymeportal</a></td><td></td></tr></tbody></table>"	^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.[nB]\d{1,3}|\.-\.-\.-|\.\d{1,3}\.-\.-|\.\d{1,3}\.\d{1,3}\.-)?$	1.1.1.1	kristian.axelsen@sib.swiss	https://www.enzyme-database.org/query.php?ec=$1	https://w3id.org/biopragmatics/resources/ec/ec.owl	https://w3id.org/biopragmatics/resources/ec/ec.obo	EC|EC number|EC-CODE|ECCODE|EC_CODE|ec-code|eccode|intenz	False			671	EC-CODE						1011		nbdc00508		ec-code	ec-code		ec		106		intenz	r3d100010803			Ec	DB-0024	P591	Q741108				
ecacc	European Collection of Authenticated Cell Culture	https://www.phe-culturecollections.org.uk/collections/ecacc.aspx	The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).	^\d+$	90062901		https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1				False						ECACC																										
ecao	The Echinoderm Anatomy and Development Ontology	https://github.com/echinoderm-ontology/ecao_ontology	None	^\d{7}$	0107180	ettensohn@cmu.edu	http://purl.obolibrary.org/obo/ECAO_$1				False	ECAO				ECAO											ecao	ecao	ECAO										Q113012596				
ecg	Electrocardiogram Ontology	https://bioportal.bioontology.org/ontologies/ECG	The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.	^\d+$	000000159	rwinslow@jhu.edu	http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_$1			ECGOntology	False	ECG				ECG																											
echinobase	Echinobase	https://www.echinobase.org	Echinobase supports the international research community by providing a centralized, integrated and easy to use web based resource to access the diverse and rich, functional genomics data of echinoderm species.	^\d+$	23159291		https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1				False												nbdc01512																				
echobase	EchoBASE post-genomic database for Escherichia coli	http://www.york.ac.uk/	EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.	^EB\d+$	EB0170	gavin.thomas@york.ac.uk	http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1				False				ECHOBASE										echobase	echobase						echobase	r3d100011646				DB-0020						
eclas	European Commission Library Thesaurus	https://op.europa.eu	Dating from 1978 when catalogues of the Central Library of the Commission of the European Communities (now the European Union) were computerised, ECLAS is a thesaurus created by the Central Library of the Commission of the European Communities for indexing the publications and documents acquired by the Central Library of the Commission. ECLAS was based on the Macrothesaurus of OECD and complemented by the ILO thesaurus. After creation of EUROVOC in 1984, convergence started in order to bring ECLAS in line with EUROVOC, but it was never complete. ECLAS contains nineteen areas of interest in a hierarchical tree structure consisting of four levels. ECLAS is fully available in English and in French. The OP COMM ECLAS is maintained by the Publications Office of the European Union on the EU Vocabularies website.		004.11.00.0100		http://data.europa.eu/bkc/notation_$1				False																								eclas								
ecmdb	E. coli Metabolite Database	https://ecmdb.ca	The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.	^ECMDB\d+$	ECMDB00005		http://ecmdb.ca/compounds/$1			ECMDB	False																			386									Q17052437				
ecn	EC number	https://echa.europa.eu/information-on-chemicals	identifier for a chemical compound per EINECS or ELINCS	^\d{3}-\d{3}-\d$	200-003-9		https://www.echa.europa.eu/information-on-chemicals/ec-inventory/-/dislist/details/$1				False							000447																				P232					
eco	Evidence and Conclusion Ontology	https://www.evidenceontology.org	Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.	^\d{7}$	0007807	mgiglio@som.umaryland.edu	http://purl.obolibrary.org/obo/ECO_$1				False	ECO		1028	ECO	ECO									eco	eco	eco	eco	ECO			eco						P3811	Q28445410				
ecocore	An ontology of core ecological entities	https://github.com/EcologicalSemantics/ecocore	Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.	^\d+$	00000001	p.buttigieg@gmail.com	http://purl.obolibrary.org/obo/ECOCORE_$1				False	ECOCORE			ECOCORE	ECOCORE				ECOCORE							ecocore	ecocore	ECOCORE										Q81661598				
ecocyc	EcoCyc	https://ecocyc.org/	EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.		AICARTRANSIMPCYCLO-CPLX	pkarp@ai.sri.com	https://ecocyc.org/gene?id=$1				False												nbdc00262							9			r3d100011277										
ecogene	Database of Escherichia coli Sequence and Function	http://ecogene.org/	The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.	^EG\d+$	EG10173		http://www.ecogene.org/gene/$1				True				EcoGene										ecogene	ecogene						ecogene	r3d100010546										
ecolexicon	EcoLexicon	http://ecolexicon.ugr.es/en/index.htm	EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology.		canal						False																																
ecoliwiki	EcoliWiki from EcoliHub	http://ecoliwiki.net/colipedia/	EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.	^[A-Za-z0-9-]+$	aaeA	pkarp@ai.sri.com	http://ecoliwiki.net/colipedia/index.php/$1:Gene				False				ECOLIWIKI								nbdc02041		ecoliwiki	ecoliwiki																	
ecso	The Ecosystem Ontology	http://bioportal.bioontology.org/ontologies/ECSO	DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases	^\d+$	00000532	brycemecum@gmail.com	http://purl.dataone.org/odo/ECSO_$1	https://raw.githubusercontent.com/DataONEorg/sem-prov-ontologies/run4/observation/d1-ECSO.owl			False	ECSO				ECSO				ECSO															ecso								
ecto	Environmental conditions, treatments and exposures ontology	https://github.com/EnvironmentOntology/environmental-exposure-ontology	ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).	^\d{7}$	0000001	annethessen@gmail.com	http://purl.obolibrary.org/obo/ECTO_$1				False	ECTO	ECTO			ECTO											ecto	ecto	ECTO										Q113012651				
ecyano.entity	E-cyanobacterium entity	http://www.e-cyanobacterium.org/bcs/entity/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.	^\d+$	23		https://www.e-cyanobacterium.org/bcs/entity/$1				False				ECYANO.ENTITY										ecyano.entity	ecyano.entity																	
ecyano.experiment	E-cyanobacterium Experimental Data	https://www.e-cyanobacterium.org/experiments-repository/	E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments.	^\d+$	18		https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1				False														ecyano.experiment																		
ecyano.model	E-cyanobacterium model	http://e-cyanobacterium.org/models/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.	^\d+$	26		https://e-cyanobacterium.org/models/model/$1				False				ECYANO.MODEL										ecyano.model	ecyano.model																	
ecyano.rule	E-cyanobacterium rule	http://www.e-cyanobacterium.org/bcs/rule/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.	^\d+$	56		https://e-cyanobacterium.org/bcs/rule/$1				False				ECYANO.RULE										ecyano.rule	ecyano.rule																	
edam	EDAM Ontology	http://edamontology.org	EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).	^(data|topic|operation|format)\_\d{4}$	data_1664	matus.kalas@uib.no	https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False	EDAM	EDAM		EDAM	EDAM									edam	edam		edam	EDAM			edam			edam								
edam.data	EDAM Data	http://edamontology.org	Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.	^\d+$	1664	matus.kalas@uib.no	http://edamontology.org/data_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																																
edam.format	EDAM Format	http://edamontology.org	A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data.	^\d+$	1915	matus.kalas@uib.no	http://edamontology.org/format_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																																
edam.operation	EDAM Operation	http://edamontology.org	A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state.	^\d+$	0004	matus.kalas@uib.no	http://edamontology.org/operation_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																																
edam.topic	EDAM Topic	http://edamontology.org	A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.	^\d+$	0003	matus.kalas@uib.no	http://edamontology.org/topic_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																																
edcc	EDCC Taxonomy	https://op.europa.eu	EDCC Taxonomy contains the terms that are used to classify citizens' requests to the Europe Direct Contact Centre (EDCC). EDCC Taxonomy is maintained by the Directorate-General for Communication of the European Commission and published by the Publications Office of the European Union on the EU Vocabularies website.		00098e55		http://data.europa.eu/ett/kos/c_$1				False																								edcc								
edda	EDDA Study Designs Taxonomy	https://bioportal.bioontology.org/ontologies/EDDA	Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries.		health_care_quality_assessment	tanja.bekhuis@tcbinfosci.com	http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#$1				False	EDDA				EDDA																											
edm	Europeana Data Model vocabulary	http://pro.europeana.eu/edm-documentation	The Europeana Data Model (EDM) is aimed at being an integration medium for collecting, connecting and enriching the descriptions provided by Europeana data providers. The RDF vocabulary for http://www.europeana.eu/schemas/edm/ defines the elements introduced by EDM (as opposed to the ones EDM re-uses from other namespaces).		Event		http://www.europeana.eu/schemas/edm/$1	https://github.com/europeana/metis-schema/raw/94c73a16320977fac121acfa366072e8e07e9158/src/main/resources/rdf_examples/edm.owl			False													edm																			
edm.fibo	Financial Industry Business Ontology	https://github.com/edmcouncil/fibo	FIBO defines the sets of things that are of interest in financial business applications and the ways that those things can relate to one another. In this way, FIBO can give meaning to any data (e.g., spreadsheets, relational databases, XML documents) that describe the business of finance		BE/MetadataBE/BEDomain		https://spec.edmcouncil.org/fibo/ontology/$1				False																								fibo								
educor	An Educational and Career-Oriented Recommendation Ontology	http://ontology.tib.eu/educor/	An educational ontology for personalised recommendation learning systems that is based on learning path and user profile. It represents the key components for a personalised learning system based on our requirement analysis.		stri	ilkou@l3s.de	https://github.com/tibonto/educor#$1				False																																
efo	Experimental Factor Ontology	http://www.ebi.ac.uk/efo	The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.	^\d{7}$	0005147	plwhetzel@gmail.com	http://www.ebi.ac.uk/efo/EFO_$1	http://www.ebi.ac.uk/efo/efo.owl	http://www.ebi.ac.uk/efo/efo.obo		False	EFO	EFO		EFO	EFO	EFO								efo	efo		efo	EFO						efo			P11956					
ega	European Genome-phenome Archive	https://ega-archive.org/	The European Genome-phenome Archive (EGA) is a global network for permanent archiving and sharing of personally identifiable genetic, phenotypic, and clinical data generated for the purposes of biomedical research projects or in the context of research-focused healthcare systems. Jointly managed by the European Bioinformatics Institute (EMBL-EBI) in Cambridge (UK) and the Centre for Genomic Regulation (CRG) in Barcelona.	^EGA[SCPNRXZDBF][0-9]{11}$	EGAD00001008392		https://ega-archive.org/identifiers/$1				False						EGA				2383				ega																		
ega.dataset	European Genome-phenome Archive Dataset	https://ega-archive.org/	The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.	^EGAD\d{11}$	EGAD00000000001	tk2@ebi.ac.uk	https://www.ebi.ac.uk/ega/datasets/$1				False				EGA.DATASET										ega.dataset	ega.dataset							r3d100011242										
ega.study	European Genome-phenome Archive Study	https://www.ebi.ac.uk/ega/studies	The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.	^EGAS\d{11}$	EGAS00000000001		https://www.ebi.ac.uk/ega/studies/$1				False				EGA.STUDY										ega.study	ega.study																	
eggnog	eggNOG	http://eggnog.embl.de/version_3.0/	eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories).	^\w+$	veNOG12876	j.huerta@csic.es	http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1				True				EGGNOG										eggnog	eggnog						eggnog					DB-0152						
ehda	Human developmental anatomy, timed version	http://genex.hgu.mrc.ac.uk/	A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once.	^\d+$	1	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDA_$1				True	EHDA			EHDA	EHDA											ehda					ehda							Q114677884				
ehdaa	Human developmental anatomy, abstract version	http://genex.hgu.mrc.ac.uk/	A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just <i>heart</i> really means <i>heart (CS 9-20)</i>. Timing details will be added to the abstract version of the ontology in a future release.	^\d+$	1	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDAA_$1				True	EHDAA			EHDAA	EHDAA											ehdaa					ehdaa							Q114677885				
ehdaa2	Human developmental anatomy, abstract	https://github.com/obophenotype/human-developmental-anatomy-ontology	A structured controlled vocabulary of stage-specific anatomical structures of the developing human.	^\d{7}$	0000000	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDAA2_$1			EHDAA2_RETIRED|HDAA2|RETIRED_EHDAA2	True	EHDAA2			EHDAA2	EHDAA2											ehdaa2	ehdaa2	EHDAA2										Q114667913				
ejprd	European Joint Programme for Rare Disease Ontology	https://github.com/EBISPOT/EJP-Ontology	This ontology is designed to support data search, retrieval and information identification in the EJP-RD catalogs which covers the registries and biobanks for rare diseases. (from repository)		alternative_term		http://purl.org/ejp-rd/vocabulary/$1	https://github.com/EBISPOT/EJP-Ontology/raw/refs/heads/master/ejp-rd.owl			False																																
eli	ELI Metadata Ontology	https://op.europa.eu/en/web/eu-vocabularies/eli	An ontology to describe legislation, based on the FRBR model, that encodes the ELI metadata fields.		InForce		http://data.europa.eu/eli/ontology#$1				False													eli																			
elm	Eukaryotic Linear Motif Resource	http://elm.eu.org/	Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances.	^[A-Za-z_0-9]+$	CLV_MEL_PAP_1	toby.gibson@embl.de	http://elm.eu.org/elms/elmPages/$1.html				False				ELM										elm	elm											DB-0223						
elsst	European Language Social Science Thesaurus	https://elsst.cessda.eu/id/3/	The European Language Social Science Thesaurus (ELSST) is a broad-based, multilingual thesaurus for the social sciences. It is owned and published by the Consortium of European Social Science Data Archives (CESSDA) and its national Service Providers. The thesaurus consists of over 3,000 concepts and covers the core social science disciplines: politics, sociology, economics, education, law, crime, demography, health, employment, information and communication technology and, increasingly, environmental science. [from homepage]		ffdd3a7e-f82e-4600-98b1-20402e74b0a6	alen.vodopijevec@cessda.eu	https://elsst.cessda.eu/id/3/$1				False			14																													
emap	Mouse gross anatomy and development, timed	http://emouseatlas.org	A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).	^\d+$	1	Terry.Hayamizu@jax.org	http://purl.obolibrary.org/obo/EMAP_$1				True				EMAP	EMAP											emap	emap				emap.ontology											
emapa	Mouse Developmental Anatomy Ontology	http://www.informatics.jax.org/expression.shtml	An ontology for mouse anatomy covering embryonic development and postnatal stages.	^\d+$	26753	Terry.Hayamizu@jax.org	http://purl.obolibrary.org/obo/EMAPA_$1			EMAPA_RETIRED	False	EMAPA		549	EMAPA	EMAPA											emapa	emapa	EMAPA										Q113012656				
emaps	Mouse Developmental Anatomy Ontology with Theiler Stage	https://www.informatics.jax.org/vocab/gxd/anatomy/	EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823	^\d+$	3517823	Terry.Hayamizu@jax.org	https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1				False																																
emdb	Electron Microscopy Data Bank	https://www.ebi.ac.uk/pdbe/emdb/	The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.	^EMD-\d{4,5}$	EMD-1001	help@emdatabank.org	https://www.ebi.ac.uk/pdbe/entry/emdb/$1				False				EMDB						1146				emdb	emdb							r3d100010562				DB-0272						
emea	European Medicines Evaluation Agency	https://www.ema.europa.eu/en/medicines	Product number for the European Medicines Agency		EMEA/H/C/000181						False																																
emg	Electron Microscopy Glossary	https://purls.helmholtz-metadaten.de/emg	The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]	^\d{8}$	00000005	oonagh.mannix@helmholtz-berlin.de	https://purls.helmholtz-metadaten.de/emg/EMG_$1	https://owl.emglossary.helmholtz-metadaten.de/ontology.owl			False																																
emi	Earth Metabolome Ontology	https://www.dbgi.org/earth_metabolome_ontology/	The EMI ontology is used to structure spectrum annotation provenance by reusing the PROV-O ontology (a W3C recommendation) and sample and observation data by applying the SOSA ontology. EMI reuses the SOSA ontology as a data schema for struturing the Sample and Observation data. SOSA (Sensor, Observation, Sample, and Actuator) is a subset of SSN (Semantic Sensor Network Ontology) that is a W3C recommendation. [from homepage]		ChemicalStructure	Tarcisio.Mendes@sib.swiss	https://www.dbgi.org/earth_metabolome_ontology/#$1				False																	emi															
emmo	Elementary Multiperspective Material Ontology	https://emmo-repo.github.io	EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)		03212fd7_abfd_4828_9c8e_62c293052d4b	jesper.friis@sintef.no	http://emmo.info/emmo#EMMO_$1				False			20705										emmo											emmo								
emmo.cif	Crystallographic Information Framework	https://www.iucr.org/resources/cif	A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)		_space_group_symop.operation_xyz	jesper.friis@sintef.no	http://emmo.info/emmo/cif-core#$1				False																								cif								
emolecules	Reaxys eMolecules	https://reaxys.emolecules.com	Catalog of purchasable reagents and building blocks	^\d+$	491187		https://reaxys.emolecules.com/cgi-bin/more?vid=$1				False																																
empiar	Electron Microscopy Public Image Archive	https://www.ebi.ac.uk/pdbe/emdb	EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure	^\d+$	10595	ardan@ebi.ac.uk	https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1				False														empiar																		
empty	Experimental Measurements Purposes and Treatments ontologY	https://github.com/Waltham-Data-Science/empty-ontology	The Experimental Measurements, Purposes, and Treatments ontologY (EMPTY) is a structured vocabulary designed to capture and standardize the scientific reasoning behind experimental measurements. It addresses a critical gap in existing metadata standards, which primarily focus on technical specifications rather than scientific intent. The ontology provides a common language to express why a measurement was taken and the conceptual conditions under which it should be interpreted. By focusing on experimental purposes and treatments, EMPTY is designed to significantly improve the findability, interoperability, and reusability of scientific data. This enables researchers to discover relevant datasets for meta-analyses and cross-disciplinary research based on shared scientific goals. (from https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2753)	^\d+$	00000085		http://purl.obolibrary.org/obo/EMPTY_$1	https://github.com/Waltham-Data-Science/empty-ontology/raw/refs/heads/main/empty.owl	https://github.com/Waltham-Data-Science/empty-ontology/raw/refs/heads/main/empty.obo		False																																
emsl.project	Environmental Molecular Sciences Laboratory Project	https://www.emsl.pnnl.gov/projects	"As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:
- Research team and institution
- The EMSL project DOI
- Link to project data available in EMSLs Data Portal
- Project type"	^\d+$	60141	montana.smith@pnnl.gov	https://www.emsl.pnnl.gov/project/$1				False																																
ena.embl	European Nucleotide Archive	https://www.ebi.ac.uk/ena/	The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.	^[A-Z]+[0-9]+(\.\d+)?$	BN000065	datasubs@ebi.ac.uk	https://www.ebi.ac.uk/ena/browser/view/$1			ena	False				ENA.EMBL								nbdc00432		ena.embl	ena.embl						ena	r3d100010527				DB-0022						insdc.run
encode	Encyclopedia of DNA Elements	https://www.encodeproject.org	The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.	^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$	ENCSR163RYW	gabdank@stanford.edu	https://www.encodeproject.org/$1				False				ENCODE		ENCODE								encode	encode							r3d100013051										
endlessforms.collection	EndlessForms Studio Image Collections	https://images.endlessforms.info/	Collections of images, based on topics, such as the human skull collection	^\d+$	2	mclarkson@uky.edu	https://images.endlessforms.info/collection/$1				False																																
endlessforms.element	EndlessForms Studio Element	https://graphics.endlessforms.info	A reusable element of a vector graphic for an anatomical entity useful for biological and biomedical informatics applications.		HUMAN0000174	mclarkson@uky.edu	https://graphics.endlessforms.info/element?id=$1				False																																
endlessforms.graphic	EndlessForms Studio Graphic	https://endlessforms.info	A vector graphic for an anatomical entity useful for biological and biomedical informatics applications.		HUMAN0000789	mclarkson@uky.edu	https://endlessforms.info/graphics/$1				False																																
endlessforms.image	EndlessForms Studio Image	https://images.endlessforms.info/	Images used as reference	^\d+$	3	mclarkson@uky.edu	https://images.endlessforms.info/image/$1				False																																
endlessforms.library	EndlessForms Studio Library	https://graphics.endlessforms.info	A collection of graphics that relate to a theme		HUMAN0000001	mclarkson@uky.edu	https://graphics.endlessforms.info/library?id=$1				False																																
endlessforms.unit	EndlessForms Studio Unit	https://graphics.endlessforms.info	A unit of a vector graphic for an anatomical entity useful for biological and biomedical informatics applications.		HUMAN0000304	mclarkson@uky.edu	https://graphics.endlessforms.info/unit?id=$1				False																																
energymarketroles	Energy Market Roles ontology	https://innoweb.mondragon.edu/ontologies/dabgeo/common-domain/energymarketroles/1.0/	The 'Energy Market Roles' ontology module represents the energy market roles of energy agents. Additionally, it includes the consumer role, as it is reused in most of Smart Grid scenarios. This ontology module reuses the knowledge of the 'Actor' ontology module.				http://www.purl.org/dabgeo/conceptual/energymarketroles#$1				False																								energymarketroles								
enm	eNanoMapper ontology	http://www.enanomapper.net/	The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.	^\d+$	8000221	egon.willighagen@maastrichtuniversity.nl	http://purl.enanomapper.org/onto/ENM_$1				False	ENM				ENM												enm							enm								
ensembl	Ensembl Gene	https://www.ensembl.org/	Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.	^((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$	ENSG00000139618	flicek@ebi.ac.uk	https://www.ensembl.org/id/$1			Ensembl	False				ENSEMBL						2610		nbdc00054		ensembl	ensembl						ensembl	r3d100010228				DB-0023	P594	Q7187				
ensembl.bacteria	Ensembl Bacteria	https://bacteria.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.	^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$	MU9_3181	flicek@ebi.ac.uk	https://bacteria.ensembl.org/id/$1				False				ENSEMBL.BACTERIA								nbdc00433		ensembl.bacteria	ensembl.bacteria						ensembl.bacteria	r3d100011195				DB-0147						
ensembl.fungi	Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.	https://fungi.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.	^[A-Z-a-z0-9]+$	CADAFLAT00006211	flicek@ebi.ac.uk	https://fungi.ensembl.org/id/$1				False				ENSEMBL.FUNGI								nbdc00434		ensembl.fungi	ensembl.fungi						ensembl.fungi	r3d100011196				DB-0148						
ensembl.metazoa	Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa.	https://metazoa.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes.	^\w+(\.)?\d+$	FBtr0084214	flicek@ebi.ac.uk	https://metazoa.ensembl.org/id/$1				False				ENSEMBL.METAZOA								nbdc00435		ensembl.metazoa	ensembl.metazoa						ensembl.metazoa	r3d100011198				DB-0149						
ensembl.plant	Ensembl Plants	https://plants.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.	^\w+(\.\d+)?(\.\d+)?$	AT1G73965		https://plants.ensembl.org/id/$1				False				ENSEMBL.PLANT										ensembl.plant	ensembl.plant						ensembl.plant											
ensembl.protist	Ensembl Protists	https://protists.ensembl.org	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes.	^\w+$	PF3D7_1328700		https://protists.ensembl.org/id/$1				False				ENSEMBL.PROTIST										ensembl.protist	ensembl.protist						ensembl.protist											
ensemblglossary	Ensembl Glossary	http://ensembl.org/glossary	The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.	^\d{7}$	0000198		http://ensembl.org/glossary/ENSGLOSSARY_$1				False																	ensemblglossary															
envipath	enviPath	https://envipath.org/	enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.	^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$	32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea	admin@envipath.org	https://envipath.org/package/$1				False												nbdc02011		envipath								r3d100012715										
envo	Environment Ontology	http://environmentontology.org/	The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations.	^\d{7,8}$	09200010	pier.buttigieg@awi.de	http://purl.obolibrary.org/obo/ENVO_$1				False	ENVO	ENVO	562	ENVO	ENVO									envo	envo	envo	envo	ENVO						envo				Q31110555				
envthes	Thesaurus for long-term ecological research, monitoring, experiments	https://github.com/LTER-Europe/EnvThes	The Environmental Thesaurus is a controlled vocabulary built to aid integration of the data resulting from long term ecological research and monitoring in Europe (eLTER). It provides described and semantically well defined terms for later analysis and it serves as harmonized specification of parameters in the observation and measurement of ecosystem processes.		03733596-c643-4c14-a7bc-3048591a3f2d	barbara.magagna@umweltbundesamt.at	http://vocabs.lter-europe.net/EnvThes/$1				False	ENVTHES		20684		ENVTHES				ENVTHES															et								
enzo	Enzo Life Sciences	https://www.enzolifesciences.com	Enzo Life Sciences is an antibody vendor.		ALX-210-175		https://www.enzolifesciences.com/$1			Enzo Life Sciences	False																																
eo	Plant Environment Ontology	http://planteome.org/	The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.	^\d{7}$	0007404	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/EO_$1	https://github.com/Planteome/plant-experimental-conditions-ontology/raw/refs/heads/master/peco.owl	https://github.com/Planteome/plant-experimental-conditions-ontology/raw/refs/heads/master/peco.obo		True	EO	EO		EO										eo	eo	eo					eo											
eol	Environment Ontology for Livestock	http://www.atol-ontology.com	The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.	^\d{7}$	0001927	pylebail@rennes.inra.fr	http://purl.org/obo/owlEOL_$1	http://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=eol.owl			False	EOL	EOL			EOL												eol					r3d100011663										
eol.schema	Encyclopedia of Life Schema	https://eol.org/terms/glossary/	Predicates in the Encyclopedia of Life data schema for describing animals, plants, and other organisms		body_symmetry		http://eol.org/schema/terms/$1				False																																
eolife	Encyclopedia of Life	https://eol.org	A collaborative project intended to create an encyclopedia documenting all living species known to science	^\d+$	1044544	secretariat@eol.org	https://eol.org/pages/$1				False																						r3d100010229					P830					
epawaste	EPA Hazardous Wastes	https://www.ecfr.gov/current/title-40/chapter-I/subchapter-I/part-261	This resource provides identifiers for listed hazardous wastes which are substances explicitly identified due to their potential harm to human health and the environment. These are categorized into four groups (F, K, P, and U) based on specific criteria, such as their source or inherent properties.	^[FKPU]\d{3}$	F001	brennan.thomas@epa.gov					False																																
epcc	European Paediatric Cardiac Codes	https://www.aepc.org/european-paediatric-cardiac-coding	Collection of European paediatric cardiac coding files								False																																
epd	Eukaryotic Promoter Database	https://epd.expasy.org/epd/	The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.	^[A-Z-_0-9]+$	TA_H3	Philipp.Bucher@sib.swiss	https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1				False				EPD						2386		nbdc00438		epd	epd											DB-0205						
epio	Epilepsy Ontology	https://github.com/SCAI-BIO/EpilepsyOntology	A application driven Epilepsy Ontology with official terms from the ILAE.	^\d{7}$	0000011	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/EPIO_$1				False	EPIO				EPIO											epio		EPIO										Q113012657				
epo	Epidemiology Ontology	https://code.google.com/p/epidemiology-ontology/	An ontology designed to support the semantic annotation of epidemiology resources				http://purl.obolibrary.org/obo/EPO_$1	https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/epidemiology-ontology/epo.owl			True				EPO												epo		EPO														
epso	Epilepsy and Seizure Ontology	http://prism.case.edu/prism/index.php/EpilepsyOntology	The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. 	^\d{7}$	0000400	satyasahoo@ieee.org	http://www.case.edu/EpilepsyOntology.owl#$1				False	EPSO				EPSO													EPSO														
erm	European Registry of Materials	https://nanocommons.github.io/identifiers/	The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project.	^ERM[0-9]{8}$	ERM00000044	egon.willighagen@gmail.com	https://nanocommons.github.io/identifiers/registry#$1				False							000569							erm	erm																	
ero	eagle-i resource ontology	https://open.med.harvard.edu/wiki/display/eaglei/Ontology	An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.	^\d{7}$	0001655	Marc_Ciriello@hms.harvard.edu	http://purl.obolibrary.org/obo/ERO_$1				True	ERO			ERO	ERO											ero	ero	ERO														
eropmoscow	Endogenous Regulatory OligoPeptide knowledgebase-Moscow	http://erop.inbi.ras.ru	EROP-Moscow is a curated oligopeptide (2-50 amino acid residues) sequence database which strives to provide a high level of annotations (such as descriptions of the structure of an oligopeptide, its source and function, post-translational modifications, etc.).		E00002		http://erop.inbi.ras.ru/result2.php?PepName=$1				False												nbdc00265									eropmoscow											
erudite	Educational Resource Discovery Index Schema	https://www.pagestudy.org/erudite-training-resource-standard	A metadata stadnard to model data science training materials. Later, was replaced by Bioschemas' [training materials specification](http://bioschemas.org/specifications/TrainingMaterial/specification/).		enables		http://www.bigdatau.org/schema#$1				False																																
erv	Human Endogenous Retrovirus Database	https://herv.img.cas.cz/	Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.	^[A-Za-z0-9\-\_]+$	THE1B		https://herv.img.cas.cz/s/$1				False				ERV										erv	erv																	
esco.isco	ESCO - International Standard Classification of Occupations	https://esco.ec.europa.eu/classification	The European Skills, Competences, Qualifications and Occupations (ESCO) International Standard Classification of Occupations (ISCO).		C4		http://data.europa.eu/esco/isco/$1				False																																
esco.model	ESCO Ontology	https://ec.europa.eu/esco/lod/static/model.html	"The ontology of the taxonomy ""European Skills, Competences, qualifications and Occupations"". The ontology considers three ESCO pillars (or taxonomy) and 2 registers. The three pillars are: 1) Occupation, 2) Skill (and competences), and 3) Qualification"		Occupation		https://ec.europa.eu/esco/lod/static/model.html#$1				False																																
esco.occupation	ESCO Occupation	https://esco.ec.europa.eu/en/classification/occupation_main	The ESCO occupations pillar is built on ISCO-08 which serves as its hierarchical structure. ISCO-08 provides the top four levels for the occupations pillar and ESCO occupations are located at level 5 and lower. In ESCO, each occupation is mapped to exactly one ISCO-08 code. [from homepage]		eea2b5c6-48d1-4612-957e-585783b3c7bb		http://data.europa.eu/esco/occupation/$1				False																																
esco.skill	ESCO Skill	http://data.europa.eu/esco/skill	A vocabulary of knowledge, skills and competences relevant to the European labour market. In ESCO v1.2.0, the skills pillar is structured in a hierarchy which contains the following four sub-classifications: 1) Knowledge, 2) Language skills and knowledge, 3) Skills, and 4) Transversal skills. [adapted from homepage]		dc06de9f-dd3a-4f28-b58f-b01b5ae72ab8		http://data.europa.eu/esco/skill/$1				False																																
esldb	eukaryotic Subcellular Localization database	http://gpcr.biocomp.unibo.it/esldb	eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions.		HS000015122		http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1				False																					esldb											
estdab	European Searchable Tumour Line Database	https://www.ebi.ac.uk/ipd/estdab/	Cell line databases/resources	^\d{3}$	046		https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1				True						ESTDAB																										
eu.publication	European Union Publications Office dataset	https://op.europa.eu	Datasets published by the Publications Office of the European Union		euvoc		http://publications.europa.eu/resource/dataset/$1				False																																
eu89h	JRC Data Catalogue	http://data.jrc.ec.europa.eu/	The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.	^[a-z0-9\-_]+$	jrc-eurl-ecvam-chemagora		http://data.europa.eu/89h/$1				False				EU89H										eu89h	eu89h																	
eubopen	Enabling and Unlocking Biology in the Open	https://gateway.eubopen.org	EUbOPEN is a project focusing on organizing chemogenic library collections, advancing chemical probe discovery, profiling bioactive compounds, and making project data more accessible.	^EUB\d{7}$	EUB0000221	tredup@pharmchem.uni-frankfurt.de	https://gateway.eubopen.org/compound/$1				False																																
euclinicaltrials	EU Clinical Trials	https://www.clinicaltrialsregister.eu/	"The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.
It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."	^\d{4}\-\d{6}\-\d{2}$	2008-005144-16		https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1			EUCTR	False				EUCLINICALTRIALS										euclinicaltrials	euclinicaltrials																	
eugenes	Eukaryotic Genes	http://eugenes.org/	euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information.		MGgn0008978	eugenes@iubio.bio.indiana.edu	http://eugenes.org:7072/.bin/fbidq.html?$1				False																					eugenes											
eupath	VEuPathDB ontology	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology	The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.	^\d{7}$	0010316	jiezhen@med.umich.edu	http://purl.obolibrary.org/obo/EUPATH_$1				True	EUPATH			EUPATH	EUPATH											eupath	eupath	EUPATH										Q81661607				
eurofir	European Food Information Resource Network	https://www.eurofir.org	EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries.								False																																
europa.dcf	Digital Competence Framework	https://op.europa.eu/de/home	The Digital Competence Framework for Citizens standard list identifies the key components of digital competence in 5 broader, and a total of 21 narrower areas, with eight proficiency levels for each concept and a few contextualising examples of use. It is maintained by DG EMPL and published by the Publications Office of the European Union on the EU Vocabularies website.		00b51s9rc5		http://data.europa.eu/snb/dcf/$1				False																								dcf								
europe.pic	European Commission Participant Identification Code (PIC)	https://ec.europa.eu/info/funding-tenders/opportunities/portal/screen/how-to-participate/participant-register-search?isExactMatch=true&type=ORGANISATION&order=DESC&pageNumber=1&pageSize=50&sortBy=lastModified	An identifier for an organization	^\d{9}$	881104060		https://ec.europa.eu/info/funding-tenders/opportunities/portal/screen/how-to-participate/org-details/$1				False																																
euroscivoc	European Science Vocabulary	https://op.europa.eu/en/web/eu-vocabularies/dataset/-/resource?uri=http://publications.europa.eu/resource/dataset/euroscivoc	European Science Vocabulary (EuroSciVoc) is the taxonomy of fields of science based on OECD's 2015 Frascati Manual taxonomy. It was extended with fields of science categories extracted from CORDIS content through a semi-automatic process developed with Natural Language Processing (NLP) techniques. (from homepage)		ceaf4ca0-9b09-4313-85a5-2edf1762e443	OP-EU-VOCABULARIES@publications.europa.eu	http://data.europa.eu/8mn/euroscivoc/$1				False			20394						EUROSCIVOC															euroscivoc								
euroscivoc.schema	European Science Vocabulary Ontology	https://op.europa.eu/en/web/eu-vocabularies/dataset/-/resource?uri=http://publications.europa.eu/resource/dataset/euvoc	"The Euvoc ontology, published by the Publications Office of the European Union, supports the development of authority tables (Name Authority Lists or NALs), Eurovoc and EU corporate datasets. It contains a set of classes and properties enabling all the information to be expressed in multilingual format. It helps define relationships between terms and concepts across multiple domains, supporting interoperability and standardization across European Union documentation and databases. It also defines a set a commonly use properties (i.e: start date, end dates, status), and supports the reusability on common data (currencies, languages, countries).

The Euvoc ontology is maintained by the Publications Office of the European Union and disseminated on the EU Vocabularies website."		isTextual						False																																
eurovoc	EuroVoc	https://eur-lex.europa.eu/browse/eurovoc.html	EuroVoc is the EU's multilingual and multidisciplinary thesaurus. It contains keywords, organized in 21 domains and 127 sub-domains, which are used to describe the content of documents in EUR-Lex. [from homepage]	^\d+$	1837	OP-EU-VOCABULARIES@publications.europa.eu	http://eurovoc.europa.eu/$1				False			15						EUROVOC																							
ev	eVOC (Expressed Sequence Annotation for Humans)	http://www.evocontology.org/	Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment.	^\d{7}$	0100011	evoc@sanbi.ac.za	http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$1				True				EV												ev					evoc							Q114677886				
evm	eVOC mouse development stage										True																																
evorao	EVORA Ontology	https://github.com/EVORA-project/evora-ontology	The EVORAO Ontology provides a structured and harmonized vocabulary for describing shareable pathogens as characterized biological materials, along with their derived products and associated services, organized into collections. Developed within the EVORA project, it supports consistent metadata annotation across research infrastructures, promoting findability, accessibility, interoperability, and reusability (FAIR). By aligning with relevant standards and ontologies, EVORAO facilitates cross-domain collaboration, integration, and sharing of pathogenic resources and services to enhance pandemic preparedness and response. While initially focused on virology, EVORAO is designed to be extensible and also supports metadata harmonization for other pathogens. [from repository]		AlternateName	evorao@evora-project.eu	https://w3id.org/evorao/$1				False	EVORAO				EVORAO												evorao															
evr	Event Venue Registry	https://cthoyt.com/evr	"An open, community-driven registry of conference and event venues.

EVR assigns persistent identifiers (PIDs) to make referencing venues FAIR. This is similar to how ORCID assigns PIDs to researchers and ROR assigns PIDs to research organizations.

This benefits researchers assembling information about in-person conferences and events by enabling them to refer in an unambiguous way to the venue where it takes place.

This repository follows the [Open Data, Open Code, Open Infrastructure (O3) principles](https://www.nature.com/articles/s41597-024-03406-w), meaning that the data and code are all in one repository that anyone can contribute to."	^\d{7}$	0000001	cthoyt@gmail.com	https://cthoyt.com/evr/$1				False																																
exac.gene	ExAC Gene	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.	^ENSG\d{11}$	ENSG00000169174		http://exac.broadinstitute.org/gene/$1				False				EXAC.GENE										exac.gene	exac.gene																	
exac.transcript	ExAC Transcript	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.	^ENST\d{11}$	ENST00000407236		http://exac.broadinstitute.org/transcript/$1				False				EXAC.TRANSCRIPT										exac.transcript	exac.transcript																	
exac.variant	ExAC Variant	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.	^\d{1,2}\-\d+\-[GATC]\-[GATC]$	22-46615880-T-C		http://exac.broadinstitute.org/variant/$1				False				EXAC.VARIANT										exac.variant	exac.variant																	
exif	Exif data description vocabulary	http://www.w3.org/2003/12/exif/	Vocabulary to describe an Exif format picture data. All Exif 2.2 tags are defined as RDF properties, as well as several terms to help this schema.		orientation						False													exif																exif			
exmo	Exercise Medicine Ontology	https://github.com/Exercise-Medicine-Ontology/EXMO	A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.		0000008	xyz19940216@163.com	http://purl.obolibrary.org/obo/EXMO_$1				False	EXMO				EXMO											exmo	exmo	EXMO														
exo	Exposure ontology	https://github.com/CTDbase/exposure-ontology	ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics.	^\d{7}$	0000078	annethessen@gmail.com	http://purl.obolibrary.org/obo/ExO_$1			ExO	False	EXO			EXO	EXO											exo	exo	ExO										Q113012658				
fabio	FaBiO, the FRBR-aligned Bibliographic Ontology	https://github.com/sparontologies/fabio	The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references.		d4e2515	silvio.peroni@unibo.it	https://sparontologies.github.io/fabio/current/fabio.html#$1				False	FaBiO								FABIO				fabio											fabio								
facebase	FaceBase Data Repository	https://www.facebase.org	FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.	^FB\d{8}$	FB00000917	ychai@usc.edu	https://www.facebase.org/data/record/#1/isa:dataset/accession=$1				False				FACEBASE								nbdc02022		facebase	facebase							r3d100013263										
factgrid	FactGrid	https://database.factgrid.de	A wikibase for linguistic knowledge	^Q\d+$	Q24708	olaf.simons@pierre-marteau.com	https://database.factgrid.de/viewer/item/$1				False																						r3d100013283										
fair	FAIR Vocabulary	https://w3id.org/fair/principles/terms/FAIR-Vocabulary	This is the formal vocabulary (ontology) describing the FAIR principles.		FAIR		https://w3id.org/fair/principles/terms/$1				False																								fair								
fairsharing	FAIRsharing	https://fairsharing.org/	The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.	^(bsg-[dscp]?\d{6})|(FAIRsharing\.\w+)$	bsg-000052	allyson.lister@oerc.ox.ac.uk	https://fairsharing.org/$1				False				FAIRSHARING										fairsharing	fairsharing							r3d100010142										
fairsharing.organization	FAIRsharing Organization	https://fairsharing.org	An organization in FAIRsharing, including universities, labs, etc.	^\d+$	3851	allyson.lister@oerc.ox.ac.uk	https://fairsharing.org/organisations/$1				False																																
fairsharing.user	FAIRsharing User	https://fairsharing.org	A user of FAIRsharing	^\d+$	5112	allyson.lister@oerc.ox.ac.uk	https://fairsharing.org/users/$1				False																																
faldo	Feature Annotation Location Description Ontology	http://biohackathon.org/resource/faldo	It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources		ForwardStrandPosition	faldo@googlegroups.com	http://biohackathon.org/resource/faldo#$1				False	FALDO	FALDO		faldo	FALDO								faldo																			
fanta	Functional Genome Annotations with Transcriptional Activities	https://fanta.bio	Functional annotations of genomes for studying gene regulation, with a primary focus on cis-regulatory elements (CREs) such as promoters and enhancers.	^FC(HS|MM)_\d+$	FCHS_301358	takeya.kasukawa@riken.jp	https://fanta.bio/cre/$1				False																																
fao	Fungal gross anatomy	https://github.com/obophenotype/fungal-anatomy-ontology/	A structured controlled vocabulary for the anatomy of fungi.	^\d{7}$	0000001	vw253@cam.ac.uk	http://purl.obolibrary.org/obo/FAO_$1				False	FAO			FAO	FAO											fao	fao	FAO			fao							Q81661616				
fao.asfis	Aquatic Sciences and Fisheries Information System	https://www.fao.org/fishery/en/collection/asfis/en	The FAO Statistics Team (NFISS) of Fisheries and Aquaculture Division collates world capture and aquaculture production statistics at either the species, genus, family, or higher taxonomic levels in 3,169 statistical categories (2022 data release) referred to as species items. ASFIS list of species includes 13,417 species items selected according to their interest or relation to fisheries and aquaculture. For each species item stored in a record, codes (ISSCAAP group, taxonomic and 3-alpha) and taxonomic information (scientific name, author(s), family, and higher taxonomic classification) are provided. An English name is available for most of the records, and about one third of them have also a French and Spanish name. Information is also provided about the availability of fishery production statistics on the species item in the FAO databases. (from homepage)	^\d+$	20560		https://www.fao.org/fishery/en/species/$1			asfis	False																																
fbbi	Biological Imaging Methods Ontology	http://cellimagelibrary.org/	A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.	^\d+$	00000268	wawong@gmail.com	http://purl.obolibrary.org/obo/FBbi_$1			FBbi	True	FBbi			FBbi	FBbi											fbbi	fbbi	FBbi			fbbi							Q81661618				
fbbt	Drosophila gross anatomy	http://purl.obolibrary.org/obo/fbbt	An ontology representing the gross anatomy of Drosophila melanogaster.	^\d{8}$	00007294	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBbt_$1			FBbt|FBbt_root	False	FBBT			FBbt	FB-BT											fbbt	fbbt	FBbt			fbbt							Q81661620				
fbcv	FlyBase Controlled Vocabulary	http://purl.obolibrary.org/obo/fbcv	A structured controlled vocabulary used for various aspects of annotation by FlyBase.	^\d{7}$	0000586	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBcv_$1		https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo	FBcv	False	FBCV			FBcv	FB-CV											fbcv	fbcv	FBcv			fbcv							Q81661622				
fbdv	Drosophila development	http://purl.obolibrary.org/obo/fbdv	A structured controlled vocabulary of the development of Drosophila melanogaster.	^\d{8}$	00000000	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBdv_$1			FBdv	False	FBDV			FBdv	FB-DV											fbdv	fbdv	FBdv			fbdv							Q81661623				
fbol	International Fungal Working Group Fungal Barcoding.	http://www.fungalbarcoding.org/	DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.	^\d+$	2224		http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T				True				FBOL										fbol	fbol																	
fbql	FlyBase Qualifiers			^\d+$	00005254						True																																
fbrf	FlyBase Reference Report	https://flybase.org	FlyBase internal citation identifiers	^\d{7}$	0187632		https://flybase.org/reports/FBrf$1				False																																
fbsp	Fly taxonomy	http://www.flybase.org/	The taxonomy of the family <i>Drosophilidae</i> (largely after Baechli) and of other taxa referred to in FlyBase.	^\d{8}$	00000000	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBSP_$1				True	FB-SP			FBSP	FB-SP											fbsp	fbsp											Q114677887				
fbtc	Flybase Cell Line	https://flybase.org	The cell line vocabulary inside FlyBase	^\d{7}$	0000190		https://flybase.org/reports/FBtc$1			FlyBase_Cell_line	False						FlyBase_Cell_line																										
fcb	FAIR Cookbook	https://w3id.org/faircookbook/	"Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).

"	^FCB\d{3}$	FCB005		https://w3id.org/faircookbook/$1			faircookbook	False														fcb																		
fcsfree	Fetal Calf Serum-Free Database	https://fcs-free.org	Cell line databases/resources		240-17-488-3-4-12		https://fcs-free.org/fcs-database?$1				False						FCS-free																										
fda.application	FDA Application	https://fda.report/applications	This prefix is for FDA application identifiers. There are multiple types of FDA applications (https://www.fda.gov/drugs/how-drugs-are-developed-and-approved/types-applications), including New Drug Application (NDA). FDA.report provides access to all FDA databases, including applications, in a single portal, and can resolve FDA application identifiers.	^\d{6}$	070886		https://fda.report/applications/$1				False																																
fema	Flavor and Extract Manufacturers Association	https://www.femaflavor.org	FEMA provides identifiers for flavor ingredients deemed safe for food use. These entities include chemical compounds and natural substances used as flavoring agents, each reviewed by the FEMA Expert Panel for GRAS (Generally Recognized As Safe) status. The identifiers link to safety data and regulatory assessments, including evaluations by the U.S. FDA and, where applicable, the Joint FAO/WHO Expert Committee on Food Additives (JECFA).	^\d+$	4667	staylor@vertosolutions.net					False																																
ferroliganddb	FerroLigandDB	https://ferr.gulab.org.cn/	FerroLigandDB is a meticulously curated, high-quality database of ferroptosis regulators, including inducers and inhibitors.		486	guqiong@mail.sysu.edu.cn	https://ferr.gulab.org.cn/browse/$1				False																																
fhir.implementation	FHIR United States Implementation Guides	https://hl7.org/fhir/us/	A set of guides on implementing various processes within hospitals or healthcare systems.		immds		https://hl7.org/fhir/us/$1				False																																
fidbaudigital.subject	FID BAUdigital Subject Headings	https://gitlab.com/fid-bau/terminologie/fid-baudigital-faecherklassifikation	This subject heading system has beeen developed for use in FID BAUdigital and its future web services. It covers scientific fields of Civil Engineering, Architecture and Urban Studies with a special section on digitization. This subject classification has been mapped to several other classification systems. The latest version of the subject classification including these mappings is available at https://gitlab.com/fid-bau/terminologie/fid-baudigital-faecherklassifikation/-/raw/main/Subject_Headings_all_mappings.owl.		004d64e9-a7ab-4a73-b117-0c6fc6c76d81		https://purl.org/fidbaudigital/subjects#$1				False																								bdsubj								
fideo	Food Interactions with Drugs Evidence Ontology	https://gitub.u-bordeaux.fr/erias/fideo	Food-Drug interactions automatically extracted from scientific literature	^\d+$	00000021	georgeta.bordea@u-bordeaux.fr	http://purl.obolibrary.org/obo/FIDEO_$1				False	FIDEO				FIDEO											fideo	fideo	FIDEO										Q111854958				
fiesta.iot	FIESTA-IoT Ontology	https://github.com/fiesta-iot/ontology	The  FIESTA-IoT ontology takes inspiration from the well-known Noy et al. methodology  for reusing and interconnecting existing ontologies. To build the ontology, we leverage a number of core concepts from various mainstream ontologies and taxonomies, such as Semantic Sensor Network (SSN), M3-lite (a lite version of M3 ontology), WGS84, IoT-lite, Time, and DUL ontology.				http://purl.org/iot/ontology/fiesta-iot#$1				False													fiesta-iot											fiestaiot								
findex.bau	FINDEX Bau as a SKOS Thesaurus - Facetted Indexing System for Civil Engineering	https://gitlab.com/fid-bau/terminologie	SKOS Model of FINDEX Bau by Fraunhofer-Informationszentrum Raum und Bau IRB		B10000000000_3		https://terminology.fraunhofer.de/voc/bau#$1				False																								bau								
findex.raum	FINDEX Raum	https://terminology.fraunhofer.de/findex-thesauri	SKOS-Modellierung des Thesaurus FINDEX Raum des Fraunhofer-Informationszentrums Raum und Bau IRB		R00000000000_3		https://terminology.fraunhofer.de/voc/raum#$1				False																								raum								
fishbase.species	FishBase	http://fishbase.org	Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years.	^\d+$	6472		https://www.fishbase.ca/summary/$1			fishbase	False												nbdc00270										r3d100010912					P938					
fivestars	Five Stars of Online Research Articles Ontology	http://www.sparontologies.net/ontologies/fivestars	An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata.		hasOpenAccessRating	silvio.peroni@unibo.it					False																																
fix	Physico-chemical methods and properties	https://www.ebi.ac.uk/chebi/	An ontology of physico-chemical methods and properties.	^\d{7}$	0000390	amalik@ebi.ac.uk	http://purl.obolibrary.org/obo/FIX_$1				True	FIX			FIX	FIX											fix	fix	FIX			fix			fix				Q114677850				
flopo	Flora Phenotype Ontology	https://github.com/flora-phenotype-ontology/flopoontology	Traits and phenotypes of flowering plants occurring in digitized Floras	^\d{7}$	0005250	robert.hoehndorf@kaust.edu.sa	http://purl.obolibrary.org/obo/FLOPO_$1				False	FLOPO	FLOPO		FLOPO	FLOPO											flopo	flopo	FLOPO						flopo				Q81661625				
flowrepository	FlowRepository	http://flowrepository.org/	FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.	^FR\-FCM\-\w{4}$	FR-FCM-ZYGW	rbrinkman@bccrc.ca	http://flowrepository.org/id/$1				False												nbdc01698		flowrepository	flowrepository							r3d100011280										
flu	Influenza Ontology	http://purl.obolibrary.org/obo/flu/	Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology.  Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)	^\d{7}$	0000404	burkesquires@gmail.com	http://purl.obolibrary.org/obo/FLU_$1				True	FLU			FLU	FLU											flu																
flybase	FlyBase Gene	https://bioentity.link/	FlyBase is the database of the Drosophila Genome Projects and of associated literature.	^FB\w{2}\d{7}$	FBgn0011293	vjenkins@morgan.harvard.edu	https://flybase.org/reports/$1	https://w3id.org/biopragmatics/resources/flybase/flybase.owl	https://w3id.org/biopragmatics/resources/flybase/flybase.obo	FB|FlyBase	False				FlyBase		FlyBase				1089		nbdc00064		fb	fb				460		flybase	r3d100010591	FlyBase			DB-0026	P3852					
flybrain.ndb	FlyBrain Neuron Database	https://flybrain-ndb.virtualflybrain.org	A database of fly neurons and pathways with an associated 3D viewer.	^\d+$	10531		https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html				False												nbdc01446																				
flymine.chromosome	FlyMine Chromosome Band	http://www.flymine.org/	FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge.		1047874		https://www.flymine.org/flymine/report/ChromosomeBand/$1				False																					flymine											
fma	Foundational Model of Anatomy	http://si.washington.edu/projects/fma	The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.	^\d+$	63189	mejino@u.washington.edu	https://www.ebi.ac.uk/ols4/ontologies/fma/terms?obo_id=FMA:$1			FMAID|FMA_RETIRED	True	FMA		571	FMA	FMA					1182	2.16.840.1.113883.6.119	nbdc00273		fma	fma	fma	fma	FMA			fma						P1402	Q1406710				
foaf	Friend of a Friend	http://xmlns.com/foaf/spec/	FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world.		familyName	rafael.goncalves@stanford.edu	http://xmlns.com/foaf/0.1/$1				False	foaf			foaf	FOAF								foaf																foaf			
fobi	Food-Biomarker Ontology	https://github.com/pcastellanoescuder/FoodBiomarkerOntology	FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data	^\d{4,6}$	030719	polcaes@gmail.com	http://purl.obolibrary.org/obo/FOBI_$1				False	FOBI	FOBI			FOBI											fobi	fobi	FOBI										Q113012660				
foodb.compound	FooDB compound	https://foodb.ca/	FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.	^FDB\d+$	FDB002100		http://foodb.ca/compounds/$1			foodb	False				FOODB.COMPOUND										foodb.compound	foodb.compound							r3d100012152					P8117					
foodb.food	FooDB Food	https://foodb.ca/foods	Foods in FooDB	^FOOD\d+$	FOOD00020		https://foodb.ca/foods/$1				False																																
foodex2	Food Classification and Description System (from FSA Food Type identifiers)	https://data.food.gov.uk/codes/_foodtype	Food Type identifiers, supporting codes and vocabularies based on the EFSA FoodEx2 (https://www.efsa.europa.eu/en/data/data-standardisation) that are being tested in the development of the FSA's code and data standards repository. These codes may be used within FSA data.		A0TMC	data@food.gov.uk	http://data.food.gov.uk/codes/foodtype/id/$1				False		FOODEX2																														
foodon	The Food Ontology	https://foodon.org/	FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.	^[0-9]{8}$	03307879	damion_dooley@sfu.ca	http://purl.obolibrary.org/obo/FOODON_$1		http://purl.obolibrary.org/obo/foodon.obo		False	FOODON	FOODON		FOODON	FOODON									foodon	foodon	foodon	foodon	FOODON										Q55118395				
fossilworks.journal	Fossilworks Journal	http://fossilworks.org	Identifier for a journal article in the fossilworks website	^\d+$	61467		http://fossilworks.org/?a=referenceInfo&reference_no=$1				False																											P7720					
fossilworks.taxon	Fossilworks Taxon	http://www.fossilworks.org	Identifier for an animal, plant, or microorganism from the fossilworks website	^[1-9]\d{0,5}$	40565		http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1				False																											P842					
fovt	FuTRES Ontology of Vertebrate Traits	https://github.com/futres/fovt	These are the terms that are improted for FOVT to describe vertebrate traits.	^\d{7}$	0000009	meghan.balk@gmail.com	http://purl.obolibrary.org/obo/FOVT_$1				False	FOVT				FOVT				FOVT							fovt	fovt	FOVT										Q113012661				
fplx	FamPlex	https://sorgerlab.github.io/famplex/	FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.	^[a-zA-Z0-9][A-Za-z0-9_]+$	GPIb_IX_V	benjamin_gyori@hms.harvard.edu	https://sorgerlab.github.io/famplex/$1			famplex	False	FPLX			FPLX	FPLX									fplx	fplx																	
fr	FAIR* Reviews Ontology	http://www.sparontologies.net/ontologies/fr	An ontology that enables the description of reviews of scientific articles and other scholarly resources.		ReviewVersion	silvio.peroni@unibo.it					False																																
frapo	Funding, Research Administration and Projects Ontology	http://www.sparontologies.net/ontologies/frapo	An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc.		Grant	silvio.peroni@unibo.it	http://purl.org/cerif/frapo/$1				False	FRAPO												frapo																			
frbr	Functional Requirements for Bibliographic Records	http://www.sparontologies.net/ontologies/frbr	The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO.		Expression	silvio.peroni@unibo.it	http://purl.org/vocab/frbr/core#$1				False													frbr																frbr			
frbrer	Functional Requirements for Bibliographic Records Entity-Relationship Model	https://www.iflastandards.info/fr/frbr/frbrer	This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)		1001		http://iflastandards.info/ns/fr/frbr/frbrer/$1				False													frbrer																			
fsnp	F-SNP	http://compbio.cs.queensu.ca/F-SNP/	The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.	^rs\d+$	rs17852708		http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$1				True				FSNP										fsnp	fsnp						fsnp											
ftonto	Fischertechnik Ontology	https://wi2.pages.gitlab.rlp.net/iot-lab/ftonto-web-doku/	The FTOnto enables reseachers to sematically describe a physical fischertechnik factory simulation environment. This is archieved by aligning concepts from MASON and SOSA with own concepts. Furthermore the FTOnto can capture knowledge about semantic web services which are used to interact between the service-layer and the cyber-physical layer in a cyber-physical production system. This includes precondition which have to be met before a webservice can be performed, postconditions which check if the webservice execution was performed successfully and effects which describe the changed state of the domain after performing a service. [from homepage]		ADXL345_Pi_1_AccSensor_1_Result_2019-02-26_14_53_54.97		http://iot.uni-trier.de/FTOnto#$1				False																								ftonto								
ftt	Feature Type Thesaurus	https://apps.usgs.gov/thesaurus/thesaurus-full.php?thcode=3	Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific.	^\d+$	273		https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1				False																																
funcbase.fly	FuncBase Fly	http://func.mshri.on.ca/fly	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.	^\d+$	10194		http://func.mshri.on.ca/fly/genes/list_functional_scores/$1				False				FUNCBASE.FLY										funcbase.fly	funcbase.fly																	
funcbase.human	FuncBase Human	http://func.mshri.on.ca/human/	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.	^\d+$	119514		http://func.mshri.on.ca/human/genes/list_functional_scores/$1				False				FUNCBASE.HUMAN										funcbase.human	funcbase.human																	
funcbase.mouse	FuncBase Mouse	http://func.mshri.on.ca/mouse/	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.	^\d+$	1351341		http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1				False				FUNCBASE.MOUSE										funcbase.mouse	funcbase.mouse																	
funcbase.yeast	FuncBase Yeast	http://func.mshri.on.ca/yeast	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.	^\d+$	2701		http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1				False				FUNCBASE.YEAST										funcbase.yeast	funcbase.yeast																	
funderregistry	FunderRegistry	https://www.crossref.org/	The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world.	^\d+$	100000001		http://data.crossref.org/fundingdata/funder/10.13039/$1			FundRef|crossref.funder	False														funderregistry																		
funggrowth	Fungal Growth Database	https://www.fung-growth.org	Identifiers represent experimental growth profiles documenting fungal species' ability to utilize specific carbon sources (plant biomass components, polysaccharides, and monosaccharides) in the FUNG-GROWTH database, which provides phenotypic data to support functional genome annotation and comparative analysis of carbohydrate metabolism across fungal species.	^\d+$	86	v.robert@wi.knaw.nl	https://www.fung-growth.org/page/Display%20page%20FG/$1				False																																
fungidb	FungiDB	https://fungidb.org/fungidb	FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.	^[A-Za-z_0-9]+$	CNBG_0001	jason.stajich@ucr.edu	https://fungidb.org/fungidb/app/record/gene/$1				False				FUNGIDB										fungidb	fungidb							r3d100011906										
fungorum	Index Fungorum	http://www.indexfungorum.org	identifier for a fungus taxon in Index Fungorum	^[1-9]\d{0,5}$	154022		http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1				False																											P1391					
fyeco	Fission Yeast Experimental Conditions Ontology	https://github.com/pombase/fypo	PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase.	^\d{7}$	0000003	vw253@cam.ac.uk					False																																
fyler	Fyler	https://www.elsevier.com/books/nadas-pediatric-cardiology/9781416023906	A hierarchical classification of congenital heart disease	^\d+$	4447						False																																
fypo	Fission Yeast Phenotype Ontology	https://github.com/pombase/fypo	A formal ontology of phenotypes observed in fission yeast.	^\d{7}$	0001707	vw253@cam.ac.uk	http://purl.obolibrary.org/obo/FYPO_$1		http://purl.obolibrary.org/obo/fypo.obo		False	FYPO			FYPO	FYPO											fypo	fypo	FYPO										Q55118393				
ga4ghdos	Data Object Service	http://github.com/ga4gh/data-object-service-schemas	Assists in resolving data across cloud resources.	^[a-zA-Z0-9\-:#/\.]+$	dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d		https://dataguids.org/ga4gh/dos/v1/dataobjects/$1				False				GA4GHDOS										ga4ghdos	ga4ghdos																	
gabi	Network of Different Plant Genomic Research Projects	http://www.gabipd.org/	GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.	^\w+$	2679240	birgit.kersten@thuenen.de	http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject				True				GABI										gabi	gabi						gabi											
gaidet	Generative Artificial Intelligence Delegation Taxonomy	https://github.com/panbibliotekar/gaidet-declaration	The Generative Artificial Intelligence Delegation Taxonomy (GAIDeT) assigns identifiers to contributor roles as an extension to the Contributor Roles Taxonomy (CRediT) to support promoting transparency and accountability in academic publishing when AI contribtors are involved in research. It is operationalized in the [GAIDeT Declaration Generator](https://panbibliotekar.github.io/gaidet-declaration/), an interactive tool for researchers to disclose the delegation of tasks to generative AI (GAI) tools in accordance with the GAIDeT taxonomy.	^\d{7}$	0000001	serhii.nazarovets@gmail.com	https://w3id.org/gaidet/$1	https://w3id.org/gaidet/gaidet.owl			False																																
gainesville.core	Gainesville Core Ontology	http://ontologies.makolab.com/gc06/gc.html	Describes typical Computational Chemistry experiments, including Molecular Publications, Molecular Systems, Molecular Calculations		Aromatic		http://purl.org/gc/$1	http://ontologies.makolab.com/gc06/gc.owl			False																								gc								
galen	GALEN	https://www.opengalen.org	A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic.		MagnitudeValueType	j@deltaflow.com	http://www.co-ode.org/ontologies/galen#$1				True	GALEN				GALEN																											
gallont	Plant Gall Ontology	https://adeans.github.io/gallont/	Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls.	^\d{7}$	0000001	adeans@psu.edu	http://purl.obolibrary.org/obo/GALLONT_$1				False	GALLONT	GALLONT			GALLONT											gallont	gallont	GALLONT														
gard	Genetic and Rare Diseases Information Center	https://rarediseases.info.nih.gov/diseases	Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease.	^\d+$	6038	eric.sid@nih.gov	https://rarediseases.info.nih.gov/diseases/$1/index	https://w3id.org/biopragmatics/resources/gard/gard.owl	https://w3id.org/biopragmatics/resources/gard/gard.obo	GARD|Genetic and Rare Diseases Information Center	False																											P4317					
gateway	Health Data Research Innovation Gateway	https://www.hdruk.ac.uk	The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.	^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$	fd8d0743-344a-4758-bb97-f8ad84a37357		https://web.www.healthdatagateway.org/dataset/$1				False														gateway																		
gaz	Gazetteer	http://environmentontology.github.io/gaz/	A gazetteer constructed on ontological principles. The countries are actively maintained.	^\d{8}$	00620027	lschriml@som.umaryland.edu	http://purl.obolibrary.org/obo/GAZ_$1		http://purl.obolibrary.org/obo/gaz.obo		False	GAZ			GAZ	GAZ											gaz	gaz	GAZ									P6778	Q81661634				
gbif	Global Biodiversity Information Facility	https://www.gbif.org/species	"Database of living organisms, taxonomic. 
 The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."	^\d+$	4238	timrobertson100@gmail.com	https://www.gbif.org/species/$1				False												nbdc00069										r3d100000039					P846					
gcst	GWAS Catalog	https://www.ebi.ac.uk	The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.	^GCST\d{6}\d*$	GCST000035		https://www.ebi.ac.uk/gwas/studies/$1				False														gcst	gcst																	
gdc	Genomic Data Commons Data Portal	https://gdc.cancer.gov	The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.	^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$	ae8c77fe-e6c8-44d5-8265-4a38c637bbef		https://portal.gdc.cancer.gov/cases/$1				False				GDC										gdc	gdc																	
gdo	Graphic Descriptor Ontology	https://gdo.endlessforms.info	The Graphic Descriptor Ontology (GDO) is intended for use in describing graphics that represent the form of objects. It uses the language of visual communication, illustration, and technical drawing. The GDO is rooted in the Basic Formal Ontology (BFO) and uses several classes from the Information Entity Ontology of the Common Core Ontologies as a mid-level ontology. [from https://gdo.endlessforms.info/about]		0000016	mclarkson@uky.edu	https://gdo.endlessforms.info/view/classes?uuid=GDO_$1	https://github.com/endlessforms-info/GDO-GDOA/raw/refs/heads/main/gdoa.owl			False																																
gdsc	Genomics of Drug Sensitivity in Cancer	https://www.cancerrxgene.org	The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.	^[0-9]+$	1242		https://www.cancerrxgene.org/translation/Drug/$1				False						GDSC								gdsc	gdsc																	
gear	Gene Expression Analysis Resource	https://umgear.org	The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains.	^[dp]\.[a-z0-9]{8}$	d.a59037e8	jorvis@gmail.com	https://umgear.org/p?id=$1				False																																
gecko	Genomics Cohorts Knowledge Ontology	https://github.com/IHCC-cohorts/GECKO	An ontology to represent genomics cohort attributes.	^\d{7}$	0000044	rbca.jackson@gmail.com	http://purl.obolibrary.org/obo/GECKO_$1				False	GECKO				GECKO											gecko	gecko	GECKO										Q113012662				
gemet.concept	General Multilingual Environmental Thesaurus Concept	https://www.eionet.europa.eu/gemet/en/themes/	The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts.	^\d+$	627	helpdesk@eionet.europa.eu	https://www.eionet.europa.eu/gemet/en/concept/$1				False		GEMET	16																					gemet				Q1485161				
gemet.group	General Multilingual Environmental Thesaurus Group	https://www.eionet.europa.eu/gemet/en/groups/	Groups listed in GEMET	^\d+$	893		https://www.eionet.europa.eu/gemet/en/group/$1				False																																
gemet.relation	General Multilingual Environmental Thesaurus Relation	https://www.eionet.europa.eu/gemet/en	Relations in GEMET	^\d+$	6237		https://www.eionet.europa.eu/gemet/en/relations/$1				False																																
gemet.theme	General Multilingual Environmental Thesaurus Theme	https://www.eionet.europa.eu/gemet/en/themes	Themes listed in GEMET	^\d+$	4		https://www.eionet.europa.eu/gemet/en/theme/$1				False																																
genatlas	Genatlas	http://genatlas.medecine.univ-paris5.fr/	GenAtlas is a database containing information on human genes, markers and phenotypes.	^\w+$	HBB		http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1				False				GENATLAS								nbdc00275		genatlas	genatlas						genatlas					DB-0027						
genbank	GenBank	https://www.ncbi.nlm.nih.gov/genbank/	GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).		U49845	nawrocke@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/nucleotide/$1				False				GenBank			000304			2292		nbdc00276									genbank	r3d100010528				DB-0028						
genbase	GenBase	https://ngdc.cncb.ac.cn/genbase/?lang=en	GenBase is a genetic sequence database that accepts user submissions (mRNA, genomic DNAs, ncRNA, or small genomes such as organelles, viruses, plasmids, phages from any organism) and integrates data from INSDC.		C_AA001108.1	zhaoxuetong@big.ac.cn	https://ngdc.cncb.ac.cn/genbase/search/gb/$1				False																						r3d100014353										
gendis	Genomic Distribution of structural Superfamilies	http://caps.ncbs.res.in/gendis/home.html	Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases.		46946		http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$1				True																					gendis											
genecards.gene	GeneCards Gene	http://www.genecards.org/	The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.	^[A-Za-z-0-9_]+(\@)?$	ABL1	marilyn.safran@weizmann.ac.il	https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1			genecards	False				GENECARDS								nbdc00242		genecards	genecards						genecards	r3d100012015				DB-0030						
genecards.geneannot	GeneAnnot: Microarray Gene Annotation	http://genecards.weizmann.ac.il/geneannot/	GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match.		GSTA1						False																					geneannot											
genecards.geneloc	Gene Location	http://genecards.weizmann.ac.il/geneloc/	GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources		17503		http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$1				False																					geneloc											
genecards.genenote	Gene Normal Tissue Expression	http://genecards.weizmann.ac.il/genenote/	GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E.		GC06M052656		http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$1&data_type=norm2&results=yes				False																					genenote											
genedb	GeneDB	https://www.genedb.org/	"GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the ""Pathogen Genomics"" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed."	^[\w\d\.-]*$	LinJ.20.0070		https://www.genedb.org/gene/$1				True				GENEDB						1035		nbdc00469		genedb	genedb						genedb	r3d100010626					P3382					
genefarm	GeneFarm	http://urgi.versailles.inra.fr/Genefarm/	GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.	^\d+$	4892	sebastien.aubourg@inrae.fr	https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1				True				GENEFARM										genefarm	genefarm						genefarm											
genepio	Genomic Epidemiology Ontology	http://genepio.org/	The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.	^\d{7}$	0001885	damion_dooley@sfu.ca	http://purl.obolibrary.org/obo/GENEPIO_$1				False	GENEPIO			GENEPIO	GENEPIO											genepio	genepio	GENEPIO										Q55118402				
genetree	GeneTree	http://www.ensembl.org/	Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.	^ENSGT\d+$	ENSGT00550000074763	flicek@ebi.ac.uk	http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1				False				GENETREE										genetree	genetree						genetree					DB-0162						
genewiki	Gene Wiki	http://en.wikipedia.org/wiki/Gene_Wiki	The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.	^\d+$	1017	asu@scripps.edu	http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1				False				GENEWIKI								nbdc00834		genewiki	genewiki																ncbigene	
geno	Genotype Ontology	https://github.com/monarch-initiative/GENO-ontology/	"GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities.  At present many parts of the model are exploratory and set to undergo refactoring.  In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc).  Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. 

Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"	^\d{7}$	0000632	mhb120@gmail.com	http://purl.obolibrary.org/obo/GENO_$1		https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo		False	GENO			GENO	GENO											geno	geno	GENO										Q81661639				
genpept	GenPept	https://www.ncbi.nlm.nih.gov/protein	The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.	^\w{3}\d{5}(\.\d+)?$	CAA71118.1		https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept				False				GENPEPT										genpept	genpept																	
genprop	Genome Properties	https://www.ebi.ac.uk/interpro/genomeproperties/	Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.	^GenProp\d+$	GenProp0699		https://www.ebi.ac.uk/interpro/genomeproperties/#$1				False				GENPROP										genprop	genprop						jcvi.genprop											
geo	NCBI Gene Expression Omnibus	https://www.ncbi.nlm.nih.gov/geo/	The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.	^G(PL|SM|SE|DS)\d+$	GDS1234	barrett@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1				False						GEO				1147		nbdc00080		geo	geo						geo	r3d100010283										
geogeo	Geographical Entity Ontology	https://github.com/ufbmi/geographical-entity-ontology/wiki	"An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction.  We thus distinguish and assign different identifiers to the US in ""The US declared war on Germany"" vs. the US in ""The plane entered US airspace""."	^\d{9}$	000000021	hoganwr@gmail.com	http://purl.obolibrary.org/obo/GEO_$1				False	GEO			GEO	GEO									geogeo		geo	geo	GEO										Q81661641				
geonames	GeoNames	https://www.geonames.org	The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge.	^\d+$	3532759	marc@geonames.org	https://www.geonames.org/$1	https://w3id.org/biopragmatics/resources/geonames/geonames.owl	https://w3id.org/biopragmatics/resources/geonames/geonames.obo	Geomames|Geonamaes	False																						r3d100010245										
geonames.feature	GeoNames Feature Code	https://www.geonames.org/export/codes.html	All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes.		ADM1	marc@geonames.org	https://www.geonames.org/recent-changes/featurecode/$1/	https://w3id.org/biopragmatics/resources/geonames.feature/geonames.feature.owl	https://w3id.org/biopragmatics/resources/geonames.feature/geonames.feature.obo		False																																
geonames.ontology	GeoNames Ontology	https://www.geonames.org/ontology/documentation.html	An ontology used to enable annotating geospatial semantic information to entities in GeoNames		parentFeature						False																													gn			
geosparql	GeoSPARQL	https://opengeospatial.github.io/ogc-geosparql/geosparql11/index.html	The OGC GeoSPARQL standard supports representing and querying geospatial data on the Semantic Web. GeoSPARQL defines a vocabulary for representing geospatial data in RDF, and it defines an extension to the SPARQL query language for processing geospatial data. In addition, GeoSPARQL is designed to accommodate systems based on qualitative spatial reasoning and systems based on quantitative spatial computations.		hasDefaultGeometry	kdurante@stanford.edu	http://www.opengis.net/ont/geosparql#$1				False	GEOSPARQL				GEOSPARQL																			geo					geo			
geosparql.function	GeoSPARQL Function	https://opengeospatial.github.io/ogc-geosparql/geosparql10/servicedescription_all_functions.html	Functions for GeoSPARQL		sfEquals						False																													geof			
geosparql.rule	GeoSPARQL Rule	https://opengeospatial.github.io/ogc-geosparql/geosparql11/rules.html	Rules for GeoSPARQL		rcc						False																													geor			
gesah	GESAH Graphic Arts Ontology	https://sah.tib.eu/	The GESAH Graphic Arts Ontology is designed for the inventory, classification and structured description of works on paper.		applies_to		http://ontology.tib.eu/gesah/$1				False																								gesah								
gesis.kategorienschemawahlstudien	Category Scheme Election Studies	https://vocabularies.cessda.eu/vocabulary/KategorienschemaWahlstudien	The Category Scheme Election Studies provides the ability to categorize election studies at the question and/or variable level.		01		https://vocabularies.cessda.eu/vocabulary/KategorienschemaWahlstudien?lang=en#code_$1				False																																
gesis.rexconcepts	Central concepts of R|EX research	https://vocabularies.cessda.eu/vocabulary/rexconcepts	This CV, developed within the framework of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the central concepts and theoretical approaches in research on racism and right-wing extremism. The compilation is based on a systematic evaluation of the relevant national and international empirical research literature. The CV equally takes into account the different thematic (racism, right-wing extremism, discrimination) as well as methodological (qualitative research, standardised surveys, data from social media and messaging services) research strands.		33		https://vocabularies.cessda.eu/vocabulary/rexconcepts?lang=en#code_$1				False																																
gesis.rexdatatype	Data types in R|EX research	https://vocabularies.cessda.eu/vocabulary/rexdatatype	This CV, developed as part of the DP-R|EX joint project, involving the partner institutions DeZIM, Qualiservice and GESIS, maps the data types relevant to the research field. The CV includes data types that can result from a variety of different collection methods. These include, for example, standardised or unstandardised surveys, individual or repeated observations, as well as process-produced or user-generated types of data generation. The data types can be subject-, event-, space- or time-related and refer to the individual or aggregate level.		01a		https://vocabularies.cessda.eu/vocabulary/rexdatatype?lang=en#code_$1				False																																
gesis.rexgroups	Diversification criteria of R|EX research	https://vocabularies.cessda.eu/vocabulary/rexgroups	This CV, developed within the framework of the DP-R|EX joint project,  involving the partner institutions DeZIM, Qualiservice and GESIS, maps the dimensions of discrimination and racialised characteristics relevant to the research area. The compilation is based on a systematic evaluation of the relevant national and international empirical research literature. These include self-attributed characteristics as well as anticipated attributions by others. The characteristics do not necessarily correspond to the studied units in the data set, but can also be the subject of studied concepts or theories in the surveys, such as on specific prejudices and attitudes.		v1		https://vocabularies.cessda.eu/vocabulary/rexgroups?lang=en#code_$1				False																																
gesis.variables-relations	Variables relations for Social Sciences research data	https://vocabularies.cessda.eu/vocabulary/Variables-Relations	As the variable is one of the most relevant entities to enhance data reuse in the Social Sciences, we provide a framework design to better semantics the variables' relations descriptions. These explicit relations between variables enable comparability and facilitate harmonization across waves. We provide a brief textual identification of the relation type, supported by a controlled vocabulary (CV) and an extended description of the relationship. These relations within variables include but are not limited to different versions, derived formats in new waves, new labels and name wording, and alternative response schema through questionnaires and surveys. For instance, a given variable label is changed from one wave to another, even though its concept remains the same. Their values also are subject to change, such as new cardinalities settings, their categorization, or response scheme and scale measurement. They change based on different conditions, e.g., values are updated by any constraints or modified to comply with the study evolution requirements or a new sociological approach. In the Social Sciences, Economics, and Behaviour Sciences, which investigate, for instance, the social structure of the population, political attitudes of voters and candidates, opinions on family, work, religion, politics and society or competencies of adults, those topics are highly subject to change to fit the empirical reality in a constantly changing world. Thus, we propose widening relations descriptions for Social Sciences variables within datasets beginning from the BasedOnObjectType DDI as a first approach.		01		https://vocabularies.cessda.eu/vocabulary/Variables-Relations?lang=en#code_$1				False																																
gesiskg	GESIS Knowledge Graph Schema	https://data.gesis.org/gesiskg	Predicates that are used to construct the GESIS Knowledge Graph, a bibliometrics KG.		linkContext		https://data.gesis.org/gesiskg/schema/$1				False																																
getty.att	Art and Architecture Thesaurus	http://vocab.getty.edu/ontology	"The AAT includes generic terms, and associated dates, relationships, and other rich information about concepts related to or required to catalog, discover, and retrieve information about art, architecture, and other visual cultural heritage, including related disciplines such as archaeology and conservation. Visual works include not only visual cultural works classified as ""art"" according to Western aesthetics, but also utilitarian and ceremonial works. Terminology may be used for work types, roles, materials, styles, cultures, techniques, subject, etc., so long as terms are within the defined scope of AAT. [from https://www.getty.edu/research/tools/vocabularies/aat/aat_faq.html]"		300011154		http://vocab.getty.edu/aat/$1				False																																
getty.cona	Cultural Objects Names Authority	https://www.getty.edu/research/tools/vocabularies/cona/	CONA compiles titles, attributions, depicted subjects, and other metadata about works of art, architecture, and cultural heritage, both extant and historical, physical and conceptual. Metadata is gathered and linked from museum collections, special collections, archives, libraries, scholarly research, and other sources. CONA is linked to the AAT, TGN, ULAN, and the IA (Iconography Authority). Through rich metadata and links, CONA may provide a powerful conduit for research and discovery for digital art history. [from homepage]		700054086		http://vocab.getty.edu/page/cona/$1				False																																
getty.gvp	Getty Vocabulary Program ontology	http://vocab.getty.edu/ontology	The GVP Ontology defines classes, properties and values (skos:Concepts) used in GVP LOD. As of version 3.0, it is complete regarding AAT, TGN and ULAN, and will be extended in time with more elements needed for other GVP vocabularies (CONA).		prefLabelGVP		http://vocab.getty.edu/ontology#$1				False																																
getty.ia	Getty Iconography Authority	https://www.getty.edu/cona/CONAIconographyHierarchy.aspx?iconid=901000000	The Getty Iconography Authority ™ (IA), Cultural Objects Name Authority ® (CONA), the Union List of Artist Names ® (ULAN), the Art & Architecture Thesaurus ® (AAT), the Getty Thesaurus of Geographic Names ® (TGN) are structured resources that can be used to improve access to information about art, architecture, and other material culture. The Vocabularies are not simply 'value vocabularies,' but knowledge bases. Through rich metadata and links, the Getty Vocabularies provide powerful conduits for knowledge creation, complex research, and discovery for digital art history and related disciplines. [from https://www.getty.edu/research/tools/vocabularies/cona/about.html#purpose_ia]		901001034		http://vocab.getty.edu/page/ia/$1				False																																
getty.tgn	Getty Thesaurus of Geographic Names	https://www.getty.edu/research/tools/vocabularies/tgn/	The Thesaurus of Geographic Names (TGN) is a terminology that focuses on places relevant to art, architecture, and related disciplines, recording names, relationships, place types, dates, notes, and coordinates for current and historical cities, nations, empires, archaeological sites, lost settlements, and physical features. The TGN is one of 5 Getty Vocabularies intended to provide terminology and other information about the objects, artists, concepts, and places important to various disciplines that specialize in art, architecture, and other material culture.	^\d+$	1023371		http://vocab.getty.edu/tgn/$1			tgn	False			109																									Q1520117				
getty.ulan	Union List of Artist Names	http://vocab.getty.edu/ulan/	The Getty Thesaurus of Geographic Names (TGN) is a structured vocabulary, including names, descriptions, and other metadata for extant and historical cities, empires, archaeological sites, and physical features important to research of art and architecture. TGN may be linked to GIS (Geographical Information System), maps, and other geographic resources. [from https://collectionstrust.org.uk/resource/thesaurus-of-geographic-names-tgn-getty/]		500202846		http://vocab.getty.edu/ulan/$1				False																																
gexo	Gene Expression Ontology	http://www.semantic-systems-biology.org/apo	Gene Expression Ontology			kuiper@bio.ntnu.no		https://www.bio.ntnu.no/ontology/GeXO/gexo.owl	https://www.bio.ntnu.no/ontology/GeXO/gexo.obo		False	GEXO				GEXO												gexo															
gfbio.ets	Ecological Trait-data Standard	https://terminologies.gfbio.org/terms/ets/pages/index.html	The Ecological Trait-data Standard defines terms for the use in datasets containing quantitative and qualitative functional traits.		BiodiversityExploratories		http://terminologies.gfbio.org/terms/ETS/$1				False																								ets								
gfo	General Formal Ontology	https://www.onto-med.de/ontologies/gfo	The General Formal Ontology is a top-level ontology for conceptual modeling, which is being constantly further developed by Onto-Med. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations. Moreover, we are working on an integration with the notion of levels of reality in order to more appropriately capture entities in the material, mental, and social areas.		projects_to	heinrich.herre@imise.uni-leipzig.de	http://www.onto-med.de/ontologies/gfo.owl#$1	http://www.onto-med.de/ontologies/gfo.owl			False	GFO				GFO																			gfo								
ghr	Genetics Home Reference	https://medlineplus.gov/genetics/condition	MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA).		saddan		https://medlineplus.gov/genetics/condition/$1				False																																
giardiadb	GiardiaDB	https://giardiadb.org/giardiadb/	GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	GL50803_102438	oharb@upenn.edu	https://giardiadb.org/giardiadb/app/record/gene/$1				False				GIARDIADB								nbdc01782		giardiadb	giardiadb						giardiadb	r3d100012458										
gist	gist	https://www.semanticarts.com/gist/	gist is a minimalist upper ontology created by Semantic Arts.		Account		https://w3id.org/semanticarts/ns/ontology/gist/$1				False																								gist								
github	GitHub username	https://github.com/	GitHub is an online host of Git source code repositories.	^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$	biopragmatics/bioregistry		https://github.com/$1				False														github								r3d100010375					P2037					
github.issue	GitHub Issue	https://github.com/	An issue in any public repository on GitHub.		biopragmatics/bioregistry/424		https://bioregistry.io/resolve/github/issue/$1				False																																
github.pull	GitHub Pull Request	https://github.com/	A pull request in any public repository on GitHub.		biopragmatics/bioregistry/416		https://bioregistry.io/resolve/github/pull/$1				False																																
gitlab	GitLab	https://gitlab.com/	GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability.	^.*/.*$	morpheus.lab/morpheus		https://gitlab.com/$1				False														gitlab																		
glida.gpcr	GLIDA GPCR	http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/	The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.	^[A-Z-_0-9]+$	ACM1_HUMAN		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1				True				GLIDA.GPCR										glida.gpcr	glida.gpcr																	
glida.ligand	GLIDA Ligand	http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/	The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.	^L\d+$	L000001		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1				True				GLIDA.LIGAND										glida.ligand	glida.ligand																	
glottolog	Glottolog	https://glottolog.org	Comprehensive reference information for the world's languages, especially the lesser known languages. [from homepage]		nort3314		https://glottolog.org/resource/languoid/id/$1				False																																
glycoepitope	GlycoEpitope	https://www.glycoepitope.jp/epitopes/	GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.	^EP\d{4}$	EP0311		https://www.glycoepitope.jp/epitopes/$1				False				GLYCOEPITOPE								nbdc00087		glycoepitope	glycoepitope																	
glycomapsdb	GlycoMapsDB	http://www.glycosciences.de/modeling/glycomapsdb/	A database of GlycoMaps containing 2585 conformational maps.		6819		http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1				False																					glycomapsdb											
glycomedb	GlycomeDB	https://glytoucan.org/	GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.	^\w+$	G77500AY	rr@uga.edu	https://glytoucan.org/Structures/Glycans/$1				False				GLYCOMEDB						2664		nbdc00899		glycomedb	glycomedb						glycomedb	r3d100011527										glytoucan
glyconavi	GlycoNAVI	https://www.noguchi.or.jp/	"GlycoNAVI is a website for carbohydrate research. It consists of the ""GlycoNAVI Database"" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the ""GlycoNAVI tools"" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools."	^GN_[A-Za-z0-9_:]+$	GN_G03681DA	issaku@noguchi.or.jp	https://glyconavi.org/hub/?id=$1				False												nbdc01174		glyconavi																		
glycopost	GlycoPOST	https://glycopost.glycosmos.org	"GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their ""raw/processed"" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."	^GPST[0-9]{6}$	GPST000024		https://glycopost.glycosmos.org/entry/$1				False														glycopost																		
glycosciencesdb	Glycosciences.DB	http://www.glycosciences.de/database/	A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates.	^\d+$	1	thomas@luetteke-online.de	http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1			glycosciences.db	False																																
glytoucan	GlyTouCan	https://glytoucan.org	GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.	^G[0-9]{5}[A-Z]{2}$	G00054MO	rr@uga.edu	https://glytoucan.org/Structures/Glycans/$1			glygen	False				GLYTOUCAN								nbdc02434		glytoucan	glytoucan							r3d100012388			Glytoucan	DB-0254						
gmd	Golm Metabolome Database	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	68513255-fc44-4041-bc4b-4fd2fae7541d	kopka@mpimp-golm.mpg.de	http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx				False				GMD										gmd	gmd							r3d100011046										
gmd.analyte	Golm Metabolome Database Analyte	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	4f0fa9b6-514f-4ff4-98cc-0009bc08eb80		http://gmd.mpimp-golm.mpg.de/Analytes/$1				False				GMD.ANALYTE										gmd.analyte	gmd.analyte																	
gmd.gcms	Golm Metabolome Database GC-MS spectra	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	53d583d8-40c6-40e1-9296-23f821cd77a5		http://gmd.mpimp-golm.mpg.de/Spectrums/$1				False				GMD.GCMS										gmd.gcms	gmd.gcms																	
gmd.profile	Golm Metabolome Database Profile	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	10b38aaf-b977-4950-85b8-f4775f66658d		http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1				False				GMD.PROFILE										gmd.profile	gmd.profile																	
gmd.ref	Golm Metabolome Database Reference Substance	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	8cf84adb-b4db-4807-ac98-0004247c35df		http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1				False				GMD.REF										gmd.ref	gmd.ref																	
gmelin	Gmelin's Handbook of Inorganic Chemistry	https://link.springer.com/bookseries/562	The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s.	^[1-9][0-9]{1,6}$	1466						False										1004																	P1578					
gnd	GND ID	https://lobid.org/	The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners.	^[0-9X\-]+$	117145750		https://lobid.org/gnd/$1				False			430											gnd													P227	Q54506313				
gndo	GND-Ontologie	http://d-nb.info/standards/elementset/gnd#	"GND stands for ""Gemeinsame Normdatei"" (Integrated Authority File) and offers a broad range of elements to describe authorities. The GND originates from the German library community and aims to solve the name ambiguity problem in the library world."		AdministrativeUnit		https://d-nb.info/standards/elementset/gnd#$1				False													gndo											gndo								
gno	Glycan Naming and Subsumption Ontology	https://gnome.glyomics.org/	An ontology for glycans based on GlyTouCan, but organized by subsumption.	^(\d{8}|(\w+\d+\w+))$	10004892	nje5@georgetown.edu	http://purl.obolibrary.org/obo/GNO_$1			gnome	False	GNO				GNO											gno	gno	GNO										Q113012663				
gnomad	Genome Aggregation Database	https://gnomad.broadinstitute.org	The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community (from https://gnomad.broadinstitute.org).		1-55516888-G-GA	hrehm@mgh.harvard.edu	https://gnomad.broadinstitute.org/variant/$1				False												nbdc02561																				
gnpis	GnpIS	https://urgi.versailles.inra.fr/gnpis/	GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.	^[A-Za-z0-9]+$	AY109603	hadi.quesneville@versailles.inra.fr	https://urgi.versailles.inra.fr/gnpis/#result/term=$1				False				GNPIS										gnpis	gnpis							r3d100012647										
gnps.task	Global Natural Products Social Molecular Networking Task	https://gnps.ucsd.edu/	GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS)	^[a-f0-9]+$	4b848c342a4f4abc871bdf8a09a60807	mingxun.wang@cs.ucr.edu	https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=$1				False																																
go	Gene Ontology	http://geneontology.org/	The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.	^\d{7}$	0032571	suzia@stanford.edu	http://purl.obolibrary.org/obo/GO_$1			gobp|gobpid|gocc|goccid|gomf|gomfid	False	GO	GO	572	GO	GO					1176	2.16.840.1.113883.6.128	nbdc00074		go	go	go	go	GO	272		go	r3d100014165		go	Go	DB-0037	P686	Q135085				
go.gpi	Gene Product Information Schema	http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id	This describes the metadata schema for the Gene Product Information (GPI) files in the Gene Ontology, i.e., the local unique identifiers in this identifier space refer to the columns in GPI files.		db-object-id		http://geneontology.org/docs/gene-product-information-gpi-format/#$1				False																																
go.issue	Gene Ontology Issue Tracker	https://github.com/geneontology/go-ontology/issues	An issue on the Gene Ontology GitHub issue tracker	^\d+$	23000		https://github.com/geneontology/go-ontology/issues/$1				False																																
go.model	Gene Ontology Causal Activity Model	https://geneontology.org/go-cam	GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform.		5fce9b7300001250		https://model.geneontology.org/$1				False																																
go.ref	Gene Ontology Database references	http://www.geneontology.org	"The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of ""GO content"" meetings at which substantial changes in the ontologies are discussed and made."	^\d{7}$	0000041		https://geneontology.org/GO_REF/$1				False				GO_REF										go_ref	go.ref																	
go.resource	Gene Ontology Registry	https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml	A database-specific registry supporting curation in the Gene Ontology		CHEBI		https://bioregistry.io/metaregistry/go/$1				False																																
go.rule	Gene Ontology Rules	https://github.com/geneontology/go-site/tree/master/metadata/rules	GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio.	^\d{7}$	0000004		https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md				False																																
goa	Gene Ontology Annotation Database	https://www.ebi.ac.uk/GOA/	The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.	^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$	P12345	r.huntley@ucl.ac.uk	https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1				False				GOA								nbdc00468		goa	goa						goa										uniprot	
goche	GO Chemicals	https://github.com/geneontology/go-ontology	Represent chemical entities having particular CHEBI roles	^\d+$	25512		https://biopragmatics.github.io/providers/goche/$1	https://raw.githubusercontent.com/geneontology/go-ontology/master/src/ontology/imports/chebi_roles.owl		go.chebi|go.chemical|go.chemicals	False																																
goeco	GO Evidence Code	http://geneontology.org/docs/guide-go-evidence-codes/	A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported.		IPI						False																																
gold	Genomes Online Database	https://gold.jgi.doe.gov/	The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.	^[A-Z][a-z][0-9]+$	Gs0000008	tbreddy@lbl.gov	https://gold.jgi.doe.gov/resolver?id=$1				False												nbdc00483		gold			gold				gold	r3d100010808										
gold.genome	GOLD genome	http://www.genomesonline.org/cgi-bin/GOLD/index.cgi	"- DEPRECATION NOTE -
Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.

The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."	^(Gi|Gc)\d+$	Gi07796		http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1				True				GOLD.GENOME										gold.genome	gold.genome																gold	
gold.meta	GOLD metadata	http://www.genomesonline.org/cgi-bin/GOLD/index.cgi	"- DEPRECATION NOTE -
Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. 

The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."	^Gm\d+$	Gm00047		http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1				False				GOLD.META										gold.meta	gold.meta																	gold
goldbook	IUPAC Gold Book Compendium of Chemical Terminology	https://goldbook.iupac.org	"The Compendium is popularly referred to as the ""Gold Book"", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC ""Colour Books"" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.

Terminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry.

The API can be accessed [here](https://goldbook.iupac.org/pages/api)"	^(\wT?)?\d{5}$	G02681	schalk@unf.edu	https://goldbook.iupac.org/terms/view/$1				False			1884																								P4732	Q902163				
google.book	Google Books	https://books.google.com	Search the world's most comprehensive index of full-text books.		qafeQTWIWmcC		https://books.google.com/books?id=$1				False																											P675					
google.patent	Google Patents	https://www.google.com/patents/	Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.	^[A-Z]{2,4}\d+([A-Z])?([0-9])?$	US4145692		https://www.google.com/patents/$1			Patent|patent	False				GOOGLE.PATENT		Patent								google.patent	google.patent																	
google.scholar	Google Scholar Researcher	https://scholar.google.com/	Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites.	^[-_0-9A-Za-z]{12}$	PjrpzUIAAAAJ		https://scholar.google.com/citations?user=$1				False																											P1960					
gorel	GO Relations	http://geneontology.org/docs/ontology-relations/	Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.	^\d{7}$	0002005		http://purl.obolibrary.org/obo/GOREL_$1	ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl			False																																
gpcrdb	G protein-coupled receptor database	http://www.gpcrdb.org/	The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.	^\w+$	RL3R1_HUMAN	david.gloriam@sund.ku.dk	https://gpcrdb.org/protein/$1				False				GPCRDB								nbdc00484		gpcrdb	gpcrdb						gpcrdb					DB-0038						
gpcrnava	GPCR Natural Variants database	http://nava.liacs.nl/	The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Variant, which means any (non-artificial) variant that occurs in humans.		1150		http://nava.liacs.nl/cgi-bin/nava.py?id=$1				False																					gnd											
gpmdb	Global Proteome Machine Database	http://gpmdb.thegpm.org/	The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.	^GPM\d+$	GPM32310002988	rbeavis@thegpm.org	http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1				False				GPMDB										gpmdb	gpmdb																	
gpml	WikiPathways GPML Vocabulary	https://vocabularies.wikipathways.org/gpml	The WikiPatwhays Graphical Pathway Markup Language (GPML) vocabulary.	^[A-Za-z]+$	DataNode	egon.willighagen@gmail.com	http://vocabularies.wikipathways.org/gpml#$1	https://github.com/wikipathways/WpVocabularies/raw/refs/heads/master/docs/gpml.owl		wikipathways.gpml	False	GPML				GPML																											
gr	GoodRelations	http://purl.org/goodrelations	A vocabulary for e-commerce		category		http://purl.org/goodrelations/v1#$1				False	gr												gr																gr			
graingenes.reference	GrainGenes reference	http://wheat.pw.usda.gov	A database for Triticeae and Avena references.		WGS-95-1333		https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1				False																																
graingenes.symbol	GrainGenes symbol	http://wheat.pw.usda.gov	A database for Triticeae and Avena gene symbols.		1-FEH+w3		http://wheat.pw.usda.gov/report?class=gene;name=$1				False																																
gramene.gene	Gramene Gene	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.	^GR\:\d+$	GR:0080039		http://www.gramene.org/db/genes/search_gene?acc=$1			GR_GENE	False				GRAMENE.GENE										gramene.gene	gramene.gene																	
gramene.growthstage	Gramene Growth Stage Ontology	http://www.gramene.org/plant_ontology/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.	^\d{7}$	0007133	po-discuss@plantontology.org	http://www.gramene.org/db/ontology/search?id=GRO:$1			cpga|gro-cpga	True				GRAMENE.GROWTHSTAGE	GRO-CPGA									gro	gramene.growthstage	gro					gramene.po							Q114677888				
gramene.protein	Gramene protein	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.	^\d+$	78073		http://www.gramene.org/db/protein/protein_search?protein_id=$1			GR_PROTEIN	False				GRAMENE.PROTEIN										gramene.protein	gramene.protein																	
gramene.qtl	Gramene QTL	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.	^\w+$	CQG5		http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1			GR_QTL	False				GRAMENE.QTL										gramene.qtl	gramene.qtl																	
gramene.reference	Gramene Reference	http://www.gramene.org	Literature references in Gramene	^\d+$	6200		http://www.gramene.org/db/literature/pub_search?ref_id=$1			gramene.ref	False																																
gramene.taxonomy	Gramene Taxonomy	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.	^\d+$	013681		https://archive.gramene.org/db/ontology/search?id=GR_tax:$1				False				GRAMENE.TAXONOMY										gramene.taxonomy	gramene.taxonomy																	
grassbase	GrassBase	https://www.kew.org/data/grasses-syn/index.htm	GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species.	^(imp|gen)\d{5}$	imp10873		https://www.kew.org/data/grasses-db/www/$1				False																											P1832					
grddl	Gleaning Resource Descriptions from Dialects of Languages	https://www.w3.org/TR/grddl-primer/	GRDDL is a mechanism for Gleaning Resource Descriptions from Dialects of Languages. It is a technique for obtaining RDF data from XML documents and in particular XHTML pages. Authors may explicitly associate documents with transformation algorithms, typically represented in XSLT, using a link element in the head of the document. Alternatively, the information needed to obtain the transformation may be held in an associated metadata profile document or namespace document. Clients reading the document can follow links across the Web using techniques described in the GRDDL specification to discover the appropriate transformations. This document uses a number of examples from the GRDDL Use Cases document to illustrate, in detail, the techniques GRDDL provides for associating documents with appropriate instructions for extracting any embedded data. (from homepage)		transformation		http://www.w3.org/2003/g/data-view#$1				False													grddl																grddl			
greengenes	16S rRNA gene database	http://greengenes.lbl.gov/	A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.	^\d+$	100000	GLAndersen@lbl.gov	http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1				True				GREENGENES								nbdc01824		greengenes	greengenes						greengenes	r3d100010549										
grid	Global Research Identifier Database	https://www.grid.ac/	International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.	^grid\.[0-9]+\.[a-f0-9]{1,2}$	grid.225360.0		https://www.grid.ac/institutes/$1				False				GRID										grid	grid																	
grin.publication	Germplasm Resources Information Network	http://www.ars-grin.gov/	GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections.		159787		http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$1			grin	False																					grin											
grin.taxonomy	GRIN URL	https://npgsweb.ars-grin.gov/gringlobal/taxon/abouttaxonomy	GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.	^\d+$	19333		https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomydetail?id=$1				False				GRIN.TAXONOMY										grin.taxonomy	grin.taxonomy												P1421	Q19576476				
gro	Gene Regulation Ontology	http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html	The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes.		Lipid	vlee@ebi.ac.uk	http://www.bootstrep.eu/ontology/GRO#$1			bootstrep	True	GRO			BOOTSTREP	GRO											bootstrep																
grsdb	G-Rich Sequences Database	http://bioinformatics.ramapo.edu/GRSDB2/	GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.	^\d+$	10142		http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1				True				GRSDB										grsdb	grsdb						grsdb											
gs1	GS1 Web Vocabulary	https://ref.gs1.org/voc/	The initial focus of the GS1 Web Vocabulary is consumer-facing properties for clothing, shoes, food beverage/tobacco and properties common to all products. [from homepage]		AllergenTypeCode-3-AMINOPHENOL						False																													gs1			
gsfa	General Standard for Food Additives Online Database	http://www.fao.org/gsfaonline	"The ""Codex General Standard for Food Additives"" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."	^\d+$	174		http://www.fao.org/gsfaonline/additives/details.html?id=$1			FAO/WHO_standards	False																																
gsso	Gender, Sex, and Sexual Orientation Ontology	https://gsso.research.cchmc.org/	The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.	^\d{6}$	002368	kronkcj@mail.uc.edu	http://purl.obolibrary.org/obo/GSSO_$1				False	GSSO		20833		GSSO									gsso		gsso	gsso	GSSO										Q97063846				
gtdb	Genome Taxonomy Database	https://gtdb.ecogenomic.org	The Genome Taxonomy Database (GTDB) is an initiative to establish a standardized microbial taxonomy based on genome phylogeny.	^[cdfgops]__\w+\S+$	g__Prochlorococcus_A	donovan.parks@gmail.com	https://gtdb.ecogenomic.org/tree?r=$1	https://w3id.org/biopragmatics/resources/gtdb/gtdb.owl	https://w3id.org/biopragmatics/resources/gtdb/gtdb.obo.gz		False																			190													
gtex	Genotype-Tissue Expression	https://www.gtexportal.org	The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.	^\w.+$	BRIP1		https://www.gtexportal.org/home/gene/$1				False				GTEX										gtex	gtex																	
gtn	Galaxy Training Network	https://training.galaxyproject.org/training-material/	Identifiers in the GTN correspond to training materials in various formats (markdown, slides, video). The users can apply learned concepts directly within the framework via galaxy workflows.	^[A-Z]\d+$	T00148	saskia.hiltemann@rz.uni-freiburg.de	https://gxy.io/GTN:$1				False																																
gtr.condition	Genetic Testing Registry	https://www.ncbi.nlm.nih.gov/gtr/	The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease		AN0097748		https://www.ncbi.nlm.nih.gov/gtr/conditions/$1			gtr|medgen.gtr	False																																
gtr.lab	Genetic Testing Registry Labs	https://www.ncbi.nlm.nih.gov/	The Genetic Testing Registry provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease.	^\d+$	000320401		https://www.ncbi.nlm.nih.gov/gtr/labs/$1				False														gtrl																		
gtr.test	Genetic Testing Registry Tests	https://www.ncbi.nlm.nih.gov/	The Genetic Testing Registry provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease.	^\d+$	000260236		https://www.ncbi.nlm.nih.gov/gtr/tests/$1				False														gtr																		
gudmap	Genitourinary Development Molecular Anatomy Project	http://www.gudmap.org/	The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.	^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$	Q-2958	simon.harding@ed.ac.uk	https://gudmap.org/id/$1				False				GUDMAP										gudmap	gudmap							r3d100012193										
gufo	Unified Foundational Ontology	https://nemo-ufes.github.io/gufo	An _gentle_ implementation of the Unified Foundational Ontology (UFO), which is an upper level ontology like BFO that is concerned with e.g. expressing temporal relationships between events.		Person		http://purl.org/nemo/gufo#$1				False													gufo																			
gwascentral.marker	GWAS Central Marker	https://www.gwascentral.org/markers	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.	^HGVM\d+$	HGVM15354	tb143@leicester.ac.uk	https://www.gwascentral.org/marker/$1				False				GWASCENTRAL.MARKER										gwascentral.marker	gwascentral.marker																	
gwascentral.phenotype	GWAS Central Phenotype	https://www.gwascentral.org/phenotypes	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.	^HGVPM\d+$	HGVPM623	tb143@leicester.ac.uk	https://www.gwascentral.org/phenotype/$1				False				GWASCENTRAL.PHENOTYPE										gwascentral.phenotype	gwascentral.phenotype																	
gwascentral.study	GWAS Central Study	https://www.gwascentral.org/studies	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.	^HGVST\d+$	HGVST1828	tb143@leicester.ac.uk	https://www.gwascentral.org/study/$1				False				GWASCENTRAL.STUDY										gwascentral.study	gwascentral.study						hgvbase											
gxa.expt	GXA Expt	https://www.ebi.ac.uk/gxa/	The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.	^[AEP]-\w{4}-\d+$	E-MTAB-2037		https://www.ebi.ac.uk/gxa/experiments/$1				False				GXA.EXPT										gxa.expt	gxa.expt																	
gxa.gene	GXA Gene	https://www.ebi.ac.uk/gxa/	The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.	^\w+$	AT4G01080		https://www.ebi.ac.uk/gxa/genes/$1				False				GXA.GENE										gxa.gene	gxa.gene																	
habronattus	Habronattus courtship	http://www.mesquiteproject.org/ontology/Habronattus/index.html				peteremidford@yahoo.com	http://purl.obolibrary.org/obo/HABRONATTUS_$1				True				HABRONATTUS												habronattus												Q114677889				
hagr.genage	The Ageing Gene Database	http://genomics.senescence.info/genes/	GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group.		0001	jp@senescence.info	http://genomics.senescence.info/genes/details.php?id=$1				False																					genage											
hagr.gendr	The Dietary Restriction Gene Database	http://genomics.senescence.info/diet/	GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals		2	jp@senescence.info	http://genomics.senescence.info/diet/details.php?id=$1				False																					gendr											
hamap	High-quality Automated and Manual Annotation of microbial Proteomes	https://hamap.expasy.org/	HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.	^MF_\d+$	MF_01400	alan.bridge@isb-sib.ch	https://hamap.expasy.org/unirule/$1				False				HAMAP						2766				hamap	hamap						hamap					DB-0041						
hancestro	Human Ancestry Ontology	https://ebispot.github.io/hancestro/	Human ancestry ontology for the NHGRI GWAS Catalog	^\d{4}$	0290	dwelter.ontologist@gmail.com	http://purl.obolibrary.org/obo/HANCESTRO_$1				False	HANCESTRO				HANCESTRO											hancestro	hancestro	HANCESTRO										Q81661647				
hao	Hymenoptera Anatomy Ontology	http://hymao.org	A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)	^\d{7}$	0000187	diapriid@gmail.com	http://purl.obolibrary.org/obo/HAO_$1				False	HAO			HAO	HAO											hao	hao	HAO										Q81661648				
hao.ref	Hymenoptera Anatomy Reference	http://hymao.org	Literature references in the Hymenoptera Anatomy Ontology Portal	^\d+$	98127	diapriid@gmail.com	http://api.hymao.org/api/ref/$1				False																																
hathitrust	Hathi Trust Digital Library	https://www.hathitrust.org	Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world.	^\d+$	008893080		https://catalog.hathitrust.org/Record/$1				False																																
hba	Human Brain Atlas	https://human.brain-map.org	A controlled vocabulary to support the study of transcription in the human brain	^\d+$	4005		https://purl.brain-bican.org/ontology/hbao/HBA_$1		https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-hba.obo		False																	hba															
hbvar	A Database of Human Hemoglobin Variants and Thalassemias	http://globin.cse.psu.edu/globin/hbvar	This is a relational database of information about hemoglobin variants and mutations that cause thalassemia.		2526		http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1				False																					hbvar											
hc.din	Health Canada Drug Identification Number	https://www.canada.ca/en/health-canada/services/drugs-health-products/drug-products/fact-sheets/drug-identification-number.html	A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada.	^\d{8}$	02069237						False											2.16.840.1.113883.5.1105																					
hc.npn	Health Canada Natural Product Number	http://webprod.hc-sc.gc.ca/nhpid-bdipsn/search-rechercheReq.do?lang=eng	The Licensed Natural Health Products Database contains information about natural health products that have been issued a product licence by Health Canada.	^\d+$	18125		http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=$1				False											2.16.840.1.113883.5.1107																					
hc.trial	Health Canada Clinical Trials Database	https://health-products.canada.ca/ctdb-bdec	Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]	^\d+$	239287		https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1				False																																
hcao	Human Cell Atlas Ontology	https://www.humancellatlas.org	Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.								False																	hcao															
hco	Human Chromosome Ontology	https://dbcls.rois.ac.jp/	The Human Chromosome Ontology (HCO) provides simple and stable URIs for human reference genome versions to semantically identify human chromosomes.	^.+$	MT		http://biohackathon.org/resource/hco#$1				False														hco																		
hcpcs	Healthcare Common Procedure Coding System	https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo	HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers.		G8944	Cynthia.Hake@cms.hhs.gov	http://purl.bioontology.org/ontology/HCPCS/$1				False	HCPCS				HCPCS																											
hcvdb	Hepatitis C Virus Database Project	https://euhcvdb.lyon.inserm.fr/euHCVdb	the European Hepatitis C Virus Database (euHCVdb, euhcvdb.lyon.inserm.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.	^M\d{5}$	M58335		https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1				False				HCVDB										hcvdb	hcvdb						hcv											
hdl	Handle	https://www.handle.net/	Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)	^\d+/.+$	2381/12775		http://hdl.handle.net/$1			handle	False																																
hdr	Homeodomain Research	http://research.nhgri.nih.gov/apps/homeodomain/web/	The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.	^\d+$	63		http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$1				True				HDR										hdr	hdr				307		hdr											
hemonc	HemOnc Terminology	https://hemonc.org/	HemOnc.org is the largest freely available medical wiki of interventions, regimens, and general information relevant to the fields of hematology and oncology.	^\d+$	15543						False																																
hepro	Health Procedure Ontology	https://openlhs.github.io/HEPRO/	HEPRO is an ontology of informational entities and processes related to health procedures and health activities.	^\d{7}$	0000001	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/HEPRO_$1	https://github.com/OpenLHS/HEPRO/raw/main/HEPRO.owl			False																																
hesa	UK Higher Education Statistics Agency	https://www.hesa.ac.uk	An identifier for institutions in the United Kingdom, used in GRID and ROR.	^\d+$	0154						False																																
hgmd	Human Gene Mutation Database	http://www.hgmd.cf.ac.uk/ac/index.php	The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.	^[A-Z_0-9]+$	CALM1		http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1				False				HGMD						3265		nbdc00097		hgmd	hgmd																	
hgnc	HUGO Gene Nomenclature Committee	http://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.	^\d{1,5}$	16793	elspeth@genenames.org	https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1	https://w3id.org/biopragmatics/resources/hgnc/hgnc.owl.gz	https://w3id.org/biopragmatics/resources/hgnc/hgnc.obo		False	HGNC		20688	HGNC	HGNC	HGNC				2298	2.16.840.1.113883.6.281			hgnc	hgnc		hgnc				hgnc				Hgnc	DB-0042	P354					
hgnc.genefamily	HGNC gene family	http://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.	^\d+$	2029	elspeth@genenames.org	https://www.genenames.org/cgi-bin/genefamilies/set/$1			GFAM|HGNC_GROUP|hgnc.family	False				HGNC.GENEFAMILY										hgnc.genefamily	hgnc.genefamily																	hgnc.genegroup
hgnc.genegroup	HGNC Gene Group	https://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.	^\d+$	141	elspeth@genenames.org	https://www.genenames.org/data/genegroup/#!/group/$1	https://w3id.org/biopragmatics/resources/hgnc.genegroup/hgnc.genegroup.owl	https://w3id.org/biopragmatics/resources/hgnc.genegroup/hgnc.genegroup.obo		False														hgnc.genegroup			hgnc.genegroup															
hgnc.symbol	HGNC gene symbol	https://www.genenames.org/	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.	^[A-Za-z-0-9_]+(\@)?$	DAPK1		https://www.genenames.org/data/gene-symbol-report/#!/symbol/$1				False				HGNC.SYMBOL										hgnc.symbol	hgnc.symbol										HgncSymbol		P353					
hgvs	Human Genome Variation Society Nomenclature	https://hgvs-nomenclature.org/stable/background/simple/	The HGVS Nomenclature is an internationally-recognized standard for the description of DNA, RNA and protein sequence variants. It is used to convey variants in clinical reports and to share variants in publications and databases. The HGVS Nomenclature is administered by the [HGVS Variant Nomenclature Committee (HVNC)](https://hgvs-nomenclature.org/stable/hvnc/) under the auspices of the [Human Genome Organization (HUGO)](https://hugo-int.org/).		NP_003997.1:p.Trp24Cys	reecehart@gmail.com	http://reg.clinicalgenome.org/allele?hgvs=$1				False											2.16.840.1.113883.6.282																P3331					
hinv.locus	H-InvDb Locus	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.	^HIX\d{7}(\.\d+)?$	HIX0004394		http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1				True				HINV.LOCUS										hinv.locus	hinv.locus																	
hinv.protein	H-InvDb Protein	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.	^HIP\d{9}(\.\d+)?$	HIP000030660		http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1				True				HINV.PROTEIN										hinv.protein	hinv.protein																	
hinv.transcript	H-InvDb Transcript	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.	^HIT\d{9}(\.\d+)?$	HIT000195363		http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1				True				HINV.TRANSCRIPT										hinv.transcript	hinv.transcript																	
hipsci	Human Induced Pluripotent Stem Cells Initiative	https://www.hipsci.org	Cell line databases/resources		HPSI0114i-bezi_1		https://www.hipsci.org/#/lines/$1				False						HipSci																										
hivreagentprogram	NIH HIV Reagent Program	https://www.hivreagentprogram.org/	Cell line collections (Providers)		ARP-1513		https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx				False						HIVReagentProgram																										
hl7.v2codesystem	HL7 V2 Code System	https://terminology.hl7.org/codesystems-v2.html	A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR.	^\d+$	0778		http://terminology.hl7.org/CodeSystem/v2-$1				False																																
hl7.v3codesystem	HL7 V3 Code System	https://terminology.hl7.org/codesystems-v2.html	A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR.	^\w+$	AcknowledgementCondition		https://terminology.hl7.org/CodeSystem-v3-$1				False																																
hmdb	Human Metabolome Database	http://www.hmdb.ca/	The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.	^HMDB\d+$	HMDB00001	david.wishart@ualberta.ca	http://www.hmdb.ca/metabolites/$1			HMDB	False				HMDB			000408			2622		nbdc00909		hmdb	hmdb				244		hmdb	r3d100011285			Hmdb		P2057					
hms.lincs.antibody	HMS Library of Integrated Network-based Cellular Signatures Antibodies	https://lincs.hms.harvard.edu/db/antibodies/	Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.	^8\d{4}$	80001		https://lincs.hms.harvard.edu/db/antibodies/$1				False																																
hms.lincs.cell	HMS LINCS Cell	https://lincs.hms.harvard.edu/db/cell/	Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.	^5\d{4}$	50583		https://lincs.hms.harvard.edu/db/cells/$1				False																																
hms.lincs.compound	HMS LINCS Compound	https://lincs.hms.harvard.edu/db/sm/	Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.	^1\d{4}-\d{3}$	10001-101		https://lincs.hms.harvard.edu/db/sm/$1			HMS-LINCS|hmsl_id	False																																
hms.lincs.dataset	HMS Library of Integrated Network-based Cellular Signatures Datasets	https://lincs.hms.harvard.edu/db/datasets/	Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.	^2\d{4}$	20003		https://lincs.hms.harvard.edu/db/datasets/$1				False																																
hoelzel	Hölzel Diagnostika	https://www.hoelzel-biotech.com	Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog.		40592-R001-100	info@hoelzel.de	https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1			hölzel	False																																
hog	Homologous Organ Groups	https://bgee.org/bgee/bgee?page=documentation#sectionHomologyRelationships	Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc.	^\d{7}$	0000255		https://biopragmatics.github.io/providers/hog/$1		ftp://ftp.bgee.org/general/ontologies/HOG.obo		False																																
hogenom	Database of Complete Genome Homologous Genes Families	http://hogenom.univ-lyon1.fr/	HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.	^[A-Z][A-Z0-9_]+\.PE\d+$	HOMO_3.PE998	perriere@biomserv.univ-lyon1.fr	http://hogenom.univ-lyon1.fr/query_sequence?Go=Submit+Query&seq=$1				False				HOGENOM								nbdc01858		hogenom	hogenom						hogenom					DB-0044						
hoip	Homeostasis imbalance process ontology	https://knowledge.brc.riken.jp/bioresource/ontology/HOIP	An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes.	^\d{7}$	0040379	yuki.yamagata@riken.jp	http://purl.bioontology.org/ontology/HOIP/HOIP_$1	https://github.com/yuki-yamagata/hoip/blob/c70ae6d4868ca951d075cec409e863fa4abe19b2/hoip_0308.owl			False	HOIP				HOIP																											
holofood.animal	HoloFood animal	https://www.holofooddata.org	The HoloFood Data Portal centralizes access to datasets from the HoloFood project, which explores host microbiota interactions in salmon and chicken production. It links phenotypic data with microbiome samples and derived genomic resources and therefore simplifies data integration, supporting researchers in multiomics and microbiome studies. The identifiers in the animal semantic space correspond to animals that samples in the database are obtained from.	^SAMEA\d{9}$	SAMEA112904733	tgilbert@sund.ku.dk	https://www.holofooddata.org/animal/$1				False																																
holofood.sample	HoloFood sample	https://www.holofooddata.org	The HoloFood Data Portal centralizes access to datasets from the HoloFood project, which explores host microbiota interactions in salmon and chicken production. It links phenotypic data with microbiome samples and derived genomic resources and therefore simplifies data integration, supporting researchers in multiomics and microbiome studies. The identifiers in the samples semantic space represent samples derived from animals in HoloFood trials.	^SAMEA\d{8}$	SAMEA10104908	tgilbert@sund.ku.dk	https://www.holofooddata.org/sample/$1				False																																
hom	Homology Ontology	https://github.com/BgeeDB/homology-ontology	This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.	^\d{7}$	0000049	bgee@sib.swiss	http://purl.obolibrary.org/obo/HOM_$1				False	HOM			HOM	HOM											hom	hom	HOM										Q81661651				
homd.seq	HOMD Sequence Metainformation	https://www.homd.org/	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.	^SEQF\d+(?:\.\d+)?$	SEQF1003.1	tchen@forsyth.org	https://v31.homd.org/genome/genome_description?gid=$1				False				HOMD.SEQ										homd.seq	homd.seq						homd.seq											
homd.taxon	Human Oral Microbiome Database	http://www.homd.org/	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.	^\d+$	811	tchen@forsyth.org	http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1				False				HOMD.TAXON										homd.taxon	homd.taxon						homd.taxon											
homologene	HomoloGene	https://www.ncbi.nlm.nih.gov/homologene/	HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.	^\d+$	1000	sayers@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/homologene/$1				False				HOMOLOGENE								nbdc00101		homologene	homologene						homologene				Homologene		P593					
homosaurus	Homosaurus	http://homosaurus.org	An international LGBTQ+ linked data vocabulary		queerNewspapers	adolphok@vcu.edu	http://homosaurus.org/terms/$1				False																																
horizon_discovery	Horizon Discovery cell line collection	https://horizondiscovery.com/	Cell line collections (Providers)		HD+118-001		https://horizondiscovery.com/en/search?searchterm=$1				False						Horizon_Discovery																										
hoso	Healthcare Organizations and Services Ontology	https://openlhs.github.io/HOSO/	HOSO is an ontology of informational entities and processes related to healthcare organizations and services.	^\d{7}$	0000001	paul.fabry@usherbrooke.ca					False																																
hovergen	Homologous Vertebrate Genes Database	https://pbil.univ-lyon1.fr/databases/hovergen.php	HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.	^HBG\d+$	HBG004341	duret@biomserv.univ-lyon1.fr	http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN				True				HOVERGEN								nbdc00284		hovergen	hovergen						hovergen											
hp	Human Phenotype Ontology	http://www.human-phenotype-ontology.org/	The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.	^\d{7}$	0011140	dr.sebastian.koehler@gmail.com	http://purl.obolibrary.org/obo/HP_$1		http://purl.obolibrary.org/obo/hp.obo	hpo	False	HPO		1937	HPO	HPO						2.16.840.1.113883.6.339	nbdc02559		hp	hp	hp	hp	HP						hp			P3841	Q17027854				
hpa	Human Protein Atlas tissue profile information	http://www.proteinatlas.org/	The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.	^ENSG\d{11}$	ENSG00000026508	mathias.uhlen@scilifelab.se	http://www.proteinatlas.org/$1				False				HPA										hpa	hpa						hpa	r3d100010931				DB-0046						
hpath	Histopathology Ontology	https://github.com/Novartis/hpath	"An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.

The original structure of the histopathology ontology was designed ab initio when the [INHAND](http://www.goreni.org/) manuscripts were not available. However, the ontology has been repetitively reviewed and updated to align with the subsequently published INHAND manuscripts. During this process cross references to INHAND lesion identifiers were added to the ontology. [from GitHub]"	^\d+$	2000191	carlo.ravagli@novartis.com	http://purl.obolibrary.org/obo/MC_$1		https://raw.githubusercontent.com/Novartis/hpath/master/src/hpath.obo	MC	False																																
hpm.peptide	Human Proteome Map Peptide	http://www.humanproteomemap.org/index.php	The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.	^\d+$	9606117		http://www.humanproteomemap.org/spectrum.php?pep_id=$1				False				HPM.PEPTIDE										hpm.peptide	hpm.peptide																	
hpm.protein	Human Proteome Map	http://www.humanproteomemap.org/index.php	The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.	^\d+$	1968		http://www.humanproteomemap.org/protein.php?hpm_id=$1				True				HPM.PROTEIN										hpm.protein	hpm.protein																	
hprd	Human Protein Reference Database	http://www.hprd.org/	The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.	^\d+$	00001	pandey@jhmi.edu	http://www.hprd.org/protein/$1				True				HPRD								nbdc00103		hprd	hprd				14		hprd	r3d100010978										
hpscreg	Human Pluripotent Stem Cell Registry	https://hpscreg.eu/	hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).	^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$	BCRTi001-A	stefanie.seltmann@ibmt.fraunhofer.de	https://hpscreg.eu/cell-line/$1				False						hPSCreg								hpscreg	hpscreg							r3d100012863										
hsapdv	Human Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv	Life cycle stages for Human	^\d{7}$	0000194	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/HsapDv_$1			HsapDv	False	HSAPDV			HSAPDV	HSAPDV											hsapdv	hsapdv	HsapDv										Q81661653				
hsdb	Hazardous Substances Data Bank	https://pubchem.ncbi.nlm.nih.gov/source/hsdb	The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas.	^\d+$	5621		https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1				False												nbdc00930															P2062					
hso	Health Surveillance Ontology	https://w3id.org/hso	"The health Surveillance Ontology (HSO) focuses on ""surveillance system level data"", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."	^\d{7}$	0000062	fernanda.dorea@sva.se	http://purl.obolibrary.org/obo/HSO_$1				False	HSO				HSO											hso	hso	HSO										Q113012664				
hssp	Database of homology-derived secondary structure of proteins	http://swift.cmbi.kun.nl/swift/hssp/	HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.	^\w{4}$	102l	chris@sanderlab.org	ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2				False				HSSP										hssp	hssp						hssp											
htn	Hypertension Ontology	https://github.com/aellenhicks/htn_owl	An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines	^\d{8}$	00000014	aellenhicks@gmail.com	http://purl.obolibrary.org/obo/HTN_$1				False	HTN				HTN											htn	htn	HTN										Q81661655				
hubmap.collection	Human BioMolecular Atlas Program Collection	https://portal.hubmapconsortium.org/collections	The collections section of HuBMAP groups related datasets, samples, and metadata into organized categories. Each collection has a unique identifier that links it to its constituent datasets.	^[a-f0-9]{32}$	3ae4ddfc175d768af5526a010bfe95aa	katy@indiana.edu	https://portal.hubmapconsortium.org/browse/collection/$1				False																																
hubmap.dataset	Human BioMolecular Atlas Program Dataset	https://portal.hubmapconsortium.org/search/datasets	The HuBMAP dataset collection provides high resolution molecular data from human tissues, with unique identifiers that enable tracking, citation, and integration of datasets across diverse assay types and donor samples for biomedical research.	^[a-f0-9]{32}$	4bbe3b53a985e999eb66fee3297ec3f8	katy@indiana.edu	https://portal.hubmapconsortium.org/browse/dataset/$1				False																																
hubmap.donor	Human BioMolecular Atlas Program Donor	https://portal.hubmapconsortium.org/search/donors	The HuBMAP donors dataset contains demographic and clinical metadata for individuals who donated tissue samples. Each donor has a unique identifier used to link them to their associated tissue samples and derived experimental data.	^[a-f0-9]{32}$	a3bc9e6193c47998758ac9d9bf9ddbb6	katy@indiana.edu	https://portal.hubmapconsortium.org/browse/donor/$1				False																																
hubmap.sample	Human BioMolecular Atlas Program Sample	https://portal.hubmapconsortium.org/search/samples	The samples subsection of HuBMAP provides metadata about individual tissue samples collected from donors, and are the downstream experimental datasets for scRNA sequencing. Each sample has a unique identifier that links it to donor information, anatomical source, and related datasets.	^[a-f0-9]{32}$	a3bc9e6193c47998758ac9d9bf9ddbb6	katy@indiana.edu	https://portal.hubmapconsortium.org/browse/sample/$1				False																																
huge	Human Unidentified Gene-Encoded	http://www.kazusa.or.jp/huge/	The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.	^KIAA\d{4}$	KIAA0001	ohara@kazusa.or.jp	https://www.kazusa.or.jp/huge/gfpage/$1				False				HUGE								nbdc00104		huge	huge						huge					DB-0049						
humap	Human Protein Complex Map	https://humap3.proteincomplexes.org	The hu.MAP integrates several large scale protein interaction datasets to obtain a comprehensive view of protein complexes.		huMAP3_04143.1	ksdrew@uic.edu	https://humap3.proteincomplexes.org/displayComplexes?complex_key=$1			humap3	False																																
hydra	The Hydra Core Vocabulary	http://www.w3.org/ns/hydra/spec/latest/core/	A lightweight vocabulary for hypermedia-driven Web APIs		TemplatedLink						False													hydra									r3d100011525							hydra			
iana.mediatype	Media Types	https://www.iana.org/assignments/media-types/media-types.xhtml	The official list of MIME types, now renamed to media types	^(application|audio|font|haptics|image|message|model|multipart|text|video)(/.*)?$	application/cdmi-queue	alexey.melnikov@isode.com	https://www.iana.org/assignments/media-types/$1				False																																
iao	Information Artifact Ontology	https://github.com/information-artifact-ontology/IAO/	An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.	^\d{7}$	0000030	zhengj2007@gmail.com	http://purl.obolibrary.org/obo/IAO_$1		http://purl.obolibrary.org/obo/iao.obo		False	IAO			IAO	IAO									iao	iao	iao	iao	IAO						iao				Q55118415				
iao.issue	Information Artifact Ontology Issue Tracker	https://github.com/information-artifact-ontology/IAO/issues	An issue on the Information Artifact Ontology GitHub issue tracker	^\d+$	206		https://github.com/information-artifact-ontology/IAO/issues/$1				False																																
ical	iCalendar in RDF	https://www.w3.org/2002/12/cal/	A vocabulary for calendar events and related objects		Vevent						False																													ical			
icd10	International Classification of Diseases, 10th Revision	https://icd.who.int/browse10	"The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.

Note that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States."	^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\.[0-9]))?))$	C34	info@who.int	https://icd.who.int/browse10/2019/en#/$1	https://w3id.org/biopragmatics/resources/icd10/icd10.owl	https://w3id.org/biopragmatics/resources/icd10/icd10.obo	ICD|ICD-10|ICD10|ICD10WHO	False	ICD10		447	ICD	ICD10					2611	2.16.840.1.113883.6.3			icd	icd						icd						P494	Q50018				
icd10cm	International Classification of Diseases, 10th Revision, Clinical Modification	https://www.icd10data.com/ICD10CM	ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States issued by the National Center for Health Statistics (NCHS) and Centers for Medicare & Medicaid Services (CMS).	^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$	F45.21	pbrooks@hcfa.gov	https://www.icd10data.com/search?s=$1			ICD10CM	False	ICD10CM				ICD10CM						2.16.840.1.113883.6.90																P4229					
icd10pcs	International Classification of Diseases, 10th Revision, Procedure Coding System	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10PCS	"ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.

ICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records."		01N50ZZ	patricia.brooks2@cms.hhs.gov	https://www.findacode.com/code.php?set=ICD10PCS&c=$1				False	ICD10PCS				ICD10PCS						2.16.840.1.113883.6.4																P1690					
icd11	International Classification of Diseases, 11th Revision (Foundation Component)	https://icd.who.int/	The ICD-11 Foundation is the comprehensive base layer of the International Classification of Diseases, encompassing all diagnostic concepts, definitions, and semantic relationships, designed for flexibility and adaptability across various use cases, including research, ontology development, and detailed health data analysis.	^[1-9]\d*$	402558626	icd@who.int	https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1	https://w3id.org/biopragmatics/resources/icd11/icd11.owl	https://w3id.org/biopragmatics/resources/icd11/icd11.obo	ICD-11|ICD11|icd11.foundation	False											2.16.840.1.113883.6.347	nbdc02556															P7807					
icd11.code	ICD 11 Codes	https://icd.who.int/en	An ICD-11 code is a standardized alphanumeric identifier used to classify and document diseases, conditions, and health-related issues for global healthcare and statistical purposes.	^[0-9A-Z]+(\.[0-9A-Z]+)?$	NA06.8D						False																																
icd9	International Classification of Diseases, 9th Revision	https://www.cdc.gov/nchs/icd/icd9.htm	The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics.	^((\d\d\d|V\d\d|E[8-9]\d\d)(\.\d{1,2})?)|(\d{1,3}-\d{1,3})$	277.9		http://www.icd9data.com/getICD9Code.ashx?icd9=$1			ICD9|ICD9_2005|MTHICD9_2006	False			447								2.16.840.1.113883.6.42																P493	Q50018				
icd9cm	International Classification of Diseases, 9th Revision, Clinical Modification	https://www.cdc.gov/nchs/icd/icd9cm.htm	ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.	^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$	784	pbrooks@hcfa.gov	http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1			IC9CM|ICD9CM|ICD9CM_2005|ICD9CM_2006|ICDCM_2005	False	ICD9CM				ICD9CM						2.16.840.1.113883.6.2																P1692	Q5737131				
icdc	Integrated Canine Data Commons	https://caninecommons.cancer.gov/#/	The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.	^\d{6}$	000009	annika.jahnke-bornemann@uni-hamburg.de	https://caninecommons.cancer.gov/#/study/$1				False														icdc								r3d100010405										
icdo	International Classification of Diseases for Oncology	https://www.who.int/classifications/icd/adaptations/oncology/en/	The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases	^[8-9]\d{3}(/[0-3])?$	9861/3		http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1			ICD-O|ICDO	False			445								2.16.840.1.113883.6.43										icdo						P563	Q1430635				
iceberg.cime	ICEberg cis-integrative and mobilizable element	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_CIME.php?type=alpha&alpha=100	ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.	^\d+$	6	hyou@sjtu.edu.cn	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME				False																																
iceberg.element	ICEberg integrative and conjugative element	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=alpha&alpha=100	ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.	^\d+$	100		https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1			iceberg.ice	False				ICEBERG.ELEMENT										iceberg.element	iceberg.element																	
iceberg.family	ICEberg family	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_fam.php	ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.	^\d+$	1	hyou@sjtu.edu.cn	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1				False				ICEBERG.FAMILY										iceberg.family	iceberg.family																	
iceberg.ime	ICEberg integrative and mobilizable element	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_IME.php?type=alpha&alpha=100	ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.	^\d+$	1	hyou@sjtu.edu.cn	https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME				False																																
icechem	Integrated Chemical Environment - Chemical data	https://ice.ntp.niehs.nih.gov	"The Integrated Chemical Environment (ICE) provides high-quality curated data and appropriate tools to support development and evaluation of new, revised, and alternative methods. ICE provides free online access to curated in vivo and in vitro test data, in silico toxicity predictions and chemical property data, reference chemical lists, and computational tools for chemical characterization and predicting toxicity.
ICE supports the following: (i) Data integration: brings together available data, including data on formulations; (ii) Results exploration: enables dynamic, graphical exploration with publication-quality graphics; (iii) Data analysis: allows characterization of data using online workflows, and (iv) FAIR data access: data are findable, accessible, interoperable, and reusable."	^\d{2,7}-\d{2}-\d|DTXSID\d{7,9}|[A-Z]{14}-[A-Z]{8}[SN][A-Z]-[A-Z]$	DTXSID7032004		https://ice.ntp.niehs.nih.gov/api/v1/search?chemid=$1				False														ice.chem																		
iceo	Integrative and Conjugative Element Ontology	https://github.com/ontoice/ICEO	A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.	^\d{7}(_\d)?$	0000712_1	liumeng94@sjtu.edu.cn	http://purl.obolibrary.org/obo/ICEO_$1				False	ICEO				ICEO											iceo	iceo	ICEO										Q81661661				
icepo	Ion Channel Electrophysiology Ontology	https://download.nextprot.org/pub/current_release/controlled_vocabularies/	The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools.	^\d{7}$	0000002	pascale.gaudet@isb-sib.ch	https://biopragmatics.github.io/providers/icepo/$1		https://download.nextprot.org/pub/current_release/controlled_vocabularies/icepo.obo		False																																
icf	International Classification of Functioning, Disability and Health	https://icd.who.int/dev11/l-icf/en	The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels.	^\d+$	326705068	info@who.int	https://icd.who.int/dev11/l-icf/en#/http://id.who.int/icd/entity/$1				False	ICF				ICF						2.16.840.1.113883.6.254																					
iclc	Interlab Cell Line Collection	http://www.iclc.it	Cell line collections (Providers)	^\w{3}\d+$	ATL98012		http://www.iclc.it/details/det_list.php?line_id=$1				False						ICLC																										
icldb	Insect Cell Line Database	https://entomology.ca.uky.edu/aginsectcellsdatabase	We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)		64ba	surjeet.arya@uky.edu	https://entomology.ca.uky.edu/content/$1				False						ICLDB																										
ico	Informed Consent Ontology	https://github.com/ICO-ontology/ICO	The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.	^\d{7}$	0000066	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/ICO_$1				False	ICO			ICO	ICO											ico	ico	ICO										Q55118417				
iconclass	Iconclass Classification	https://iconclass.org	A classification system for the subject matter of works of art, originating from work from Henri van de Waal in the 1940.		3	ep@epoz.org	https://iconclass.org/$1	https://w3id.org/biopragmatics/resources/iconclass/iconclass.owl	https://w3id.org/biopragmatics/resources/iconclass/iconclass.obo		False			459																									Q1502787				
icpd.project	Indian Crop Phenome Database Project	https://ibdc.dbtindia.gov.in/icpd	This resource is about projects in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]	^PPJ_\d+$	PPJ_100024	sonia.balyan@ibdc.rcb.res.in					False																																
icpd.study	Indian Crop Phenome Database Study	https://ibdc.dbtindia.gov.in/icpd	This resource is about studies in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]	^PST_\d+$	PST_100013	sonia.balyan@ibdc.rcb.res.in	https://ibdc.dbtindia.gov.in/icpd/study-view-home/$1				False																																
ictv	International Committee on Taxonomy of Viruses Ontology	https://github.com/EVORA-project/ictv-ontology	Ontology representation of the [International Committee on Taxonomy of Viruses (ICTV)](https://ictv.global/) for the [EVORA project](https://evora-project.eu/)		ICTV19990991		http://ictv.global/id/MSL40/$1				False			507														ictv															
ideal	Intrinsically Disordered proteins with Extensive Annotations and Literature	https://www.ideal-db.org	IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.	^IID\d+$	IID00001	sfukuchi@maebashi-it.ac.jp	http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1				False				IDEAL								nbdc01456		ideal	ideal				701							DB-0251						
ido	Infectious Disease Ontology	http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology	Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.	^\d{7}$	0000504	Lindsay.Cowell@utsouthwestern.edu	http://purl.obolibrary.org/obo/IDO_$1				False	IDO			IDO	IDO									ido	ido	ido	ido	IDO														
idocovid19	The COVID-19 Infectious Disease Ontology	https://github.com/infectious-disease-ontology-extensions/ido-covid-19	The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.	^\d{7}$	0001191	johnbeverley2021@u.northwestern.edu	http://purl.obolibrary.org/obo/COVIDO_$1	https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19			False	IDO-COVID-19				IDO-COVID-19												idocovid19															
idoden	Dengue Fever Ontology	https://bioportal.bioontology.org/ontologies/IDODEN	An ontology for dengue fever.	^\d{7}$	0003463	elvira@imbb.forth.gr	http://purl.bioontology.org/ontology/IDODEN_$1				False	IDODEN				IDODEN																											
idog	Integrated Resource for Domestic Dog	https://ngdc.cncb.ac.cn/idog/	Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses.	^\d+$	4	baoym@big.ac.cn	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=$1				False												nbdc02480										r3d100012176										
idomal	Malaria Ontology	https://www.vectorbase.org/ontology-browser	An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.	^(5?)\d{7}$	0002350	topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/IDOMAL_$1		http://purl.obolibrary.org/obo/idomal.obo		True	IDOMAL			IDOMAL	IDOMAL											idomal	idomal	IDOMAL														
idoo	Identifiers.org Ontology	http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology	Identifiers.org Ontology	^[0-9a-zA-Z]+$	DataCollection		http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1				False														idoo	idoo																	
idot	Identifiers.org Terms	http://biomodels.net/vocab/idot.rdf	Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.	^[A-Za-z]+$	Namespace		https://biomodels.net/vocab/idot.rdf#$1				False				idot										idot	idot																	
idpo	Intrinsically Disordered Proteins Ontology	https://www.disprot.org/ontology	IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.	^\d{5}$	00056	f.quaglia@ibiom.cnr.it	https://www.disprot.org/idpo/IDPO:$1				False																																
idr	Image Data Resource	https://idr.openmicroscopy.org	"Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image"" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools."	^[0-9]{4}$	0001	j.a.moore@dundee.ac.uk	https://idr.openmicroscopy.org/search/?query=Name:idr$1				False														idr								r3d100012435										
idsa	International Data Spaces Information Model	https://www.internationaldataspaces.org/	This ontology defines classes and properties for describing participants, infrastructure, data and services of the International Data Spaces (formerly known as Industrial Data Space).				https://w3id.org/idsa/core/$1				True																								idsa								
iedb.assay	Immune Epitope Database Assays	https://www.iedb.org/	Identifiers for specific experimental assays that serve as evidence for immune-related studies.	^\d+$	1691753	rvita@liai.org	https://www.iedb.org/assay/$1				False												nbdc00924										r3d100012702										
iedb.epitope	Immune Epitope Database Epitopes	https://www.iedb.org/	Identifiers for epitopes, which are the specific parts of antigens recognized by the immune system.	^\d+$	117395	rvita@liai.org	https://www.iedb.org/epitope/$1				False												nbdc00924									tied	r3d100012702										
iedb.mhc	Immune Epitope Database MHC Restrictions	https://www.iedb.org/	Identifiers for Major Histocompatibility Complex (MHC) restrictions of immune cells, detailing genetic factors that influence immune recognition.	^\d+$	86	rvita@liai.org	https://www.iedb.org/mhc/$1				False												nbdc00924										r3d100012702										
iedb.receptor	Immune Epitope Database Receptors	https://www.iedb.org/	Identifiers for immune receptors, representing receptor complexes or groups studied for their interactions with antigens or epitopes.	^\d+$	47	rvita@liai.org	https://www.iedb.org/receptor/$1				False												nbdc00924										r3d100012702										
iedb.reference	Immune Epitope Database References	https://www.iedb.org/	Identifiers for references, typically linking to sources of evidence such as publications that support data within IEDB.	^\d+$	1038233	rvita@liai.org	https://www.iedb.org/reference/$1				False												nbdc00924		iedb								r3d100012702										
ieee.author	IEEE Xplore author ID	https://ieeexplore.ieee.org	identifier for an author in IEEE Xplore	^[1-9]\d*$	37271072100		https://ieeexplore.ieee.org/author/$1				False																											P6479					
ieee.document	IEEE Xplore document ID	https://ieeexplore.ieee.org	identifier for a document in IEEE Xplore	^[1-9]\d*$	1580791		https://ieeexplore.ieee.org/document/$1				False																											P6480					
ietf.language	Internet Engineering Task Force Language Tag	http://www.iana.org/assignments/language-subtag-registry/language-subtag-registry	Shorthand representations of languages and their subtypes	^\w{2,3}(-\w+)?$	en-GB					bcp47	False			2022																								P305	Q1059900				
iev	Event (INOH pathway ontology)	http://www.inoh.org	The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure.	^\d{7}$	0000000		http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1				True				IEV												iev					iev											
igrhcellid	Integrated Genomic Resources of human Cell Lines for Identification	http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi	Cell line databases/resources		ACHN		http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1				False						IGRhCellID																										
igsn	International Generic Sample Number	https://ev.igsn.org/home	IGSN is a globally unique and persistent identifier for material samples and specimens.  IGSNs are obtained from IGSN e.V. Agents.	^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$	AU124	jens.klump@csiro.au	http://igsn.org/$1				False			20719											igsn	igsn																	
igsr	International Genome Sample Resource	https://www.internationalgenome.org/	The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project.		NA06985	flicek@ebi.ac.uk	https://www.internationalgenome.org/data-portal/sample/$1				False						IGSR																r3d100010180										
ihw	International Histocompatibility Workshop cell lines	https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html	The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics.	^IHW\d+$	IHW09326						False						IHW																										
iirds.core	International Standard for Intelligent Information Request and Delivery Core Ontology	https://github.com/iirds-consortium/models	An ontology encoding the core metadata based on the Intelligent Information Request and Delivery (iiRDS) standard		Action		http://iirds.tekom.de/iirds#$1				False																								iirds								
iirds.mch	International Standard for Intelligent Information Request and Delivery Machinery Ontology	https://github.com/iirds-consortium/models	An ontology encoding machinery based on the Intelligent Information Request and Delivery (iiRDS) standard		ConsumableSupply		http://iirds.tekom.de/iirds/domain/machinery#$1				False																								iirdsmch								
iirds.sft	International Standard for Intelligent Information Request and Delivery Software Ontology	https://github.com/iirds-consortium/models	An ontology encoding software based on the Intelligent Information Request and Delivery (iiRDS) standard		iirdsSoftwareDomainEntity		http://iirds.tekom.de/iirds/domain/software#$1				False																								iirdssft								
illumina.probe	Illumina Probe Identifier	https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-6790/A-GEOD-6790.adf.txt	Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip.	^ILMN_\d+$	ILMN_129894						False																																
imanis	Imanis Life Sciences cell line products	https://www.imanislife.com/collections/cell-lines/	Cell line collections (Providers)		CL070		https://www.imanislife.com/?s=$1				False						Imanis																										
imdrf	International Medical Device Regulators Forum	http://www.imdrf.org/	The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence.								False																																
imex	International Molecular Exchange	https://www.ebi.ac.uk/intact/	The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.	^\d+(-\d+)?$	19210-3	orchard@ebi.ac.uk	https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1				False				IMEX										imex	imex				422		imex	r3d100010669										
img.gene	Integrated Microbial Genomes Gene	http://img.jgi.doe.gov/	The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.	^\d+$	638309541	nckyrpides@lbl.gov	http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1				False				IMG.GENE										img.gene	img.gene						img.gene											
img.taxon	Integrated Microbial Genomes Taxon	http://img.jgi.doe.gov/	The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.	^\d+$	648028003	nckyrpides@lbl.gov	http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1				False				IMG.TAXON										img.taxon	img.taxon						img.taxon											
imgt.hla	IMGT/HLA human major histocompatibility complex sequence database	https://www.ebi.ac.uk/imgt/hla/allele.html	IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.	^[A-Z0-9*:]+$	A*01:01:01:01	steven.marsh@ucl.ac.uk	https://www.ebi.ac.uk/ipd/imgt/hla/alleles/?query=eq(name,%22$1%22)			IPD-IMGT/HLA	False				IMGT.HLA		IPD-IMGT/HLA				2773		nbdc00106		imgt.hla	imgt.hla						imgthla	r3d100010804										
imgt.ligm	ImMunoGeneTics database covering immunoglobulins and T-cell receptors	http://www.imgt.org/	IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.	^M\d+$	M94112	marie-paule.lefranc@umontpellier.fr	http://www.imgt.org/ligmdb/view?id=$1				False				IMGT.LIGM										imgt.ligm	imgt.ligm						imgt.ligm											
imgt.primerdb	IMGT/PRIMER-DB	http://imgt.org/IMGTPrimerDB/	The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR).		IPP900099		http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList				False																					imgt.primerdb	r3d100012535										
imotdb	Database of Spatially Interacting Motifs in Proteins	http://caps.ncbs.res.in/imotdb/	The interacting motif database or iMOTdb , lists interacting motifs thatare identified for all structural entries in the PDB. The conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting the common motifs shared among all superfamily members.		53784		http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1				True																			207		imotdb											
imr	Molecule role (INOH Protein name/family name ontology)	http://www.inoh.org	MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data.	^\d{7}$	0000001	curator@inoh.org	http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$1				True				IMR												imr					imr											
imsr.apb	NHMRC Australian PhenomeBank	https://pb.apf.edu.au/phenbank/homePage.html	The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]	^\d+$	7345		https://pb.apf.edu.au/phenbank/strain.html?id=$1				False																							IMSR_APB									
imsr_em	European Mouse Mutant Archive	https://www.infrafrontier.eu/emma/	Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]	^\d+$	11478	d.smedley@qmul.ac.uk	https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1				False																							IMSR_EM									
imsr_tac	Taconic Biosciences	https://www.taconic.com/	Supplier of mice for research purposes. [from RRID]		1178		https://scicrunch.org/resolver/RRID:IMSR_TAC_$1				False																							IMSR_TAC									
inaturalist.observation	iNaturalist Observation	https://www.inaturalist.org/observations	The identifier for an observation in iNaturalist	^[1-9]\d*$	36010371		https://www.inaturalist.org/observations/$1				False																											P5683					
inaturalist.place	iNaturalist Place	https://www.inaturalist.org/places	Identifier for a place in iNaturalist	^[1-9]\d*$	7207		https://www.inaturalist.org/places/$1				False																											P7471					
inaturalist.taxon	iNaturalist Taxonomy	https://www.inaturalist.org/taxa	Identifier for a species in iNaturalist	^[1-9]\d{0,6}$	21723		https://www.inaturalist.org/taxa/$1				False																											P3151					
inaturalist.user	iNaturalist User	https://www.inaturalist.org/users	Identifier for a user in iNaturalist	^[1-9]\d*$	1426686		https://www.inaturalist.org/users/$1				False																																
inchi	InChI	https://www.ebi.ac.uk/chebi/	The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.	^InChI\=1S?\/[A-Za-z0-9\.]+(\+[0-9]+)?(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,\/\?\;\.]+)*$	InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3	jmg11@cam.ac.uk	https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString=$1				False				INCHI										inchi	inchi												P234	Q203250				
inchikey	InChIKey	http://www.chemspider.com/	The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.	^[A-Z]{14}\-[A-Z]{10}(\-[A-Z])?$	RYYVLZVUVIJVGH-UHFFFAOYSA-N		https://www.chemspider.com/search?params=$1				False				INCHIKEY										inchikey	inchikey										InchiKey		P235	Q21445422				
infores	Information Resource Registry	https://biolink.github.io/information-resource-registry/	The information resource registry is a listing of data sources present in the NCATS Data Translator system. Each information resource has an identifier, a short description, and a URL to more information about that resource.	^[a-z0-9-_.]+$	agrkb	smoxon@lbl.gov	https://w3id.org/information-resource-registry/$1				False																																
informall	InformAll Allergenic Food Database	http://research.bmh.manchester.ac.uk/informAll/	The InformAll database was developed to provide a credible source of information on allergenic food materials of both plant and animal origin.	^\d+$	410		http://research.bmh.manchester.ac.uk/informall/allergenic-food/?FoodId=$1				False																																
infosecsos	InfoSecSoS Ontology	https://zenodo.org/record/6621882	InfoSecSoS - Ontology for Information Security Management in Systems-of-Systems		Accept		http://www.labesc.unirio.br/InfoSecSoS#$1				False																								infosecsos								
inhand	The International Harmonization of Nomenclature and Diagnostic criteria	https://www.goreni.org/gr3_nomenclature.php	The standard reference for nomenclature and diagnostic criteria in toxicologic pathology.			harkemaj@msu.edu					False																																
inn	International Nonproprietary Names	https://www.who.int/teams/health-product-and-policy-standards/inn	Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.		fluticasone		https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1			INN_ID	False																											P2275	Q824258				
innatedb	A Knowledge Resource for Innate Immunity Interactions and Pathways	http://www.innatedb.ca/	InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.		20021	david.lynn@flinders.edu.au	http://www.innatedb.ca/getGeneCard.do?id=$1				False												nbdc01870							264		innatedb	r3d100010676										
ino	Interaction Network Ontology	https://github.com/INO-ontology/ino	he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.	^\d{7}$	0000003	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/INO_$1				False	INO				INO											ino	ino	INO										Q55118418				
insdc	Nucleotide Sequence Database	https://www.ebi.ac.uk/ena/	The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4,6}\d{8,10}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	X58356		https://www.ebi.ac.uk/ena/data/view/$1				False				INSDC								nbdc02567		insdc	insdc						insdc				Insdc							
insdc.cds	INSDC CDS	http://getentry.ddbj.nig.ac.jp	The coding sequence or protein identifiers as maintained in INSDC.	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	AAA35559		http://getentry.ddbj.nig.ac.jp/getentry/dad/$1				False				INSDC.CDS										insdc.cds	insdc.cds																	ncbiprotein
insdc.gca	Genome assembly database - INSDC accessions	https://www.ncbi.nlm.nih.gov/datasets/genome/	The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.	^GCA_[0-9]{9}(\.[0-9]+)?$	GCA_000155495.1		https://www.ncbi.nlm.nih.gov/datasets/genome/$1				False				INSDC.GCA										insdc.gca	insdc.gca																	ncbi.assembly
insdc.gcf	Genome assembly database - RefSeq accessions	https://www.ncbi.nlm.nih.gov/	The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.	^GCF_[0-9]{9}(\.[0-9]+)?$	GCF_000001405		https://www.ncbi.nlm.nih.gov/datasets/genome/$1			insdc.gcf	False														refseq.gcf																		ncbi.assembly
insdc.run	International Nucleotide Sequence Database Collaboration (INSDC) Run	https://www.insdc.org/	An experimental run, served thrugh the ENA	^(E|D|S)RR[0-9]{6,}$	ERR436051		https://www.ebi.ac.uk/ena/browser/view/$1				False																																
insdc.sra	Sequence Read Archive	https://www.ncbi.nlm.nih.gov/sra	The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.	^[SED]R[APRSXZ]\d+$	SRX000007	Hugh.Shanahan@rhul.ac.uk	https://www.ncbi.nlm.nih.gov/sra/$1				False				INSDC.SRA										insdc.sra	insdc.sra							r3d100010775										
inspire.theme	INSPIRE theme register	https://inspire.ec.europa.eu/theme	"The INSPIRE theme register contains all spatial data themes, as defined in the Annexes of the INSPIRE Directive ( Directive 2007/2/EC of the European Parliament and of the Council of 14 March 2007 establishing an Infrastructure for Spatial Information in the European Community (INSPIRE)). The descriptions of the themes are based on version 3.0 of the ""Definition of Annex Themes and Scope (D 2.3)"" by the data specifications drafting team and subsequent updates by the INSPIRE Thematic Working Groups (TWGs). (from homepage)"		mr		https://inspire.ec.europa.eu/theme/$1				False																																
intact	IntAct protein interaction	https://www.ebi.ac.uk/intact/	IntAct provides a freely available, open source database system and analysis tools for protein interaction data.	^EBI\-[0-9]+$	EBI-2307691	kalpanap@ebi.ac.uk	https://www.ebi.ac.uk/intact/interaction/$1				False				INTACT								nbdc00507		intact	intact				111		intact	r3d100010671			Intact	DB-0051						
intact.molecule	IntAct Molecule	https://www.ebi.ac.uk/intact/	IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.	^EBI\-[0-9]+$	EBI-366083		https://www.ebi.ac.uk/intact/search?query=$1				False				INTACT.MOLECULE										intact.molecule	intact.molecule																	
integbio	Integbio	https://integbio.jp/en/	Integbio Database Catalog provides whereabouts information (URL), database description, biological species and other attributes (metadata) of Japanese and international life science databases to make it easier for users to find databases they need. This catalog has been developed as a part of the integration of life science databases promoted by four ministries in Japan: the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor, and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF), and the Ministry of Economy, Trade, and Industry of Japan (METI). (from https://integbio.jp/dbcatalog/en/about)	^nbdc\d+$	nbdc01071	kwsm@dbcls.rois.ac.jp	https://catalog.integbio.jp/dbcatalog/en/record/$1				False																																
interfil	Human Intermediate Filament Database	http://www.interfil.org	The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants.		NM_006262		http://www.interfil.org/details.php?id=$1				False																					interfil											
interlex	InterLex	https://www.fdilab.org	InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. 	^[0-9]+$	0101963	mmartone@ucsd.edu	https://scicrunch.org/scicrunch/interlex/view/ilx_$1			ILX	False														ilx													P696					
interpro	InterPro	http://www.ebi.ac.uk/interpro/index.html	InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.	^IPR\d{6}$	IPR016380	agb@ebi.ac.uk	https://www.ebi.ac.uk/interpro/entry/InterPro/$1	https://w3id.org/biopragmatics/resources/interpro/interpro.owl	https://w3id.org/biopragmatics/resources/interpro/interpro.obo	IP|IPR|InterPro	False				IPR						1133		nbdc00108		interpro	interpro	ipr					interpro	r3d100010798			Interpro	DB-0052	P2926	Q114677890				
iobc	Interlinking Ontology for Biological Concepts	https://github.com/kushidat/IOBC	"Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: ""Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International""."		200906038218908385	kushida@biosciencedbc.jp	http://purl.jp/bio/4/id/$1				False	IOBC				IOBC																											
iofcore	Industrial Ontology Foundry (IOF) Core Ontology	https://oagi.org/pages/Released-Ontologies	The IOF Core Ontology contains notions found to be common across multiple manufacturing domains. This file is an RDF implementation of these notions. The ontology utilizes the Basic Formal Ontology or BFO as a top-level ontology but also borrows terms from various domain-independent or mid-level ontologies. The purpose of the ontology is to serve as a foundation for ensuring consistency and interoperability across various domain-specific reference ontologies the IOF publishes.		hasSpecifiedOutput		https://spec.industrialontologies.org/ontology/core/Core/$1	https://github.com/iofoundry/ontology/raw/refs/heads/master/core/Core.rdf			False																								iofcore								
ioio	Individual Organism Information Ontology	https://openlhs.github.io/IOIO/	An ontology of information entities about an individual	^\d{7}$	0000001		http://purl.obolibrary.org/obo/IOIO_$1	https://github.com/OpenLHS/IOIO/raw/refs/heads/main/IOIO.owl			False																																
ipi	International Protein Index	http://www.ebi.ac.uk/IPI	IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers.		IPI00000001		http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default				True				IPI								nbdc00911									ipi											
irct	Iranian Registry of Clinical Trials	https://en.irct.ir/	"Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)
Note that the website uses a different identifier then the one reported in this semantic space."	^IRCT\d+N\d+$	IRCT20080904001199N7						False																																
ird.segment	IRD Segment Sequence	http://www.fludb.org/	Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope  and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).	^\w+(\_)?\d+(\.\d+)?$	CY077097	richard.scheuermann@nih.gov	http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1				False				IRD.SEGMENT										ird.segment	ird.segment						ird.segment											
irefweb	iRefWeb	http://wodaklab.org/iRefWeb/	iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.	^\d+$	617102	shoshana@sickkids.ca	http://wodaklab.org/iRefWeb/interaction/show/$1				True				IREFWEB										irefweb	irefweb				300		irefweb	r3d100012725										
iresite	Database of experimentally verified IRES structures	http://www.iresite.org	The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure.		322	martin.pospisek@natur.cuni.cz	http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1				False												nbdc01752									iresite											
iro	Insect Resistance Ontology			^\d{7}$	0000008		https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1				True																																
isbn	International Standard Book Number	http://www.worldcat.org/	The International Standard Book Number (ISBN) is for identifying printed books.	^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$	9789211613865		https://www.worldcat.org/isbn/$1			ISBN-10|ISBN-13	False				ISBN-13						2634				isbn	isbn						isbn											
isced1997	International Standard Classification of Education, 1997 Edition	https://ec.europa.eu/eurostat/statistics-explained/index.php?title=International_Standard_Classification_of_Education_(ISCED)	ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems.		1		https://w3id.org/kim/isced-1997/level$1				False																																
isced2011	International Standard Classification of Education, 2011 Edition	https://ec.europa.eu/eurostat/statistics-explained/index.php?title=International_Standard_Classification_of_Education_(ISCED)	ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems.		1		https://w3id.org/kim/isced-2011/level$1				False																																
isced2013	International Standard Classification of Education, 2013 Edition	https://ec.europa.eu/eurostat/statistics-explained/index.php?title=International_Standard_Classification_of_Education_(ISCED)	ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems.		n0021		https://w3id.org/kim/isced-2013/$1				False																								isced								
ised	Influenza Sequence and Epitope Database	http://influenza.korea.ac.kr	ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea.		AY209920						False																					ised											
isfinder	Insertion sequence elements database	http://www-is.biotoul.fr/i	ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.	^IS\w+(\-\d)?$	ISA1083-2	patricia.siguier@univ-tlse3.fr	https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1				True				ISFINDER								nbdc00510		isfinder	isfinder						isfinder											
isni	International Standard Name Identifier	http://www.isni.org	"ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.

The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."	^[0-9]{15}[0-9X]{1}$	000000012281955X		http://www.isni.org/isni/$1				False			20464											isni	isni												P213	Q423048				
iso.3166	ISO 3166-1 Country Code	https://www.iso.org/iso-3166-country-codes.html	An identifier for a country in numeric format per ISO 3166-1	^\d+$	554		https://data.who.int/countries/$1				False																											P299					
iso.639-3	ISO 639 3-Letter Language Code	https://iso639-3.sil.org/	Since the introduction of ISO 639-3 in 2007, access to language information has increased tremendously. The code set initially adopted as ISO639-3:2007 was based on a harmonization of ISO 639-2 with the code set of SIL’s Ethnologue 15th edition and languages from Linguist List to form a comprehensive set of code elements for world languages.  SIL International, the Language Coding Agency for 639-3, relies on the contributions of linguists, language coding experts, and language users around the world to maintain and improve the code set through the change request process defined in the ISO 639 standard. [from homepage]		spa		https://iso639-3.sil.org/code/$1				False											1.0.639.3																					
iso15926	ISO 15926-14	https://15926.org/home/	The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)		activityBoundOf		http://standards.iso.org/iso/15926/part14/$1				False																																
isrctn	International Clinical Trials Registry Platform	https://www.isrctn.com	The International Clinical Trials Registry Platform, originally called International Standard Randomised Controlled Trial Number (ISRCTN) registry, is a primary clinical study registry recognised by the World Health Organisation (WHO) and the International Committee of Medical Journal Editors (ICMJE) that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)	^ISRCTN\d+$	ISRCTN10175490		https://www.isrctn.com/$1				False																																
issn	International Standard Serial Number	https://portal.issn.org	The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.	^\d{4}-\d{3}[\dX]$	0745-4570		https://portal.issn.org/resource/ISSN/$1				False				ISSN										issn	issn																	
istransbase	ISTransbase	https://istransbase.scbdd.com/	ISTransbase is a highly reliable and accessible database that focuses on inhibitors and substrates of drug transporters, offering a wealth of vital information encompassing experimental methods, transport parameters, and references.		IST028	oriental-cds@163.com	https://istransbase.scbdd.com/database/trans/$1				False																																
itis	Integrated Taxonomic Information System	https://www.itis.gov/	Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world.	^\d+$	589462	itiswebmaster@itis.gov	https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1	https://w3id.org/biopragmatics/resources/itis/itis.owl.gz	https://w3id.org/biopragmatics/resources/itis/itis.obo		False			17791									nbdc00916										r3d100011213					P815	Q82575				
itmctr	International Traditional Medicine Clinical Trial Registry	http://itmctr.ccebtcm.org.cn	The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)	^ITMCTR\d+$	ITMCTR2023000002						False																																
ito	Intelligence Task Ontology	https://openbiolink.github.io/ITOExplorer/	The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks.	^\d+$	01625	matthias.samwald@meduniwien.ac.at	https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1				False	ITO				ITO									ito																		
iuphar.family	IUPHAR family	http://www.guidetopharmacology.org/	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.	^\d+$	78		http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1			IUPHARfam	False				IUPHAR.FAMILY										iuphar.family	iuphar.family						iuphar.family											
iuphar.ligand	Guide to Pharmacology Ligand	http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.	^\d+$	1755		http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1			IUPHAR_LIGAND|IUPHAR_LIGAND_ID	False				IUPHAR.LIGAND										iuphar.ligand	iuphar.ligand										IupharLigand		P595					
iuphar.receptor	Guide to Pharmacology Target	http://www.guidetopharmacology.org/targets.jsp	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.	^\d+$	101	simon.harding@igmm.ed.ac.uk	http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1			IUPHAR_GPCR|IUPHARobj	False				IUPHAR.RECEPTOR										iuphar.receptor	iuphar.receptor											DB-0182	P5458					
ivdb	Influenza Virus Database	http://influenza.psych.ac.cn/	IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively.		E13035		http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1				False																					ivdb											
jaxmice	Jackson Laboratories Mouse Strain	https://mice.jax.org	A catalogue of mouse strains supplied by The Jackson Laboratory. Each identifier corresponds to a mouse strain.	^\d{6}$	004435		https://www.jax.org/strain/$1			jax|jaxMiceUID	False				JAXMICE										jaxmice	jaxmice								IMSR_JAX									
jcggdb	Japan Consortium for Glycobiology and Glycotechnology Database	http://jcggdb.jp/index_en.html	JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.	^JCGG-STR\d{6}$	JCGG-STR008690		http://jcggdb.jp/idb/jcggdb/$1				True				JCGGDB								nbdc01164		jcggdb	jcggdb																	
jcm	Japan Collection of Microorganisms	http://www.jcm.riken.go.jp/	The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.	^\d+$	17254		http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1				False				JCM										jcm	jcm						jcm											
jcrb	JRBC Cell Bank	https://cellbank.nibiohn.go.jp	Cell line collections (Providers)	^JCRB\d+$	JCRB1355		https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1				False						JCRB																										
jcsd	Japan Chemical Substance Dictionary	http://jglobal.jst.go.jp/en/	The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).	^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$	J55.713G		http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1			Nikkaji number|nikkaji	False				JCSD										jcsd	jcsd						nikkaji											
jecfa	Joint FAO/WHO Expert Committee on Food Additives	https://apps.who.int/food-additives-contaminants-jecfa-database	JECFA provides identifiers for flavors, food additives, contaminants, toxicants, and veterinary drugs. Each entry includes chemical details, acceptable or tolerable intake limits, and links to related reports and monographs.	^\d+$	2116	kpetersen@who.int					False																											P9557					
jgi.proposal	Joint Genome Institute Proposals	https://genome.jgi.doe.gov/portal/	Identifiers for proposals/projects at the Joint Genome Institute	^\d+$	502930	sewilson@lbl.gov	https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1				False																																
jrct	Japan Registry of Clinical Trials	https://jrct.niph.go.jp	This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)	^jRCT\w?\d+$	jRCTs041220087		https://jrct.niph.go.jp/en-latest-detail/$1				False																																
jstor	Digital archive of scholarly articles	http://www.jstor.org/	JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.	^\d+$	3075966		http://www.jstor.org/stable/$1				False				JSTOR										jstor	jstor																	
jws	JWS Online	http://jjj.bio.vu.nl/models/	JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.	^\w+$	achcar11	brettolivier@gmail.com	https://jjj.bio.vu.nl/models/$1				False				JWS										jws	jws						jws											
kaggle	Kaggle	https://kaggle.com	Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.	^[0-9a-zA-Z\-]+\/[0-9a-zA-Z\-]+$	nasa/kepler-exoplanet-search-results		https://www.kaggle.com/$1				False														kaggle	kaggle							r3d100012705										
kaken	e-Rad researcher number	https://nrid.nii.ac.jp/ja/search/?kw=	identifier for researchers in Japan used in government-based research funding (from 1980s)	^\d{8}$	00011461		https://nrid.nii.ac.jp/ja/nrid/10000$1				False																											P9776					
kclb	Korean Cell Line Bank	https://cellbank.snu.ac.kr/english	Cell line collections (Providers)		10020.2		https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1				False						KCLB																										
kcris	Korean Clinical Research Information Service	https://cris.nih.go.kr	"The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)
Note that the web page that resolves this trial does not correspond to the semantic space"	^KCT\d+$	KCT0008394						False																																
kdbirp	Kinetic Data of RNA-Protein Interactions Database	http://www.kdbirp.aiddlab.com	Identifiers represent RNA-protein interaction entries with quantitative kinetic data in the Kinetic Data of Biomolecular Interactions for RNA-Protein database (KDBI-RP), which is an open-access database cataloging association rates, dissociation rates, and equilibrium dissociation constants for RNA-protein interactions.	^\d+$	183	zengxian@fudan.edu.cn	http://www.kdbirp.aiddlab.com/detail/$1				False																																
kdsf.ffk	Interdisziplinäre Forschungsfeldklassifikation	https://github.com/KDSF-FFK/kdsf-ffk	Klassifikation für interdisziplinäre Forschungsfelder im Rahmen des Kerndatensatz Forschung		ErdeUndKosmos		https://w3id.org/kdsf-ffk/$1				False			20288																					kdsfffk								
kegg	Kyoto Encyclopedia of Genes and Genomes	http://www.kegg.jp/	Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.	^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$	hsa00190		http://www.kegg.jp/entry/$1			KEGG	True				KEGG			000409					nbdc00530		kegg	kegg				16							DB-0053						
kegg.brite	KEGG BRITE	https://www.genome.jp/kegg/brite.html	KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships.		ko00002		https://www.kegg.jp/brite/$1				False												nbdc00115									kegg.brite											
kegg.compound	KEGG Compound	https://www.genome.jp/kegg/ligand.html	KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.	^C\d+$	C12345	kanehisa@kuicr.kyoto-u.ac.jp	https://www.kegg.jp/entry/$1			KEGG COMPOUND|KEGG.COMPOUND	False				KEGG.COMPOUND						2605		nbdc00814		kegg.compound	kegg.compound						kegg.compound						P665			kegg		
kegg.dgroup	KEGG Drug Group	http://www.genome.jp/kegg/reaction/	"KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.

    Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.
    Structure - grouped as similar chemical structures having the same skeleton, etc.
    Target - grouped by drug targets
    Class - drug classes often representing similar mechanisms of action
    Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters

Chemical groups are often used for identifying essentially the same active ingredients of drugs in different countries."	^DG\d+$	DG00301					KEGG_DGROUP|KEGG_DRUG_GROUP	False																														kegg		
kegg.disease	KEGG Disease	http://www.genome.jp/kegg/disease/	The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.	^H\d+$	H00076		http://www.kegg.jp/entry/$1				False				KEGG.DISEASE								nbdc00813		kegg.disease	kegg.disease						kegg.disease									kegg		
kegg.drug	KEGG Drug	https://www.genome.jp/kegg/drug/	KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.	^D\d+$	D00123	kanehisa@kuicr.kyoto-u.ac.jp	https://www.kegg.jp/entry/$1			KEGG DRUG|KEGG.DRUG	False				KEGG.DRUG						2609		nbdc00812		kegg.drug	kegg.drug						kegg.drug						P665			kegg		
kegg.environ	KEGG Environ	http://www.genome.jp/kegg/drug/environ.html	KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.	^(ev\:)?E\d+$	ev:E00032		http://www.kegg.jp/entry/$1			KEGG.EDRUG	True				KEGG.ENVIRON								nbdc01059		kegg.environ	kegg.environ															kegg		
kegg.enzyme	KEGG Enzyme	http://www.genome.jp/dbget-bin/www_bfind?enzyme	KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links.				http://www.genome.jp/dbget-bin/www_bget?ec:$1				False																														kegg	ec	
kegg.genes	KEGG gene	http://www.genome.jp/kegg/genes.html	KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.	^\w+:[\w\d\.-]*$	bsu:BSU01340	kanehisa@kuicr.kyoto-u.ac.jp	http://www.kegg.jp/entry/$1				False				KEGG.GENES										kegg.genes	kegg.genes						kegg.gene						P665			kegg		
kegg.genome	KEGG genome	http://www.genome.jp/kegg/catalog/org_list.html	KEGG Genome is a collection of organisms whose genomes have been completely sequenced.	^(T0\d+|\w{3,5})$	T06648	kanehisa@kuicr.kyoto-u.ac.jp	http://www.kegg.jp/entry/$1	https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.owl	https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.obo	kegg_genome|kegg_genomes	False				KEGG.GENOME								nbdc00816		kegg.genome	kegg.genome						kegg.genome						P665			kegg		
kegg.glycan	KEGG Glycan	https://www.genome.jp/kegg/glycan/	KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.	^G\d+$	G00123	kanehisa@kuicr.kyoto-u.ac.jp	https://www.kegg.jp/entry/$1				False				KEGG.GLYCAN						2613		nbdc00533		kegg.glycan	kegg.glycan						kegg.glycan									kegg		
kegg.ligand	KEGG LIGAND	http://www.genome.ad.jp/kegg/docs/upd_ligand.html					http://www.genome.jp/dbget-bin/www_bget?cpd:$1				True																														kegg		
kegg.metagenome	KEGG Metagenome	http://www.genome.jp/kegg/catalog/org_list3.html	The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.	^T3\d+$	T30002	kanehisa@kuicr.kyoto-u.ac.jp	http://www.kegg.jp/entry/$1				False				KEGG.METAGENOME										kegg.metagenome	kegg.metagenome						kegg.metagenome									kegg		
kegg.module	KEGG Module	http://www.kegg.jp/kegg/module.html	KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.	^([a-z]{3,5}_)?M\d{5}$	M00002		http://www.kegg.jp/entry/$1				False				KEGG.MODULE								nbdc01428		kegg.module	kegg.module															kegg		
kegg.orthology	KEGG Orthology	http://www.genome.jp/kegg/ko.html	KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.	^K\d+$	K00001		http://www.kegg.jp/entry/$1				False				KEGG.ORTHOLOGY										kegg.orthology	kegg.orthology						kegg.orthology									kegg		
kegg.pathway	KEGG pathway	https://www.genome.jp/kegg/pathway.html	KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.	^\w{2,4}\d{5}$	rsk00410	kanehisa@kuicr.kyoto-u.ac.jp	https://www.kegg.jp/pathway/$1			KEGG-path|KEGG_PATHWAY	False				KEGG.PATHWAY						2343				kegg.pathway	kegg.pathway						kegg.pathway						P665					
kegg.rclass	KEGG Reaction Class	http://www.genome.jp/kegg/reaction/	KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns.	^RC\d+$	RC00001					KEGG_RCLASS|KEGG_REACTION_CLASS	False												nbdc00860																		kegg		
kegg.reaction	KEGG Reaction	https://www.genome.jp/kegg/reaction/	KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.	^R\d+$	R00100	kanehisa@kuicr.kyoto-u.ac.jp	https://www.kegg.jp/entry/$1			KEGG_REACTION	False				KEGG.REACTION						2608		nbdc00818		kegg.reaction	kegg.reaction						kegg.reaction						P665			kegg		
kerafast	Kerafast cell lines	https://www.kerafast.com/	Cell line collections (Providers)		EJH014		https://www.kerafast.com/Search?SearchTerm=&quot;$1&quot;				False						Kerafast																										
kestrelo	KESTREL Ontology	https://gitlab.pnnl.gov/kestrel/kestrel_ontology	An ontology for harmonizing and extending severeral existing resources in the vaccine and immunology domains	^\d{7}$	0000001	lindsey.anderson@pnnl.gov	http://purl.obolibrary.org/obo/kestrelo_$1				False																																
kim.amb	Allgemeines Metadatenprofil für Bildungsressourcen	https://dini-ag-kim.github.io/amb/20231019/	A cross-sectoral metadata profile for describing teaching and learning resources, primarily based on [schema.org](https://schema.org) and the Learning Resource Metadata Initiative LRMI, and additionally utilizing elements of the Simple Knowledge Organization System SKOS. A JSON-LD11-compliant data structure is defined in the form of this HTML specification, including a JSON schema against which data can be automatically checked for conformity with the profile.	^[a-z]\w+$	conditionsofaccess		https://dini-ag-kim.github.io/amb/20231019/#$1				False																																
kim.conditionsofaccess	Conditions of Access	https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/index.html	Identifiers describing conditions of access to an object (login) as defined by the [OER metadata group](https://oerworldmap.org/resource/urn:uuid:fd06253e-fe67-4910-b923-51db9d27e59f).	^login|no_login$	no_login		https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/$1.html				False																																
kim.educationlevel	KIM Education Level	https://w3id.org/kim/educationalLevel/	A controlled vocabulary for education levels, such as primary eduation, secondary education, and post-secondary education		6		https://w3id.org/kim/educationalLevel/level_$1				False																								educationallevel								
kim.esv	Educational Sectors Vocabulary	https://w3id.org/kim/educationalLevel/	This is a vocabulary for educational sectors as used in the OER World Map (https://oerworldmap.org)		earlyChildhood		https://w3id.org/class/sectors/$1				False																																
kim.hcrt	Higher Education Resource Types	https://w3id.org/kim/hcrt/scheme.html	A controlled vocbualry of higher education resource types		simulation		https://w3id.org/kim/hcrt/$1				False																								hcrt								
kim.hochschulfaechersystematik	German University Subject Classification System	https://w3id.org/kim/hochschulfaechersystematik/scheme	A classification of subjects in Hochschule (universities of applied sciences)		n2		https://w3id.org/kim/hochschulfaechersystematik/$1				False																								hfs								
kim.license	KIM License	https://w3id.org/kim/license/	A vocabulary describing licenses for data and code		nonCommercial		https://w3id.org/kim/license/$1				False																																
kim.lp	Lehrplan Ontology	https://github.com/dini-ag-kim/school-curriculum-pg	This ontology is a formal representation that captures the fundamental concepts and their relationships to one another in the field of curriculum design and implementation of the German school system.	^\d{7}$	0000141		https://w3id.org/lehrplan/ontology/LP_$1	https://github.com/dini-ag-kim/school-curriculum-pg/raw/refs/heads/main/lp.owl			False																																
kim.schularten	KIM German School Types	https://github.com/dini-ag-kim/schularten	This SKOS vocabulary describes types of primary and secondary schools in Germany, such as Grundschule, Gymnasium, and Realschule. This does not include post-secondary education such as universities or hochschulen.		s02		https://w3id.org/kim/schularten/$1				False																																
kim.schulfaecher	KIM School Subjects	https://github.com/dini-ag-kim/schulfaecher	A vocabulary describing subjects taught in German primary and secondary school (not university/hochschulen), such as German, math, and art.		s1000		http://w3id.org/kim/schulfaecher/$1				False																																
kit.mtxx	Vocabulary of Materials Tribology Lab at KIT	https://gitlab.com/linked-tribological-data/vocabulary-materials-tribology-lab-at-kit	Objects of this class contain a self-bound collection of mass bearing particles.		002_xxx_xxx-a228d7e065dc45b4b5ab48876aab7228-vp		https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/$1				False																								kitmtxx								
knapsack	KNApSAcK	http://www.knapsackfamily.com/KNApSAcK/	"KNApSAcK provides information on metabolites and the
taxonomic class with which they are associated."	^C\d{8}$	C00000001		http://www.knapsackfamily.com/knapsack_core/information.php?word=$1			KNApSAcK	False				KNAPSACK								nbdc00545		knapsack	knapsack												P2064					
kpio	Key Performance Indicator ontology	http://bimerr.iot.linkeddata.es/def/key-performance-indicator	The Key Performance Indicator module aims to model the metrics defined at the beginning of building renovation activities to monitor the conformance with typical requirements related to energy efficient buildings.		Goal		http://bimerr.iot.linkeddata.es/def/key-performance-indicator#$1				False																								kpi								
kupo	Kidney and Urinary Pathway Ontology	http://www.kupkb.org/		^\d{7}$	0001009						True																																
kyinno	KYinno cell lines	https://www.kyinno.com/	Cell line collections (Providers)		KC-0979		https://www.kyinno.com/?s=$1				False						KYinno																										
labo	clinical LABoratory Ontology	https://github.com/OpenLHS/LABO	LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.	^\d{7}$	0000124	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/LABO_$1				False	LABO				LABO											labo	labo	LABO										Q81661673				
langual	Langua aLimentaria Thesaurus	https://www.langual.org	"Langual stands for ""langua alimentaria"" or ""language of food"". it is an automated method for describing, capturing and retrieving data about food. the work on langual was started in the late 1970's by the center for food safety and applied nutrition (cfsan) of the united states food and drug administration as an ongoing co-operative effort of specialists in food technology, information science and nutrition. the thesaurus provides a standardized language for describing foods, specifically for classifying food products for information retrieval. langual is based on the concept that: - any food (or food product) can be systematically described by a combination of characteristics - these characteristics can be categorized into viewpoints and coded for computer processing - the resulting viewpoint/characteristic codes can be used to retrieve data about the food from external databases"	^B\d+$	B2067		https://www.langual.org/langual_thesaurus.asp?termid=$1				False																																
lattes	Lattes Platform number	https://lattes.cnpq.br	number for the Lattes Platform entry on the person or group. Relationship between entry and subject must be supported by a source.	^\d{16}$	0061106995455595		https://lattes.cnpq.br/$1				False																											P1007					
lbctr	Lebanon Clinical Trials Registry	https://lbctr.moph.gov.lb/	The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)	^LBCTR\d+$	LBCTR2023015204						False																																
lbo	Livestock Breed Ontology	http://bioportal.bioontology.org/ontologies/LBO	A vocabulary for cattle, chicken, horse, pig, and sheep breeds.	^\d{7}$	0000487	caripark@iastate.edu	https://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_$1	https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.owl	https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.obo		False	LBO	LBO			LBO												lbo															
lccn	Library of Congress Control Number	https://lccn.loc.gov	LCCN Permalinks are persistent URLs for bibliographic records in the LC Catalog and authority records in LC Authorities. These links are constructed using the record's LCCN (or Library of Congress Control Number), an identifier assigned by the Library of Congress to bibliographic and authority records. LCCN Permalinks are also available for citation records in the Handbook for Latin American Studies (HLAS). [from homepage]	^\d+$	2011488555		https://lccn.loc.gov/$1				False																																
lcsh	Library of Congress Subject Headings	https://id.loc.gov/authorities	Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)	^\w{1,2}\d{8,10}$	nb2018006591		https://id.loc.gov/authorities/$1			lcnaf|lcnafid	False			454																								P244	Q17109002				
lcsh.genreforms	Library of Congress Subject Headings - Genre Forms	https://id.loc.gov/authorities	A subset of Library of Congress (LOC) subject headings		gf2018026088		http://id.loc.gov/authorities/genreForms/$1				False																														lcsh		
ldp	Linked Data Platform Vocabulary	http://www.w3.org/TR/ldp/	A set of best practices and simple approach for a read-write Linked Data architecture, based on HTTP access to web resources that describe their state using the RDF data model.		Resource						False													ldp																ldp			
leafsnap	Leafsnap	http://leafsnap.com/	identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide		Amelanchier laevis		http://leafsnap.com/species/$1/				False																											P10538					
lei	Global LEI Index	https://www.gleif.org/	Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.	^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$	HWUPKR0MPOU8FGXBT394		https://www.gleif.org/lei/$1				False														lei	lei																	
lepao	Lepidoptera Anatomy Ontology	https://github.com/insect-morphology/lepao	The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research.	^\d{7}$	0000005	lagonzalezmo@unal.edu.co	http://purl.obolibrary.org/obo/LEPAO_$1				False	LEPAO				LEPAO											lepao	lepao	LEPAO										Q113012667				
lexvo.ontology	Lexvo Ontology	http://lexvo.org	The data model underlying lexvo		Language		http://lexvo.org/ontology#$1	http://lexvo.org/ontology		lvont	False													lvont																lvont			
lgai.cede	LG Chemical Entity Detection Dataset (LGCEDe)	https://www.lgresearch.ai	LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR).	^LGCEDe-S-\d{9}$	LGCEDe-S-000002244		https://s3.us-east-2.amazonaws.com/lg.cede/$1				False														lgai.cede																		
lgic	Ligand-Gated Ion Channel database	https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php	The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.	^\w+$	5HT3Arano		https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php				True				LGIC										lgic	lgic						lgicdb											
licebase	LiceBase	https://licebase.org	Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon,  significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.	^[A-Za-z0-9\-\/]+$	EMLSAT00000003403	Inge.Jonassen@uib.no	https://licebase.org/?q=$1				False				LICEBASE								nbdc02217		licebase	licebase							r3d100013547										
lifestylefactors	Lifestyle Factors Ontology	https://bioportal.bioontology.org/ontologies/LSFO	In this ontology, we defined nine distinct categories that encompass various aspects of lifestyle factors (LSFs), creating a unified Lifestyle Factors Ontology (LSFO) across these categories. Within the context of lifestyle, we have identified nine categories that can collectively describe all LSFs, namely: 1-Nutrition, a category that covers different branches such as dietary habits, food groups, food processing and preparation, macronutrients, and micronutrients, among others. 2-Socioeconomic factors, which includes social and economic conditions such as income, wealth, education and socioeconomic status. 3-Environmental exposures, includes exposure to various environmental factors, such as air pollution, water quality, and workplace hazards, that can impact an individual’s health. 4-Substance use, covers concepts such as smoking, as well as illicit drug use. 5-Physical activities, includes regular exercise and physically demanding activities like leisure time, occupational, and household physical activities. 6-Non-physical leisure time activities, describes any activity an individual might engage in during their free time that is not a physical activity. 7-Personal care products and cosmetic procedures, covers activities related to hygiene, use of cosmetic and cleaning products as well as invasive procedures that people undergo to improve their appearance, such as cosmetic surgery. 8-Sleep, covers sleep quality, stages, and habits. 9-Mental health practices, includes the behaviors and habits related to maintaining good mental health and emotional well-being such as meditation, and psychotherapy.		0000015	lars.juhl.jensen@cpr.ku.dk	http://purl.obolibrary.org/obo/LFID_$1				False					LSFO												lifestylefactors															
ligandbook	LigandBook	https://ligandbook.org/	Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.	^[0-9]+$	785		https://ligandbook.org/package/$1				False														ligandbook	ligandbook																	
ligandbox	LigandBox	http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en	LigandBox is a database of 3D compound structures.  Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.	^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$	D00001		http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1				False				LIGANDBOX								nbdc00551		ligandbox	ligandbox																	
ligandexpo	Ligand Expo	http://ligand-depot.rutgers.edu/index.html	Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.	^(\w){3}$	ABC	jwest@rcsb.rutgers.edu	http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid				False				LIGANDEXPO								nbdc01864		ligandexpo	ligandexpo				154		ligandexpo											
ligea	Cancer cell LInes GEne fusions portAl	http://hpc-bioinformatics.cineca.it/fusion/main	Polymorphism and mutation databases		CCLE_867		http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1				False						LiGeA																										
limore	Liver Cancer Model Repository	https://www.picb.ac.cn/limore/home	Cell line databases/resources		Li7		https://www.picb.ac.cn/limore/cellLines/single?para=$1				False						LIMORE																										
lincs.cell	LINCS Cell	http://lincsportal.ccs.miami.edu/cells/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to  create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.	^(LCL|LDC|ES|LSC|LPC)-\d+$	LCL-2085		http://lincsportal.ccs.miami.edu/cells/#/view/$1			LINCS_LDP	False				LINCS.CELL		LINCS_LDP								lincs.cell	lincs.cell																	
lincs.data	LINCS Data	http://lincsportal.ccs.miami.edu/datasets/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).	^[EL]D[SG]-\d+$	LDS-1110		http://lincsportal.ccs.miami.edu/datasets/#/view/$1				False				LINCS.DATA										lincs.data	lincs.data																	
lincs.protein	LINCS Protein	http://lincs.hms.harvard.edu/db/proteins/	The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.	^\d+$	200282		https://lincs.hms.harvard.edu/db/proteins/$1				False				LINCS.PROTEIN										lincs.protein	lincs.protein																	
lincs.smallmolecule	LINCS Small Molecule	http://lincsportal.ccs.miami.edu/SmallMolecules/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).	^LSM-\d+$	LSM-6306		http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1			lincs	False				LINCS.SMALLMOLECULE										lincs.smallmolecule	lincs.smallmolecule																	
linguist	Linguist	https://github.com/github/linguist	Registry of programming languages for the Linguist program for detecting and highlighting programming languages.	^[a-zA-Z0-9 +#'*]+$	Python		https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1				False														linguist																		
linguist.gold	Genderal Ontology for Linguistic Description	https://linguistlist.org/gold/			Term		https://lambdamusic.github.io/ontospy-examples/gold-2010owl/class-gold$1.html				True																																
linkedin	LinkedIn personal profile ID	https://www.linkedin.com	identifier for a person, on the LinkedIn website	^[\w0-9\-&_'’\.]+$	deborahlehr		https://www.linkedin.com/in/$1				False																											P6634					
linkml	LinkML	https://linkml.io/linkml-model/docs/SchemaDefinition/	Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks.		SchemaDefinition	cjmungall@lbl.gov	https://w3id.org/linkml/$1				False																																
lipidbank	LipidBank	http://lipidbank.jp/index.html	LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.	^\w+\d+$	BBA0001	e-yasugi@umin.ac.jp	https://lipidbank.jp/data/$1.cdx				True				LIPIDBANK						2665		nbdc00126		lipidbank	lipidbank						lipidbank											
lipidmaps	LIPID MAPS	https://lipidmaps.org	The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.	^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$	LMPR0102010012	edennis@ucsd.edu	http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1			LIPID MAPS|LIPID_MAPS_class|LIPID_MAPS_instance	False				LIPIDMAPS			000564			2625		nbdc02669		lipidmaps	lipidmaps		lipidmaps		503		lipidmaps	r3d100012315			Lipidmaps		P2063					
lipro	Lipid Ontology		An ontology representation of the LIPIDMAPS nomenclature classification.			bakerc@unb.ca	http://purl.obolibrary.org/obo/LIPRO_$1				True	LIPRO			LIPRO	LIPRO											lipro												Q114677891				
listdb.onto	ListDB Ontology	https://w3id.org/listdb/onto	"This is an ontology draft for the description of metadata of traffic observations, in particular video recordings of road traffic. The traffic observations are e.g. used to design test scenarios for the effectiveness assessment of automated driving systems. 

The ontology draft resulted from an exchange of the Chair of Automobile Engineering at TU Dresden (https://tu-dresden.de/bu/verkehr/iad/kft?set_language=en) with representatives of NFDI4Ing (Community Cluster 4.4, Archetype Golo, Base Services S3) and FID move in NFDI4Ing's Special Interest Group ""Metadata and Ontologies"". An essential part of that meeting was the presentation of the reseaerch data management approach at the Chair of Automobile Engineering, in particular its tooling, its metadata approach and its workflow.

Traffic observations are managed with ListDB, a solution combined of a SharePoint instance and a virtual machine for data servicing . An accompanying Codebook defines relevant metadata that should be provided for each road traffic observation. ListDB is currently used internally within TU Dresden, but is intentended to be hosted publicly until spring 2023. 

The ontology draft is, in fact, based on the Codebook (v. 1.0.0.) and an attempt to make a machine-readable document out of it, applying standards from the Semantic Web Stack (RDF(S) and OWL). The draft is constantly being developed further in this context."		C0000000001		https://w3id.org/listdb/onto#$1				False																								listdb								
lncbook	LncBook	https://ngdc.cncb.ac.cn/?lang=en	"LncBook accommodates a high-quality collection of human lncRNA genes and transcripts, and incorporates their abundant annotations at different omics levels, thereby enabling users to decipher functional signatures of lncRNAs in human diseases and different biological contexts.

"	^HSALNG\d{7}$	HSALNG0006197		https://ngdc.cncb.ac.cn/lncbook/gene?geneid=$1				False												nbdc02541		lncbook																		
lncipedia	LNCipedia	https://lncipedia.org	A comprehensive compendium of human long non-coding RNAs		SNHG3	pieter.mestdagh@ugent.be					False																																
loc.fdd	Library of Congress Format Description Document	https://www.loc.gov/preservation/digital/formats/fdd/	The digital content format descriptions accessible here provide specific information about individual formats and their characteristics. Each description provides moderately detailed information and citations. Planned for inclusion are a wide variety of formats: file formats, file-format classes, bitstream structures and encodings, and the mechanisms used to compress files or bitstreams. Inclusion of a description for a format does not imply that the format is preferred or acceptable for Library of Congress collections. [from homepage]	^fdd\d+$	fdd000613		https://www.loc.gov/preservation/digital/formats/fdd/$1				False																																
loc.relator	Library of Congress Relator	http://id.loc.gov/vocabulary/relators	Relator terms and their associated codes designate the relationship between an agent and a bibliographic resource.		arc		https://id.loc.gov/vocabulary/relators/$1				False																																
loc.resourcetype	Library of Congress Resource Types Scheme	https://id.loc.gov/vocabulary/resourceTypes.html	A controlled vocabulary of media resources, such as audio, cartographic, manuscript, multimedia, etc.		dig		http://id.loc.gov/vocabulary/resourceTypes/$1				False																																
locn	ISA Programme Location Core Vocabulary	http://www.w3.org/ns/locn	The ISA Programme Location Core Vocabulary provides a minimum set of classes and properties for describing any place in terms of its name, address or geometry. The vocabulary is specifically designed to aid the publication of data that is interoperable with EU INSPIRE Directive.		Address						False													locn																locn			
log	SWAP Logic Ontology	http://www.w3.org/2000/10/swap/doc/CwmBuiltins	"Une ontologie ""historique"" utilisée par l'outil en ligne de commande cwm, au temps des balbutiements du web sémantique (~ 2000 - 2003 ?)"		dtlit						False													log																log			
loggerhead	Loggerhead nesting	http://www.mesquiteproject.org/ontology/Loggerhead/index.html				peteremidford@yahoo.com	http://purl.obolibrary.org/obo/LOGGERHEAD_$1				True				LOGGERHEAD												loggerhead												Q114677892				
loinc	Logical Observation Identifiers Names and Codes	https://loinc.org/	The international standard for identifying health measurements, observations, and documents.	^(\d|\w)+-\d$	LL379-9	loinc@regenstrief.org	https://loinc.org/$1			LNC	False	LOINC		1897		LOINC						2.16.840.1.113883.6.1																P4338	Q502480				
lonza	Lonza	https://knowledge.lonza.com	Contains information about cells and data sheets related to transfection.	^\d+$	968		https://knowledge.lonza.com/cell?id=$1				False						Lonza																										
loop	Loop ID	https://loop.frontiersin.org/	identifier for a person, in the Loop database of researcher impact	^[1-9]\d*$	1859		https://loop.frontiersin.org/people/$1				False																											P2798					
loqate	The localization and quantitation atlas of the yeast proteome	http://www.weizmann.ac.il/molgen/loqate/	The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library		1001	maya.schuldiner@weizmann.ac.il	http://www.weizmann.ac.il/molgen/loqate/gene/view/$1				False																					loqate											
lotus	LOTUS Initiative for Open Natural Products Research	https://lotus.naturalproducts.net	LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.	^LTS\d{7}$	LTS0004651	adriano.rutz@ik.me	https://lotus.naturalproducts.net/compound/lotus_id/$1				False																												Q104225190				
lpt	Livestock Product Trait Ontology	https://github.com/AnimalGenome/livestock-product-trait-ontology	The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.	^\d+$	0000156	caripark@iastate.edu	http://purl.obolibrary.org/obo/LPT_$1	https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.owl	https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.obo		False	LPT	LPT		LPT	LPT																											
lrg	Locus Reference Genomic	http://www.lrg-sequence.org/	A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.	^\d+$	1		http://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml				False				LRG							2.16.840.1.113883.6.283	nbdc02566		lrg	lrg										Lrg							
lrmi	Learning Resource Metadata Innovation Terms	https://www.dublincore.org/specifications/lrmi/lrmi_terms/2022-06-14/	The Learning Resource Metadata Innovation (LRMI) specification is a collection of classes and properties for markup and description of educational resources. The specification builds on the extensive vocabulary provided by Schema.org and other standards. LRMI terms not included in schema.org may nevertheless be used to augment and enrich Schema.org markup. (from homepage)		AlignmentObject		http://purl.org/dcx/lrmi-terms/$1				False																																
lrmi.alignmenttype	LRMI Alignment Type Vocabulary	https://www.dublincore.org/specifications/lrmi/concept_schemes/alignmentType/	A concept scheme that defines the types of relationships between a learning resource and a node in an educational framework.		assesses		http://purl.org/dcx/lrmi-vocabs/alignmentType/$1				False																																
lrmi.educationalaudiencerole	LRMI Educational Audience Role Vocabulary	https://www.dublincore.org/specifications/lrmi/concept_schemes/alignmentType/	A concept scheme that defines the primary or intended roles of the audience (beneficiary) of the resource being described.		mentor		http://purl.org/dcx/lrmi-vocabs/educationalAudienceRole/$1				False																																
lrmi.eduse	LRMI Educational Use Vocabulary	https://www.dublincore.org/specifications/lrmi/concept_schemes/educationalUse/	A concept scheme that enumerates the educational uses of a learning resource.		instruction		http://purl.org/dcx/lrmi-vocabs/educationalUse/$1				False																																
lrmi.interact	LRMI Interact Type Vocabulary	https://www.dublincore.org/specifications/lrmi/concept_schemes/interactivityType/	A concept scheme that defines the predominate interact mode of the learning resource being described.		active		http://purl.org/dcx/lrmi-vocabs/interactivityType/$1				False																																
lrmi.resourcetype	LRMI Learning Resource Type Concept Scheme	https://www.dublincore.org/specifications/lrmi/concept_schemes/learningResourceType/	A top-level concept scheme that enumerates different types of Learning Resource, designed to supplement existing more generic resource type schemes and which can support local extensions.		activityPlan		http://purl.org/dcx/lrmi-vocabs/learningResourceType/$1				False																																
lspci	Laboratory of Systems Pharmacology Compound	https://labsyspharm.github.io/lspci/	Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)	^\d+$	1		https://labsyspharm.github.io/lspci/$1				False																																
lter	Long Term Ecological Research Controlled Vocabulary	https://vocab.lternet.edu/vocab/vocab/index.php	Ecological terms	^\d+$	182		https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1				False																																
lw	LifeWatch Metadata Catalogue	https://metadatacatalogue.lifewatch.eu/	The LifeWatch Metadata Catalogues plays a crucial role in managing metadata for digital objects, including Datasets, Services, Workflows and Virtual Research Environments. This catalogue serves as the central repository, ensuring that resources are accessible and reusable by stakeholders.	^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$	6e3b1371-59d7-481a-9db4-cd0d0de98436		https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/$1				False														lw																		
m4i	Metadata4Ing	https://w3id.org/nfdi4ing/metadata4ing/	"The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a thorough framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the information contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of inheritance and modularity. ""Inheritance"" means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. Modularity means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research."	^[A-Za-z_0-9]*$	Method	dorothea.iglezakis@ub.uni-stuttgart.de	http://w3id.org/nfdi4ing/metadata4ing#$1				False			20402										m4i	m4i										m4i				Q111516803	m4i			
ma	Mouse adult gross anatomy	https://github.com/obophenotype/adult-mouse-anatomy-ontology	A structured controlled vocabulary of the adult anatomy of the mouse (Mus)	^\d+$	0002502	Terry.Hayamizu@jax.org	http://purl.obolibrary.org/obo/MA_$1				False	MA		1143	MA	MA									ma	ma	ma	ma	MA			ma							Q81661674				
macie	Mechanism, Annotation and Classification in Enzymes	https://www.ebi.ac.uk/thornton-srv/m-csa/about/	MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.	^M\d{4}$	M0001	gemma.l.holliday@gmail.com	https://www.ebi.ac.uk/thornton-srv/m-csa/search/?s=$1				False				MACIE						2641				macie	macie						macie											
maggot	Maggot	https://eng-bfp.bordeaux-aquitaine.hub.inrae.fr/resources/metabolome-platform	Sharing descriptive Metadata is the first essential step towards Open Scientific Data. With this in mind, Maggot was specifically designed to annotate datasets by creating a metadata file to attach to the storage space. Indeed, it allows users to easily add descriptive metadata to datasets produced within a collective of people (research unit, platform, multi-partner project, etc.). This approach fits perfectly into a data management plan as it addresses the issues of data organization and documentation, data storage and frictionless metadata sharing within this same collective and beyond.	^[A-Za-z0-9]+$	frim1		https://pmb-bordeaux.fr/maggot/metadata/$1				False														maggot																		
maizegdb.locus	MaizeGDB Locus	http://www.maizegdb.org/	MaizeGDB is the maize research community's central repository for genetics and genomics information.	^\d+$	25011	margaret.woodhouse@usda.gov	http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1			MaizeGDB	False				MAIZEGDB.LOCUS								nbdc00129		maizegdb.locus	maizegdb.locus						maizegdb	r3d100010795				DB-0058						
mamo	Mathematical modeling ontology	http://sourceforge.net/p/mamo-ontology/wiki/Home/	The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.	^\d{7}$	0000026	n.lenovere@gmail.com	http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1				True	MAMO			MAMO	MAMO									mamo	mamo	mamo	mamo	MAMO										Q113014441				
mampol	Mammalia Polymorphism Database	http://mampol.uab.es	The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches).		MAMpol005339		http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1				False																					mampol											
mao	Multiple alignment	http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html	An ontology for data retrieval and exchange in the fields of multiple DNA/RNA  alignment, protein sequence and protein structure alignment.	^\d{7}$	0000061	julie@igbmc.u-strasbg.fr	http://purl.obolibrary.org/obo/MAO_$1				True				MAO												mao					mao							Q114677893				
marc21	Machine-readable Cataloging (MARC) List for Languages	https://id.loc.gov/vocabulary/languages.html	MARC List for Languages provides three-character lowercase alphabetic strings that serve as the identifiers of languages and language groups. The codes are usually based on the first three letters of the English form or, in some cases, vernacular form of the corresponding language name. The codes are varied where necessary to resolve conflicts and are not intended to be abbreviations of a language name. When the name of a language is changed in the list, the original code is generally retained. The codes in this list are equivalent to those of ISO 639-2 (Bibliographic) codes and some codes from ISO 639-5, although the language name labels may differ. They are linked to the equivalent codes in ISO 639-2 and ISO 639-5 and the corresponding two-character codes in ISO 639-1. The list contains over 480 discrete codes. It is also searchable at: MARC Code List for Languages.		amh		https://id.loc.gov/vocabulary/languages/$1				False																																
markerdb	MarkerDB	https://markerdb.ca	MarkerDB is a freely available electronic database that attempts to consolidate information on all known clinical and pre-clinical biomarkers into a single resource. It provides identifiers for known clinical and pre-clinical biomarkers. Each entry provides detailed annotations, including biomarker descriptions, associated conditions, specificity, sensitivity, molecular structures, chromosomal locations, and clinical approval status.	^MDB\d{8}$	MDB00000001	dwishart@ualberta.ca					False																																
massbank	MassBank	http://www.massbank.jp	MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).	^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$	MSBNK-IPB_Halle-PB000166	tobias.schulze@ufz.de	https://massbank.jp/MassBank/RecordDisplay?id=$1				False				MASSBANK								nbdc00298		massbank	massbank												P6689					
massive	MassIVE	https://www.omicsdi.org/	MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.	^MSV\d+$	MSV000082131	miw023@ucsd.edu	https://www.omicsdi.org/dataset/massive/$1				False				MASSIVE										massive	massive											DB-0241						
mastodon	Mastodon	https://mastodon.social	address on the Mastodon decentralized social network (the form is 'user@server.domain' without a leading '@')	^[A-Za-z0-9_]+([A-Za-z0-9_\.]+[A-Za-z0-9_]+)?@[\d\w\.\-]+[0-9a-z]+$	jz@mamot.fr		https://fedirect.toolforge.org/?id=$1				False																											P4033					
mat	Minimal Anatomical Terminology		Minimal set of terms for anatomy	^\d{7}$	0000000	j.bard@ed.ac.uk	http://purl.obolibrary.org/obo/MAT_$1				True	MAT			MAT	MAT											mat												Q114677894				
mathmoddb	MathModDB Ontology	https://github.com/mardi4nfdi/MathModDB	This is the MathModDB Ontology for documenting mathematical models.		ComputationalTask		https://mardi4nfdi.de/mathmoddb#$1				False																								mathmoddb								
matrixdb	MatrixDB	http://matrixdb.univ-lyon1.fr/	MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides		MULT_4_VAR1_bovine	sylvie.ricard-blum@univ-lyon1.fr	http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1				False												nbdc01222							298		matrixdb	r3d100010672										
matrixdb.association	MatrixDB Association	https://matrixdb.univ-lyon1.fr/	MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$	P00747__P07355		https://matrixdb.univ-lyon1.fr/association/$1				False				MATRIXDB.ASSOCIATION										matrixdb.association	matrixdb.association																	
mavedb	Multiplexed Assays of Variant Effect Database	https://www.mavedb.org	Some IDs may represent experiment sets, e.g. https://www.mavedb.org/#/experiment-sets/urn:mavedb:00000011 Others represent genomic regions (specifically deep mutational scans thereof) e.g. https://www.mavedb.org/#/experiment-sets/urn:mavedb:00000011-a	^\S+$	00000011-a	alan.rubin@wehi.edu.au	https://www.mavedb.org/#/experiments/urn:mavedb:$1				False																																
maxo	Medical Action Ontology	https://github.com/monarch-initiative/MAxO	An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.	^\d{7}$	0000008	Leigh.Carmody@jax.org	http://purl.obolibrary.org/obo/MAXO_$1				False	MAXO				MAXO									maxo		maxo	maxo	MAXO										Q113012668				
mba	Mouse Brain Atlas	https://mouse.brain-map.org	A controlled vocabulary to support the study of transcription in the mouse brain	^\d+$	688	cellsemantics@gmail.com	https://purl.brain-bican.org/ontology/mbao/MBA_$1		https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-mba.obo		False					ABA-AMB												mba															
mcc	Cell Line Ontology [derivative]	http://www.molecularconnections.com	Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.		ThoracicArtery	usha@molecularconnections.com	http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1				True					MCCL																											
mco	Microbial Conditions Ontology	https://github.com/microbial-conditions-ontology/microbial-conditions-ontology	Microbial Conditions Ontology is an ontology...	^\d+$	0000858	citlalli.mejiaalmonte@gmail.com	http://purl.obolibrary.org/obo/MCO_$1				False	MCO				MCO											mco	mco	MCO										Q81661676				
mcro	Model Card Report Ontology	https://github.com/UTHealth-Ontology/MCRO	An ontology representing the model card structure, he aim of this work is to describe machine learning models to communicate information about specific details about the model (trade offs, intended users, licensing, etc.). 	^\d{7}$	0000001	muamith@utmb.edu	https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:$1				False	MCRO				MCRO									mcro		mcro	mcro	MCRO														
mdl	Molecular Design Limited Hash	https://en.wikipedia.org/wiki/Chemical_file_format#MDL_number	The MDL number contains a unique identification number for each reaction and variation. The format is RXXXnnnnnnnn. R indicates a reaction, XXX indicates which database contains the reaction record. The numeric portion, nnnnnnnn, is an 8-digit number. [wikipedia]	^\w{4}\d{8}$	MFCD00011659						False																																
mdm	Medical Data Models	https://medical-data-models.org/	The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.	^\d+$	4776	bernd.mueller@zbmed.de	https://medical-data-models.org/forms/$1				False	MDM			MDM	MDM									mdm	mdm							r3d100013816										
meddra	Medical Dictionary for Regulatory Activities Terminology	http://bioportal.bioontology.org/ontologies/MEDDRA	The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).	^\d+$	10015919	mssohelp@meddra.org	https://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1			MEDRA|MeDRA|MedDRA|Medical Dictionary for Regulatory Activities	False	MEDDRA		1237	MEDDRA	MEDDRA						2.16.840.1.113883.6.163	nbdc02564		meddra	meddra										Meddra		P3201	Q1539689				
medgen	Human Medical Genetics	https://www.ncbi.nlm.nih.gov/medgen/	MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.	^(CN)?\d{2,7}$	760050	megan.kane@nih.gov	https://www.ncbi.nlm.nih.gov/medgen/$1			medgen.uid	False				MedGen								nbdc02560		medgen	medgen										Medgen							
medgen.cid	MedGen Concept Unique ID	https://www.ncbi.nlm.nih.gov/medgen	This vocabulary is used internally inside MedGen to assign temporary identifiers to terms that will later get put in UMLS. Mappings between MedGen, MedGen CIDs, and UMLS can be found [here](https://ftp.ncbi.nlm.nih.gov/pub/medgen/MedGenIDMappings.txt.gz).	^CN\d+$	CN970821	megan.kane@nih.gov					False																																
mediadive.ingredient	MediaDive Ingredient	https://mediadive.dsmz.de/solutions	The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]	^\d+$	13	joerg.overmann@dsmz.de	https://mediadive.dsmz.de/ingredients/$1				False																																
mediadive.medium	MediaDive Medium	https://mediadive.dsmz.de/media	The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]	^\d+\w?$	77	joerg.overmann@dsmz.de	https://mediadive.dsmz.de/medium/$1				False														mediadive.medium																		
mediadive.solution	MediaDive Solution	https://mediadive.dsmz.de/solutions	The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]	^S\d+$	S6	joerg.overmann@dsmz.de	https://mediadive.dsmz.de/solutions/$1				False																																
medlineplus	MedlinePlus Health Topics	http://www.nlm.nih.gov/medlineplus/	MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.	^\d+$	002804	custserv@nlm.nih.gov	http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm				False	MEDLINEPLUS			MEDLINEPLUS	MEDLINEPLUS						2.16.840.1.113883.6.173	nbdc00836		medlineplus	medlineplus																	
meno	Mid-level Energy Ontology	https://github.com/stap-m/midlevel-energy-ontology	The midlevel energy ontology (MENO) is a BFO-based midlevel ontology. It comprises the concepts for energy qualities, energy-based dispositions and energy-driven transformation and transfer processes and their interrelations. It has the goal to provide an upper level structure for these concepts for energy-related domain ontologies.	^\d+$	01013	mirjam.stappel@uni-osnabrueck.de		https://github.com/stap-m/midlevel-energy-ontology/raw/refs/heads/dev/ontology/src/midlevel-energy.owl			False																																
merckindex.monograph	Merck Index Monograph	https://merckindex.rsc.org	A semantic space of small molecules		M2871		https://merckindex.rsc.org/monographs/$1				False																																
merckindex.reaction	Merck Index Reaction	https://merckindex.rsc.org	Chemical reactions in the Merck Index. This website doesn't exist anymore	^r\d+$	r376		https://www.rsc.org/Merck-Index/reaction/$1				True																																
merops.clan	MEROPS Clan	https://www.ebi.ac.uk/merops	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.		IA	ndr@ebi.ac.uk	https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1				False																																
merops.entry	MEROPS Entry	https://www.ebi.ac.uk/merops	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.	^[SCTAGMNUIX]{1,2}\d{2}\.([AB]\d{2}|\d{3})$	I31.952	ndr@ebi.ac.uk	https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1			merops.inhibitor	False				MEROPS.INHIBITOR						2629				merops.inhibitor	merops.inhibitor						merops											
merops.family	MEROPS Family	https://www.ebi.ac.uk/merops/	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.	^[SCTAGMNU]\d+$	S1	ndr@ebi.ac.uk	https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1				False				MEROPS.FAMILY										merops.family	merops.family																	
merriamwebster	Merriam Webster Dictionary	https://www.merriam-webster.com	Online Dictionary		buccal_gland		https://www.merriam-webster.com/dictionary/$1			merriam_webster	False																																
mesh	Medical Subject Headings	https://www.nlm.nih.gov/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.	^(C|D|Q)\d+$	C063233	custserv@nlm.nih.gov	https://meshb.nlm.nih.gov/record/ui?ui=$1	https://w3id.org/biopragmatics/resources/mesh/mesh.owl.gz	https://w3id.org/biopragmatics/resources/mesh/mesh.obo	MESH|MESHA|MESHC|MESHCS|MESHD|MESHPP|MESH_DESCRIPTOR_UI|MESH_SUPPLEMENTAL_RECORD_UI|MSH|MSH2010_2010_02_22|MeSH|meshUID	False	MESH		391	MESH	MESH	MeSH				1177	2.16.840.1.113883.6.177	nbdc00132		mesh	mesh		mesh				mesh				Mesh		P486	Q199897				
mesh.2012	MeSH 2012	http://www.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.	^[A-Za-z0-9]+$	17186		http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded				False				MESH.2012										mesh.2012	mesh.2012																mesh	
mesh.2013	MeSH 2013	http://www.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.	^[A-Za-z0-9]+$	17165		http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded				False				MESH.2013										mesh.2013	mesh.2013																mesh	
mesh.vocab	Medical Subject Headings Vocabulary	https://hhs.github.io/meshrdf/	Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump		term		http://id.nlm.nih.gov/mesh/vocab#$1				False																																
metabolights	MetaboLights Compound	https://www.ebi.ac.uk/metabolights/	MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.	^MTBL[CS]\d+$	MTBLS1		https://www.ebi.ac.uk/metabolights/$1				False				METABOLIGHTS		MetaboLights						nbdc02124		metabolights	metabolights							r3d100011556					P3890					
metacyc.compound	Metabolic Encyclopedia of metabolic and other pathways	https://metacyc.org	MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.	^[A-Za-z0-9+_.%-:]+$	CPD-10330	pkarp@ai.sri.com	https://metacyc.org/compound?orgid=META&id=$1			MetaCyc	False				METACYC.COMPOUND								nbdc00907		metacyc.compound	metacyc.compound				10			r3d100011294										
metacyc.pathway	Metabolic Encyclopedia for Pathway/Genome Databases	https://metacyc.org	"MetaCyc is a database of non-redundant, experimentally elucidated metabolic pathways and enzymes. It also contains reactions, chemical compounds, and genes. It stores predominantly qualitative information rather than quantitative data, although it does contain some quantitative data such as enzyme kinetics data.

MetaCyc is [curated](http://www.biocyc.org/glossary.shtml?sid=biocyc14-3908554027#Curation) from the scientific experimental literature according to an [extensive process](https://metacyc.org/MetaCycUserGuide.shtml#TAG:__tex2page_sec_4)]. The majority of pathways occurring in it are from microorganisms and plants. MetaCyc stores thousands of additional enzyme-catalyzed reactions that have not yet been assigned an EC number"		12DICHLORETHDEG-PWY	pkarp@ai.sri.com	https://metacyc.org/META/NEW-IMAGE?object=$1				False																																
metacyc.reaction	MetaCyc Reaction	https://metacyc.org	MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.	^[A-Za-z0-9+_.%-:]+$	RXN-14904	pkarp@ai.sri.com	https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1				False				METACYC.REACTION										metacyc.reaction	metacyc.reaction																	
metanetx.chemical	MetaNetX chemical	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.	^(MNXM\d+|BIOMASS|WATER)$	MNXM1723		https://www.metanetx.org/chem_info/$1				False				METANETX.CHEMICAL										metanetx.chemical	metanetx.chemical																	
metanetx.compartment	MetaNetX compartment	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.	^(MNX[CD]\d+|BOUNDARY|IN|OUT)$	MNXC15		https://www.metanetx.org/comp_info/$1				False				METANETX.COMPARTMENT										metanetx.compartment	metanetx.compartment																	
metanetx.reaction	MetaNetX reaction	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.	^(MNXR\d+|EMPTY)$	MNXR101574		https://www.metanetx.org/equa_info/$1				False				METANETX.REACTION										metanetx.reaction	metanetx.reaction																	
metatlas	Metabolic Atlas	https://metabolicatlas.org	A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis.	^(MAM\d{5}\w)|(MAR\d{5})$	MAM01234c	mihail.anton@chalmers.se	https://metabolicatlas.org/identifier/MetabolicAtlas/$1				False														metatlas																		
metatlas.metabolite	Metabolic Atlas Metabolite	https://metabolicatlas.org	A subspace of Metabolic Atlas for compartment-specific records for metabolites.	^MAM\d{5}\w$	MAM01234c	mihail.anton@chalmers.se	https://metabolicatlas.org/identifier/MetabolicAtlas/$1				False																														metatlas		
metatlas.reaction	Metabolic Atlas Reaction	https://metabolicatlas.org	A subspace of Metabolic Atlas for reactions.	^MAR\d{5}$	MAR11851	mihail.anton@chalmers.se	https://metabolicatlas.org/identifier/MetabolicAtlas/$1				False																														metatlas		
metlin	Metabolite and Tandem Mass Spectrometry Database	http://masspec.scripps.edu/	The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.	^\d{4}$	1455		http://metlin.scripps.edu/metabo_info.php?molid=$1				True				METLIN										metlin	metlin							r3d100012311										
metnetdb	Metabolic Network Exchange Database	http://www.metnetdb.org/MetNet_db.htm	The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another.		377369		http://metnetonline.org/browse_pathway2.php?pthID=$1				False																			234		metnetdb											
metpo	Microbial Ecophysiological Trait and Phenotype Ontology	https://github.com/berkeleybop/metpo	"METPO (Microbial Ecophysiological Trait and Phenotype Ontology) provides standardized terms for describing microbial phenotypes, growth characteristics, and culture conditions. It includes classes for growth media, temperature tolerances, pH tolerances, and relationships like ""grows in"" and ""does not grow in""."	^\d+$	1004005	mam@lbl.gov	https://w3id.org/metpo/$1	https://w3id.org/metpo/metpo.owl	https://w3id.org/metpo/metpo.obo		False	METPO				METPO																											
mex	Metabolome Express	https://www.metabolome-express.org/	A public place to process, interpret and share GC/MS metabolomics datasets.	^\d+$	36		https://www.metabolome-express.org/datasetview.php?datasetid=$1				False				MEX										mex	mex																	
mf	Mental Functioning Ontology	https://github.com/jannahastings/mental-functioning-ontology	The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.	^\d{7}$	0000091	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MF_$1				False	MF			MF	MF											mf	mf	MF										Q55118443				
mfmo	Mammalian Feeding Muscle Ontology	https://github.com/rdruzinsky/feedontology	The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.	^\d{7}$	0000208	druzinsk@uic.edu	http://purl.obolibrary.org/obo/MFMO_$1				True	MFMO			MFMO	MFMO											mfmo	mfmo	MFMO										Q81661681				
mfo	Medaka fish anatomy and development	http://ani.embl.de:8080/mepd/	A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, <i>Oryzias latipes</i>.	^\d{7}$	0000001	henrich@embl.de	http://purl.obolibrary.org/obo/MFO_$1				True	MFO			MFO	MFO											mfo					mfo							Q114677896				
mfoem	Emotion Ontology	https://github.com/jannahastings/emotion-ontology	An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.	^\d{6}$	000204	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MFOEM_$1				False	MFOEM			MFOEM	MFOEM											mfoem	mfoem	MFOEM										Q55118370				
mfomd	Mental Disease Ontology	https://github.com/jannahastings/mental-functioning-ontology	The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF).	^\d{7}$	0000046	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MFOMD_$1				False	MFOMD			MFOMD	MFOMD											mfomd	mfomd	MFOMD										Q55118439				
mge	Aclame	http://aclame.ulb.ac.be/	ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.	^\d+$	2		http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1			aclame	True				ACLAME						2631		nbdc00355		mge	mge						aclame											
mgi	Mouse Genome Informatics	http://www.informatics.jax.org/	The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.	^\d+$	6017782	joel.richardson@jax.org	http://www.informatics.jax.org/accession/MGI:$1	https://w3id.org/biopragmatics/resources/mgi/mgi.owl.gz	https://w3id.org/biopragmatics/resources/mgi/mgi.obo.gz	MGD|MGI	False				MGI		MGI				3274		nbdc00568		mgi	mgi						mgi	r3d100010266	MGI			DB-0060	P671					
mgnify.analysis	MGnify Analysis	https://www.ebi.ac.uk/metagenomics/	Analyses of microbiome data within MGnify	^MGYA\d+$	MGYA00002270		https://www.ebi.ac.uk/metagenomics/analyses/$1				False														mgnify.analysis																		
mgnify.proj	MGnify Project	https://www.ebi.ac.uk/metagenomics	MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.	^[A-Z]+[0-9]+$	ERP004492		https://www.ebi.ac.uk/metagenomics/projects/$1				False														mgnify.proj	mgnify.proj																	
mgnify.samp	MGnify Sample	https://www.ebi.ac.uk/metagenomics	The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.	^[A-Z]+[0-9]+$	SRS086444		https://www.ebi.ac.uk/metagenomics/samples/$1				False														mgnify.samp	mgnify.samp																	
mgnifygenome	MGnify Genome	https://www.ebi.ac.uk/metagenomics	"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional
profiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations."	^MGYG\d{9}(\.\d+)?$	MGYG000004903		https://www.ebi.ac.uk/metagenomics/genomes/$1				False														mgnify.genome																		
mgnifyprotein	MGnify Protein	https://www.ebi.ac.uk/metagenomics	"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional
profiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations."	^MGYP\d{12}$	MGYP000261684433		https://www.ebi.ac.uk/metagenomics/proteins/$1				False														mgnify.protein																		
mgnifystudy	MGnify Study	https://www.ebi.ac.uk/metagenomics	"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional
profiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations."	^MGYS\d{8}$	MGYS00006794		https://www.ebi.ac.uk/metagenomics/studies/$1				False														mgnify.study																		
mi	Molecular Interactions Controlled Vocabulary	https://github.com/HUPO-PSI/psi-mi-CV	The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.	^\d{4}$	0058	luana.licata@gmail.com	http://purl.obolibrary.org/obo/MI_$1			PSI-MI	False	MI			PSIMI	MI									mi	psimi	mi	mi	MI			psi.mi			mi				Q81661689				
miaa	Minimal Information About Anatomy ontology										True																																
miapa	Minimum Anformation About a Phylogenetic Analysis Ontology	http://www.evoio.org/wiki/MIAPA	"The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.

This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA."	^\d{7}$	0000010	hilmar.lapp@duke.edu	http://purl.obolibrary.org/obo/MIAPA_$1				False	MIAPA			MIAPA	MIAPA											miapa	miapa	MIAPA										Q81661690				
mibig	Minimum Information about a Biosynthetic Gene Cluster data repository	https://mibig.secondarymetabolites.org	MIBiG (Minimum Information about a Biosynthetic Gene Cluster) is a data repository and associated data standard designed to describe biosynthetic gene clusters involved in the production of specialized metabolites. It also stores data on measured biological activities and links to other resources such as NCBI, NPAtlas, and ChEBI. MIBiG is used as a reference database, knowledgebase, and training dataset for machine learning.	^BGC\d{7}$	BGC0000001	kblin@biosustain.dtu.dk	https://mibig.secondarymetabolites.org/go/$1				False																																
micro	Ontology of Prokaryotic Phenotypic and Metabolic Characters	https://github.com/carrineblank/MicrO	An ontology of prokaryotic phenotypic and metabolic characters	^\d{7}$	0002999	carrine.blank@umontana.edu	http://purl.obolibrary.org/obo/MICRO_$1				True	MICRO			MICRO												micro	micro	MICRO										Q81661692				
microscope	MicroScope	http://www.genoscope.cns.fr/agc/microscope	MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.	^\d+$	5601141	cmedigue@genoscope.cns.fr	http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1				False				MICROSCOPE										microscope	microscope							r3d100012928										
microsporidia	MicrosporidiaDB	http://microsporidiadb.org/micro/	MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	ECU03_0820i	oharb@upenn.edu	http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False				MICROSPORIDIA										microsporidia	microsporidia						microsporidia											
millipore	Merck Millipore (EMD Millipore)	https://www.merckmillipore.com/	Cell line collections (Providers)		SCC111		https://www.merckmillipore.com/catalogue/item/$1				False						Millipore																										
mimodb	MimoDB	http://immunet.cn/bdb/	MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.	^\d+$	1	hj@uestc.edu.cn	http://immunet.cn/bdb/index.php/mimoset/$1				False				MIMODB										mimodb	mimodb						mimodb											
minid	Minimal Viable Identifier	https://fair-research.org	Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.	^[A-Za-z0-9]+$	b97957	foster@uchicago.edu	https://hdl.handle.net/hdl:20.500.12582/$1				False				MINID										minid	minid																	
minid.test	MINID Test	https://fair-research.org	Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. 	^[A-Za-z0-9]+$	3SBPLMKKVEVR		https://hdl.handle.net/hdl:20.500.12633/$1				False														minid.test																minid		
mint	Molecular Interaction Database	https://mint.bio.uniroma2.it	The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.	^\d{1,7}$	6978836	luana.licata@gmail.com	https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1				False				MINT						2615				mint	mint				17		mint	r3d100010414				DB-0158						
mipmod	MIPModDB	http://bioinfo.iitk.ac.in/MIPModDB	MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.	^\w+$	HOSAPI0399	rsankar@iitk.ac.in	http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1				False				MIPMOD										mipmod	mipmod						mipmod											
mir	Identifiers.org Registry	https://registry.identifiers.org/registry	"The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or ""PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."	^\d{8}$	00100037		https://registry.identifiers.org/registry?query=MIR:$1				False				MIR										mir	mir																	
mirbase	miRBase pre-miRNA	http://www.mirbase.org/	The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).	^MI\d{7}$	MI0026471	sam.griffiths-jones@manchester.ac.uk	http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1	https://w3id.org/biopragmatics/resources/mirbase/mirbase.owl	https://w3id.org/biopragmatics/resources/mirbase/mirbase.obo		False				MIRBASE						2642		nbdc00136		mirbase	mirbase				210		mirbase	r3d100010566			Mirbase		P2870					
mirbase.family	miRBase Families	http://www.mirbase.org/	The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.		MIPF0000002	sam.griffiths-jones@manchester.ac.uk	http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1	https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl	https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.obo	MIRBASE_FAMILY	False																												Q6826947				
mirbase.mature	miRBase mature miRNA	http://www.mirbase.org/	The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.	^MIMAT\d{7}$	MIMAT0046872	sam.griffiths-jones@manchester.ac.uk	http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1	https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.owl	https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.obo	MIRBASEM	False				MIRBASE.MATURE										mirbase.mature	mirbase.mature						mirbase.mature						P2871					
mirex	mirEX	http://comgen.pl/mirex/?page=home	mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.	^\d+(\w+)?$	165a	wmk@amu.edu.pl	http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes				False				MIREX								nbdc02064		mirex	mirex																	
mirgenedb	microRNA Gene Database	https://mirgenedb.org/	mircoRNA Gene Database is a collection of animal microRNA genes. This database allows researchers to analyze mircoRNA properties like secondary structure and features in a phylogenetic context.	^[a-zA-Z0-9]+(-[a-zA-Z0-9]+)+$	Hsa-Let-7-P2a3	BastianFromm@gmail.com	https://mirgenedb.org/browse?qtype=mgid&org=ALL&query=$1				False																																
miriam	Identifiers.org namespace	https://www.ebi.ac.uk	Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.	^[0-9a-z_:\.-]+$	pubmed	n.lenovere@gmail.com	https://registry.identifiers.org/registry/$1			identifiers.namespace	False										1162				identifiers.namespace																		
miriam.collection	MIRIAM Registry collection	https://www.ebi.ac.uk/miriam/	MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.	^000\d{5}$	00000008		https://www.ebi.ac.uk/miriam/main/$1				True				MIRIAM.COLLECTION										miriam.collection	miriam.collection																	
miriam.resource	MIRIAM Legacy Registry Identifier	https://www.ebi.ac.uk/miriam/	MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.	^001\d{5}$	00100005		https://resolver.api.identifiers.org/resolveMirId/$1				True				MIRIAM.RESOURCE										miriam.resource	miriam.resource						miriam.resource											
mirnao	microRNA Ontology	http://code.google.com/p/mirna-ontology/	An application ontology for use with miRNA databases.			topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/MIRNAO_$1	http://aber-owl.net/media/ontologies/MIRNAO/11/mirnao.owl			True	MIRNAO			MIRNAO	MIRNAO											mirnao		miRNAO														
mirnest	miRNEST	http://rhesus.amu.edu.pl/mirnest/copy/	miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species.	^MNEST\d+$	MNEST029358	miszcz@amu.edu.pl	http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1				False				MIRNEST								nbdc01703		mirnest	mirnest						mirnest											
miro	Mosquito insecticide resistance	https://github.com/VEuPathDB-ontology/MIRO	Application ontology for entities related to insecticide resistance in mosquitos	^\d{8}$	40000617	louis@imbb.forth.gr	http://purl.obolibrary.org/obo/MIRO_$1		http://purl.obolibrary.org/obo/miro.obo		True	MIRO			MIRO	MIRO											miro	miro	MIRO														
mirtarbase	mirTarBase	https://mirtarbase.cuhk.edu.cn/	miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.	^MIRT\d{6}$	MIRT000002	ken.sd.hsu@gmail.com	https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1				True				MIRTARBASE								nbdc01217		mirtarbase	mirtarbase				715								P2646					
mirte	miRNA Target Prediction at EMBL	http://www.russelllab.org/miRNAs/	This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs		miR-1						False																																
mite	Minimum Information about a Tailoring Enzyme data repository	https://mite.bioinformatics.nl	MITE (Minimum Information about a Tailoring Enzyme) is a data repository and associated data standard designed to capture the reaction- and substrate-specificities of tailoring enzymes. Community-driven and fully expert-reviewed, it represents enzymatic reactions using reaction SMARTS and links to established resources such as UniProt, NCBI GenPept, Rhea, and MIBiG. MITE serves as a knowledgebase for enzyme and pathway annotation, in silico biosynthesis, and machine learning applications.	^MITE\d{7}$	MITE0000001	zdoucmm@gmail.com	https://mite.bioinformatics.nl/repository/$1				False																																
mito	Mention Typing Ontology	http://purl.org/spar/mito	"An ontology with predicates to formalization of the concept of mentions. The mentions may be either explicit (e.g. as when well stated into an article ""Dr. Johnson's groundbreaking research on climate change"") or implicit (e.g. such as discussing ""seminal studies in the field""). MiTO contains the object property mito:mentions and its inverse mito:isMentionedBy."		MentionType		http://purl.org/spar/mito/$1				False																																
mixs	Minimum Information about any (x) Sequence	https://w3id.org/mixs	The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample.	^\d{7}$	0001056	mam@lbl.gov	https://w3id.org/mixs/$1	https://w3id.org/mixs/mixs.owl.ttl			False	MIXS				MIXS												gscmixs															
mlc	MLCommons Association	https://mlcommons.org/en/	MLCommons Association artifacts, including benchmark results, datasets, and saved models.	^[0-9a-zA-Z\.\-\_]+$	0.7-123		https://www.mlcommons.org/mlc-id/$1				False														mlc																		
mmdb	Molecular Modeling Database	http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure	The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.	^\d{1,5}$	50885	siqian.he@nih.gov	http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1				False				MMDB						2667				mmdb	mmdb				508		mmdb											
mmmp.biomaps	Melanoma Molecular Map Project Biomaps	http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp	A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.	^\d+$	37		http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1			mmmp:biomaps	False				MMMP:BIOMAPS										mmmp.biomaps	biomaps						mmmp											
mmo	Measurement method ontology	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000	A representation of the variety of methods used to make clinical and phenotype measurements.	^\d{7}$	0000574	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/MMO_$1				False	MMO			MMO	MMO											mmo	mmo	MMO						mmo				Q81661696				
mmp.cat	MarCat	https://mmp.sfb.uit.no/databases/marcat/	MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.	^MMP\d+.\d+$	MMP743597.11		https://mmp.sfb.uit.no/databases/marcat/#/records/$1				False				MMP.CAT										mmp.cat	mmp.cat																	
mmp.db	MarDB	https://mmp.sfb.uit.no/databases/mardb/	MarDB includes all sequenced marine microbial genomes regardless of level of completeness.	^MMP\d+.\d+$	MMP02954345.1		https://mmp.sfb.uit.no/databases/mardb/#/records/$1				False				MMP.DB										mmp.db	mmp.db																	
mmp.fun	MarFun	https://mmp.sfb.uit.no/databases/marfun	MarFun is manually curated database for marine fungi which is a part of the MAR databases.	^MMP\d+.\d+$	MMP3888430		https://mmp.sfb.uit.no/databases/marfun/#/records/$1				False														mmp.fun																		
mmp.ref	MarRef	https://mmp.sfb.uit.no/databases/marref/	MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.	^MMP\d+.\d+$	MMP3312982.2		https://mmp.sfb.uit.no/databases/marref/#/records/$1				False				MMP.REF										mmp.ref	mmp.ref																	
mmrrc	Mutant Mouse Resource and Research Centers	https://www.mmrrc.org	The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.	^\d+$	70	f.grieder@nih.gov	http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1				False				MMRRC		MMRRC								mmrrc	mmrrc							r3d100013715	MMRRC									
mmsinc	MMsINC	http://mms.dsfarm.unipd.it/MMsINC	MMSsINC is a database of commercially-available compounds for virtual screening and chemoinformatic applications. MMsINC contains over 4 million non-redundant chemical compounds in 3D formats.		MMs00000001		http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1				False																					mmsinc											
mmsl	Multum MediSource Lexicon	https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html	The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included.	^\d+$	3355					MMSL_CODE	False											2.16.840.1.113883.6.175																					
mmusdv	Mouse Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv	Life cycle stages for Mus Musculus	^\d{7}$	0000066	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/MmusDv_$1			MmusDv	False	MMUSDV			MMUSDV	MMUSDV											mmusdv	mmusdv	MmusDv										Q81661698				
mo	Microarray experimental conditions	http://mged.sourceforge.net/ontologies/MGEDontology.php	The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.	^\w+$	ArrayGroup	stoeckrt@pcbi.upenn.edu	https://mged.sourceforge.net/ontologies/MGEDontology.php#$1				True	MO			MO	MO									mo	mo	mo												Q114677897				
mobidb	MobiDB	https://mobidb.org	MobiDB is a database of protein disorder and mobility annotations.	^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$	P10636	silvio.tosatto@unipd.it	https://mobidb.org/$1				False				MOBIDB								nbdc01956		mobidb	mobidb				623							DB-0183					uniprot	
mobio	Mobilome Ontology	https://github.com/arpcard/mobio	The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology.	^\d+$	0000001		http://purl.obolibrary.org/obo/MOBIO_$1	https://github.com/arpcard/mobio/raw/refs/heads/master/mobio.owl	https://github.com/arpcard/mobio/raw/refs/heads/master/mobio.obo		False																																
mobivoc	MobiVoc Open Mobility Vocabulary 1.1.4	https://www.mobivoc.org/	MobiVoc is an open vocabulary for future-oriented mobility solutions.		AccessCondition		http://schema.mobivoc.org/#$1				False																								mv								
mod	Protein modification	http://www.psidev.info/MOD	The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.	^\d{5}$	01467	pierre-alain.binz@chuv.ch	http://purl.obolibrary.org/obo/MOD_$1			PSI-MOD	False	PSIMOD			MOD	PSIMOD									mod	mod	mod	mod	MOD			psi.mod			mod				Q81661700				
modalia	MoDALIA Ontology	https://dalia.pages.rwth-aachen.de/dalia-ontology/	The aim of DALIA project is to build a platform for learning material for Research Data Management (RDM) and Data Science. The platform is based on a knowledge graph. We introduce MoDalia, the base ontology of DALIA knowledge graph. Modalia inherits some modules from EduCOR. It includes also modelling of micro -credentials and certificates		belongsToCluster	abdelmoneim.desouki@tu-darmstadt.de	https://purl.org/ontology/modalia#$1		https://git.rwth-aachen.de/dalia/dalia-ontology/-/raw/main/modalia.obo		False			20825																					modalia								
modeldb	ModelDB	https://modeldb.science	ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.	^\d+$	45539	perry.miller@yale.edu	https://modeldb.science/$1				False				MODELDB						2669		nbdc02085		modeldb	modeldb						modeldb	r3d100011330										
modeldb.concept	ModelDB concept	https://www.yale.edu	Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models.	^\d+$	3639		https://modeldb.science/modellist/$1				False														modeldb.concept																		
modsci	Modern Science Ontology	https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html	Modern Science Ontology (ModSci), for modeling relationships between modern science branches and related entities, such as scientific discoveries, phenomena, renowned scientists, instruments, etc. ModSci is an upper ontology that provides a unifying framework for the various domain ontologies that make up the Science Knowledge Graph Ontology Suite. The Systematic Approach for Building Ontologies (SABiO) has been followed in the development of ModSci. ModSci is a poly-hierarchical ontology that can be utilized in semantic web applications. ModSci powers two projects for semantically representing scholarly information: Open Research Knowledge Graph (for the categorization of research papers) and OpenResearch.org (for the categorization of the information about scientific events, research projects, scientific papers, publishers, and journals).		AcidbaseChemistry	sm_fathalla@yahoo.com	https://w3id.org/skgo/modsci#$1				False	ModSci				MODSCI								modsci											modsci								
moid	Metadata Management and distribution system for Multiple GNSS Networks	https://www.astro.oma.be/en/	M3G stands for “Metadata Management and distribution system for Multiple GNSS Networks”. M3G allows to upload, validate, and distribute GNSS station metadata such as IGS-style site logs, information about local networks, DOIs, nominal data provision, data licenses attached to the daily RINEX data, etc...	^[a-zA-Z0-9]+\.[a-f0-9]{24}$	station.6051b2f8b9142a5b8c676342		https://gnss-metadata.eu/MOID/$1				False														moid																		
molbase	Molbase	http://www.molbase.com/	Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.	^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$	128796-39-4		http://www.molbase.com/en/index.php?app=search&search_keyword=$1				False				MOLBASE										molbase	molbase																	
molbase.sheffield	MolBase	https://winter.group.shef.ac.uk/molbase/	An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.	^\d+$	1868						True																																
molbic.cellline	MolBiC Cell Line	https://molbic.idrblab.net	MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for cell lines used in assays measuring molecular bioactivity, linking them to associated compounds and proteins.	^CL\d+$	CL000025	zhufeng@zju.edu.cn	https://molbic.idrblab.net/data/cellline/details/$1				False																																
molbic.compound	MolBiC Compound	https://molbic.idrblab.net	MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for chemical compounds with experimentally validated bioactivity in cellular contexts.	^CP\d+$	CP0041613	zhufeng@zju.edu.cn	https://molbic.idrblab.net/data/compound/details/$1				False																																
molbic.protein	MolBiC Protein	https://molbic.idrblab.net	MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for proteins that serve as molecular targets in cell-based bioactivity measurements.	^PT\d+$	PT00819	zhufeng@zju.edu.cn	https://molbic.idrblab.net/data/protein/details/$1				False																																
molgluedb	MolGlueDB	https://www.molgluedb.com	Identifiers correspond to molecular glue compounds in the MolGlueDB which is a free and open-access online database dedicated to the collection and integration of molecular glue compound information.	^\d+$	1	qc@ouc.edu.cn	https://www.molgluedb.com/browseDB/$1				False																																
molmedb	MolMeDB	http://www.upol.cz/en/	MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. 	^[Mm]{2}[0-9]{5,}(\.[0-9]+)?$	MM00040	karel.berka@upol.cz	https://molmedb.upol.cz/mol/$1				False														molmedb																		
molmovdb	Database of Macromolecular Movements	http://bioinfo.mbb.yale.edu/MolMovDB/	The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits.		f665230-5267		http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1				False												nbdc00573									molmovdb											
mondo	Mondo Disease Ontology	https://monarch-initiative.github.io/mondo	The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world.	^\d{7}$	0000001	Sabrina@tislab.org	http://purl.obolibrary.org/obo/MONDO_$1		http://purl.obolibrary.org/obo/mondo.obo		False	MONDO		20699	MONDO	MONDO							nbdc02563		mondo		mondo	mondo	MONDO							Mondo		P5270	Q27468140				
mondo.issue	MONDO Issue Tracker	https://github.com/monarch-initiative/mondo/issues	An issue on the MONDO GitHub issue tracker	^\d+$	832		https://github.com/monarch-initiative/mondo/issues/$1				False																																
mop	Molecular Process Ontology	https://github.com/rsc-ontologies/rxno	MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.	^\d{7}$	0000079	batchelorc@rsc.org	http://purl.obolibrary.org/obo/MOP_$1		https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo		False	MOP		20466	MOP	MOP											mop	mop	MOP						mop				Q81661705				
morpheus	Morpheus model repository	https://morpheus.gitlab.io/	"The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.
"	^M[0-9]{4,}$	M0001		https://morpheus.gitlab.io/models/$1				False														morpheus																		
mosaic	MOSAiC Ontology	https://ontologies.dataone.org/MOSAiC.html	An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io).	^\d{8}$	00005643	brycemecum@gmail.com	https://purl.dataone.org/odo/MOSAIC_$1	https://ontologies.dataone.org/MOSAiC.owl			False	MOSAIC				MOSAIC																											
mp	Mammalian Phenotype Ontology	https://www.informatics.jax.org/vocab/mp_ontology/	The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.	^\d{7}$	0005452	pheno@jax.org	http://purl.obolibrary.org/obo/MP_$1				False	MP		20697	MP	MP									mp	mp	mp	mp	MP			mp				Mp			Q81661707				
mpath	Mouse pathology ontology	http://www.pathbase.net	A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes	^\d+$	728	pns12@hermes.cam.ac.uk	http://purl.obolibrary.org/obo/MPATH_$1		https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo	MPATH	False	MPATH			MPATH	MPATH							nbdc01568				mpath	mpath	MPATH			mpath							Q55118458				
mpid	Microbial Protein Interaction Database	https://www.ebi.ac.uk/intact/	The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.	^\d+$	1776	jgoll@emmes.com	https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-$1			mpidb	False				MPID										mpid	mpid				559		mpi											
mpio	Minimum PDDI Information Ontology	https://github.com/MPIO-Developers/MPIO	An ontology of minimum information regarding potential drug-drug interaction information.	^\d{7}$	0000004	mbrochhausen@uams.edu	http://purl.obolibrary.org/obo/MPIO_$1				False	MPIO			MPIO	MPIO											mpio	mpio	MPIO										Q81661711				
mro	MHC Restriction Ontology	https://github.com/IEDB/MRO	The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.	^\d{7}$	0000634	bpeters@lji.org	http://purl.obolibrary.org/obo/MRO_$1				False	MRO			MRO												mro	mro	MRO										Q81661712				
ms	Mass spectrometry ontology	http://www.psidev.info/groups/controlled-vocabularies	The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.	^\d{7}$	1000560	joshua.adam.klein@gmail.com	http://purl.obolibrary.org/obo/MS_$1				False	MS			MS	MS									ms	ms	ms	ms	MS						ms				Q81661714				
msigdb	Molecular Signatures Database	https://www.gsea-msigdb.org	The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can	^M\d+$	M1	jmesirov@ucsd.edu	https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/$1	https://w3id.org/biopragmatics/resources/msigdb/msigdb.owl.gz	https://w3id.org/biopragmatics/resources/msigdb/msigdb.obo.gz	msig	False												nbdc02550																				
msio	Metabolomics Standards Initiative Ontology	https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO	an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.	^\d{7}$	0000111	philippe.rocca-serra@oerc.ox.ac.uk	http://purl.obolibrary.org/obo/MSIO_$1				False																	msio							msio								
mtbd	Mouse Tumor Biology Database	http://tumor.informatics.jax.org	The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors.		1374		http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$1				False																					mtbd											
mth	Metathesaurus Names	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MTH/index.html	The Unified Medical Language System® (UMLS®) Metathesaurus (MTH) was developed and is maintained by the U.S. National Library of Medicine (NLM). MTH contains concept names, attributes, relationships, and other data that were created by NLM to facilitate construction of the UMLS Metathesaurus.	^U\d+$	U001388		https://uts.nlm.nih.gov/uts/umls/vocabulary/MTH/$1			umls.mth	False											2.16.840.1.113883.6.189																					
multicellds	MultiCellDS	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.		MCDS_S_0000000001	samuel.friedman@cammlab.org	http://multicellds.org/MultiCellDB/$1				False																																
multicellds.cell_line	MultiCellDS Digital Cell Line	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.	^MCDS_L_[a-zA-Z0-9]{1,10}$	MCDS_L_0000000001		http://multicellds.org/MultiCellDB/$1				False				MULTICELLDS.CELL_LINE										multicellds.cell_line	multicellds.cell_line															multicellds		
multicellds.collection	MultiCellDS collection	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).	^MCDS_C_[a-zA-Z0-9]{1,10}$	MCDS_C_0000000001		http://multicellds.org/MultiCellDB/$1				False				MULTICELLDS.COLLECTION										multicellds.collection	multicellds.collection															multicellds		
multicellds.snapshot	MultiCellDS Digital snapshot	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.	^MCDS_S_[a-zA-Z0-9]{1,10}$	MCDS_S_0000000001		http://multicellds.org/MultiCellDB/$1				False				MULTICELLDS.SNAPSHOT										multicellds.snapshot	multicellds.snapshot															multicellds		
mvx	Manufacturers of Vaccines	https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=mvx	The CDC's National Center for Immunization and Respiratory Diseases ([NCIRD](https://www.cdc.gov/ncird/)) developed and maintains HL7 Table 0227, Manufacturers of Vaccines (MVX). It includes both active and inactive manufacturers of vaccines in the US. Inactive MVX codes allow transmission of historical immunization records. When [MVX code is paired with a CVX code](https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=tradename) (vaccine administered code), the specific trade named vaccine may be indicated.	^\w+$	ASZ		https://phinvads.cdc.gov/vads/ViewCodeSystemConcept.action?oid=2.16.840.1.113883.12.227&code=$1				False											2.16.840.1.113883.6.60																					
mw.project	Metabolomics Workbench Project	http://www.metabolomicsworkbench.org/	Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).	^PR[0-9]{6}$	PR000001		http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1				False				MW.PROJECT										mw.project	mw.project																	
mw.study	Metabolomics Workbench Study	http://www.metabolomicsworkbench.org/	Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).	^ST[0-9]{6}$	ST000900		http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1				False				MW.STUDY										mw.study	mw.study																	
mwo	NFDI MatWerk Ontology	https://github.com/ISE-FIZKarlsruhe/mwo	NFDI-MatWerk aims to establish a digital infrastructure for Materials Science and Engineering (MSE), fostering improved data sharing and collaboration. This repository provides comprehensive documentation for NFDI MatWerk Ontology (MWO) v3.0.0, a foundational framework designed to structure research data and enhance interoperability within the MSE community. To ensure compliance with top-level ontology standards, MWO v3.0.0 is aligned with the Basic Formal Ontology (BFO) and incorporates the modular approach of the NFDIcore mid-level ontology, enriching metadata through standardized classes and properties. The mwo addresses key aspects of MSE research data, including the NFDI-MatWerk community structure, covering task areas, infrastructure use cases, projects, researchers, and organizations. It also describes essential NFDI resources, such as software, workflows, ontologies, publications, datasets, metadata schemas, instruments, facilities, and educational materials. Additionally, mwo represents NFDI-MatWerk services, academic events, courses, and international collaborations. As the foundation for the MSE Knowledge Graph, mwo facilitates efficient data integration and retrieval, promoting collaboration and knowledge representation across MSE domains. This digital transformation enhances data discoverability, reusability, and accelerates scientific exchange, innovation, and discoveries by optimizing research data management and accessibility. (from repository)	^\d{7}$	0001109	ho_beygi@yahoo.com	http://purls.helmholtz-metadaten.de/mwo/mwo_$1	https://github.com/ISE-FIZKarlsruhe/mwo/raw/refs/heads/main/mwo.owl			False	MWO				MWO																											
myco	MycoBrowser	https://mycobrowser.epfl.ch	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.		ML0224		https://mycobrowser.epfl.ch/genes/$1				False																																
myco.lepra	MycoBrowser leprae	https://mycobrowser.epfl.ch/	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.	^ML\w+$	ML0224		https://mycobrowser.epfl.ch/genes/$1				False				MYCO.LEPRA										myco.lepra	myco.lepra						myco.lepra									myco		
myco.marinum	MycoBrowser marinum	https://mycobrowser.epfl.ch	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.	^MMAR\_\d+$	MMAR_2462		https://mycobrowser.epfl.ch/genes/$1				False				MYCO.MARINUM										myco.marinum	myco.marinum						myco.marinum									myco		
myco.smeg	MycoBrowser smegmatis	https://mycobrowser.epfl.ch	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.	^MSMEG\w+$	MSMEG_3769		https://mycobrowser.epfl.ch/genes/$1				False				MYCO.SMEG										myco.smeg	myco.smeg						myco.smeg									myco		
myco.tuber	TubercuList knowledge base	http://tuberculist.epfl.ch/	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.	^Rv\d{4}(A|B|c)?$	Rv1908c	stewart.cole@epfl.ch	https://mycobrowser.epfl.ch/genes/$1			TubercuList	False				MYCO.TUBER										myco.tuber	myco.tuber						tuberculist					DB-0106				myco		
mycobank	Fungal Nomenclature and Species Bank	http://www.mycobank.org/	MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.	^\d+$	349124	vrobert@unistra.fr	https://www.mycobank.org/page/Name%20details%20page/$1				False				MYCOBANK								nbdc01815		mycobank	mycobank						mycobank	r3d100011222										
mzspec	Universal Spectrum Identifier	http://www.psidev.info/usi	The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.	^.+$	PXD002255:ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2	gerhard.mayer@rub.de	http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1				False				MZSPEC										mzspec	mzspec																	
n2t	Name-to-Thing	https://n2t.net	An ARK resolver as well as resolver built with common prefixes as in Identifiers.org		chebi		https://n2t.net/$1:				False																																
n4e	NFDI4Earth Ontology	https://nfdi4earth.de/ontology/	"The ontology and metadata schema for the NFDI4Earth Knowledge Hub. See serializations of this schema as an OWL ontology here:
  - [RDF/XML](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.xml)
  - [RDF/Turtle](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.ttl)
  - [RDF/JSON-LD](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.jsonld)
  - [RDF/N-Triples](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.nt)"		API		http://nfdi4earth.de/ontology/$1				False																								n4e								
namerxn	NameRXN	https://www.nextmovesoftware.com/namerxn.html	The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).		4.2.78	gregory.landrum@phys.chem.ethz.ch					False																																
nando	Nanbyo Disease Ontology	https://nanbyodata.jp/	Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.	^\d+$	1200031	takatter@dbcls.rois.ac.jp	https://nanbyodata.jp/disease/NANDO:$1				False	NANDO				NANDO									nando											Nando							
napdi	Natural Product-Drug Interaction Research Data Repository	https://repo.napdi.org/	The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).	^[0-9]+$	28	rdb20@pitt.edu	https://repo.napdi.org/study/$1				False				NAPDI										napdi	napdi																	
napp	Nucleic Acids Phylogenetic Profiling	http://rssf.i2bc.paris-saclay.fr/NAPP/index.php	NAPP (Nucleic Acids Phylogenetic Profiling) is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.	^\d+$	351	daniel.gautheret@u-psud.fr	http://rssf.i2bc.paris-saclay.fr/NAPP/Niveau2.php?specie=$1				False				NAPP										napp	napp						napp											
narcis	National Academic Research and Collaborations Information System	http://www.narcis.nl	NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.	^oai\:cwi\.nl\:\d+$	oai:cwi.nl:4725		http://www.narcis.nl/publication/RecordID/$1				False				NARCIS								nbdc01862		narcis	narcis																	
nasaosdr.biospecimen	NASA Open Science Data Repository Biospecimen	https://www.nasa.gov/osdr	Identifiers for biospecimens used in experiments that investigate biological and health responses of terrestrial life to spaceflight	^\d+$	7943	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/biospecimens/$1				False																																
nasaosdr.experiment	NASA Open Science Data Repository Experiment	https://www.nasa.gov/osdr	Identifiers for space-related data from experiments that investigate biological and health responses of terrestrial life to spaceflight	^OS-\d+$	OS-27	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/experiments/$1				False																																
nasaosdr.hardware	NASA Open Science Data Repository Hardware	https://www.nasa.gov/osdr	Identifiers for hardware used in experiments that investigate biological and health responses of terrestrial life to spaceflight	^\d+$	2011	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/hardware/$1				False																																
nasaosdr.mission	NASA Open Science Data Repository Mission	https://www.nasa.gov/osdr	Identifiers for missions associated with experiments that investigate biological and health responses of terrestrial life to spaceflight	^.+$	ARCBedrest	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/missions/$1				False																																
nasaosdr.payload	NASA Open Science Data Repository Payload	https://www.nasa.gov/osdr	Identifiers for payloads associated with experiments that investigate biological and health responses of terrestrial life to spaceflight	^.+$	VEG-03D	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/payloads/$1				False																																
nasaosdr.study	NASA Open Science Data Repository Study	https://www.nasa.gov/osdr	Identifiers for space-related data from studies that investigate biological and health responses of terrestrial life to spaceflight	^OSD-\d+$	OSD-678	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/studies/$1				False																																
nasaosdr.subject	NASA Open Science Data Repository Subject	https://www.nasa.gov/osdr	Identifiers for subjects of experiments that investigate biological and health responses of terrestrial life to spaceflight	^\d+$	58	sylvain.v.costes@nasa.gov	https://osdr.nasa.gov/bio/repo/data/subjects/$1				False																																
nasc	NASC code	http://arabidopsis.info/	The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.	^(\w+)?\d+$	N1899	sean@arabidopsis.org.uk	http://arabidopsis.info/StockInfo?NASC_id=$1				False				NASC										nasc	nasc						nasc	r3d100010906										
nbn	National Bibliography Number	http://nbn-resolving.org/resolve_urn.htm	The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland.  They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.	^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$	urn:nbn:fi:tkk-004781		http://nbn-resolving.org/$1				False				NBN										nbn	nbn																	
nbo	Neuro Behavior Ontology	https://github.com/obo-behavior/behavior-ontology/	An ontology of human and animal behaviours and behavioural phenotypes	^\d{7}$	0000564	g.gkoutos@bham.ac.uk	http://purl.obolibrary.org/obo/NBO_$1		https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo		False	NBO			NBO	NBO											nbo	nbo	NBO										Q81661716				
nbrc	NITE Biological Resource Center	http://www.nbrc.nite.go.jp/e/index.html	NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.	^\d+$	00001234		http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1				False				NBRC										nbrc	nbrc						nbrc											
ncats.bioplanet	National Center for Advancing Translation Sciences BioPlanet	https://tripod.nih.gov/bioplanet/	The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.	^\d+$	3	ruili.huang@nih.gov	https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1				False																																
ncats.drug	NCATS Drugs	https://drugs.ncats.io/	"The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:

- US Approved Drugs
- Marketed Drugs
- Investigational Drugs
- Other Substances"		44259		https://drugs.ncats.io/drug/$1			inxight|inxight-drugs	False																																
ncbi.assembly	Assembly	https://www.ncbi.nlm.nih.gov/	A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.	^[a-zA-Z0-9_\.]+$	GCF_000005845.2		https://www.ncbi.nlm.nih.gov/datasets/genome/$1				False				NCBIAssembly										assembly								r3d100012688										
ncbi.gc	NCBI Genetic Code	https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes	Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.	^\d+$	11	elzanowski@biol.uni.wroc.pl	https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1	https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.owl	https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.obo	gc|gc_id	False																																
ncbi.genome	NCBI Genome	https://www.ncbi.nlm.nih.gov/genome	This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.	^\d+$	51		https://www.ncbi.nlm.nih.gov/genome/$1				False				NCBIGenome						2787												r3d100010785										
ncbi.resource	NCBI Registry	https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/	A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources		ECOCYC		https://bioregistry.io/metaregistry/ncbi/$1				False																																
ncbibook	NCBI Bookshelf	https://www.ncbi.nlm.nih.gov/books	The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover.	^NBK\d+$	NBK331		https://www.ncbi.nlm.nih.gov/books/$1				False																																
ncbidrs	NCBI Data Repository Service	https://www.ncbi.nlm.nih.gov/	This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. 	^[0-9a-fA-F]{32}$	72ff6ff882ec447f12df018e6183de59		https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1				False														ncbidrs																		
ncbigene	NCBI Gene	https://www.ncbi.nlm.nih.gov/gene	Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.	^\d+$	100010	murphyte@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/gene/$1			EGID|EntrezGene|GeneID|NCBIGene|NCBI_GeneID|entrez|entrez gene/locuslink|nihgeneid	False				NCBIGene						1027	2.16.840.1.113883.6.340	nbdc00073		ncbigene	ncbigene						ncbigene	r3d100010650			Ncbigene	DB-0118	P351					
ncbigi	GenInfo Identifier	https://www.ncbi.nlm.nih.gov/genbank/sequenceids/	A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number.	^\d+$	568815597		http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1			NCBI_gi|ncbi.gi	False				NCBIGI						2314																						genbank
ncbiortholog	NCBI Orthologs	https://www.ncbi.nlm.nih.gov/gene/	Database of one-to-one ortholog information provided by the NCBI as a subset of their Gene resource. Used for users to access ortholog information for over 1000 species of vertebrates and arthropods.	^\d+$	2	murphyte@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/gene/$1/ortholog				False																																
ncbiprotein	NCBI Protein	https://www.ncbi.nlm.nih.gov/protein	The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.	^\w+_?\d+(.\d+)?$	CAA71118.1		https://www.ncbi.nlm.nih.gov/protein/$1				False				NCBIProtein								nbdc00636		ncbiprotein	ncbiprotein						ncbi.protein	r3d100010776										
ncbitaxon	NCBI Taxonomy	https://github.com/obophenotype/ncbitaxon	The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.	^(\d+)|([a-zA-Z_]+)$	2170610	schoch2@ncbi.nlm.nih.gov	http://purl.obolibrary.org/obo/NCBITaxon_$1		http://purl.obolibrary.org/obo/ncbitaxon.obo.gz	NCBI Taxonomy|NCBITaxon|NCBITaxonomyID|NCBI_Taxon_ID|NCBI_taxid|TAX|TaxonomyID|ncbiTaxUID|taxid|taxon|taxonomy|uniprot.taxonomy	False	NCBITAXON	TAX	509	TAXONOMY	NCBITAXON	NCBI_TaxID				1179	2.16.840.1.113883.6.205		tax	taxonomy	taxonomy	ncbitaxon	ncbitaxon	NCBITaxon			taxonomy	r3d100010415			Taxonomy		P685	Q81661717				
nci.drug	NCI Drug Dictionary ID	https://www.cancer.gov/publications/dictionaries/cancer-drug	identifier of an entry in the NCI Drug Dictionary		beta-carotene		https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1				False																											P11623					
ncim	NCI Metathesaurus	http://ncim.nci.nih.gov/	NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.	^C\d+$	C0026339		http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1				False				NCIM										ncim	ncim																	
ncit	NCI Thesaurus	https://github.com/ncit-obo-org/ncit-obo-edition	NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.	^[CRPA]\d+$	C138986	ncithesaurus@mail.nih.gov	http://purl.obolibrary.org/obo/NCIT_$1		http://purl.obolibrary.org/obo/ncit.obo	NCI|NCI2004_11_17|NCIT|NCIT_Thesaurus|NCIThesaurus|NCITm|NCITt|NCI_Thesaurus|NCIt|NCit|ncithesaurus	False	NCIT			NCIT	NCIT	NCIt					2.16.840.1.113883.6.206	nbdc02651		ncit	ncit	ncit	ncit	NCIT			ncit			ncit			P1748	Q113012671				
ncro	Non-Coding RNA Ontology	http://omnisearch.soc.southalabama.edu/w/index.php/Ontology	An ontology for non-coding RNA, both of biological origin, and engineered.	^\d{7}$	0002927	huang@southalabama.edu	http://purl.obolibrary.org/obo/NCRO_$1	http://purl.obolibrary.org/obo/ncro.owl	https://raw.githubusercontent.com/OmniSearch/ncro/master/src/ontology/ncro.obo		False	NCRO			NCRO	NCRO											ncro	ncro	NCRO										Q55118485				
ndc	National Drug Code	http://www.accessdata.fda.gov/scripts/cder/ndc/	The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.	^\d+\-\d+\-\d+$	0002-1975-61		http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1				False				NDC							2.16.840.1.113883.6.69			ndc	ndc												P3640	Q6972354				
nddf	National Drug Data File	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF	FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.	^\d{6}$	002678	cs@firstdatabank.com	http://purl.bioontology.org/ontology/NDDF/$1				False	NDDF				NDDF						2.16.840.1.113883.6.208																					
ndex	Network Data Exchange	https://www.ndexbio.org	The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.		aa78a43f-9c4d-11eb-9e72-0ac135e8bacf	rpillich@ucsd.edu	https://www.ndexbio.org/viewer/networks/$1				False																						r3d100012690										
ndfrt	National Drug File - Reference Terminology	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT	NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction].	^N[0-9]{10}$	N0000001662	michael.lincoln@va.gov	https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NDFRT&code=$1			NUI|ndf-rt	False	NDFRT				NDFRT						2.16.840.1.113883.6.209							NDF-RT			ndfrt						P2115					
nembase	Nematode & Neglected Genomics	http://www.nematodes.org	NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins.		NBC00001		http://www.nematodes.org/nembase4/cluster.php?cluster=$1				True																					nembase											
nemo	Neuroscience Multi-Omic BRAIN Initiative Data	https://www.nemoarchive.org	This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.	^[a-z]{3}-[a-km-z0-9]{7}$	smp-m3w9hbe		https://assets.nemoarchive.org/$1				False														nemo																		
nemo.competence	Competence Ontology	https://github.com/jpalmeida/competence-ontology	A small ontology expressing skills and competencies.		CognitiveCompetence		http://purl.org/nemo/competence#$1				False																																
nemo2	Neural ElectroMagnetic Ontology	http://aimlab.cs.uoregon.edu/NEMO/web/index.html	Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource.		0000196	gfrishkoff@gsu.edu	http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1				False	NEMO				NEMO																											
nepomuk.nao	NEPOMUK Annotation Ontology Specification	http://www.semanticdesktop.org/ontologies/nao	The annotation ontology provides vocabulary that enables users to attach custom descriptions, identifiers, tags and ratings to resources on their desktop. Via other properties, the user is also able to make generic relationships between related resources explicit. Some relationships between resources are too general to be included at the domain ontology level. Instead, these properties are also defined in the annotation ontology. Given the high-level status of this ontology, these propreties can be used to link any related resources on the user's desktop, as well as provide custom human-readable textual annotations. (from homepage)		created		http://www.semanticdesktop.org/ontologies/2007/08/15/nao#$1				False																																
nepomuk.nco	NEPOMUK Contact Ontology	http://www.semanticdesktop.org/ontologies/2007/03/22/nco	NEPOMUK Contact Ontology describes contact information, common in many places on the desktop. It evolved from the VCARD specification (RFC 2426) and has been inspired by the Vcard Ontology by Renato Ianella. The scope of NCO is much broader though. This document gives an overview of the classes, properties and intended use cases of the NCO ontology. (from homepage)		fullname		http://www.semanticdesktop.org/ontologies/2007/03/22/nco#$1				False																																
nepomuk.pimo	Personal Information Model	http://www.semanticdesktop.org/ontologies/pimo	The PIMO Ontology can be used to express Personal Information Models of individuals. It is based on RDF and NRL, the NEPOMUK Representational Language and other Semantic Web ontologies. This document describes the principle elements of the language and how to use them. (from homepage)		Note		http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#$1				False																																
neurolex	NIF Standard Ontology: Neurolex	https://github.com/SciCrunch/NIF-Ontology	The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).	^\d+$	4	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_$1			NLX|nlx	False				NEUROLEX										neurolex	neurolex						neurolex											
neuromorpho	NeuroMorpho	http://neuromorpho.org/index.jsp	NeuroMorpho.Org is a centrally curated inventory of  digitally reconstructed neurons.	^\w+$	Rosa2	Ascoli@gmu.edu	http://neuromorpho.org/neuron_info.jsp?neuron_name=$1				False				NEUROMORPHO						2657				neuromorpho	neuromorpho						neuromorpho											
neuronames	NeuroNames	http://braininfo.rprc.washington.edu/	BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it.	^\d+$	268		http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1			neuroname	False																											P4394	Q1773567				
neurondb	NeuronDB	http://senselab.med.yale.edu/NeuronDB/	NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.	^\d+$	265		http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1				True				NEURONDB						2656				neurondb	neurondb						neurondb											
neurovault.collection	NeuroVault Collection	http://neurovault.org	Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.	^[1-9][0-9]*$	3304		https://neurovault.org/collections/$1				False				NEUROVAULT.COLLECTION										neurovault.collection	neurovault.collection																	
neurovault.image	NeuroVault Image	http://neurovault.org	Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.	^[1-9][0-9]*$	58788		https://neurovault.org/images/$1				False				NEUROVAULT.IMAGE										neurovault.image	neurovault.image																	
nextdb	Nematode Expression Pattern DataBase	http://nematode.lab.nig.ac.jp/	NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.	^[A-Za-z0-9]+$	6b1		http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1				False				NEXTDB								nbdc00594		nextdb	nextdb						nextdb											
nextprot	nextProt	https://www.nextprot.org/	neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.	^NX_\w+$	NX_O00165	monique.zahn@sib.swiss	https://www.nextprot.org/db/entry/$1			NXP	False				NEXTPROT								nbdc02107		nextprot	nextprot											DB-0161		Q6983890				
nextprot.family	neXtProt family	https://www.nextprot.org/	"NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. 
(Developed by the SIB Swiss Institute of Bioinformatics)"	^\d+$	01406		https://www.nextprot.org/term/FA-$1			NXPFA	False																																
nexus	NeXusOntology	https://github.com/nexusformat/NeXusOntology	NeXusOntology: Machine-readable ontology of the NeXus definitions		version		http://purl.org/nexusformat/definitions/NeXusOntology#$1				False																								nexus								
nfdi.core	NFDI Core Ontology	https://ise-fizkarlsruhe.github.io/nfdicore/	A mid-level ontology for representing metadata related to NFDI resources, including individuals, organizations, projects, data portals, and more	^\d+$	0000106	joerg.waitelonis@fiz-karlsruhe.de	https://nfdi.fiz-karlsruhe.de/ontology/NFDI_$1	https://github.com/ISE-FIZKarlsruhe/nfdicore/raw/refs/heads/main/nfdicore.owl			False																																
nfdi.kgi	NFDI Knowledge Graph Registry	https://kgi.services.base4nfdi.de	Assigns identifiers to knowledge graphs (KGs) that are used and/or maintained within any NFDI consortium.	^KGR\d+$	KGR1	lozana.rossenova@tib.eu	http://kgi.services.base4nfdi.de/entity/$1				False																																
nfdi4chem.ontocape	Ontology for computer aided process engineering	https://www.avt.rwth-aachen.de/cms/AVT/Forschung/Software/~ipts/OntoCape/	OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources.								True																																
nfdi4chem.osmo	Ontology for simulation, modelling, and optimization	https://zenodo.org/record/5237774#.YXq72hxCRGo	OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)		application_case		https://purl.org/vimmp/osmo#$1				True			20710																					osmo								
nfdi4culture.cto	NFDI4Culture Ontology	https://nfdi4culture.de/ontology/	The NFDI4Culture Ontology (CTO) is a domain-specific ontology module developed within the Task Area 5 of the NFDI4Culture initiative. (from homepage)	^\d{7}$	0001003		https://nfdi4culture.de/ontology/CTO_$1	https://github.com/ISE-FIZKarlsruhe/nfdi4culture/raw/refs/heads/main/cto.owl			False																								cto								
nfdi4culture.id	NFDI4Culture Metadata API	https://nfdi4culture.de/id	The NFDI4Culture portal offers all content as Linked Open Data over this RESTful API. The API implements the Hydra-Specification of the W3C Hydra Community Group. The semantic description of this API can be retrieved by clients via the Hydra documentation file (JSON). Each metadata record offered via this API can also be retrieved in one of following machine-readable LOD serializations. The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage).		E4330		https://nfdi4culture.de/id/$1				False																																
nfdi4dso	NFDI4DS Ontology	https://nfdi.fiz-karlsruhe.de/nfdi4dso/	The NFDI4DS ontology (nfdi4dso) is an ontology describing various resources all resources (datasets, data providers, persons, projects and other entities) within the domain of NFDI4DataScience. nfdi4dso is a module that builds upon the NFDIcore Ontology (https://ise-fizkarlsruhe.github.io/nfdicore/2.0.0/) and maintains alignment with the Basic Formal Ontology (BFO). [from homepage]		City		https://nfdi.fiz-karlsruhe.de/nfdi4dso/$1				False																																
nfportal.tool	Neurofibromatosis Data Portal Tools	https://nf.synapse.org	Identifiers represent experimental tools and resources for neurofibromatosis (NF) research in the NF Data Portal Tools catalog.	^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$	02dacc42-ea46-48fb-a4df-7a875d801086	robert.j.allaway@gmail.com	https://nf.synapse.org/Explore/Tools/DetailsPage?resourceId=$1				False																																
ngbo	Next Generation Biobanking Ontology	https://github.com/Dalalghamdi/NGBO	Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.	^\d{7}$	6000122	dal.alghamdi92@gmail.com	http://purl.obolibrary.org/obo/NGBO_$1				False	NGBO				NGBO											ngbo	ngbo	NGBO														
ngl	NASA GeneLab	https://genelab-data.ndc.nasa.gov/genelab/	NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.	^GLDS-\d+$	GLDS-141		https://genelab-data.ndc.nasa.gov/genelab/accession/$1				False				NGL										ngl	ngl																	
nhcdr	NINDS Human Cell and Data Repository	https://stemcells.nindsgenetics.org	Cell line collections (Providers)		ND50028		https://stemcells.nindsgenetics.org?line=$1				False						NHCDR																										
niaest	NIA Mouse cDNA Project	http://lgsun.grc.nia.nih.gov/cDNA/	A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.	^\w\d{4}\w\d{2}(\-[35])?$	J0705A10	dawood@helix.nih.gov	http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1				True				NIAEST										niaest	niaest						niaest											
niaid.chemdb	NIAID ChemDB ID	http://chemdb.niaid.nih.gov	ID in NIAID ChemDB		059486		http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1				False																											P2065					
nif.cell	NIF Cell	http://neuinfo.org/	Neuronal cell types			smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_CELL_$1				True	NIFCELL			NIF_CELL	NIFCELL											nif_cell																
nif.dysfunction	NIF Dysfunction	http://neuinfo.org/				smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1				True				NIF_DYSFUNCTION												nif_dysfunction																
nif.ext	NIF Standard Ontology: External	https://github.com/SciCrunch/NIF-Ontology	"NIFEXT covers IRIs that were ""external"" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed."	^\d+$	7123	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nifext_$1			NIFEXT	False																																
nif.grossanatomy	NIF Gross Anatomy	http://neuinfo.org/				smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1				True				NIF_GROSSANATOMY												nif_grossanatomy																
nif.std	NIF Standard Ontology	https://github.com/SciCrunch/NIF-Ontology	NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.	^BAMSC\d+$	BAMSC981	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/$1			NIFSTD	False	NIFSTD				NIFSTD																											
nihhesc	NIH Human Embryonic Stem Cell Registry	https://grants.nih.gov/stem_cells/registry/current.htm	The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)		NIHhESC-10-0083		https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1				False						NIHhESC																										
nihreporter.project	NIH RePORTER	https://reporter.nih.gov/	RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.	^\d+$	10343835	report@mail.nih.gov	https://reporter.nih.gov/project-details/$1	https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.owl.gz	https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.obo.gz		False																																
nist	NIST Chemistry WebBook	https://webbook.nist.gov/chemistry/	The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species.							NIST|NIST Chemistry WebBook	False																																
nist.codata	NIST/CODATA ID	http://physics.nist.gov/cuu/Constants/index.html	identifier for a physical constant		c		https://physics.nist.gov/cgi-bin/cuu/Value?$1				False																											P1645					
nkos	Networked Knowledge Organization Systems/Services/Structures	http://w3id.org/nkos	"NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems/services (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.

Knowledge Organization Systems/Services (KOS) model the underlying semantic structure of a domain. Embodied as Web-based services, they can facilitate resource discovery and retrieval. They act as semantic road maps and make possible a common orientation by indexers and future users (whether human or machine). -- Douglas Tudhope, Traugott Koch (2004)."		alignedWith		http://w3id.org/nkos/$1				False																																
nlcd	United States Geological Survey - National Land Cover Database	https://www.mrlc.gov/data/type/land-cover	A vocabulary for describing the usage of land cover (e.g., pasture, wetlands, barren, forest, water) extended from the original 16 land cover classes proposed by the [Anderson Level II classification system](https://doi.org/10.3133/pp964) in 1976	^\d+$	12						False																																
nlfff	NLFFF Database	https://nlfff.dataset.deepsolar.space/en/	Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database	^[0-9]+$	345201101230312003		http://database.deepsolar.space:18080/dbs/nlfff/$1				False														nlfff																		
nlm	National Library of Medicine Catalog	https://www.ncbi.nlm.nih.gov/nlmcatalog	The NLM Catalog provides access to NLM bibliographic data for journals, books, audiovisuals, computer software, electronic resources and other materials. Links to the library's holdings in LocatorPlus, NLM's online public access catalog, are also provided. [from homepage]	^\d+$	101775319	custserv@nlm.nih.gov	https://www.ncbi.nlm.nih.gov/nlmcatalog/$1	https://w3id.org/biopragmatics/resources/nlm/nlm.owl	https://w3id.org/biopragmatics/resources/nlm/nlm.obo		False			528																									Q986957				
nlm.publisher	NLM Publisher Codes	https://ftp.ncbi.nlm.nih.gov/pubmed/xmlprovidernames.txt	Publisher short codes appearin in the NLM Catalog.		wiley	custserv@nlm.nih.gov		https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.owl	https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.obo		False																																
nlx.anat	NeuroLex Anatomy	https://scicrunch.org/scicrunch/interlex/dashboard	NLXANAT covers anatomy terms. Almost all terms are also in Uberon.	^\d+$	090201	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1				False																																
nlx.br	NIF Standard Ontology: Brain Regions	https://github.com/SciCrunch/NIF-Ontology	NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999).	^\d+$	145	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_br_$1			NLXBR	False																																
nlx.cell	NIF Standard Ontology: Cell Types	https://github.com/SciCrunch/NIF-Ontology	NLXCELL conatins cell types with a focus on neuron types.	^\d+$	091005	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1			NLXCELL	False																																
nlx.chem	NIF Standard Ontology: Chemical	https://github.com/SciCrunch/NIF-Ontology	NLXCHEM covers chemicals. Most classes are also in ChEBI.	^\d+$	090801	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1			NLXCHEM	False																																
nlx.dys	NeuroLex Dysfunction	https://scicrunch.org/scicrunch/interlex/dashboard	NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc.	^\d+$	20090602	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1				False																																
nlx.func	NIF Standard Ontology: Cognitive Function	https://github.com/SciCrunch/NIF-Ontology	NLXFUNC covers terms for cognitive function.	^\d+$	90801	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_func_$1			NLXFUNC	False																																
nlx.inv	NIF Standard Ontology: Investigations	https://github.com/SciCrunch/NIF-Ontology	NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis.	^\d+$	90901	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1			NLXINV	False																																
nlx.mol	NIF Standard Ontology: Molecules	https://github.com/SciCrunch/NIF-Ontology	NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system.	^\d+$	90806	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1			NLXMOL	False																																
nlx.oen	NIF Standard Ontology: OEN Terms in Neurolex	https://github.com/SciCrunch/NIF-Ontology	NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results).	^\d+$	0001000	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/oen_$1			NLXOEN	False																																
nlx.org	NIF Standard Ontology: Organisms	https://github.com/SciCrunch/NIF-Ontology	NLXORG covers organisms.	^\d+$	090701	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1			NLXORG	False																																
nlx.qual	NIF Standard Ontology: Qualities	https://github.com/SciCrunch/NIF-Ontology	NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO).	^\d+$	100810	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1			NLXQUAL	False																																
nlx.res	NIF Standard Ontology: Digital Resources	https://github.com/SciCrunch/NIF-Ontology	NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites	^\d+$	090924	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_res_$1			NLXRES	False																																
nlx.sub	NIF Standard Ontology: Subcellular Entities	https://github.com/SciCrunch/NIF-Ontology	NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).	^\d+$	090803	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1			NLXSUB|nif_subcellular	False																														neurolex		
nmdc	National Microbiome Data Collaborative	https://microbiomedata.org/	An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.	^.{2,}$	y3ax-8bq3-60	donny@polyneme.xyz	https://w3id.org/nmdc/$1				False														nmdc														Q107698738				
nmpdr	National Microbial Pathogen Data Resource	http://www.nmpdr.org	The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.		fig|306254.1.peg.183		http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1				True																					nmpdr											
nmr	NMR-instrument specific component of metabolomics investigations	http://msi-ontology.sourceforge.net/	nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.	^\d+$	1000003	schober@imbi.uni-freiburg.de	https://www.ebi.ac.uk/ols4/ontologies/nmrcv/terms?curie=NMR:$1	https://nmrml.org/cv/stable/nmrCV.owl		nmrcv	True	NMR			NMR	NMR									nmr	nmr	nmr	nmrcv				nmr			nmrcv				Q114677901				
nmrshiftdb2	NMRShiftDB structure	https://nmrshiftdb.nmr.uni-koeln.de	NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.	^[0-9]+$	234	stefan.kuhn@dmu.ac.uk	https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1			NMRShiftDB	False														nmrshiftdb2								r3d100010316					P9405					
nmrxiv.compound	nmrXiv compound	https://nmrxiv.org/compounds	compounds appearing in nmrXiv that have associated spectra.		188		https://nmrxiv.org/spectra?compound=$1				False																																
nmrxiv.project	nmrXiv project	https://nmrxiv.org/projects	A project in the nmrXiv	^P\d+$	P136		https://nmrxiv.org/project/$1				False																																
nmrxiv.sample	nmrXiv sample	https://nmrxiv.org/spectra	spectra (samples) in the nmrXiv database	^S\d+$	S1295		https://nmrxiv.org/sample/$1				False																																
noaa.cameo	CAMEO Chemicals ID	https://cameochemicals.noaa.gov	CAMEO Chemicals is a database of hazardous chemical datasheets that emergency responders and planners can use to get response recommendations and predict hazards—such as explosions or toxic fumes.	^\d*$	19757		https://cameochemicals.noaa.gov/chemical/$1				False																											P11931	Q125807660				
noaa.species	NOAA Fisheries Species Directory	https://www.fisheries.noaa.gov/species-directory	Identifier for a species on the noaa fisheries website	^[a-z]+(\-[a-z]+)*$	long-finned-pilot-whale		https://www.fisheries.noaa.gov/species/$1			noaa	False																											P6049					
nomen	A nomenclatural ontology for biological names	https://github.com/SpeciesFileGroup/nomen	NOMEN is a nomenclatural ontology for biological names (not concepts).  It encodes the goverened rules of nomenclature.	^\d{7}$	0000295	diapriid@gmail.com	http://purl.obolibrary.org/obo/NOMEN_$1				False	NOMEN				NOMEN											nomen	nomen	NOMEN										Q81661723				
noncodev3	NONCODE v3	http://www.noncode.org/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.	^\d+$	377550	biozy@ict.ac.cn	http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1				True				NONCODEV3										noncodev3	noncodev3						noncode											
noncodev4.gene	NONCODE v4 Gene	http://www.bioinfo.org/NONCODEv4/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.	^NONHSAG\d{5}$	NONHSAG00001		http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1				True				NONCODEV4.GENE										noncodev4.gene	noncodev4.gene																	
noncodev4.rna	NONCODE v4 Transcript	http://www.bioinfo.org/NONCODEv4/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.	^NONHSAT\d{6}$	NONHSAT000001		http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1				True				NONCODEV4.RNA										noncodev4.rna	noncodev4.rna																	
nord	National Organization for Rare Disorders	https://rarediseases.org	A website containing information about rare diseases, powered by Wordpress.	^\d+$	1693	sean@skm.digital	https://rarediseases.org/?p=$1				False																																
norine	Nonribosomal Peptides Database	https://bioinfo.cristal.univ-lille.fr/norine/	Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.	^NOR\d+$	NOR00681	maude.pupin@univ-lille.fr	https://bioinfo.cristal.univ-lille.fr/norine/result.jsp?ID=$1				False				NORINE										norine	norine						norine											
novus	Novus Biologicals	https://www.novusbio.com	A vendor of antibodies and other biologics		nb100-56351		https://www.novusbio.com/products/$1				False																																
npass	Natural Product Activity and Species Source Database	http://bidd.group/NPASS/	Database for integrating species source of natural products & connecting natural products to biological targets via  experimental-derived quantitative activity data.	^NPC\d+$	NPC139585	chenyuzong@sz.tsinghua.edu.cn	https://bidd.group/NPASS/compound.php?compoundID=$1	https://w3id.org/biopragmatics/resources/npass/npass.owl	https://w3id.org/biopragmatics/resources/npass/npass.obo		False																																
npatlas	The Natural Products Atlas	https://www.npatlas.org	Identifiers for microbially derived natural products that contains compound structures, producing organism taxonomy, biosynthetic and chemical properties.	^NPA\d{6}$	NPA000001	rliningt@sfu.ca	https://www.npatlas.org/explore/compounds/$1				False																																
npm	Node Package Manager	https://www.npmjs.com	A repository of software packages written in Javascript, TypeScript, and related.		@biopragmatics/curies		https://www.npmjs.com/package/$1				False																																
npo	NanoParticle Ontology	https://bioportal.bioontology.org/ontologies/NPO	An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.	^\d+$	1731	nathan.baker@pnnl.gov	http://purl.bioontology.org/ontology/npo#NPO_$1				False	NPO				NPO																											
nrfc	National Repository of Fish Cell Lines	https://mail.nbfgr.res.in/nrfc/index.php	The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)	^NRFC\d+$	NRFC051						False						NRFC																										
nsc	USA National Service Center Number	https://wiki.nci.nih.gov/display/NCIDTPdata/Chemical+Data	Identifier used by the Cancer Chemotherapy National Service Center.	^\d+$	27223		https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1				False							000565																									
nsf.award	National Science Foundation Award	https://www.nsf.gov/awards/about.jsp	Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research.	^\d+$	1458400		https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1				False																																
nsrrc	National Swine Resource and Research Center	http://www.nsrrc.missouri.edu/	Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]	^\d+$	0005		https://nsrrc.missouri.edu/nsrrc$1info/				False																							NSRRC									
nucc.characteristic	National Uniform Claim Committee Characteristic	https://nucc.org/index.php/code-sets-mainmenu-41/provider-characteristics-mainmenu-39	The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan.	^\d(\d|\w)$	2A						False																																
nucc.taxonomy	National Uniform Claim Committee Taxonomy	https://taxonomy.nucc.org	"The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.

The taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct ""Levels"" including Provider Grouping, Classification, and Area of Specialization.

 - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.
 - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.
 - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards."	^\d{3}\w(\w|\d_)\d{4}X$	207LH0002X						False																																
nucleardb	NucleaRDB	http://www.receptors.org/nucleardb/	NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.	^\w+\_\w+$	prgr_human	vriend@cmbi.ru.nl	http://www.receptors.org/nucleardb/proteins/$1			nuclearbd	False				NUCLEARBD								nbdc00599		nuclearbd	nuclearbd						nucleardb											
nucleotide	Nucleotide	https://www.ncbi.nlm.nih.gov/	The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.	^[a-zA-Z0-9_\.]+$	880798137		https://www.ncbi.nlm.nih.gov/nuccore/$1				False												nbdc00600		nucleotide																		insdc
nvs	NERC Vocabulary Server	https://vocab.nerc.ac.uk/collection/	SKOS concept collections held in the NERC Vocabulary Server. A concept collection is useful where a group of concepts shares something in common, and it is convenient to group them under a common label. In the NVS, concept collections are synonymous with controlled vocabularies or code lists. Each collection is associated with its governance body. An external website link is displayed when applicable.		P06		https://vocab.nerc.ac.uk/collection/$1				False																																
nxr	National Xenopus Resource	http://www.mbl.edu/xenopus/	National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). [from RRID]	^\d+$	0024		https://scicrunch.org/resolver/RRID:NXR_$1				False																							NXR									
nztcs	New Zealand Threat Classification System	https://nztcs.org.nz/	identifier for species classified under the New Zealand Threat Classification System	^[1-9]\d{2,6}$	11061		https://nztcs.org.nz/nztcs-species/$1				False																											P9889					
oa	Web Annotation Ontology	http://www.w3.org/ns/oa	The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture.		sourceDateStart		http://www.w3.org/ns/oa#$1				False	OA			oa	OA								oa																oa			
oae	Ontology of Adverse Events	https://github.com/OAE-ontology/OAE/	The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning.  OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.	^\d{7}$	0002959	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OAE_$1				False	OAE			OAE	OAE											oae	oae	OAE										Q81661725				
oarcs	Ontology of Arthropod Circulatory Systems	https://github.com/aszool/oarcs	OArCS is an ontology describing the Arthropod ciruclatory system.	^\d{7}$	0000029	mjyoder@illinois.edu	http://purl.obolibrary.org/obo/OARCS_$1				False	OARCS			OARCS	OARCS											oarcs	oarcs	OARCS										Q81661727				
oba	Ontology of Biological Attributes	https://github.com/obophenotype/bio-attribute-ontology	A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.	^(VT)?\d{7}$	0000001	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/OBA_$1				False	OBA	OBA		OBA	OBA											oba	oba	OBA										Q81661730				
oban	Open Biomedical Annotations	https://github.com/EBISPOT/OBAN	It is an ontology model used to describe associations between biomedical entities in triple format based on W3C specification. OBAN is a generic association representation model that loosely couples a subject and object (e.g. disease and its associated phenotypes supported by the source of evidence for that association) via a construction of class OBAN:association. [from GitHub]	^\w+$	provenance		http://purl.org/oban/$1	https://raw.githubusercontent.com/EBISPOT/OBAN/master/ontology/oban_core.owl			False				OBAN																												
obci	Ontology for Biomarkers of Clinical Interest	https://github.com/clinical-biomarkers/OBCI	The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects.	^\d+$	000000001	dan5@georgetown.edu	http://purl.obolibrary.org/obo/OBCI_$1	https://proteininformationresource.org/staff/nataled/OBCI/obci.owl			False																																
obcs	Ontology of Biological and Clinical Statistics	https://github.com/obcs/obcs	OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI)	^\d{7}$	0000121	jiezhen@med.umich.edu	http://purl.obolibrary.org/obo/OBCS_$1				False	OBCS			OBCS	OBCS									obcs		obcs	obcs	OBCS										Q55118544				
obi	Ontology for Biomedical Investigations	http://obi-ontology.org	The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).	^\d{7}$	0400109	bpeters@lji.org	http://purl.obolibrary.org/obo/OBI_$1		https://github.com/obi-ontology/obi/raw/master/views/obi.obo		False	OBI			OBI	OBI									obi	obi	obi	obi	OBI			obi			obi				Q7095051				
obib	Ontology for Biobanking	https://github.com/biobanking/biobanking	The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.	^\d{7}$	0000389	jmwhorton@uams.edu	http://purl.obolibrary.org/obo/OBIB_$1				False	OBIB			OBIB	OBIB											obib	obib	OBIB										Q55118499				
obo	Open Biological and Biomedical Ontologies	http://www.obofoundry.org/	The OBO namespace is the top-level namespace used by Open Biological and Biomedical Ontology (OBO) Foundry ontologies.		uberon	nicolas.matentzoglu@gmail.com	http://purl.obolibrary.org/obo/$1				False	OBO			OBO	OBO							nbdc00305	obo																			
oboe	The Extensible Observation Ontology	https://github.com/NCEAS/oboe	The Extensible Observation Ontology (OBOE) is a formal ontology for capturing the semantics of scientific observation and measurement. The ontology supports researchers to add detailed semantic annotations to scientific data, thereby clarifying the inherent meaning of scientific observations.		Characteristic	brycemecum@gmail.com	http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#$1	https://raw.githubusercontent.com/NCEAS/oboe/refs/heads/master/oboe.owl			False	OBOE	OBOE			OBOE				OBOE															oboe-core								
oboe.standard	OBOE Standard	https://github.com/NCEAS/oboe	Units in OBOE		Acre		http://ecoinformatics.org/oboe/oboe.1.2/oboe-standards.owl$1				False																																
oboinowl	OBO in OWL	https://github.com/geneontology/go-ontology/tree/master/contrib	This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties	^[\w-]+$	hasDbXref	cjmungall@lbl.gov	http://www.geneontology.org/formats/oboInOwl#$1	http://www.geneontology.org/formats/oboInOwl.owl	http://www.geneontology.org/formats/oboInOwl.obo	oboformat|oio	False				oboInOwl													oio															
obv	Austrian Library Network	https://www.obvsg.at/	The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections.	^AC[0-9]{8}$	AC00963334		https://permalink.obvsg.at/$1				False			20430											obv																		
occ	OpenCitations Corpus	https://w3id.org/oc/corpus	The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.	^[a-z][a-z]/[0-9]+$	br/1		https://w3id.org/oc/corpus/$1				False														occ	occ																	
occo	Occupation Ontology	https://github.com/Occupation-Ontology/OccO	This Occupaton Ontology (OccO) is an ontology in the domain of human occupaitons. Current OccO version is developed based on the US Bureau of Labor Statistics Standard Occupation Classification (SOC) and the related O*Net System. The OccO development follows the principles of the Open Biological and Biomedical (OBO) Foundry.	^\d+$	00000001	zhengj2007@gmail.com	http://purl.obolibrary.org/obo/OCCO_$1				False	OCCO				OCCO											occo	occo	OCCO														
ocdo	Crystallographic Defect Core Ontology	https://github.com/OCDO/cdco	The Crystallographic Defect Core Ontology (CDCO) defines the common terminology shared across all types of crystallographic defects, providing a unified framework for data integration in materials science.		hasDefectComplex	a.azocar.guzman@fz-juelich.de	http://purls.helmholtz-metadaten.de/cdos/cdco/$1	https://github.com/OCDO/cdco/raw/refs/heads/main/cdco.owl			False	OCDO				OCDO																											
oci	Open Citation Identifier	http://opencitations.net	Each OCI (Open Citation Identifier) has a simple structure: oci:<identifier>-<identifier>, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entity - see https://doi.org/10.6084/m9.figshare.7127816.v2 for additional information. In each OCI, the first <identifier> is the identifier for the citing bibliographic resource, while the second <identifier> is the identifier for the cited bibliographic resource.	^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$	01027931310-01022252312		https://opencitations.net/index/ci/$1				False				OCI										oci	oci																	
ocid	Ontology Concept Identifiers	https://ontochem.com/	"'ocid' stands for ""Ontology Concept Identifiers"" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology."	^[0-9]{12}$	190000021540		https://ocid.ontochem.com/prefname?ocid=$1				False														ocid																		
oclc	Online Computer Library Center WorldCat	https://www.oclc.org/en/about.html	The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.	^[0-9]+$	634515043		https://www.worldcat.org/oclc/$1				False				OCLC										oclc	oclc																	
odam	Open Data for Access and Mining	https://metabolome.cgfb.u-bordeaux.fr/	Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.	^[A-Za-z0-9]+$	frim1		http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1				False														odam																		
odamexplorer	ODAM Data explorer	https://eng-bfp.bordeaux-aquitaine.hub.inrae.fr/	"ODAM (Open Data for Access and Mining) is an Experimental data table management software (EDTMS) to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines.

ODAM allows datasets to be explored and then extracted in whole or in part as needed.

For more information/explanation, see ODAM User's Guide : https://inrae.github.io/ODAM/"	^[A-Za-z][A-Za-z0-9]+$	frim1		https://pmb-bordeaux.fr/dataexplorer/?ds=$1				False														odam.explorer																		
odc.sci	Open Data Commons for Spinal Cord Injury	https://odc-sci.org	The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data.	^[0-9]*$	602	jgrethe@ucsd.edu	https://odc-sci.org/data/$1				False														odc.sci								r3d100014071										
odc.tbi	Open Data Commons for Traumatic Brain Injury	https://odc-tbi.org	The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data.	^[0-9]*$	408		https://odc-tbi.org/data/$1				False														odc.tbi																		
odor	Odor Molecules DataBase	https://ordb.biotech.ttu.edu/OdorDB	OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors	^\d+$	74		https://ordb.biotech.ttu.edu/OdorDB/Data/$1				False				ODOR										odor	odor																	
odrl	Open Digital Rights Language Ontology	http://www.w3.org/ns/odrl/2	The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model.		assetConcepts		http://www.w3.org/ns/odrl/2/$1				False													odrl																			
oecd.template	OECD Harmonised Templates	https://www.oecd.org/ehs/templates/	The Organisation for Economic Co-operation and Development (OECD) Harmonised Templates (OHTs) are standard data formats for reporting information used for the risk assessment of chemicals, mainly studies done on chemicals to determine their properties or effects on human health and the environment, but also for storing data on use and exposure.	^\d+\.\d+$	74.186						False																																
oefos	Austrian Fields of Science and Technology Classification	https://vocabs.dariah.eu/oefos/en/	The Austrian Fields of Science and Technology Classification (ÖFOS 2012) is the Austrian version of the revised international Fields of Science and Technology Classification of the OECD (FOS) published in the Frascati Manual 2015 as Fields of Research and Development (FORD). These fields are adjusted to national needs, whose application for international comparisons is binding, particularly within the European Statistical System. The six major Fields of Science: Natural Sciences; Technical Sciences; Human Medicine, Health Sciences; Agricultural Sciences, Veterinary Medicine; Social Sciences and Humanities remained unchanged in comparison to ÖFOS 2002. In order to ensure international comparability, the previous 2-digit levels from 2002, which are no longer applicable, were replaced by new 3-digit levels (groups) according to the international FOS respectively FORD. These 3-digit levels were provided with further sub-groups (4-digits) taking into account the comments of the international classification. It is therefore feasible that the new Austrian Fields of Science adapt to national peculiarities of the Austrian research activities. The research area with the corresponding 6-digits in alphabetical order serves as a description of the fields of activities and research projects and/or for the coverage of the main scientific activities of a statistical unit in the research and development surveys. (Current revision status: August 2017)		509015		https://vocabs.acdh.oeaw.ac.at/oefosdisciplines/$1				False																								oefos								
oeh.educationlevel	OpenEduHub Education Level	https://github.com/openeduhub/oeh-metadata-vocabs	A list of values for class levels. Created in the context of the OpenEduHub		1		http://w3id.org/openeduhub/vocabs/educationalLevel/$1				False																																
oeo	Open Energy Ontology	https://openenergyplatform.org/ontology/	OEO is a domain reference ontology for energy system modeling.	^\d+$	00030015	mirjam.stappel@uni-osnabrueck.de	https://openenergyplatform.org/ontology/oeo/OEO_$1	https://openenergyplatform.org/ontology/oeo/dev/oeo-full.owl			False			20826																					oeo								
oerschema	OER Schema	https://oerschema.org	A RDF vocabulary for OER content on the web.		InstructionalPattern		https://oerschema.org/$1				False																																
og	Open Graph protocol	https://ogp.me	A vocabulary for embedding provenance metadata into webpages via RDFa		title		https://ogp.me/ns#$1				False													og																og			
ogc.sf	Open Geospatial Consortium Simple Features Vocabulary	https://opengeospatial.github.io/ogc-geosparql/geosparql11/sf_geometries.html	An RDF/OWL vocabulary for defining SimpleFeature geometry types		Triangle		http://www.opengis.net/ont/sf#$1				False																													sf			
ogg	The Ontology of Genes and Genomes	https://bitbucket.org/hegroup/ogg	OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets.	^\d+$	3000887619	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OGG_$1				False	OGG			OGG	OGG											ogg	ogg	OGG										Q81661736				
ogi	Ontology for genetic interval	https://code.google.com/archive/p/ontology-for-genetic-interval/	"OGI formalized the genomic element by defining an upper class 'genetic interval'.

The definition of 'genetic interval' is ""the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture."" 

Related paper:

1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)
Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)
Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)


"	^\d{7}$	0000019	linikujp@gmail.com	http://purl.obolibrary.org/obo/OGI_$1			OGI.owl	True	OGI			OGI	OGI											ogi	ogi	OGI										Q55118520				
ogms	Ontology for General Medical Science	https://github.com/OGMS/ogms	"The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.

OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."	^\d{7}$	0000031	baeverma@jcvi.org	http://purl.obolibrary.org/obo/OGMS_$1		http://purl.obolibrary.org/obo/ogms.obo	ogms/OMRE	False	OGMS		216	OGMS	OGMS											ogms	ogms	OGMS										Q55118512				
ogsf	Ontology of Genetic Susceptibility Factor	https://github.com/linikujp/OGSF	An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.	^\d{7}$	0000025	linikujp@gmail.com	http://purl.obolibrary.org/obo/OGSF_$1				True	OGSF			OGSF	OGSF											ogsf	ogsf	OGSF										Q113012672				
ohd	Oral Health and Disease Ontology	https://purl.obolibrary.org/obo/ohd/home	The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies.	^\d{7}$	0000006	wdduncan@gmail.com	http://purl.obolibrary.org/obo/OHD_$1				False	OHD			OHD	OHD											ohd	ohd	OHD										Q55118561				
ohmi	Ontology of Host-Microbiome Interactions	https://github.com/ohmi-ontology/ohmi	OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.	^\d{7}$	0000460	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OHMI_$1				False	OHMI			OHMI	OHMI											ohmi	ohmi	OHMI										Q113012673				
ohpi	Ontology of Host Pathogen Interactions	https://github.com/OHPI/ohpi	OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).	^\d+$	9001411	edong@umich.edu	http://purl.obolibrary.org/obo/OHPI_$1				False	OHPI				OHPI											ohpi	ohpi	OHPI										Q113012674				
oid	ISO Object Identifier	https://oid-base.com	OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.	^[\d.]+$	2.16.840	info@daniel-marschall.de	https://oid-base.com/get/$1				False														oid	oid																	
oidc	Solid OpenID Connect vocabulary	https://solidproject.org/TR/oidc	The OpenID Connect vocabulary used by the Solid-OIDC authentication specification		client_name						False																													oidc			
okn.sd	The Software Description Ontology	https://knowledgecaptureanddiscovery.github.io/SoftwareDescriptionOntology/release/1.9.0/index-en.html	An ontology for describing software components, including their metadata (attribution, licensing, usage instructions, how to get support) and their inputs, outputs and variables. The ontology extends schema.org and codemeta vocabularies and is based on OntoSoft, which proposed a vocabulary for describing software by asking scientists questions.		CatalogIdentifier		https://w3id.org/okn/o/sd#$1				False																								sd								
olatdv	Medaka Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv	Life cycle stages for Medaka	^\d{7}$	0000210	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/OlatDv_$1				True	OLATDV			OLATDV	OLATDV											olatdv	olatdv	OlatDv										Q81661748				
om	Ontology of units of Measure	https://github.com/HajoRijgersberg/OM	The Ontology of units of Measure (OM) 2.0 models concepts and relations important to scientific research. It has a strong focus on units, quantities, measures, and dimensions.		Dimension	hajo.rijgersberg@wur.nl	http://www.ontology-of-units-of-measure.org/resource/om-2/$1				False	OM	OM			OM												om	OM						om								
oma.grp	OMA Group	https://omabrowser.org/cgi-bin/gateway.pl	OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.	^[A-Z]+$	LCSCCPN		https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1				False				OMA.GRP										oma.grp	oma.grp																	
oma.hog	OMA HOGs	https://omabrowser.org	Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. 	^[0-9]{7}(\.[0-9a-z.]+)?(_[0-9]+)?$	0459895		https://omabrowser.org/oma/hog/HOG:$1				False														oma.hog																		
oma.protein	OMA Protein	https://omabrowser.org/oma/home/	OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.	^[A-Z0-9]{5}\d+$	HUMAN16963		https://omabrowser.org/oma/vps/$1				False				OMA.PROTEIN										oma.protein	oma.protein										OmaProtein							
omia	Online Mendelian Inheritance in Animals	https://omia.org	Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia' prefix is used for phenes, either across species (omia:001000) or in a specific species (omia:001000-9615)	^\d{6}(-\d+)?$	001000	imke.tammen@sydney.edu.au	https://omia.org/phene/omia:$1			OMIA	False				OMIA								nbdc00153		omia	omia						omia											
omia.variant	OMIA variants	https://omia.org	Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia.variant' prefix is used for genetic variants associated with phenes listed in OMIA	^\d+$	1710	imke.tammen@sydney.edu.au	https://omia.org/variant/omia.variant:$1				False				OMIA								nbdc00153																				
omiabis	Ontologized MIABIS	https://github.com/OMIABIS/omiabis-dev	An ontological version of MIABIS (Minimum Information About BIobank data Sharing)	^\d{7}$	0001079	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/OMIABIS_$1				True	OMIABIS			OMIABIS	OMIABIS											omiabis	omiabis	OMIABIS														
omid	OpenCitations Meta Identifier	http://opencitations.net/	Every entity in OpenCitations Meta (https://opencitations.net/meta) is assigned persistent internal identifier called OpenCitations Meta Identifier (OMID). The OMID has structure [[entity_type_abbreviation]]/[[supplier_prefix]][[sequential_number]]. For example, the first journal article ever processed has OMID br/0601 (the full URI is https://w3id.org/oc/meta/br/0601), where br is the abbreviation of bibliographic resource, and 060 corresponds to the supplier prefix, helpful in recognising at a glance the index it belongs to (i.e., OpenCitations Meta). Finally, 1 indicates that this is the index's first bibliographic resource ever minted.	^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$	br/0601		https://w3id.org/oc/meta/$1				False														omid																		
omim	Online Mendelian Inheritance in Man	https://omim.org/	Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.	^\d+$	603903	ahamosh@jhmi.edu	https://omim.org/MIM:$1			OMIM|mim	False	OMIM			OMIM	OMIM					1153	2.16.840.1.113883.6.174	nbdc00154		mim	mim						omim					DB-0062	P492	Q7187				
omim.ps	OMIM Phenotypic Series	https://www.omim.org/phenotypicSeriesTitles/all	A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome.	^\d+$	214100	ahamosh@jhmi.edu	https://omim.org/MIM:PS$1	https://w3id.org/biopragmatics/resources/omim.ps/omim.ps.owl	https://w3id.org/biopragmatics/resources/omim.ps/omim.ps.obo	MIMPS|OMIMPS|PS|mim.ps	False																																
omit	Ontology for MicroRNA Target	http://omit.cis.usouthal.edu/	The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).	^\d{7}$	0000069	huang@southalabama.edu	http://purl.obolibrary.org/obo/OMIT_$1		https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo	OMIT	False	OMIT			OMIT	OMIT									omit	omit	omit	omit	OMIT										Q81661752				
omo	OBO Metadata Ontology	https://github.com/information-artifact-ontology/ontology-metadata	An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).	^\d{7}$	0003003	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/OMO_$1				False	OMO				OMO											omo	omo	OMO										Q113012675				
omon	Overview of Medical Research in the Netherlands	https://onderzoekmetmensen.nl/en	The new national clinical trials registry of the Netherlands	^\d{5}$	53367		https://onderzoekmetmensen.nl/en/trial/$1				False																																
omop	Observational Medical Outcomes Partnership	https://www.ohdsi.org/data-standardization/the-common-data-model/	The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format.	^\d+$	1		https://athena.ohdsi.org/search-terms/terms/$1			OMOP	False																																
omp	Ontology of Microbial Phenotypes	http://microbialphenotypes.org	An ontology of phenotypes covering microbes	^\d{7}$	0005067	jimhu@tamu.edu	http://purl.obolibrary.org/obo/OMP_$1				False	OMP			OMP	OMP											omp	omp	OMP						omp				Q81661753				
omrse	Ontology for Modeling and Representation of Social Entities	https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview	The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.	^\d{8}$	00000022	hoganwr@gmail.com	http://purl.obolibrary.org/obo/OMRSE_$1		https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo		False	OMRSE			OMRSE	OMRSE											omrse	omrse	OMRSE										Q55118551				
omx.dataset	OncoMX Dataset	https://data.oncomx.org	OncoMX is a knowledgebase for exploring cancer biomarkers in the context of related cancer and healthy data. This resource is for datasets within OncoMX.	^\d+$	000059		https://data.oncomx.org/OMX_$1				False																																
oncotree	OncoTree	http://oncotree.mskcc.org	OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research.		BLL	SchultzN@mskcc.org	http://oncotree.mskcc.org/api/tumorTypes/search/code/$1				False																																
one	Ontology for Nutritional Epidemiology	https://github.com/cyang0128/Nutritional-epidemiologic-ontologies	An ontology to standardize research output of nutritional epidemiologic studies.	^\d{7}$	0001021	chenyangnutrition@gmail.com	http://purl.obolibrary.org/obo/ONE_$1				False	ONE				ONE											one	one	ONE										Q113014430				
ons	Ontology for Nutritional Studies	https://github.com/enpadasi/Ontology-for-Nutritional-Studies	An ontology for description of concepts in the nutritional studies domain.	^\d{7}$	0000060	francesco.vitali@ibba.cnr.it	http://purl.obolibrary.org/obo/ONS_$1				False	ONS	ONS			ONS											ons	ons	ONS										Q113014431				
ontie	Ontology for Immune Epitopes	https://ontology.iedb.org/	The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes.	^\d{7}$	0000001	bpeters@lji.org	https://ontology.iedb.org/ontology/ONTIE_$1	https://raw.githubusercontent.com/IEDB/ONTIE/master/ontie.owl			False																																
ontoavida	Ontology for Avida digital evolution platform	https://gitlab.com/fortunalab/ontoavida	"The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).

The lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.

OntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).

More information can be found at https://obofoundry.org/ontology/ontoavida.html"	^\d{8}$	00000001	fortuna@ebd.csic.es	http://purl.obolibrary.org/obo/ONTOAVIDA_$1				False	ONTOAVIDA				ONTOAVIDA											ontoavida	ontoavida	ONTOAVIDA										Q113014432				
ontodm	Ontology of Core Data Mining Entities	http://www.ontodm.com/	OntoDM-core defines the most essential data mining entities in a three-layered ontological structure comprising of a specification, an implementation and an application layer. It provides a representational framework for the description of mining structured data, and in addition provides taxonomies of datasets, data mining tasks, generalizations, data mining algorithms and constraints, based on the type of data. OntoDM-core is designed to support a wide range of applications/use cases, such as semantic annotation of data mining algorithms, datasets and results; annotation of QSAR studies in the context of drug discovery investigations; and disambiguation of terms in text mining. (from abstract)	^\d+$	000072	pance.panov@ijs.si	http://www.ontodm.com/OntoDM-core/OntoDM_$1	https://raw.githubusercontent.com/panovp/ontodm-core/master/OntoDM.owl			False					ONTODM-CORE																											
ontoneo	Obstetric and Neonatal Ontology	http://ontoneo.com	The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.	^\d{8}$	00000098	fernanda.farinelli@gmail.com	http://purl.obolibrary.org/obo/ONTONEO_$1				False	ONTONEO			ONTONEO	ONTONEO											ontoneo	ontoneo	ONTONEO										Q113014434				
ontorxn	OntoRXN	https://gitlab.com/dgarayr/ontorxn	OntoRXN is an ontology for the description of reaction networks as undirected graphs characterized by energies.		hasCalculation			https://gitlab.com/dgarayr/ontorxn/-/raw/prod/OntoRXN.owl			False																								ontorxn								
oostt	Ontology of Organizational Structures of Trauma centers and Trauma systems	https://github.com/OOSTT/OOSTT	The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2).	^\d{8}$	00000099	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/OOSTT_$1				False	OOSTT			OOSTT	OOSTT											oostt	oostt	OOSTT										Q81661760				
opb	Ontology of Physics for Biology	http://bioportal.bioontology.org/ontologies/OPB	The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.	^\d+$	00573	maxneal@gmail.com	https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1				False	OPB			OPB	OPB									opb	opb						opb											
openadr	OpenADR ontology	https://albaizq.github.io/OpenADRontology/OnToology/ontology/openADRontology.owl/documentation/index-en.html	This ontology describes the openADR protocol based on the documentation provided by the openADR Profile B		BidEnergySetpointSignal		https://w3id.org/def/openadr#$1				False																								openadr								
openalex	OpenAlex	https://openalex.org/	OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other.	^[WAICV]\d{2,}$	W2741809807	hpiwowar@gmail.com	https://openalex.org/$1				False																																
openeduhub.context	Educational Context	http://w3id.org/openeduhub/vocabs/educationalContext/	educational levels		sekundarstufe_2		http://w3id.org/openeduhub/vocabs/educationalContext/$1				False																																
openwemi	openWEMI Vocabulary	https://dcmi.github.io/openwemi/	openWEMI is a minimally constrained vocabulary for describing created resources using the concepts of Work, Expression, Manifestation, Item.	^\w+$	Endeavor	kcoyle@kcoyle.net	https://dcmi.github.io/openwemi/ns#$1				False																																
opl	Ontology for Parasite LifeCycle	https://github.com/OPL-ontology/OPL	The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc.	^\d{7}$	0000319	zhengj2007@gmail.com	http://purl.obolibrary.org/obo/OPL_$1				False	OPL			OPL	OPL									opl		opl	opl	OPL														
opm	Orientations of Proteins in Membranes Database	http://opm.phar.umich.edu/	The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.	^[0-9][A-Za-z0-9]{3}$	1h68		http://opm.phar.umich.edu/protein.php?pdbid=$1				False				OPM										opm	opm																	
opmi	Ontology of Precision Medicine and Investigation	https://github.com/OPMI/opmi	OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.	^\d{7}$	0000101	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OPMI_$1				False	OPMI				OPMI											opmi	opmi	OPMI										Q81661763				
oprlm	Orientation of Proteins in Realistic Lipid Membranes	https://oprlm.org	Orientations of Proteins in Realistic Lipid Membranes (OPRLM) is a database for visualizing proteins in realistic lipid membranes. It includes the classification of proteins into types, superfamilies, and families, and also provides information on intracellular localizations of the proteins. Identifiers represent proteins.	^\d*$	6782	wonpil@lehigh.edu	https://oprlm.org/proteins/$1				False																																
orangebook	IUPAC Compendium of Analytical Nomenclature (Orange Book)	https://media.iupac.org/publications/analytical_compendium/	The first number is the chapter then the remainder are subsections.		10.2.1.1.3						False																																
orcid	Open Researcher and Contributor	https://orcid.org	ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.	^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$	0000-0003-4423-4370	w.simpson@orcid.org	https://orcid.org/$1			ORCID|ORCiD	False			2021	ORCID										orcid	orcid												P496	Q51044				
ordb	Olfactory Receptor Database	http://senselab.med.yale.edu/OrDB/	The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).	^\d+$	8497		https://ordb.biotech.ttu.edu/ORDB/Data/$1				False				ORDB										ordb	ordb				65		ordb											
org	Core organization ontology	http://www.w3.org/TR/vocab-org/	Vocabulary for describing organizational structures, specializable to a broad variety of types of organization.		ChangeEvent		http://www.w3.org/ns/org#$1				False													org											org					org			
oridb.sacch	OriDB Saccharomyces	http://cerevisiae.oridb.org/index.php	OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.	^\d+$	1		http://cerevisiae.oridb.org/details.php?id=$1				False				ORIDB.SACCH										oridb.sacch	oridb.sacch																	
oridb.schizo	OriDB Schizosaccharomyces	http://pombe.oridb.org/index.php	OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.	^\d+$	1		http://pombe.oridb.org/details.php?id=$1				False				ORIDB.SCHIZO										oridb.schizo	oridb.schizo																	
ornaseq	Ontology of RNA Sequencing	http://kim.bio.upenn.edu/software/ornaseq.shtml	An application ontology designed to annotate next-generation sequencing experiments performed on RNA.	^\d{7}$	0000010	safisher@upenn.edu	http://purl.obolibrary.org/obo/ORNASEQ_$1		http://purl.obolibrary.org/obo/ornaseq.obo		False	ORNASEQ				ORNASEQ											ornaseq	ornaseq	ORNASEQ										Q81661765				
orpha	Orphanet	https://www.orpha.net	Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.	^C?\d+$	85163	marc.hanauer@inserm.fr	http://www.orpha.net/ORDO/Orphanet_$1	http://www.orphadata.org/data/ORDO/ordo_orphanet.owl		Orphanet|orphanet	False				Orphanet								nbdc01422		orphanet	orphanet						orphanet					DB-0068	P1550	Q929833				
orphanet.ordo	Orphanet Rare Disease Ontology	https://www.orpha.net	"The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.
It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."	^C?\d+$	C023	marc.hanauer@inserm.fr	http://www.orpha.net/ORDO/Orphanet_$1	http://www.orphadata.org/data/ORDO/ordo_orphanet.owl		ordo	False	ordo		20698	ORPHANET.ORDO	ORDO	ORDO								orphanet.ordo	orphanet.ordo		ordo															orpha
orth	Orthology Ontology	https://github.com/qfo/OrthologyOntology	The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way.		HomologyRelation	jfernand@um.es	http://purl.org/net/orth#$1	https://github.com/qfo/OrthologyOntology/raw/master/orthOntology_RC_v2_A.owl			False	ORTH				ORTH												orth															
orthodb	OrthoDB	https://www.orthodb.org	OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups	^\w+$	Q9P0K8	evgeny.zdobnov@unige.ch	http://cegg.unige.ch/orthodb/results?searchtext=$1				False				ORTHODB										orthodb	orthodb						orthodb					DB-0143					uniprot	
oryzabase.gene	Oryzabase Gene	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.	^\d+$	117		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1				False				ORYZABASE.GENE										oryzabase.gene	oryzabase.gene																	
oryzabase.mutant	Oryzabase Mutant	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.	^\d+$	21393		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1				False				ORYZABASE.MUTANT										oryzabase.mutant	oryzabase.mutant																	
oryzabase.reference	Oryzabase Reference	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.	^\d+$	42840		https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1				False														oryzabase.reference	oryzabase.reference																	
oryzabase.stage	Oryzabase Stage	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.	^\d+$	34		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1				False				ORYZABASE.STAGE										oryzabase.stage	oryzabase.stage																	
oryzabase.strain	Oryzabase Strain	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.	^\d+$	1		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1				False				ORYZABASE.STRAIN										oryzabase.strain	oryzabase.strain																	
osf	Open Science Framework ID	https://osf.io	ID in osf.io	^[a-z0-9]{5}$	2u4tf		https://osf.io/$1				False																											P7238					
oslc	OASIS Open Services for Lifecycle Collaboration Core Vocabulary	http://open-services.net/ns/core	Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains.		Property	jamsden@us.ibm.com	http://open-services.net/ns/core#$1				False													oslc																			
osti.article	Office of Scientific and Technical Information (OSTI)	https://www.osti.gov/	The U.S. Department of Energy (DOE) Office of Scientific and Technical Information (OSTI) is the main metadata archive for permanent storage of registered [DOE DOI products](https://www.osti.gov/pids/doi-services/doe-data-id-service) (datasets, code, articles, patents, multimedia, etc.). When a DOI is minted a unique OSTI identifier for each record [{osti_id}](https://www.osti.gov/api/v1/docs#endpoints-singlerecord) is provided as the suffix in the DOI schema ([{site-specific-prefix}/{user-supplied-doi-infix}/{osti_id}](https://www.osti.gov/pids/doi-services)) and can be alternatively used as the main product identifier endpoint when [searching OSTI.GOV](https://www.osti.gov/search-tools) registry archive (see example below). OSTI.GOV is the primary registry and search tool for all Department of Energy (DOE) funded science, technology, and engineering research and development (R&D) results and the organizational hub for information about the DOE Office of Scientific and Technical Information (OSTI. **Data Product Type Example:** - https://www.osti.gov/biblio/1668761 - https://www.osti.gov/search/semantic:1668761 - https://www.osti.gov/dataexplorer/biblio/dataset/1668761 - https://www.osti.gov/api/v1/records/1668761 - https://doi.org/10.11578/1668761 **Other Core Product Registry Examples:** - Journal Articles: https://www.osti.gov/pages/biblio - Datasets: https://www.osti.gov/dataexplorer/biblio/dataset/ - Software: https://www.osti.gov/doecode/biblio/ - Patents: https://www.osti.gov/doepatents/biblio/ - Multimedia: https://www.osti.gov/sciencecinema/biblio/	^\d+$	1668761		https://www.osti.gov/biblio/$1				False																											P3894					
otl	Oryza Tag Line	http://oryzatagline.cirad.fr/	Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.	^A[A-Z]+\d+$	AADB12	guiderdoni@cirad.fr	http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1				False				OTL										otl	otl						otl											
otol	Open Tree of Life	https://tree.opentreeoflife.org	Identifier for an entity in open tree of life	^[1-9]\d*$	3905431		https://tree.opentreeoflife.org/taxonomy/browse?id=$1				False																											P9157	Q22661281				
ovae	Ontology of Vaccine Adverse Events	http://www.violinet.org/ovae/	OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE).	^\d{7}$	0000609	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OVAE_$1				False	OVAE			OVAE	OVAE											ovae	ovae	OVAE										Q55118555				
owl	Web Ontology Language	https://www.w3.org/TR/owl-features/	Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages.		Ontology	rmrich5@gmail.com	http://www.w3.org/2002/07/owl#$1	https://triplydb.com/w3c/owl/download.trig.gz			False				owl								nbdc00307	owl				owl												owl			
owlstar	Ontological Interpretations for Web Property Graphs	https://linkml.io/owlstar/	This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]	^\w+$	AllSomeInterpretation	cjmungall@lbl.gov	http://w3id.org/owlstar/$1				False																																
p3db.protein	P3DB Protein	http://www.p3db.org/	Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.	^\d+$	70		http://www.p3db.org/protein.php?id=$1&amp;ref=0				False				P3DB.PROTEIN										p3db.protein	p3db.protein						p3db											
p3db.site	P3DB Site	http://www.p3db.org/	Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.	^\d+$	65		http://www.p3db.org/phosphosite.php?id=$1&ref=0				False				P3DB.SITE										p3db.site	p3db.site																	
packagist	Packagist	https://packagist.org	A repository of software packages written in PHP.		florianv/swap		https://packagist.org/packages/$1				False																																
pactr	Pan African Clinical Trials Registry	https://pactr.samrc.ac.za/	The Pan African Clinical Trials Registry (PACTR) is a regional register of clinical trials conducted in Africa. The registry is an African initiative serving the needs of Africans. It provides an open-access platform where clinical trials can be registered free of charge. The PACTR aims to increase clinical trial registration in Africa by developing awareness of the need to register trials and supporting trialists during registration. (from homepage)	^PACTR\d+$	PACTR202304525632216						False																																
pahg	Phylogenomic Analysis of Human Genome	https://www.pahgncb.com	Identifiers correspond to curated multigene families in the human genome from the Phylogenomic Analysis of Human Genome (PAHG) database, focusing on evolutionary relationships and gene duplication events across vertebrates.	^\d+$	92	baoym@big.ac.cn	https://www.pahgncb.com/genomedb/public/genefamily/$1				False																																
paleodb	Paleobiology Database	http://paleodb.org/	The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.	^\d+$	83088		http://fossilworks.org/?a=taxonInfo&taxon_no=$1				False				PALEODB										paleodb	paleodb						paleodb											
pandit	Protein and Associated NucleotideDomains with Inferred Trees	http://www.ebi.ac.uk/goldman-srv/pandit	PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains.		PF00004		http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$1				False												nbdc00607									pandit	r3d100011232									pfam	
panet	PaN Experimental technique	https://github.com/ExPaNDS-eu/ExPaNDS-experimental-techniques-ontology	The ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology provides a taxonomy and thesaurus of photon and neutron (PaN) experimental techniques. Based mainly on accelerator-based light sources and neutron facilities, the primary use of the ontology is to enhance the FAIRness of PaN data catalogues services. The ontology defines specific techniques in terms of more general technique classes and provides synonyms and references.		00001	mriyayi@hotmail.com	http://purl.org/pan-science/PaNET/PaNET$1				False	PANET				PANET																			panet								
panorama	Panorama Public	https://panoramaweb.org	Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible.		FxnI151FMs	brendanx@uw.edu	https://panoramaweb.org/$1.url				False																																
panther.family	PANTHER Family	http://www.pantherdb.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.	^PTHR\d{5}(\:SF\d{1,3})?$	PTHR12345	pdthomas@usc.edu	http://www.pantherdb.org/panther/family.do?clsAccession=$1				False				PANTHER.FAMILY										panther.family	panther.family						panther					DB-0069						
panther.node	PANTHER Node	http://pantree.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.	^PTN\d{9}$	PTN000000026		http://www.pantree.org/node/annotationNode.jsp?id=$1				False				PANTHER.NODE										panther.node	panther.node																	
panther.pathway	PANTHER Pathway	http://www.pantherdb.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.	^P\d{5}$	P00024		http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1				False				PANTHER.PATHWAY						1161				panther.pathway	panther.pathway																	
panther.pthcmp	PANTHER Pathway Component	http://www.pantherdb.org/	"The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway
components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."	^(G|P|U|C|S)\d{5}$	P00266		http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1				False				PANTHER.PTHCMP										panther.pthcmp	panther.pthcmp																	
pao	Plant Anatomy Ontology	http://www.plantontology.org				jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/PAO_$1				True				PAO												pao												Q114677904				
pass2	Protein Alignment organised as Structural Superfamily	http://caps.ncbs.res.in/pass2	The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.	^\d+$	46977		https://caps.ncbs.res.in/pass2.8/?q=superfamily/$1				True				PASS2								nbdc02108		pass2	pass2						pass2											
pathbank	PathBank	https://pathbank.org	PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.	^(SMP|PW)\d+$	SMP0000219	david.wishart@ualberta.ca	https://pathbank.org/view/$1	https://w3id.org/biopragmatics/resources/pathbank/pathbank.owl.gz	https://w3id.org/biopragmatics/resources/pathbank/pathbank.obo.gz		False												nbdc02670													Pathbank							
pathguide	Pathguide	http://pathguide.org	Pathguide contains information about 325 biological related resources and molecular interaction related resources.	^\d+$	49	gary.bader@utoronto.ca	http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1				False												nbdc00608									pathguide											
pathoplant	PathoPlant®	http://www.pathoplant.de	PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment.		MO000027		http://www.pathoplant.de/detail.php?accNo=$1				False																			333		pathoplant											
pathwaycommons	Pathway Commons	http://www.pathwaycommons.org/pc/	Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.	^\d+$	485991	chris@sanderlab.org	http://www.pathwaycommons.org/pc/record2.do?id=$1				False				PATHWAYCOMMONS										pathwaycommons	pathwaycommons						pathwaycommons	r3d100012731				DB-0253						
pato	Phenotype And Trait Ontology	https://github.com/pato-ontology/pato/	PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation.	^\d{7}$	0001998	g.gkoutos@gmail.com	http://purl.obolibrary.org/obo/PATO_$1				False	PATO	PATO		PATO	PATO									pato	pato	pato	pato	PATO			pato			pato				Q81661522				
pav	Provenance, Authoring, and Versioning Vocabulary	https://pav-ontology.github.io/pav/	PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources.	^[a-z][a-zA-Z]+$	authoredBy	stian@soiland-reyes.com	http://purl.org/pav/$1				False	PAV			pav	PAV								pav																			
paxdb.organism	PaxDb Organism	http://pax-db.org/	PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.	^\d+$	9606		http://pax-db.org/#!species/$1				False				PAXDB.ORGANISM										paxdb.organism	paxdb.organism																	
paxdb.protein	PaxDb Protein	http://pax-db.org/	PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.	^\d+$	977869		http://pax-db.org/#!protein/$1				False				PAXDB.PROTEIN										paxdb.protein	paxdb.protein																	
pazar	Pazar Transcription Factor	http://www.pazar.info/	The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.	^TF\w+$	TF0001053	wyeth@cmmt.ubc.ca	http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1				True				PAZAR								nbdc00611		pazar	pazar				521		pazar											
pba	Primate Brain Atlas	https://www.blueprintnhpatlas.org/	A controlled vocabulary to support the study of transcription in the primate brain	^\d+$	128011350		https://biopragmatics.github.io/providers/pba/$1		https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-pba.obo		False																																
pbpko	Physiologically-Based Pharmacokinetic Ontology	https://github.com/InSilicoVida-Research-Lab/pbpko	An ontology for modeling and understanding of pharmacokinetics in biological systems.		10008	saurav.kumar@iispv.cat	http://purl.obolibrary.org/obo/PBPKO_$1				False	PBPKO				PBPKO											pbpko	pbpko	PBPKO														
pcl	Provisional Cell Ontology	https://github.com/obophenotype/provisional_cell_ontology	Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.	^\d{7}$	0011124	davidos@ebi.ac.uk	http://purl.obolibrary.org/obo/PCL_$1				False	PCL				PCL											pcl	pcl	PCL										Q113014435				
pco	Population and Community Ontology	https://github.com/PopulationAndCommunityOntology/pco	The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.	^\d{7}$	0000021	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/PCO_$1		http://purl.obolibrary.org/obo/pco.obo		False	PCO	PCO		PCO	PCO				PCO							pco	pco	PCO						pco				Q55118575				
pd_st	Platynereis stage ontology	http://4dx.embl.de/platy				henrich@embl.de	http://purl.obolibrary.org/obo/PD_ST_$1				True				PD_ST												pd_st																
pdb	PDB Structure	https://www.wwpdb.org/	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.	^[0-9][A-Za-z0-9]{3}$	2gc4	harukin@protein.osaka-u.ac.jp	https://www.wwpdb.org/pdb?id=pdb_0000$1			RCSB_PDB|pdbe|pdbj|wwpdb	False				PDB						1127		nbdc00613		pdb	pdb				398		pdbj	r3d100010910			Pdb	DB-0172	P638					
pdb-ccd	Chemical Component Dictionary	https://www.ebi.ac.uk/pdbe-srv/pdbechem/	The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.	^\w{1,3}$	AB0	berman@rcsb.rutgers.edu	https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1			PDBeChem|pdbechem	False				PDB-CCD										pdb-ccd	pdb-ccd						ccd				PdbCcd							pdb.ligand
pdb.ligand	PDB ligand	http://www.rcsb.org	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.	^[A-Za-z0-9]+$	TRQ		http://www.rcsb.org/ligand/$1			PDB_CHEM_ID	False				PDB.LIGAND										pdb.ligand	pdb.ligand				169		pdbligand						P3636					
pdbsum	PDBsum; at-a-glance overview of macromolecular structures	http://www.ebi.ac.uk/pdbsum	PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.		1kfv	roman@ebi.ac.uk	https://www.ebi.ac.uk/pdbsum/$1				False												nbdc00308							461		pdbsum					DB-0119					pdb	
pdc.study	Proteomic Data Commons	https://pdc.cancer.gov/pdc	The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public.	^PDC\d+$	PDC000351		https://pdc.cancer.gov/pdc/study/$1				False																																
pdro	The Prescription of Drugs Ontology	https://github.com/OpenLHS/PDRO	An ontology to describe entities related to prescription of drugs	^\d{7}$	0010039	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/PDRO_$1				False	PDRO			PDRO	PDRO											pdro	pdro	PDRO										Q81661774				
pdumdv	Platynereis Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv	Life cycle stages for Platynereis dumerilii	^\d{7}$	0001410	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/PdumDv_$1			PdumDv	True	PDUMDV			PDUMDV	PDUMDV											pdumdv	pdumdv	PdumDv										Q81661775				
peco	Plant Experimental Conditions Ontology	http://planteome.org/	A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.	^\d{7}$	0007114	jaiswalp@science.oregonstate.edu	https://browser.planteome.org/amigo/term/PECO:$1		https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo		False	PECO	PECO		PECO	PECO				PECO							peco	peco	PECO						peco				Q81661777				
ped	Protein Ensemble Database	https://proteinensemble.org/	The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.	^PED\d{5}$	PED00037	zhangzhang@big.ac.cn	https://proteinensemble.org/$1				False												nbdc02490		ped																		
ped.ensemble	Protein Ensemble Database ensemble	https://proteinensemble.org/	The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.	^PED\d{5}e\d{3}$	PED00017e001		https://proteinensemble.org/$1				False														ped.ensemble																ped		
peff	PSI Extended File Format	https://www.psidev.info/peff		^\d{7}$	0001011		https://biopragmatics.github.io/providers/peff/$1		https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo		True																																
pennsieve	Pennsieve	https://discover.pennsieve.io	"Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a ""peer""-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. "	^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$	N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a		https://discover.pennsieve.io/package/$1				False														ps																		
pepbank	PepBank Peptide Database	http://pepbank.mgh.harvard.edu/	PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored.		21877		http://pepbank.mgh.harvard.edu/interactions/details/$1				True																			235		pepbank											
pephub	PEPhub	https://pephub.databio.org/	PEPhub is a database, web interface, and API for sharing, retrieving, and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP) biological metadata standard to store, edit, and access PEPs in one place.	^[A-Za-z0-9_\-]+(/[A-Za-z0-9_\-]+)?$	geo	nsheffield@virginia.edu	https://pephub.databio.org/$1				False																																
peptideatlas.dataset	PeptideAtlas Dataset	https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary	Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.	^PASS\d{5}$	PASS01237		http://www.peptideatlas.org/PASS/$1				False														peptideatlas.dataset	peptideatlas.dataset																	
peptideatlas.peptide	PeptideAtlas Peptide	http://www.peptideatlas.org/	The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.	^PAp[0-9]{8}$	PAp00000009	edeutsch@systemsbiology.org	https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1			peptideatlas	False				PEPTIDEATLAS						2626		nbdc01812		peptideatlas	peptideatlas						peptideatlas	r3d100010889				DB-0071						
perkinelmer	PerkinElmer cell line collection	https://www.perkinelmer.com/	Cell line collections (Providers)		SCC111		https://www.perkinelmer.com/searchresult?searchName=$1				False						PerkinElmer																										
peroxibase	Peroxibase	https://peroxibase.toulouse.inra.fr/	Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.	^\d+$	5282	dunand@lrsv.ups-tlse.fr	https://redoxibase.toulouse.inrae.fr/display_perox/view_perox/$1				False				PEROXIBASE								nbdc01869		peroxibase	peroxibase						peroxibase					DB-0072						
pesticideinfo	PesticideInfo chemical ID	https://www.pesticideinfo.org	chemical in the database supplied by Pesticide Action Network North America	^PRI\d*$	PRI10		https://www.pesticideinfo.org/chemical/$1				False																											P11949					
pesticides	Alan Wood's Pesticides	http://www.alanwood.net/pesticides	The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients.		derivatives%2Fthiocyclam%20hydrochloride		http://www.alanwood.net/pesticides/$1.html				False																																
pfam	Pfam protein family	https://www.ebi.ac.uk/interpro/	The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.	^PF\d{5}$	PF11779	agb@ebi.ac.uk	https://www.ebi.ac.uk/interpro/entry/pfam/$1	https://w3id.org/biopragmatics/resources/pfam/pfam.owl	https://w3id.org/biopragmatics/resources/pfam/pfam.obo	PF	False				PFAM						1138		nbdc00163		pfam	pfam						pfam	r3d100012850			Pfam	DB-0073	P3519					
pfam.clan	Pfam protein clan	https://pfam.xfam.org	Higher order grouping of Pfam families	^CL\d+$	CL0192	agb@ebi.ac.uk	https://www.ebi.ac.uk/interpro/set/pfam/$1	https://w3id.org/biopragmatics/resources/pfam.clan/pfam.clan.owl	https://w3id.org/biopragmatics/resources/pfam.clan/pfam.clan.obo		False										2758																						
pfr	Proteoform Atlas	http://repository.topdownproteomics.org/proteoforms	Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets.	^\d+$	1001		http://repository.topdownproteomics.org/proteoforms/$1			TDR	False																						r3d100012385										
pgdso	Plant Growth and Development Stage	http://www.plantontology.org				po-discuss@plantontology.org	http://purl.obolibrary.org/obo/PGDSO_$1				True				PGDSO												pgdso												Q114677907				
pgs	Polygenic Score Catalog	http://pgscatalog.org	The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.	^PGS[0-9]{6}$	PGS000018		https://www.pgscatalog.org/pgs/$1				False														pgs																		
pgx	Progenetix	https://progenetix.org/	"The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt ""neoplasm"" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs."	^\w{3,15}[-_]\w[\w.-]{3,128}$	pgxbs-kftva5zv	mbaudis@me.com	https://progenetix.org/services/ids/$1			Progenetix	False				PGX		Progenetix								pgx	pgx							r3d100012820										
phagedive	PhageDive	https://phagedive.dsmz.de	PhageDive is a database for bacteriophages and archaeal viruses. It provides information regarding taxonomy, host strain, phage morphology, life cycle, origin and genomic data.	^\d+$	3	johannes.wittmann@dsmz.de	https://phagedive.dsmz.de/strain/$1				False																						r3d100014540										
pharmacodb.cell	PharmacoDB Cells	https://pharmacodb.ca/cell_lines	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line.		22RV1_12_2019		https://pharmacodb.ca/cell_lines/$1				False						PharmacoDB																										
pharmacodb.dataset	PharmacoDB Datasets	https://pharmacodb.ca/datasets	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset.	^\d+$	1		https://pharmacodb.ca/datasets/$1				False																																
pharmacodb.tissue	PharmacoDB Tissues	https://pharmacodb.ca/tissues	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue.	^\d+$	13		https://pharmacodb.ca/tissues/$1				False																																
pharmgkb.disease	PharmGKB Disease	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\d+$	PA447218	teri.klein@stanford.edu	http://www.pharmgkb.org/disease/$1	https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.owl	https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.obo		False				PHARMGKB.DISEASE						2651				pharmgkb.disease	pharmgkb.disease						pharmgkb.disease						P7001					
pharmgkb.drug	PharmGKB Drug	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\d+$	PA448710	teri.klein@stanford.edu	http://www.pharmgkb.org/drug/$1	https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.owl	https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.obo		False				PHARMGKB.DRUG						2652				pharmgkb.drug	pharmgkb.drug						pharmgkb.drug						P7001					
pharmgkb.gene	PharmGKB Gene	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\w+$	PA131	teri.klein@stanford.edu	http://www.pharmgkb.org/gene/$1	https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.owl	https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.obo		False				PHARMGKB.GENE	PHARMGKB									pharmgkb.gene	pharmgkb.gene						pharmgkb.gene					DB-0074	P7001					
pharmgkb.pathways	PharmGKB pathway	http://www.pharmgkb.org/	"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. 
PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."	^PA\d+$	PA146123006	teri.klein@stanford.edu	http://www.pharmgkb.org/pathway/$1	https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.owl	https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.obo		False				PHARMGKB.PATHWAYS						2650				pharmgkb.pathways	pharmgkb.pathways						pharmgkb.pathways						P7001					
pharmgkb.variant	PharmGKB Variant	https://www.pharmgkb.org	SNPs and other variants that can be mapped to dbSNP.	^PA\d+$	PA166156302	teri.klein@stanford.edu	https://www.pharmgkb.org/variant/$1	https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.owl	https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.obo		False																																
pharmvar	Pharmacogene Variation Consortium	https://www.pharmvar.org	The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository.  The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium.		CYP2A6	agaedigk@cmh.edu	https://www.pharmvar.org/gene/$1				False																					pharmvar										hgnc.symbol	
phenolexplorer	Phenol-Explorer	http://www.phenol-explorer.eu/foods/	Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.	^\d+$	75		http://phenol-explorer.eu/foods/$1				False				PHENOLEXPLORER										phenolexplorer	phenolexplorer							r3d100012197										
phenx	PhenX Toolkit	https://www.phenxtoolkit.org/	A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants.	^\d+$	130502	yingqin@rti.org	https://www.phenxtoolkit.org/protocols/view/$1			phenxtoolkit	False	PHENX				PHENX							nbdc02244																				
phipo	Pathogen Host Interaction Phenotype Ontology	https://github.com/PHI-base/phipo	Ontology of species-neutral phenotypes observed in pathogen-host interactions.	^\d{7}$	0000001	alayne.cuzick@rothamsted.ac.uk	http://purl.obolibrary.org/obo/PHIPO_$1				False	PHIPO				PHIPO											phipo	phipo	PHIPO										Q81661779				
phosphopoint.kinase	PhosphoPoint Kinase	http://kinase.bioinformatics.tw/	PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.	^\w+$	AURKA		http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1				False				PHOSPHOPOINT.KINASE										phosphopoint.kinase	phosphopoint.kinase																	
phosphopoint.protein	PhosphoPoint Phosphoprotein	http://kinase.bioinformatics.tw/	PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.	^\w+$	AURKA		http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0				True				PHOSPHOPOINT.PROTEIN										phosphopoint.protein	phosphopoint.protein																	
phosphosite.curation	PhosphoSite Curation	https://www.phosphosite.org	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to curation records that collect information extracted from specific publications.	^\d+$	34665743		https://www.phosphosite.org/curatedInfoAction.action?record=$1				False																																
phosphosite.protein	PhosphoSite Protein	http://www.phosphosite.org/homeAction.do	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.	^\d{5}$	12300		http://www.phosphosite.org/proteinAction.do?id=$1				False				PHOSPHOSITE.PROTEIN										phosphosite.protein	phosphosite.protein																	
phosphosite.residue	PhosphoSite Residue	http://www.phosphosite.org/homeAction.do	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.	^\d+$	2842		http://www.phosphosite.org/siteAction.do?id=$1				False				PHOSPHOSITE.RESIDUE										phosphosite.residue	phosphosite.residue																	
phosphosite.sitegroup	PhosphoSite Site Group	https://www.phosphosite.org	Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur.	^\d+$	447860						False																																
phrr	Philippine Health Research Registry	https://registry.healthresearch.ph	The Philippine Health Research Registry (PHRR), managed by the Philippine Council for Health Research and Development, is a tool for good governance to promote transparency and accountability in health research. PHRR is a publicly accessible database on newly approved health researches. It includes clinical trials and non-clinical studies conducted in the Philippines. The registry is compliant with the World Health Organization (WHO) standard for clinical trials registry. [from website]		4195		https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1				False																																
phylomedb	PhylomeDB	http://phylomedb.org/	PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.	^\w+$	Phy000CLXM_RAT	toni.gabaldon@crg.eu	http://phylomedb.org/?seqid=$1				False				PHYLOMEDB								nbdc01764		phylomedb	phylomedb						phylomedb					DB-0144						
physh	Physics Subject Headings	https://physh.aps.org/	"PhySH (Physics Subject Headings) is a physics classification scheme developed by the American Physical Society to organize journals, meetings, and other content by topic. The development of PhySH is motivated by the lack of a fully open, high quality classification scheme for physics. It is intended initially to meet the specific goals of the APS for our journal, meeting, and other content. A longer term goal is to make it available for use by the broader community. (...) Right now, the main use of PhySH is to classify manuscripts within the APS peer-review process and, ultimately, published journal articles. The assigned concepts will be used for ensuring articles are routed to the most appropriate handling editor who is knowledgeable in that area. They also help editors in finding similar articles previously submitted and in finding suitable referees.

As one might expect with something so new, the refinement of PhySH is still very much underway. The facets and disciplines have been identified and almost 3,000 concepts have been added to PhySH through an iterative process that is still ongoing. Many APS journal editors are involved in this process, primarily by lending their expertise in the various subfields in physics. The assignment of concepts to the various facets can be rather subjective. Thus, we expect to make many adjustments to PhySH as we receive feedback from the community (especially authors using PhySH to classify their submissions) and as we incorporate PhySH into the APS journal websites. As we iteratively refine PhySH over the coming months, the rate of new concept additions, concept reassignments within facets, and new relationships among concepts should abate significantly."	^[0-9a-z-]+$	0003fc3f-1522-4fca-bf3f-bcef0dcec405		https://doi.org/10.29172/$1				False			1899																					physh								
phytozome.locus	Plant Genome Network	http://www.phytozome.net/	Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.	^[A-Za-z0-9]+$	Glyma0021s00410		http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1			JGI Phytozome	False				PHYTOZOME.LOCUS										phytozome.locus	phytozome.locus																	
pibase	Database of structurally defined protein interfaces	http://salilab.org/pibase	PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected.		21692		http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1				False																			183		pibase											
pictar	PicTar	https://pictar.mdc-berlin.de/			hsa-let-7a					pictar-vert	True																																
pid.pathway	NCI Pathway Interaction Database: Pathway	https://www.ndexbio.org/index.html#/networkset/8a2d7ee9-1513-11e9-bb6a-0ac135e8bacf	The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.	^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$	eff796f3-6195-11e5-8ac5-06603eb7f303	schaefec@mail.nih.gov	http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1	https://w3id.org/biopragmatics/resources/pid.pathway/pid.pathway.owl	https://w3id.org/biopragmatics/resources/pid.pathway/pid.pathway.obo	pid	True				PID.PATHWAY						2344				pid.pathway	pid.pathway				119		pid											
pigqtldb	Animal Genome Pig QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.	^\d+$	14		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False				PIGQTLDB										pigqtldb	pigqtldb						pigqtldb									qtldb		
pii	Publisher Item Identifier	https://en.wikipedia.org/wiki/Publisher_Item_Identifier	A combination of an ISBN and local unique identifier for articles and other published works. Please see the [Wikipedia page](https://en.wikipedia.org/wiki/Publisher_Item_Identifier) for a detailed explanation. Some PIIs are used as the local identifiers in DOIs, such as https://doi.org/10.1136/S0003-4967(24)38620-0.	^((S\d{4}-\d{4}\(\d{2}\)\d{5})|(B\d-\d{3}-\d{5}-\d/\d{5}))-[\d|X]$	S0960-9822(11)01319-4						False																																
pina	Protein Interaction Network Analysis	https://omics.bjcancer.org/pina/	Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q13485	wujm@bjmu.edu.cn	http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1				False				PINA										pina	pina				348												uniprot	
piroplasma	PiroplasmaDB	http://piroplasmadb.org/	PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^TA\d+$	TA14985		http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False				PIROPLASMA										piroplasma	piroplasma																	
pirsf	PIR Superfamily Classification System	https://pir.georgetown.edu/	The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.	^PIRSF\d{6}$	PIRSF000100	wuc@udel.edu	https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1				False				PIRSF						1136				pirsf	pirsf						pirsf					DB-0079						
pkdb	PK-DB	https://www.hu-berlin.de/?set_language=en&cl=en	PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. 	^PKDB[0-9]{5}$	PKDB00198	konigmatt@googlemail.com	https://pk-db.com/data/$1				False														pkdb																		
plana	Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology	https://github.com/obophenotype/planaria-ontology	PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.	^\d{7}$	0000001	smr@stowers.org	http://purl.obolibrary.org/obo/PLANA_$1				False	PLANA			PLANA	PLANA											plana	plana	PLANA										Q81661781				
planp	Planarian Phenotype Ontology	https://github.com/obophenotype/planarian-phenotype-ontology	Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.	^\d+$	0000001	smr@stowers.org	http://purl.obolibrary.org/obo/PLANP_$1				False	PLANP				PLANP											planp	planp	PLANP										Q81661782				
plant_reactome	Plant Reactome	https://www.gramene.org	PLANT REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Pathway annotations are authored by expert biologists, in collaboration with the Reactome editorial staff and cross-referenced to many bioinformatics databases. These include project databases like Gramene, Ensembl, UniProt, ChEBI small molecule databases, PubMed, and Gene Ontology.	^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$	R-ACH-1120024		https://plantreactome.gramene.org/content/detail/$1				False														plant_reactome					587													
planttfdb	Plant Transcription Factor Database	http://planttfdb.cbi.pku.edu.cn	The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.	^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$	Ath_AT1G01030.1	gaog@mail.cbi.pku.edu.cn	http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1				False				PLANTTFDB										planttfdb	planttfdb				497		planttfdb	r3d100011301										
plasmodb	PlasmoDB	http://plasmodb.org/plasmo/	AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	PF11_0344	oharb@upenn.edu	http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1			ApiDB_PlasmoDB	False				PLASMODB								nbdc01783		plasmodb	plasmodb				514		plasmodb	r3d100011569										
plastchem	PlastChem	https://plastchem-project.org/documentation/	A database of chemicals relevant for plastics and polymer sciences.	^\d+$	1	martin.wagner@ntnu.no					False																																
plo	Plasmodium Life Cycle	http://www.sanger.ac.uk/Users/mb4/PLO/				mb4@sanger.ac.uk	http://purl.obolibrary.org/obo/PLO_$1				True				PLO												plo												Q114677908				
plos	PLOS Thesaurus	http://journals.plos.org	An ontologization of Public Library of Science (PLOS) journal keywords and topics. It's not clear how the IDs correspond to the actual pages. Appears in ADCAD.	^\d+$	1443	subjectareas@plos.org	http://localhost/plosthes.2017-1#$1			PLOSTHES	False	PLOSTHES				PLOSTHES																											
pmads	PMADS	https://pmads-db.org	Identifiers correspond to curated and proteomics-inferred associations between protein post-translational modifications (PTM) and drug sensitivity.	^acc\d{4}$	acc0079	wanglab.tj@outlook.com	https://pmads-db.org/result/?id=$1				False																																
pmap.cutdb	CutDB	http://cutdb.burnham.org	The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).	^\d+$	25782	adam@burnham.org	http://cutdb.burnham.org/relation/show/$1				True				PMAP.CUTDB										pmap.cutdb	pmap.cutdb						pmap.cutdb											
pmap.substratedb	SubstrateDB	http://substrate.burnham.org/	The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.	^\d+$	1915	eroshkin@burnham.org	http://substrate.burnham.org/protein/annotation/$1/html				False				PMAP.SUBSTRATEDB										pmap.substratedb	pmap.substratedb						pmap.substratedb											
pmc	PubMed Central	http://europepmc.org/	PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.	^PMC\d+(\.\d+)?$	PMC3084216	beck@ncbi.nlm.nih.gov	http://europepmc.org/articles/$1			PMC|PMCID	False				PMCID		PMCID								pmc	pmc						pmc				Pmc		P932	Q11801904				
pmdb	Protein Model Database	https://bioinformatics.cineca.it/PMDB/	The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.	^PM\d{7}$	PM0012345		https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1				False				PMDB										pmdb	pmdb						pmdb											
pmdco	Platform Material Digital Core Ontology	https://materialdigital.github.io/core-ontology/	The PMD Core Ontology (PMDco) is a comprehensive framework for representing knowledge that encompasses fundamental concepts from the domains of materials science and engineering (MSE). The PMDco has been designed as a mid-level ontology to establish a connection between specific MSE application ontologies and the domain neutral concepts found in established top-level ontologies. The primary goal of the PMDco is to promote interoperability between diverse domains. PMDco's class structure is both understandable and extensible, making it an efficient tool for organizing MSE knowledge. It serves as a semantic intermediate layer that unifies MSE knowledge representations, enabling data and metadata to be systematically integrated on key terms within the MSE domain. With PMDco, it is possible to seamlessly trace data generation. By building on this foundation, PMDco facilitates the integration of data from various sources and the creation of complex workflows. In summary, PMDco is a valuable tool for researchers and practitioners in the MSE domains. It provides a common language for representing and sharing knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless traceability of data generation. Overall, PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain. PMDco at GitHub: https://github.com/materialdigital/core-ontology Documentation: https://materialdigital.github.io/core-ontology/docs/		0000000		https://w3id.org/pmd/co/PMD_$1				False																								pmd								
pmp	Protein Model Portal	http://www.proteinmodelportal.org/	The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q0VCA6	torsten.schwede@unibas.ch	http://www.proteinmodelportal.org/query/uniprot/$1				True				PMP										pmp	pmp				438		pmp										uniprot	
pmr.exposure	Physical Medicine and Rehabilitation	https://www.auckland.ac.nz/en.html	Resource for the community to store, retrieve, search, reference, and reuse CellML models.	^[a-z0-9]{32,32}$	ebf69ca24298b28b2361e7d43eb52d6c	laia.subirats@gmail.com	https://models.physiomeproject.org/exposure/$1			pmr	False	PMR				PMR									pmr																		
pmr.workspace	Physiome Model Repository workspace	https://www.auckland.ac.nz/en.html	Workspace (Git repository) for modeling projects managed by the Physiome Model Repository	^[a-zA-Z0-9_\-]+(/.*?)?$	modularmassactionprimer		https://models.physiomeproject.org/workspace/$1				False														pmr.workspace																		
po	Plant Ontology	http://browser.planteome.org/amigo	The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.	^\d+$	0009089	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/PO_$1				False	PO	PO		PO	PO	PO				1180				po	po	po	po	PO			po			po				Q7201529				
pocketome	Pocketome	http://www.pocketome.org/sfSearch.cgi?act=browseall	Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.	^[A-Za-z_0-9]+$	1433C_TOBAC_1_252	ikufareva@ucsd.edu	http://www.pocketome.org/files/$1.html				False				POCKETOME										pocketome	pocketome				537													
polbase	PolBase	http://polbase.neb.com/	Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.	^[A-Za-z-0-9]+$	19-T4	lreha@ualberta.ca	https://polbase.neb.com/polymerases/$1#sequences				False				POLBASE								nbdc02079		polbase	polbase																	
polymat	PolyMat Ontology	https://gitlab.com/dlr-dw/poly-ontologies/polymat-ontology	PolyMat is a domain ontology designed for polymer membrane research and tailored for immediate integration within Electronic Laboratory Notebooks (ELNs), facilitating efficient documentation of laboratory experiments and advancing the domain's FAIRification process.		4PointResistanceSetup		https://w3id.org/polymat/$1				False																								pmat								
polytraits.trait	Polytraits Trait Definitions	http://polytraits.lifewatchgreece.eu/terms	Reproductive and behavioural traits of both adult and larval stages, as well as information on environmental preferences and a few morphological traits.		PRED		http://polytraits.lifewatchgreece.eu/traitspublic_traitdefinitions.php#$1				False																																
pombase	PomBase	https://www.pombase.org/	PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.	^S\w+(\.)?\w+(\.)?$	SPCC13B11.01	vw253@cam.ac.uk	https://www.pombase.org/gene/$1	https://w3id.org/biopragmatics/resources/pombase/pombase.owl	https://w3id.org/biopragmatics/resources/pombase/pombase.obo	PomBase	False				PomBase								nbdc00332		pombase	pombase						pombase	r3d100011478				DB-0031	P6245					
poro	Porifera Ontology	https://github.com/obophenotype/porifera-ontology	An ontology describing the anatomical structures and characteristics of Porifera (sponges)	^\d{7}$	0000550	robert.thacker@stonybrook.edu	http://purl.obolibrary.org/obo/PORO_$1				False	PORO			PORO	PORO				PORO							poro	poro	PORO										Q55118578				
ppdb	Pesticide Properties DataBase	https://sitem.herts.ac.uk/aeru/ppdb/	PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties.	^\d+$	1484	ppdb@gifu-u.ac.jp	https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm				False												nbdc01041																				
ppeo	Plant Phenotype Experiment Ontology	http://purl.org/ppeo	The Plant Phenotyping Experiment Ontology (PPEO) is an implementation of the Minimal Information About Plant Phenotyping Experiment. It lists and organises all the informations necessary to describe and reuse a phenotyping dataset following FAIR principles (Findable Interoperable Accessible Reusable). It has been initiated with experts from Elixir, Emphasis, Bioversity International - CGIAR and RDA.		GPS_location	cyril.pommier@inrae.fr	http://purl.org/ppeo/PPEO.owl#$1				False		PPEO																						ppeo								
ppo	Plant Phenology Ontology	https://github.com/PlantPhenoOntology/PPO	An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.	^\d{7}$	0002058	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/PPO_$1				False	PPO	PPO		PPO	PPO											ppo	ppo	PPO						ppo				Q65057180				
ppr	Europe PMC Preprints	https://europepmc.org/Preprints	Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000.	^PPR\d+$	PPR103739		https://europepmc.org/article/ppr/$1				False																																
pr	Protein Ontology	http://proconsortium.org	The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.	^(?:\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\d+)?)$	000000024	dan5@georgetown.edu	http://purl.obolibrary.org/obo/PR_$1			PR|PRO	False	PR	PR		PR	PR							nbdc01630	pr	pr	pr	pr	pr	PR			pr					DB-0181	P4926	Q55118584				
prefer	PREFER Ontology	https://github.com/Multiomics-Analytics-Group/prefer_ontology	An ontology for PREcision FERmentation.		0000020	txellmgsol@gmail.com					False	PREFER				PREFER												prefer															
prefixcommons	Prefix Commons	https://prefixcommons.org	A registry of life science prefxes		ChEBI		https://bioregistry.io/metaregistry/prefixcommons/$1				False																																
premis	PREMIS 3 Ontology	https://id.loc.gov/ontologies/premis-3-0-0.html	Ontology for PREMIS 3, the international standard for metadata to support the preservation of digital objects and ensure their long-term usability.		Agent		http://www.loc.gov/premis/rdf/v3/$1			premis3	False													premis											premis3								
pride	Proteomics Identification Database Ontology	https://github.com/PRIDE-Utilities/pride-ontology	The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.	^\d{7}$	0000006	yperez@ebi.ac.uk	http://purl.obolibrary.org/obo/PRIDE_$1				True	PRIDE			PRIDE								nbdc00630		pride	pride		pride				pride	r3d100010137				DB-0130						
pride.project	PRIDE Project	https://www.ebi.ac.uk/pride/	The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.	^P(X|R|A)D\d{6}$	PXD000440		https://www.ebi.ac.uk/pride/archive/projects/$1				False				PRIDE.PROJECT		PRIDE								pride.project	pride.project																	
prints	PRINTS compendium of protein fingerprints	http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/	PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.	^PR\d{5}$	PR00001	teresa.k.attwood@manchester.ac.uk	http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false&regexpr=off			sprint	True				PRINTS								nbdc00039		prints	prints						sprint					DB-0082						
probesanddrugs	Probes and Drugs	https://www.probes-drugs.org	The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation.	^PD\d{6}$	PD000596	ctibor.skuta@img.cas.cz	https://www.probes-drugs.org/compound/$1				False																											P11199					
probonto	Probability Distribution Ontology	http://probonto.org	ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.	^(c|k)\d{7}$	c0000005	pierre.grenon@ifomis.uni-saarland.de	http://www.probonto.org/ontology#PROB_$1				False				PROBONTO										probonto	probonto		probonto															
proco	Process Chemistry Ontology	https://github.com/proco-ontology/PROCO	PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry.	^\d{7}$	0000001	wes_schafer@merck.com	http://purl.obolibrary.org/obo/PROCO_$1				False	PROCO				PROCO											proco	proco	PROCO						proco				Q113014436				
prodom	ProDom	http://prodom.prabi.fr/prodom/current/html/home.php	ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.	^PD\d+$	PD10000	Daniel.Kahn@toulouse.inra.fr	http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1				True				PRODOM								nbdc00174		prodom	prodom						prodom											
proglyc	ProGlycProt	http://www.proglycprot.org/	ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.	^[A-Z]C\d{1,3}$	AC119		http://www.proglycprot.org/detail.aspx?ProId=$1				True				PROGLYC										proglyc	proglyc																	
propreo	Proteomics data and process provenance	http://lsdis.cs.uga.edu/projects/glycomics/propreo/	A comprehensive proteomics data and process provenance ontology.		protein	satyasahoo@ieee.org	http://purl.obolibrary.org/obo/PROPREO_$1				True	PROPREO			PROPREO	PROPREO											propreo					propreo							Q114677909				
pror	PRO Research: An ontology for describing RDM-Policies in a structured way	http://w3id.org/nfdi4ing/pro-research	PRO Research: An ontology for describing RDM-Policies in a structured way		isReferencedByPolicy	tobias.hamann@wzl-iqs.rwth-aachen.de	http://w3id.org/nfdi4ing/pro-research#$1				False																								pror								
prosite	PROSITE	https://www.expasy.org/prosite/	PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.	^PS\d{5}$	PS00001	Ioannis.Xenarios@unil.ch	https://prosite.expasy.org/$1				False				PROSITE								nbdc00241		prosite	prosite						prosite				Prosite	DB-0084	P4355					
protclustdb	ProtClustDB	https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters	ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.	^\w+$	O80725	klimke@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1				False				PROTCLUSTDB										protclustdb	protclustdb						protclustdb											
protcom	Database of protein-protein complexes	http://www.ces.clemson.edu/compbio/protcom	This database is a collection of protein-protein homo- and hetero-complexes as well as domain-domain structures. This issue of the database contains 17.024 entries (as of October 2007) of which 1350 are two-chain protein hetero-complexes, 7773 homodimers and 1589 are one-chain proteins parsed into two domains (domain structures).		12e8LH		http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$1				True																			242		protcom											
protege	Protege Ontology	http://protege.stanford.edu	An ontology of metadata from protege		defaultLanguage		http://protege.stanford.edu/plugins/owl/protege#$1				False																																
proteomicsdb.peptide	ProteomicsDB Peptide	https://www.proteomicsdb.org/#peptideSearch	ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.	^\d+$	53504		https://www.proteomicsdb.org/#human/proteinDetails/$1				False				PROTEOMICSDB.PEPTIDE										proteomicsdb.peptide	proteomicsdb.peptide																	
proteomicsdb.protein	ProteomicsDB Protein	https://www.proteomicsdb.org/#human	ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.	^\d+$	53504		https://www.proteomicsdb.org/#human/proteinDetails/$1/summary				False				PROTEOMICSDB.PROTEIN										proteomicsdb.protein	proteomicsdb.protein																	
protonet.cluster	ProtoNet Cluster	http://www.protonet.cs.huji.ac.il/	ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.	^\d+$	4349895	michall@cc.huji.ac.il	http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1				True				PROTONET.CLUSTER										protonet.cluster	protonet.cluster						protonet.cluster											
protonet.proteincard	ProtoNet ProteinCard	http://www.protonet.cs.huji.ac.il/	ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information.	^\d+$	16941567	michall@cc.huji.ac.il	http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1				True				PROTONET.PROTEINCARD										protonet.proteincard	protonet.proteincard						protonet.proteincard											
prov	PROV Namespace	https://www.w3.org/ns/prov	The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web.		Activity		http://www.w3.org/ns/prov#$1				False	PROV			prov									prov				prov							prov					prov			
pscdb	Protein Structural Change Database	http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html	The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion.	^\d+$	051	mota@i.nagoya-u.ac.jp	http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html				False				PSCDB								nbdc01636		pscdb	pscdb																	
psdo	Performance Summary Display Ontology	https://github.com/Display-Lab/psdo	"Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).

Landis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. International Conference on Biomedical Ontology 2022 (ICBO 2022). https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_2172.pdf"	^\d{7}$	0000055	zachll@umich.edu	http://purl.obolibrary.org/obo/PSDO_$1				False	PSDO				PSDO											psdo	psdo	PSDO										Q81661788				
pseudogene	PseudoGene	http://www.pseudogene.org	This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.		PGOHUM00000289843	mark@gersteinlab.org	https://bioregistry.io/pseudogene:$1			pseudogene.org	True					pseudo							nbdc00178									pseudogene							Q7254809				
pseudomonas	Pseudomonas Genome Database	http://www.pseudomonas.com/	The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.	^P\w+$	PSEEN0001		http://www.pseudomonas.com/feature/show/?locus_tag=$1				False				PSEUDOMONAS										pseudomonas	pseudomonas																	
psipar	Protein Affinity Reagents	https://www.psidev.info/psi-par	Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.	^\d+$	0116		https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1				True				PSIPAR										psipar	psipar																	
pso	Plant Stress Ontology	https://github.com/Planteome/plant-stress-ontology	The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.	^\d{7}$	0000013	cooperl@oregonstate.edu	http://purl.obolibrary.org/obo/PSO_$1				False	PSO	PSO			PSO											pso	pso	PSO						pso				Q113014437				
pspub	Phenoscape Publication	https://wiki.phenoscape.org/wiki/Curation_workflow	Documentation of the Phenoscape Curation Workflow								False																																
psskb	Protein Structure and Stability Knowledge Base	https://psskb.org/	PSSKB allows researchers to model post translational modifications and amino acid substitutions in proteins, providing 3D structural representations. Identifiers represent protein motifs on which PSSKB provides data.	^[A-Za-z0-9_]+$	2VM6_A55_A135	kaysheva1@gmail.com	https://psskb.org/motif/card/$1				False																																
pto	Product Types Ontology	http://www.productontology.org/	Identifiers for product types (product, price, and company data) based on Wikipedia		Atlas		http://www.productontology.org/id/$1				False																																
ptr	Pointer Methods in RDF	https://www.w3.org/TR/Pointers-in-RDF/	This specification contains a framework for representing pointers - entities that permit identifying a portion or segment of a piece of content - making use of the Resource Description Framework (RDF). It also describes a number of specific types of pointers that permit portions of a document to be referred to in different ways. When referring to a specific part of, say, a piece of web content, it is useful to be able to have a consistent manner by which to refer to a particular segment of a web document, to have a variety of ways by which to refer to that same segment, and to make the reference robust in the face of changes to that document. This specification is part of the Evaluation And Report Language (EARL) but can be reused in other contexts too. [from homepage]		Pointer		https://www.w3.org/2009/pointers#$1				False																																
pubchem.bioassay	NCBI PubChem database of bioassay records	https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.	^\d+$	1018	pruitt@ncbi.nlm.nih.gov	https://pubchem.ncbi.nlm.nih.gov/bioassay/$1			pubchem.aid|pubchem.assay	False				PUBCHEM.BIOASSAY						2638		nbdc00640		pubchem.bioassay	pubchem.bioassay						pubchem.bioassay											
pubchem.cell	PubChem Cell Line	https://pubchem.ncbi.nlm.nih.gov	Cell Lines in PubChem	^\d+$	31		https://pubchem.ncbi.nlm.nih.gov/cell/$1				False																																
pubchem.classification	PubChem Classification	https://pubchem.ncbi.nlm.nih.gov/classification/	The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records.	^\d+$	87		https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1				False																																
pubchem.compound	PubChem compound	https://pubchem.ncbi.nlm.nih.gov/	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.	^\d+$	100101	bolton@ncbi.nlm.nih.gov	https://pubchem.ncbi.nlm.nih.gov/compound/$1			CID|DSSTox_CID|PUBCHEM_CID|PubChem_Compound_CID|Pubchem|pubchem_id	False				PUBCHEM.COMPOUND		PubChem	000140			2639		nbdc02626		pubchem.compound	pubchem.compound				361		pubchem.compound	r3d100010129			PubchemCompound		P662					
pubchem.element	PubChem Element	https://pubchem.ncbi.nlm.nih.gov/periodic-table	PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number.	^\d+$	1		https://pubchem.ncbi.nlm.nih.gov/element/$1				False																																
pubchem.substance	PubChem Substance ID (SID)	https://pubchem.ncbi.nlm.nih.gov/	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records.	^\d+$	100101		https://pubchem.ncbi.nlm.nih.gov/substance/$1			DSSTox_Generic_SID	False				PUBCHEM.SUBSTANCE			000141					nbdc00642		pubchem.substance	pubchem.substance						pubchem.substance				PubchemSubstance		P2153					
publons.publication	Publons publication	https://publons.com	identifier for the defunct/merged Publons website; URL redirects to Web of Science's P8372 (WOSID)		18466622		https://publons.com/publon/$1				False																											P3431					
publons.researcher	Publons Researcher	https://publons.com/researcher	Database of researchers to track publications, citation metrics, peer reviews, and journal editing work.	^\d+$	1981638		https://publons.com/researcher/$1				False																											P3829					
pubmed	PubMed	https://www.ncbi.nlm.nih.gov/PubMed/	PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.	^\d+$	16333295	beck@ncbi.nlm.nih.gov	https://pubmed.ncbi.nlm.nih.gov/$1/			MEDLINE|PMID|PubMed|PubMed ID|pmid	False				PUBMED		PubMed	000302			1187		nbdc00179		pubmed	pubmed						pubmed				Pubmed		P698	Q2082879				
puro	Publishing Roles Ontology	http://www.sparontologies.net/ontologies/pro	An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians.		RoleInTime	silvio.peroni@unibo.it	http://purl.org/spar/pro/$1				False																																
pw	Pathway ontology	http://rgd.mcw.edu/rgdweb/ontology/search.html	The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.	^\d{7}$	0000423	gthayman@mcw.edu	http://purl.obolibrary.org/obo/PW_$1		https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo		False	PW			PW	PW									pw	pw	pw	pw	PW			pw						P7333	Q28864280				
pwo	Publishing Workflow Ontology	http://www.sparontologies.net/ontologies/pwo	An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity.		Workflow	silvio.peroni@unibo.it	http://purl.org/spar/pwo/$1				False													pwo																			
px	ProteomeXchange	http://www.proteomexchange.org/	The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.	^(R)?PXD\d{6}$	PXD000500		http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1				False				PX										px	px																	
pypi	PyPI	https://www.python.org/psf/	The Python Package Index (PyPI) is a repository for Python packages.	^[a-zA-Z_][a-zA-Z0-9\-_]+$	numpy		https://pypi.org/project/$1				False														pypi																		
qb	The data cube vocabulary	https://www.w3.org/TR/vocab-data-cube	This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI).	^\w+$	Observation	richard@cyganiak.de	http://purl.org/linked-data/cube#$1				False													qb																qb			
qtldb	Animal Genome QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent.	^\d+$	4685		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False														qtldb																		
qualo	Qualification Ontology	https://github.com/cthoyt/qualo	An ontology of qualifications, distinctions, and certifications that uses the Phenotype And Trait Ontology term quality (PATO:0000001) as a root term.	^\d{7}$	0000001	cthoyt@gmail.com	https://w3id.org/qualo/id/$1				False																																
qudt	Quantities, Units, Dimensions, and Types Ontology	https://qudt.org	Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.		baseDimensionEnumeration	noreply@bioontology.org	http://qudt.org/schema/qudt#$1				False	QUDT		18206		QUDT								qudt																qudt			
radiomics	Radiomics Ontology	http://www.radiomics.org/RO	The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]		LK99	alberto.traverso@maastro.nl	http://www.radiomics.org/RO/$1				False					RO																											
radlex	RSNA Informatics RadLex	https://radlex.org	"A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.

RadLex provides the foundation for vital data resources used in radiology:

- The LOINC/RSNA Radiology Playbook
- RadElement Common Data Elements
-RadReport Radiology Reporting Templates

The development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project."	^RID\d+$	RID1	radlex-feedback@lists.rsna.org	https://radlex.org/RID/$1				False	RADLEX		20689		RADLEX						2.16.840.1.113883.6.256																					
raid	Research Activity Identifier	https://ardc.edu.au/	RAiD is an identifier and global system, governed by ISO 23527:2022, to uniquely identifiy research projects, collaboratively, collect and publicly share information about them.	^102?\.\d+\/.+$	10.26259/0e59e9a5		https://raid.org/$1				False														raid																		
rapdb.locus	RAP-DB Locus	https://rapdb.dna.affrc.go.jp/	Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.	^Os\S+g\d{7}$	Os01g0883800		https://rapdb.dna.affrc.go.jp/locus/?name=$1			irgsp	False														rapdb.locus																		
rapdb.transcript	Rice annotation Project database	https://rapdb.dna.affrc.go.jp/	Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.	^Os\S+t\d{7}-\d{2}$	Os01t0883800-02		https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1				False														rapdb.transcript							rapdb											
ratmap	Rat Genome Database RatMap	http://ratmap.org	The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTL:s etc that is localized to chromosome. The database is dedicated to rat gene nomenclature and should be consulted for queries in such matters		5		http://ratmap.org/Showgene.php?gene_stable_id=$1				True																					ratmap										ensembl	
rbk	Rebuilding a Kidney	https://www.rebuildingakidney.org/	(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.	^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$	Q-2958	oxburl@mmc.org	https://www.rebuildingakidney.org/id/$1				False				RBK										rbk	rbk																	
rbo	Radiation Biology Ontology	https://github.com/Radiobiology-Informatics-Consortium/RBO	RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.	^\d{6,8}$	00000105	daniel.c.berrios@nasa.gov	http://purl.obolibrary.org/obo/RBO_$1				False	RBO				RBO											rbo	rbo	RBO										Q113014438				
rcb	RIKEN Bioresource Center Cell Bank	https://cell.brc.riken.jp/en/rcb	Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center.	^RCB\d+$	RCB0002	atsushi.yoshiki@riken.jp	https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1				False						RCB																	IMSR_RBRC									
rdbsb	Registry and database of bioparts for synthetic biology	https://www.biosino.org/rdbsb	This database provides identifiers for catalytic bioparts which are fundamental to the design, construction, and optimization of biological systems for specific metabolic pathways. It provides basic information, function information (including catalytic functions, qualitative and quantitative parameters, and biopart expression), and sequence information (nucleotide sequence and amino acid sequence)	^OENC\d+$	OENC205	gqzhang@sinh.ac.cn	https://www.biosino.org/rdbsb/bioparts_detail/$1				False																																
rdf	Resource Description Framework	http://www.w3.org/1999/02/22-rdf-syntax-ns	This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts		type	rmrich5@gmail.com	http://www.w3.org/1999/02/22-rdf-syntax-ns#$1				False				rdf									rdf																rdf			
rdfa	RDFa Vocabulary for Term and Prefix Assignment, and for Processor Graph Reporting	http://www.w3.org/ns/rdfa	RDFa Core is a specification for attributes to express structured data in any markup language. The embedded data already available in the markup language (e.g., HTML) can often be reused by the RDFa markup, so that publishers don't need to repeat significant data in the document content. (from https://www.w3.org/TR/rdfa-core/)		PrefixOrTermMapping	ivan@w3.org	http://www.w3.org/ns/rdfa#$1				False													rdfa																rdfa			
rdfs	RDF Schema	https://www.w3.org/TR/rdf-schema/	RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary.		label	danbri@w3.org	http://www.w3.org/2000/01/rdf-schema#$1	https://triplydb.com/w3c/rdfs/download.trig.gz			False	RDFS			rdfs	RDFS								rdfs				rdfs												rdfs			
rdo	RGD Disease Ontology	https://ratmine.mcw.edu/ontology/disease/	Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms.	^\d{7}$	9002859		http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#$1	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.owl	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.obo		False																																
re3data	re3data	https://datacite.org	Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines.	^r3d\d{9,9}$	r3d100010772		https://www.re3data.org/repository/$1				False			822											re3data																		
reactome	Reactome	https://www.reactome.org/	The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.	^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$	R-BTA-418592	deustp01@med.nyu.edu	https://reactome.org/content/detail/$1	https://w3id.org/biopragmatics/resources/reactome/reactome.owl.gz	https://w3id.org/biopragmatics/resources/reactome/reactome.obo	RE|REACT|Reactome|reactome.pathway	False				REACTOME			000411			1155		nbdc00185		reactome	reactome				103		reactome	r3d100010861			ReactomePathway		P3937					
reaxys	Reaxys	https://www.reaxys.com	Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier.	^\d+$	1257009					Beilstein|Reaxys	False										1003																	P1579					
rebase	REBASE Enzyme Number	http://rebase.neb.com/rebase/	REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.	^\d+$	101	roberts@neb.com	http://rebase.neb.com/rebase/enz/$1.html				False				REBASE						2325		nbdc00648		rebase	rebase				72		rebase	r3d100012171				DB-0089	P4866					
rebec	Brazilian Registry of Clinical Trials	https://ensaiosclinicos.gov.br	Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant.	^RBR-\w+$	RBR-6qvdftm		https://ensaiosclinicos.gov.br/rg/$1				False																																
rec	Recommendation Ontology	https://web.archive.org/web/20250105164652/https://smiy.sourceforge.net/rec/spec/recommendationontology.html	The Recommendation Ontology specification provides basic concepts and properties for describing recommendations on/for the Semantic Web.		Recommendation		http://purl.org/ontology/rec/core#$1	https://web.archive.org/web/20250116013621/https://smiy.sourceforge.net/rec/rdf/recommendationontology.owl			False													rec																			
receptome.family	Human Plasma Membrane Receptome Families	http://www.receptome.org	The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database.		5.1		http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1				False																					hpmr											
redfly	Regulatory Elements Database for Drosophila	http://redfly.ccr.buffalo.edu	REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs).		8		http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1				True																			265		redfly											
refseq	Reference Sequence Collection	https://www.ncbi.nlm.nih.gov/projects/RefSeq/	The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.	^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\d+)|(NZ_[A-Z]{2,4}\d+))(\.\d+)?$	NP_012345	pruitt@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/protein/$1			REFSEQ_PROT	False				RefSeq						1098	2.16.840.1.113883.6.280	nbdc00187		refseq	refseq						refseq	r3d100010285				DB-0117						ncbiprotein
reo	Reagent Ontology	https://github.com/tis-lab/reagent-ontology	The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.	^\d{7}$	0000079	matt@tislab.org	http://purl.obolibrary.org/obo/REO_$11	https://github.com/tis-lab/reagent-ontology/raw/master/reo/ontology_files/reo_pre-merged_or_reasoned_files/reo_reasoned_9-6-12.owl			False																		REO														
repeatsdb.protein	RepeatsDB Protein	https://repeatsdb.org/	RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database.	^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$	P29894		https://repeatsdb.org/protein/$1				False														repeatsdb.protein																	uniprot	
repeatsdb.structure	RepeatsDB Structure	https://repeatsdb.org/	RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.	^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$	2gc4E		https://repeatsdb.org/structure/$1				False														repeatsdb.structure																		
repec	Peruvian Clinical Trial Registry	https://ensayosclinicos-repec.ins.gob.pe/en/	The Peruvian Clinical Trials Registry - REPEC is a non-profit online information system developed in 2007 by INS. It is a publicly accessible prospective registry aimed at providing information about clinical trials underway in Peru. REPEC also includes Registries for Trial Sites, Institutional Research Ethics Committees, Sponsors and Contract Research Organizations. REPEC contains records of clinical trials since 1995. Since December 14, 2012, the Peruvian National Institute of Health, by means of the General Office for Research and Technological Transfer (OGITT), has started a process to improve REPEC and to join the WHO International Clinical Trials Registry Platform (ICTRP) and to be acknowledged as a Primary Registry. More information about primary registries is available in ICRTP at http://apps.who.int/trialsearch/. (from website)	^\d+-\d+(-[A-Z])?$	046-19		https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=$1				False																																
reproduceme	REPRODUCE-ME Ontology	https://w3id.org/reproduceme/research	The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.		MicrobeamManipulation	sheeba.samuel@uni-jena.de	https://w3id.org/reproduceme#$1				False	REPRODUCE-ME				REPRODUCE-ME												reproduceme							repr								
researchgate.profile	ResearchGate profile ID	https://www.researchgate.net	identifier for a person, used by ResearchGate profiles	^[0-9A-Za-z_-]+$	Rita-Heuser		https://www.researchgate.net/profile/$1				False																											P2038					
resid	Protein covalent bond	https://proteininformationresource.org/resid/	The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.	^AA\d{4}$	AA0001	john.garavelli@ebi.ac.uk	https://proteininformationresource.org/cgi-bin/resid?id=$1				True				RESID						2619				resid	resid	resid					resid							Q114677910				
reto	Regulation of Transcription Ontology	http://www.semantic-systems-biology.org/apo	Regulation of Transcription			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/ReTO/reto.owl	https://www.bio.ntnu.no/ontology/ReTO/reto.obo		False	RETO				RETO												reto															
rex	Physico-chemical process	https://www.ebi.ac.uk/chebi/	An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.	^\d{7}$	0000512	amalik@ebi.ac.uk	http://purl.obolibrary.org/obo/REX_$1	http://purl.obolibrary.org/obo/rex.owl			True	REX			REX	REX											rex	rex	REX			rex			rex								
rexo	Regulation of Gene Expression Ontology	http://www.semantic-systems-biology.org/apo	Regulation of Gene Expression			kuiper@bio.ntnu.no		https://www.bio.ntnu.no/ontology/ReXO/rexo.owl	https://www.bio.ntnu.no/ontology/ReXO/rexo.obo		False	REXO				REXO												rexo															
rfam	Rfam database of RNA families	https://rfam.org/	The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.	^RF\d{5}$	RF00230	apetrov@ebi.ac.uk	https://rfam.org/family/$1				False				RFAM						2356		nbdc00654		rfam	rfam																	
rfc	Internet Standard -- IETF Request for Comments	https://www.ietf.org/	Legacy site for IETF RFC proposals	^\d+$	5013		https://tools.ietf.org/rfc/rfc$1				False															rfc																	
rgd	Rat Genome Database	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.	^\d{4,}$	7499841	jrsmith@mcw.edu	http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1	https://w3id.org/biopragmatics/resources/rgd/rgd.owl.gz	https://w3id.org/biopragmatics/resources/rgd/rgd.obo	RGD	False	RGD			RGD	RGD	RGD				2620		nbdc00188		rgd	rgd				267		rgd	r3d100010417	RGD		Rgd	DB-0091	P3853					
rgd.qtl	Rat Genome Database qTL	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.	^\d+$	1354581		http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1				False				RGD.QTL										rgd.qtl	rgd.qtl																	
rgd.strain	Rat Genome Database strain	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.	^\d+$	5688061		http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1				False				RGD.STRAIN										rgd.strain	rgd.strain																	
rhea	Rhea reaction	https://www.rhea-db.org/	" Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.

Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."	^\d{5}$	12345	anne.morgat@sib.swiss	https://www.rhea-db.org/rhea/$1	https://w3id.org/biopragmatics/resources/rhea/rhea.owl.gz	https://w3id.org/biopragmatics/resources/rhea/rhea.obo	RHEA	False				RHEA						2644		nbdc02083		rhea	rhea				310		rhea	r3d100010891			Rhea			Q24265951				
ribocentre	Ribocentre	https://www.ribocentre.org/	Ribocentre is designed to contain comprehensive information of all natural ribozymes.	^[a-zA-Z0-9-]+$	hammer	huanglin36@mail.sysu.edu.cn	https://www.ribocentre.org/docs/$1			ribocenter	False																																
ribocirc	riboCIRC	http://www.ribocirc.com	Identifiers represent computationally predicted and experimentally verified translatable circular RNAs (circRNAs) across six model species (human, mouse, rat, worm, fly, and zebrafish), including ribosome-associated circRNAs and their encoded peptides with systematic annotation of sequence, structure, and function.	^(hsa|mmu|rno|cel|dme|dre)_ribocirc[A-Za-z0-9.:]+_\d{3}$	hsa_ribocircSCD_001	xiezhi@gmail.com	http://www.ribocirc.com/rna_detail.php?circ_id=$1				False																																
ricecyc	Rice Metabolic Pathways	http://www.gramene.org/pathway/ricecyc.html	RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project		PWY-1042		http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$1				False																			227		ricecyc											
ricegap	Rice Genome Annotation Project	https://rice.uga.edu	The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.	^LOC\_Os\d{1,2}g\d{5}$	LOC_Os02g13300	Robin.Buell@uga.edu	http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1			rgap	False				RICEGAP										ricegap	ricegap						rgap											
ricenetdb.compound	RiceNetDB Compound	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^OSC\d{4}$	OSC1416		http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1				False				RICENETDB.COMPOUND										ricenetdb.compound	ricenetdb.compound																	
ricenetdb.gene	RiceNetDB Gene	http://bis.zju.edu.cn/ricenetdb/	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^LOC\_Os\d{1,2}g\d{5}\.\d$	LOC_Os01g49190.1		http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1				False				RICENETDB.GENE										ricenetdb.gene	ricenetdb.gene																	
ricenetdb.mirna	RiceNetDB miRNA	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^osa-miR\d{3,5}[a-z]{0,1}$	osa-miR446		http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1				False				RICENETDB.MIRNA										ricenetdb.mirna	ricenetdb.mirna																	
ricenetdb.protein	RiceNetDB Protein	http://bis.zju.edu.cn/ricenetdb/	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^LOC\_Os\d{1,2}g\d{5}$	LOC_Os01g49190		http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1				False				RICENETDB.PROTEIN										ricenetdb.protein	ricenetdb.protein																	
ricenetdb.reaction	RiceNetDB Reaction	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^OSR\d{4}$	OSR0818		http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1				False				RICENETDB.REACTION										ricenetdb.reaction	ricenetdb.reaction																	
rism	RISM Online	https://rism.digital/	RISM Online is a new service that will publish the bibliographic and authority data from the catalogue of the Répertoire International des Sources Musicales project.	^[a-z]+/[0-9]+$	people/11035		https://rism.online/$1				False														rism																		
rna_sstrand	RNA SSTRAND	http://www.rnasoft.ca/sstrand	RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database.		CRW_00469		http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1				False																					rna_sstrand											
rnacentral	RNACentral	https://rnacentral.org/	RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.	^URS[0-9A-F]{10}(\_\d+)?$	URS0000759CF4	bsweeney@ebi.ac.uk	https://rnacentral.org/rna/$1			LNCRNADB	False				RNACENTRAL						3856		nbdc02671		rnacentral	rnacentral												P8697					
rnajunction	Database of RNA Junctions and Kissing loop Structures	http://rnajunction.abcc.ncifcrf.gov	RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. 		8668	ygyingli@ncsu.edu	https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1				False																					rnajunction											
rnaloops	RNAloops	https://rnaloops.cs.put.poznan.pl	Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank.	^\d+$	91792	Maciej.Antczak@cs.put.poznan.pl	https://rnaloops.cs.put.poznan.pl/search/details/$1				False																																
rnamod	The RNA Modification Database	http://rna.rega.kuleuven.be/rnamods/	A comprehensive listing of post-transcriptionally modified nucleosides from RNA -	^\d{3}$	051		http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1				False																																
rnamods	RNA Modification Database	http://rna.rega.kuleuven.be/rnamods/	The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.	^\d{3}$	101		http://rna.rega.kuleuven.be/rnamods/rnashow.pl?$1				False				RNAMODS										rnamods	rnamods						rnamods											
rnao	RNA ontology	https://github.com/bgsu-rna/rnao	Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.	^\d{7}$	0000128	BatchelorC@rsc.org	http://purl.obolibrary.org/obo/RNAO_$1				True	RNAO			RNAO	RNAO											rnao	rnao	RNAO			rnao											
rnavdb	RNA Virus Database	http://virus.zoo.ox.ac.uk/rnavirusdb/	The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species.		164750		http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$1				False																					rvd											
ro	Relation Ontology	https://oborel.github.io/	The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.	^(HOM)?\d{7}$	0002533	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/RO_$1			RO_proposed_relation|obo_rel|oborel	False	RO	RO		RO	OBOREL									ro	ro	ro	ro	RO			ro			ro			P3590	Q28729320				
roleo	Role Ontology	http://sourceforge.net/projects/roleo	The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles.	^\d{7}$	0000002	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/RoleO_$1				True	ROLEO				ROLEO																roleo											
ror	Research Organization Registry	https://ror.org	"ROR (Research Organization Registry) is a global, community-led registry
of open persistent identifiers for research organizations. ROR is jointly
operated by California Digital Library, Crossref, and Datacite."	^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$	03yrm5c26	maria.gould@ucop.edu	https://ror.org/$1	https://w3id.org/biopragmatics/resources/ror/ror.owl.gz	https://w3id.org/biopragmatics/resources/ror/ror.obo		False	ROR		20474		ROR									ror	ror		ror											Q110235640				
rosetta	The ROSETTA ontology of industrial robotics devices and robotic skills.	https://github.com/jacekmalec/Rosetta_ontology	The ROSETTA ontology of industrial robotics devices and robotic skills.		canBePerformedBy		http://kif.cs.lth.se/ontologies/rosetta.owl#$1				False																								rosetta								
rouge	Rodent Unidentified Gene-Encoded Large Proteins	http://www.kazusa.or.jp/rouge/	The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.	^m\w+$	mKIAA4200	ohara@kazusa.or.jp	https://www.kazusa.or.jp/rouge/gfpage/$1				False				ROUGE								nbdc00672		rouge	rouge						rouge					DB-0092						
rpcec	Cuban Registry of Clinical Trials	https://rpcec.sld.cu/en/home	The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)	^RPCEC\d+$	RPCEC00000423		https://rpcec.sld.cu/en/trials/$1				False																																
rrid	Research Resource Identification	https://rrid.site	"The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.
The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."	^[a-zA-Z]+.+$	AB_262044	bandrow@gmail.com	https://scicrunch.org/resolver/RRID:$1				False				RRID										rrid	rrid																	
rrrc	Rat Resource and Research Center	http://www.rrrc.us/	Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]	^\d+$	961		https://www.rrrc.us/Strain/?x=$1				False																							RRRC									
rs	Rat Strain Ontology	http://rgd.mcw.edu/rgdweb/search/strains.html	Ontology of rat strains	^\d{7}$	0001807	sjwang@mcw.edu	http://purl.obolibrary.org/obo/RS_$1	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.owl	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.obo		False	RS			RS	RS	RS										rs	rs	RS			rs							Q81661797				
rtecs	Registry of Toxic Effects of Chemical Substances	https://www.cdc.gov/niosh/rtecs/	RTECS is a compendium of data extracted from the open scientific literature. The data are recorded in the format developed by the RTECS staff and arranged in alphabetical order by prime chemical name. Six types of toxicity data are included in the file: (1) primary irritation; (2) mutagenic effects; (3) reproductive effects; (4) tumorigenic effects; (5) acute toxicity; and (6) other multiple dose toxicity. Specific numeric toxicity values such as LD50, LC50, TDLo, and TCLo are noted as well as species studied and route of administration used. For each citation, the bibliographic source is listed thereby enabling the user to access the actual studies cited. No attempt has been made to evaluate the studies cited in RTECS. The user has the responsibility of making such assessments.	^AB\d+$	AB1925000	vep1@cdc.gov					False							000566																									
rubygems	RubyGems	https://rubygems.org	A repository of software packages written in Ruby.		bel		https://rubygems.org/gems/$1				False																																
runbiosimulations	runBioSimulations	https://icahn.mssm.edu/	runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive.	^[0-9a-z]{24,24}$	5fde96bdc5f1aa9ff0cce18a		https://run.biosimulations.org/simulations/$1				False														runbiosimulations																		
rxno	Name Reaction Ontology	https://github.com/rsc-ontologies/rxno	RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization.	^\d{7}$	0000253	batchelorc@rsc.org	http://purl.obolibrary.org/obo/RXNO_$1		https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo		False	RXNO		20712	RXNO	RXNO											rxno	rxno	RXNO						rxno			P2106					
rxnorm	RxNorm	https://www.nlm.nih.gov/research/umls/rxnorm/	RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.	^[0-9]{1,7}$	221058	rxnorminfo@nlm.nih.gov	https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1			RXCUI	False	RXNORM			RXCUI	RXNORM						2.16.840.1.113883.6.88																P3345					
s_mart_db	The S/MAR transaction DataBase	http://smartdb.bioinf.med.uni-goettingen.de/	S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix.		SM0000020		http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1				False												nbdc00674							47		s_mart_db											
sabiork.compound	SABIO-RK Compound	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.	^\d+$	75		http://sabiork.h-its.org/newSearch?q=$1				False														sabiork.compound	sabiork.compound																	
sabiork.ec	SABIO-RK EC Record	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.	^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$	2.7.1.1	ulrike.wittig@h-its.org	http://sabiork.h-its.org/newSearch?q=ecnumber:$1				False				SABIORK.EC										sabiork.ec	sabiork.ec						sabiork.ec										ec	
sabiork.kineticrecord	SABIO Reaction Kinetics	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.	^\d+$	5046	ulrike.wittig@h-its.org	http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1				False				SABIORK.KINETICRECORD										sabiork.kineticrecord	sabiork.kineticrecord						sabiork.kinetic											
sabiork.reaction	SABIO-RK Reaction	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.	^\d+$	75	ulrike.wittig@h-its.org	http://sabiork.h-its.org/reacdetails.jsp?reactid=$1			SABIO-RK	False				SABIORK.REACTION						2309				sabiork.reaction	sabiork.reaction				226		sabiork.reaction	r3d100011052				DB-0177						
sael	Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List										True																																
sage.socialsciencethesaurus	SAGE Social Science Thesaurus	https://loterre.istex.fr/N9J/en/	"The SAGE Social Science Thesaurus is a multidisciplinary vocabulary of the most important concepts in the social sciences. SAGE uses this vocabulary as its principal keyword vocabulary for automated tagging of content on SAGE Knowledge and SAGE Research Methods. You are welcome to browse, download, use and transform the vocabulary for any non-commercial purpose.

The majority of concepts in the thesaurus have been mined from headwords in SAGE encyclopedias and other reference works. Relationships between concepts have been inferred from implicit structures in those works, for example subject indexes and readers' guides. As such, the thesaurus is a structured representation of what the editors of those reference works consider to be the most important concepts in the social sciences.

Additional scraping work has extracted and structured concept-specific metadata, such as dates (for events and people) and definitions. In addition to broader-narrower relationships, concepts are grouped by type: concepts, people, organizations, events, methods, theories or laws."		-LHR8P7WS-K		http://data.loterre.fr/ark:/67375/N9J$1				False																																
salk	Salk Institute for Biological Studies	https://www.salk.edu/	Scientific research institute for neuroscience, genetics, immunology, plant biology and more.	^\d{6}$	037727		https://abrc.osu.edu/stocks/number/SALK_$1				False																																
salmon	Salmon Ontology	https://github.com/DataONEorg/sem-prov-ontologies/tree/main/salmon	An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.	^\d+$	00000674	brycemecum@gmail.com	https://purl.dataone.org/odo/SALMON_$1				False	SALMON				SALMON																											
sao	Subcellular Anatomy Ontology	http://ccdb.ucsd.edu/CCDBWebSite/sao.html	SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.	^\d+$	5277619	slarson@ncmir.ucsd.edu	http://uri.neuinfo.org/nif/nifstd/sao$1				True	SAO			SAO	SAO											sao					sao							Q114677911				
saref	Smart Applications Reference ontology	https://saref.etsi.org/	The Smart Applications REFerence ontology (SAREF) is intended to enable interoperability between solutions from different providers and among various activity sectors in the Internet of Things (IoT), thus contributing to the development of the global digital market.		Actuation	maxime.lefrancois@emse.fr	https://saref.etsi.org/core/$1				False		SAREF											saref											saref								
saref.agri	SAREF extension for Agriculture	https://saref.etsi.org/saref4agri/	This ontology extends the SAREF ontology for the Agricultural domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Agricultural domain.		Animal		https://saref.etsi.org/saref4agri/$1			s4agri	False													s4agri											s4agri								
saref.auto	SAREF4AUTO: an extension of SAREF for the automotive domain	https://saref.etsi.org/saref4auto/	This ontology extends the SAREF ontology for the automotive domain. This work has been developed in the context of the STF 566, which was established with the goal to create four SAREF extensions, one of them for the automotive domain.		AcousticSensor		https://saref.etsi.org/saref4auto/$1			s4auto	False																								s4auto								
saref.building	SAREF extension for building devices	https://saref.etsi.org/saref4bldg/	This ontology extends the SAREF ontology for the building domain by defining building devices and how they are located in a building. This extension is based on the ISO 16739:2013 Industry Foundation Classes (IFC) standard for data sharing in the construction and facility management industries. The descriptions of the classes and properties extracted from IFC have been taken from the IFC documentation.		Actuator		https://saref.etsi.org/saref4bldg/$1			s4bldg	False													s4bldg											s4bldg								
saref.city	SAREF extension for Smart City	https://saref.etsi.org/saref4city/	This ontology extends the SAREF ontology for the Smart City domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Smart City domain.		AccessibilityConcept		https://saref.etsi.org/saref4city/$1			s4city	False													s4city											s4city								
saref.ehaw	SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain	https://saref.etsi.org/saref4ehaw/	The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both: - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e. - Use case 1 ?elderly at home monitoring and support?, - Use case 2 ?monitoring and support of healthy lifestyles for citizens?, - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification. SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology. ![SAREF4SYST overview](diagrams/SAREF4EHAW_Model.jpg) For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). For embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e. - Use case 1 “elderly at home monitoring and support”, - Use case 2 “monitoring and support of healthy lifestyles for citizens”, - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509		Activity	mohamed-el-amine.boukerfa@inrae.fr	https://saref.etsi.org/saref4ehaw/$1			s4ehaw	False	S4EHAW				S4EHAW								s4ehaw											s4ehaw								
saref.ener	SAREF4EE: the EEbus/Energy@home extension of SAREF	https://saref.etsi.org/saref4ener/	This is the extension of SAREF for the EEBus and Energy@Home project. The documentation of SAREF4EE is available at http://ontology.tno.nl/SAREF4EE_Documentation_v0.1.pdf. SAREF4EE represents 1) The configuration information exchanged in the use case 'Remote Network Management' according to the EEBus Technical Report, Protocol Specification- Remote Network Management, version 1.0.0.2, 2015-09-19; 2) The scheduling information about power sequences exchanged in the use cases Appliance scheduling through CEM and remote start' and 'Automatic cycle rescheduling', according to the message structures described in General Message Structures, version 0.1.1, 2015-10-07; 3) The monitor and control information exchanged in the use case 'Communicate appliance status and info on manually planned cycles', according to the monitoring and control part of the Energy@Home Data Model, version 1.0; and 4) the event-based data exchanged in the use case 'Demand Response', according to General Message Structures, version 0.1.1, 2015-10-07.		ActuatorLevel		https://saref.etsi.org/saref4ener/$1			s4ener	False													s4ener											s4ener								
saref.environment	SAREF extension for environment	https://saref.etsi.org/saref4envi/	This ontology extends the SAREF ontology for the environment domain, specifically for the light pollution domain, including concepts like photometers, light, etc.		AirEmissionKind		https://saref.etsi.org/saref4envi/$1			s4envi	False													s4envi											s4envi								
saref.grid	SAREF4GRID: an extension of SAREF for the Smart Grid domain	https://saref.etsi.org/saref4grid/	This ontology extends the SAREF ontology for the smart grid domain.		ActionOperation		https://saref.etsi.org/saref4grid/$1			s4grid	False																								s4grid								
saref.industry	SAREF4INMA: an extension of SAREF for the industry and manufacturing domain	https://saref.etsi.org/saref4inma/	SAREF4INMA is an extension of SAREF for the industry and manufacturing domain. SAREF4INMA focuses on extending SAREF for the industry and manufacturing domain to solve the lack of interoperability between various types of production equipment that produce items in a factory and, once outside the factory, between different organizations in the value chain to uniquely track back the produced items to the corresponding production equipment, batches, material and precise time in which they were manufactured. SAREF4INMA is specified and published by ETSI in the TS 103 410-5 associated to this ontology file. SAREF4INMA was created to be aligned with related initiatives in the smart industry and manufacturing domain in terms of modelling and standardization, such as the Reference Architecture Model for Industry 4.0 (RAMI), which combines several standards used by the various national initiatives in Europe that support digitalization in manufacturing. The full list of use cases, standards and requirements that guided the creation of SAREF4INMA are described in the associated ETSI TR 103 507.		Area		https://saref.etsi.org/saref4inma/$1			s4inma	False													s4inma											s4inma								
saref.lift	SAREF4LIFT: an extension of SAREF for the Smart Lifts domain	https://saref.etsi.org/saref4lift/	This ontology extends the SAREF ontology for the Smart Lifts domain.		AlarmSignal		https://saref.etsi.org/saref4lift/$1			s4lift	False																								s4lift								
saref.maritime	SAREF4MARI: an extension of SAREF for the maritime domain	https://saref.etsi.org/saref4mari/	SAREF4MARI is an extension of SAREF for the maritime domain.		AISDevice		https://saref.etsi.org/saref4mari/$1			s4mari	False																								s4mari								
saref.system	SAREF4SYST: an extension of SAREF for typology of systems and their inter-connections	https://saref.etsi.org/saref4syst/	"The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.

The SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).

SAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.

SAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.

Use cases for ontology patterns are described extensively in  [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).

For the Smart Energy domain:

- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. 
- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. 
- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).

For the Smart Building domain:

- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. 
- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. 

A graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:

- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.
- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.
- Dashed arrows with identifiers between stereotype signs (i.e. ""`<< >>`"") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.
- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.


![SAREF4SYST overview](diagrams/overview.png)"		Connection		https://saref.etsi.org/saref4syst/$1			s4syst	False													s4syst											s4syst								
saref.water	SAREF extension for water	https://saref.etsi.org/saref4watr/	This ontology extends the SAREF ontology for the water domain. This work has been developed in the context of the STF 566, which was established with the goal to create three SAREF extensions, one of them for the water domain.		AcceptabilityProperty		https://saref.etsi.org/saref4watr/$1			s4watr	False													s4watr											s4watr								
saref.wearable	SAREF4WEAR: an extension of SAREF for Wearables	https://saref.etsi.org/saref4wear/	SAREF4WEAR is an extension of SAREF for Wearables		BiometricProperty		https://saref.etsi.org/saref4wear/$1			s4wear	False													s4wear											s4wear								
sargon	SARGON (SmArt eneRGy dOmain oNtology)	https://sargon-n5geh.netlify.app/	SARGON (SmArt eneRGy dOmain oNtology) is an open-source effort to define semantic descriptions of the smart assets in building automation and smart grid and the relationships between them. SARGON consists of an extensible dictionary of terms and concepts in and around building and smart grid, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of SARGON with existing tools and databases. Through the use of powerful Semantic Web technology, SARGON can describe the broad set of Devices and custom features, assets and subsystems found across the building stock in a consistent matter.		AC-DC		https://sargon-n5geh.netlify.app/ontology/1.0/object_properties/$1				False																								sargon								
sasap	The State of Alaska's Salmon and People Ontology	https://github.com/DataONEorg/sem-prov-ontologies/tree/main/salmon	An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.	^\d+$	00000101	brycemecum@gmail.com	https://purl.dataone.org/odo/SASAP_$1				False	SASAP				SASAP																											
sasbdb	Small Angle Scattering Biological Data Bank	http://www.sasbdb.org/	Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.	^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$	SASDAX8	a.kikhney@embl-hamburg.de	http://www.sasbdb.org/data/$1				False				SASBDB										sasbdb	sasbdb							r3d100012273				DB-0258						
sbo	Systems Biology Ontology	http://www.ebi.ac.uk/sbo/	The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.	^\d{7}$	0000485	sheriff@ebi.ac.uk	http://purl.obolibrary.org/obo/SBO_$1		http://purl.obolibrary.org/obo/sbo.obo		False	SBO		20713	SBO	SBO									sbo	sbo	sbo	sbo	SBO			sbo			sbo				Q2377160				
scancerrna	SCancerRNA	http://www.scancerrna.com/	SCancerRNA provides identifiers for non-coding RNA biomarkers, including long ncRNA, microRNA, PIWI-interacting RNA, small nucleolar RNA, and circular RNA, with data on their differential expression at the cellular level in cancer.	^\d+$	9530	zty2009@hit.edu.cn	http://www.scancerrna.com/toDetail?id=$1				False																																
scdo	Sickle Cell Disease Ontology	https://scdontology.h3abionet.org/	An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.	^\d{7}$	0000728	giant.plankton@gmail.com	http://purl.obolibrary.org/obo/SCDO_$1				False	SCDO				SCDO											scdo	scdo	SCDO										Q108710019				
schem	Selventa Chemicals	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-chemical-names.txt	Selventa legacy chemical namespace used with the Biological Expression Language	^A\d{4}$	A0001		https://biopragmatics.github.io/providers/schem/$1				False																																
schema	Schema.org	https://schema.org	Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond.		Person	johardi@stanford.edu	https://schema.org/$1			schemaorg|sdo	False	SCHEMAORG		18250		SCHEMA								sdo				schemaorg_http							schema					schema			
scholia.resource	Scholia Registry	https://scholia.toolforge.org/	A frontend to Wikidata		doi		https://bioregistry.io/metaregistry/scholia/$1				False																																
sciflection	Sciflection	https://sciformation.com/sciflection.html	Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions	^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$	5ede4273-b26c-4ea4-adb7-3ce294ab3397		https://sciflection.com/$1				False														sciflection								r3d100013413										
sciprofiles	SciProfiles ID	https://sciprofiles.com/	numerical identifier for an author in SciProfiles by MDPI	^[1-9]\d*$	118021		https://sciprofiles.com/profile/$1				False																											P8159					
scomp	Selventa Complexes	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-named-complexes.txt	Selventa legacy complex namespace used with the Biological Expression Language	^C\d{4}$	C0001		https://biopragmatics.github.io/providers/scomp/$1				False																																
scop	Structural Classification of Proteins - Unique Identifier	https://scop.berkeley.edu	SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.).	^\d+$	47419	JMChandonia@lbl.gov	http://scop.berkeley.edu/sunid=$1			scop.sun|scop.sunid	False				SCOP						1042				scop	scop						scop											
scop.sccs	SCOP(e) concise classification string	https://scop.berkeley.edu	This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family.		a.39.1.1	JMChandonia@lbl.gov	http://scop.berkeley.edu/sccs=$1				False										1041																						
scop.sid	Structural Classification of Protein - Stable Domain Identifier	https://scop.berkeley.edu	"A 7-character sid consists of ""d"" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1."		d4akea1	JMChandonia@lbl.gov	http://scop.berkeley.edu/sid=$1				False										1039																						
scopus	Scopus Researcher	https://www.scopus.com	"Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. 
Delivering a comprehensive overview of the world's research output in  the fields of science, technology, medicine, social sciences, and arts 
and humanities, Scopus features smart tools to track, analyze and  visualize research."	^\d+$	56305849200		https://www.scopus.com/authid/detail.uri?authorId=$1			scopus.author	False																											P1153					
scopus.affiliation	Scopus affiliation ID	http://info.sciencedirect.com/scopus/scopus-in-detail/tools/affiliationidentifier	identifier for an organisation in author affiliations per Scopus		60025709		https://www.scopus.com/affil/profile.uri?afid=$1				False																											P1155					
scopus.publication	Scopus Publication	https://www.scopus.com/	identifier for a source/publication venue (journal, conference, etc) in Scopus	^[1-9]\d{0,11}$	16129		https://www.scopus.com/sourceid/$1				False																											P1156					
scopus.work	Scopus Work	https://www.scopus.com/	unique academic work identifier assigned in Scopus bibliographic database	^2-s2\.0-\d+$	2-s2.0-0030770923		http://www.scopus.com/record/display.url?origin=inward&eid=$1			scopus.eid	False																											P1154					
scor	Supply Chain Operation Reference	https://github.com/vocol/scor	The Supply Chain Operation Reference (SCOR) is a cross-industry approach to lay the groundwork for more efficient and effective information exchange in supply networks.		ActiviateOrArchiveContract		http://purl.org/eis/vocab/scor#$1				False																								scor								
scoro	Scholarly Contributions and Roles Ontology	http://www.sparontologies.net/ontologies/scoro	An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator).		IntellectualContribution	silvio.peroni@unibo.it	http://purl.org/spar/scoro/$1				False													scoro																			
scpd	Saccharomyces cerevisiae promoter database	http://rulai.cshl.edu/SCPD/	Database containing promotor sequences found in Saccharomyces cerevisiae.		CDC2		http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$1				True																			130		scpd											
scr	SciCrunch Registry	https://scicrunch.org/browse/resourcedashboard	The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources.	^\d+$	022586	abandrowski@ncmir.ucsd.edu	http://scicrunch.org/resolver/SCR_$1			scicrunch	False												nbdc01937											SCR									
scretf	ScerTF	http://stormo.wustl.edu/ScerTF/	ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.	^\w+$	RSC3		http://stormo.wustl.edu/ScerTF/details/$1				True				SCRETF										scretf	scretf																	
sd	SPARQL 1.1 Service Description	http://www.w3.org/TR/sparql11-service-description/	Un vocabulaire pour décrire des services SPARQL publiés via le protocole SPARQL 1.1 pour RDF. Ces descriptions fournissent un mécanisme par lequel un client ou un utilisateur final peuvent obtenir des informations sur le service SPARQL, telles que les extensions de fonctions supportées ou les détails à propos des jeux de données disponibles.		endpoint						False													sd																sd			
sdap	Structural Database of Allergenic Proteins	http://fermi.utmb.edu/SDAP	SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes.		610		http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1				False																					sdap											
sdbs	Spectral Database for Organic Compounds	https://sdbs.db.aist.go.jp	The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.	^\d+$	4544		https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno=$1				False				SDBS								nbdc01520		sdbs	sdbs																	
sddo	Science Data Discovery Ontology	https://github.com/NASA-IMPACT/sddo	The Science Data Discovery Ontology (sddo) is being developed to provide a semantic foundation for the discovery of information managed by NASA's Science Mission Directorate. This information spans many scientific disciplines, fields and subfields, including heliophysics, earth science, planetary science, astrophysics, biology, astrobiology, and physical science. [from repository]	^\d{7}$	3000001	daniel.c.berrios@nasa.gov	http://purl.obolibrary.org/obo/SDDO_$1	https://github.com/NASA-IMPACT/sddo/raw/refs/heads/master/sddo.owl	https://github.com/NASA-IMPACT/sddo/raw/refs/heads/master/sddo.obo		False																																
sdgio	Sustainable Development Goals Interface Ontology	https://github.com/SDG-InterfaceOntology/sdgio	An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.	^\d{8}$	00020134	pier.buttigieg@awi.de	http://purl.unep.org/sdg/SDGIO_$1	https://github.com/SDG-InterfaceOntology/sdgio/raw/master/sdgio.owl			False		SDGIO															sdgio	SDGIO														
sdis	Selventa Diseases	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-diseases.txt	Selventa legacy disease namespace used with the Biological Expression Language	^D\d{4}$	D0001		https://biopragmatics.github.io/providers/sdis/$1				False																																
sdmx	SDMX-RDF vocabulary	https://raw.githubusercontent.com/UKGovLD/publishing-statistical-data/master/specs/src/main/vocab/sdmx.ttl	This vocabulary extends the data cube vocabulary to support publication of statistical data in RDF, using an information model based on SDMX		EntityRole						False													sdmx																sdmx			
sdy	Immunology Database and Analysis Portal (ImmPort)	https://docs.immport.org/home/team/	ImmPort is a scientific data resource funded by the National Institutes of Health (NIH) to preserve and share immunology research and clinical trials data generated by NIH researchers and external organizations. ImmPort uses FAIR principles to maximize reuse of deposited data for advancement of biomedical sciences.	^[sS][dD][yY]\d+$	sdy998		https://immport.org/shared/study/$1				False														sdy																		
sedml.format	SED-ML data format	http://sed-ml.org/	Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).	^[a-z]+(\..*?)?$	csv		https://sed-ml.org/urns.html#format:$1				False														sedml.format																		
sedml.language	SED-ML model format	http://sed-ml.org/	Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).	^[a-z]+(\..*?)?$	sbml.level-3.version-2		https://sed-ml.org/urns.html#language:$1				False														sedml.language																		
seed.compound	SEED Compound	http://modelseed.org/	This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.	^cpd\d+$	cpd15380		http://modelseed.org/biochem/compounds/$1				False				SEED.COMPOUND										seed.compound	seed.compound																	
seed.reaction	SEED Reactions	http://modelseed.org/biochem/reactions/	ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.	^rxn\d+$	rxn00001		http://modelseed.org/biochem/reactions/$1				False														seed.reaction	seed.reaction																	
seed.role	The SEED	https://theseed.org/	"With the growing number of available genomes, the need for an environment to support effective comparative analysis increases. The original SEED Project was started in 2003 by the [Fellowship for Interpretation of Genomes (FIG)](http://thefig.info/) as a largely unfunded open source effort. Argonne National Laboratory and the University of Chicago joined the project, and now much of the activity occurs at those two institutions (as well as the University of Illinois at Urbana-Champaign, Hope college, San Diego State University, the Burnham Institute and a number of other institutions). The cooperative effort focuses on the development of the comparative genomics environment called the SEED and, more importantly, on the development of curated genomic data.
This prefix provides identifiers for molecular roles that describe the function of one or more proteins in microbes and plants."		Histidinol dehydrogenase (EC 1.1.1.23)		https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr=$1				False																																
seed.subsystem	SEED Subsystem	http://seed-viewer.theseed.org/seedviewer.cgi	This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.	^\w+$	Biotin_biosynthesis		https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem=$1			seed	True				SEED										seed	seed																	
seinet	Southwestern Environmental Information Network	https://swbiodiversity.org/seinet/index.php	A vocabulary about species to support the environmental research community in Arizona and New Mexico	^\d+$	762		https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1				False																											P6209					
semapv	Semantic Mapping Vocabulary	https://mapping-commons.github.io/semantic-mapping-vocabulary/	The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata.		LexicalMatching	nicolas.matentzoglu@gmail.com	https://w3id.org/semapv/vocab/$1	https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl		semapv_voc|sempav_voc	False			20428														semapv															
semion	Semion author ID (archived)	https://www.semion.io	identifier of an author or reviewer, in Semion	^\d+$	22132778		https://web.archive.org/web/1/https://www.semion.io/Author/$1				False																											P7671					
senso	Sensitive Data Ontology	https://github.com/DataONEorg/sem-prov-ontologies/tree/main/senso	The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.	^\d+$	00000003	brycemecum@gmail.com	http://purl.dataone.org/odo/SENSO_$1				False	SENSO				SENSO																											
seo	Scientific Event Ontology	https://w3id.org/seo	The Scientific Event Ontology (SEO) is a reference ontology for modeling data about scientific events such as conferences, symposioums, and workshops.		Symposium		https://w3id.org/seo#$1				False													seo																			
sep	Sample processing and separation techniques	https://psidev.info/sepcv	A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.	^\d{5,6}$	00073	psidev-gps-dev@lists.sourceforge.net	http://purl.obolibrary.org/obo/SEP_$1		https://raw.githubusercontent.com/HUPO-PSI/gelml/master/CV/sep.obo		True	SEP			SEP	SEP											sep		SEP			sep							Q114677913				
sepio	Scientific Evidence and Provenance Information Ontology	https://github.com/monarch-initiative/SEPIO-ontology	An ontology for representing the provenance of scientific claims and the evidence that supports them.	^\d{7}$	0000048	mhb120@gmail.com	http://purl.obolibrary.org/obo/SEPIO_$1				False	SEPIO			SEPIO	SEPIO											sepio	sepio	SEPIO						sepio				Q55118599				
sfam	Selventa Families	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-protein-families.txt	Selventa legacy protein family namespace used with the Biological Expression Language	^F\d{4}$	F0001		https://biopragmatics.github.io/providers/sfam/$1				False																																
sgd	Saccharomyces Genome Database	https://www.yeastgenome.org/	The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.	^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$	S000002493	cherry@genome.stanford.edu	https://www.yeastgenome.org/locus/$1	https://w3id.org/biopragmatics/resources/sgd/sgd.owl	https://w3id.org/biopragmatics/resources/sgd/sgd.obo		False				SGD						2632		nbdc00202		sgd	sgd						sgd	r3d100010419			Sgd	DB-0095	P3406					
sgd.pathways	Saccharomyces genome database pathways	http://pathway.yeastgenome.org/	Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).	^PWY\w{2}\-\d{3}$	PWY3O-214	Karen.Christie@jax.org	http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1				False				SGD.PATHWAYS										sgd.pathways	sgd.pathways						sgd.pathways											
sgn	Sol Genomics Network	http://solgenomics.net/	The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.	^\d+$	0001	lam87@cornell.edu	http://solgenomics.net/phenome/locus_display.pl?locus_id=$1				False				SGN								nbdc02414		sgn	sgn				433		sgn	r3d100012078										
sh	Shapes Constraint Language	https://www.w3.org/TR/shacl/	A language for validating RDF graphs against a set of conditions		NodeShape	dr.shorthair@pm.me	http://www.w3.org/ns/shacl#$1	https://triplydb.com/w3c/sh/download.trig.gz		shacl	False													sh											sh					sh			
shareloc	ShareLoc	https://shareloc.xyz	ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc.	^\d{6}$	000004		https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_$1				False																	shareloc															
sharkipedia.species	Sharkipedia Species	https://www.sharkipedia.org/	Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.	^\d+$	983	creeas@gmail.com	https://www.sharkipedia.org/species/$1				False																												Q113989515				
sharkipedia.trait	Sharkipedia Trait	https://www.sharkipedia.org/	Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.	^\d+$	13	creeas@gmail.com	https://www.sharkipedia.org/traits/$1				False																												Q113989515				
sharkipedia.trend	Sharkipedia Trend	https://www.sharkipedia.org/	Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.	^\d+$	3447	creeas@gmail.com	https://www.sharkipedia.org/trends/$1				False																												Q113989515				
sheepqtldb	Animal Genome Sheep QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.	^\d+$	19803		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False				SHEEPQTLDB										sheepqtldb	sheepqtldb						sheepqtldb									qtldb		
shex	Shape Expression Vocabulary	http://www.w3.org/ns/shex#	The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.	^\w+$	TripleExpression	gregg@greggkellogg.net	http://www.w3.org/ns/shex#$1				False																													shex			
shibase	ShiBASE	http://www.mgc.ac.cn/ShiBASE/	The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format.		SDY2614		http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1				True																					shibase											
shnex	SHACL Node Expression	https://www.w3.org/TR/shacl12-node-expr/	A vocabulary used in tandem with SHACL for representing node shapes		instancesOf		http://www.w3.org/ns/shacl-node-expr#$1				False																																
shsh	SHACL in SHACL	http://www.w3.org/ns/shacl-shacl	This shapes graph can be used to validate SHACL shapes graphs against a subset of the syntax rules.		ListShape						False																													shsh			
sibo	Social Insect Behavior Ontology	https://github.com/obophenotype/sibo	Social Behavior in insects	^\d{7}$	0000509	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/SIBO_$1				True	SIBO			SIBO	SIBO				SIBO							sibo	sibo	SIBO										Q114677952				
sider.drug	SIDER Drug	http://sideeffects.embl.de/	SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.	^\d+$	2244		http://sideeffects.embl.de/drugs/$1				False				SIDER.DRUG										sider.drug	sider.drug																	
sider.effect	SIDER Side Effect	http://sideeffects.embl.de/	SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.	^C\d+$	C0017565		http://sideeffects.embl.de/se/$1				False				SIDER.EFFECT										sider.effect	sider.effect																umls	
sigmaaldrich	Sigma Aldrich	https://www.sigmaaldrich.com	Sigma Aldrich is a life sciences supply vendor.		HPA000698		https://www.sigmaaldrich.com/US/en/product/sigma/$1				False						Sigma-Aldrich													236													
signaling-gateway	Signaling Gateway	http://www.signaling-gateway.org/molecule	The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.	^A\d{6}$	A001094	kenan@ucsd.edu	http://www.signaling-gateway.org/molecule/query?afcsid=$1				True				SIGNALING-GATEWAY										signaling-gateway	signaling-gateway				87		signaling-gateway											
signor	Signaling Network Open Resource	https://signor.uniroma2.it/	SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.	^SIGNOR\-[A-Z]+\d+$	SIGNOR-C41	gianni.cesareni@torvergata.it	https://signor.uniroma2.it/relation_result.php?id=$1	https://w3id.org/biopragmatics/resources/signor/signor.owl	https://w3id.org/biopragmatics/resources/signor/signor.obo	SIGNOR	False														signor					599							DB-0206						
signor.relation	SIGNOR Relation	https://signor.uniroma2.it	Identifiers for relationships between proteins and complexes, along with their type and provenance	^SIGNOR-\d+$	SIGNOR-252737						False																																
silva.taxon	SILVA Taxon	https://www.arb-silva.de	"SILVA is a resource of aligned ribosomal RNA (rRNA) gene sequences for Bacteria, Archaea, and Eukaryotes.

It assigns internal, auto-incremented integer identifiers to taxa. However, these identifiers are not persistent nor unique - if the label for a taxon is changed, it assigned a new identifier and the old identifier is removed."	^\d+$	11084	lorenz.reimer@dsmz.de					False																																
sio	Semanticscience Integrated Ontology	https://github.com/micheldumontier/semanticscience	The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.	^\d{6}$	000912	michel.dumontier@gmail.com	https://semanticscience.org/resource/SIO_$1				False	SIO	SIO		SIO	SIO								sio	sio			sio	SIO						sio								
sioc.access	Semantically-Interlinked Online Communities Access Ontology	http://rdfs.org/sioc/spec/	Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining basic information on permissions and access rights.		Permission		http://rdfs.org/sioc/access#$1				False																																
sioc.actions	Semantically-Interlinked Online Communities Actions Ontology	http://rdfs.org/sioc/spec/	An ontology of predicates for actions in SIOC		DigitalArtifact		http://rdfs.org/sioc/actions#$1				False																																
sioc.argument	Semantically-Interlinked Online Communities Argumentation Ontology	http://rdfs.org/sioc/spec/	A vocabulary of argumentation predicates for SIOC		decides		http://rdfs.org/sioc/argument#$1				False																																
sioc.core	Semantically-Interlinked Online Communities Core Ontology	http://rdfs.org/sioc/spec/	Semantically-Interlinked Online Communities, or SIOC, is an attempt to link online community sites, to use Semantic Web technologies to describe the information that communities have about their structure and contents, and to find related information and new connections between content items and other community objects. SIOC is based around the use of machine-readable information provided by these sites.		Item		http://rdfs.org/sioc/ns#$1			sioc	False													sioc																sioc			
sioc.quote	Semantically-Interlinked Online Communities Services Ontology - Quote Ontology	http://rdfs.org/sioc/spec/	Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining basic information on community-related web services.		has_service		http://rdfs.org/sioc/services#$1				False																																
sioc.swan	Semantically-Interlinked Online Communities Services Ontology - SWAN Mapping	http://rdfs.org/sioc/spec/	Mappings from SIOC to SWAN, with a small number of aux terms		OnlineJournal		http://rdfs.org/sioc/swan#$1				False																																
sioc.types	Semantically-Interlinked Online Communities Types Ontology	http://rdfs.org/sioc/spec/	Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining subclasses and subproperties of SIOC terms.		AddressBook		http://rdfs.org/sioc/types#$1				False																																
siren	Scientific Information Retrieval and Exchange Network	https://www.langual.org/langual_indexed_datasets.asp	A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods	^F\d+$	F11903	patrice.buche@inrae.fr				SUBSET_SIREN	False		SIREN																														
sisu	Sequencing Initiative Suomi	http://www.sisuproject.fi/	The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.	^[0-9]+:[0-9]+$	17:41223048	hannele.laivuori@helsinki.fi	http://search.sisuproject.fi/#/variant/$1				False				SISU										sisu	sisu																	
sitex	SitEx	http://www-bionet.sscc.ru/sitex/	SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.	^\d+$	1000	imedvedeva@celgene.com	http://www-bionet.sscc.ru/sitex/index.php?siteid=$1				True				SITEX										sitex	sitex						sitex											
skip	Stemcell Knowledge and Information Portal	https://skip.stemcellinformatics.org/en/	SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.	^SKIP\d+$	SKIP001214		https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1				False						SKIP																										
skm	Stress Knowledge Map	http://www.nib.si/eng/	Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. 	^rx[0-9]{5}$	rx00408		https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary				False														skm																		
skos	Simple Knowledge Organization System	https://www.w3.org/2004/02/skos/	SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web		prefLabel	alistair.miles@linacre.ox.ac.uk	http://www.w3.org/2004/02/skos/core#$1				False	skos		18274	skos									skos				skos							skos					skos			
skos.thes	SKOS Thesaurus Extension	https://www.dublincore.org/specifications/skos-thes/ns/	SKOS-Thes: An extension to SKOS based on the ISO 25964 data model. The ISO 25964 standard, published in 2011, covers all aspects of developing thesauri and setting up mappings across vocabularies to encourage high quality information retrieval across networked resources. [from https://www.dublincore.org/specifications/skos-thes/]		CompoundEquivalence		https://www.dublincore.org/specifications/skos-thes/ns/#$1			skos-thes|skosthes	False																																
skosxl	Simple Knowledge Organization System eXtension for Labels	http://www.w3.org/2008/05/skos-xl#	The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary.		literalForm		http://www.w3.org/2008/05/skos-xl#$1			skos-xl|skos.xl	False													skosxl											skosxl					skosxl			
slctr	Sri Lanka Clinical Trials Registry	https://slctr.lk/	The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)	^SLCTR/\d{4}/\d+$	SLCTR/2023/010						False																																
slkbase	SUM Breast Cancer Cell Line Knowledge Base	https://sumlineknowledgebase.com/	Cell line databases/resources	^\d+$	3618		https://sumlineknowledgebase.com/?page_id=$1				False						SLKBase																										
slm	SwissLipid	http://www.swisslipids.org/#/	SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.	^\d+$	000000341	swisslipids@isb-sib.ch	https://www.swisslipids.org/#/entity/SLM:$1	https://w3id.org/biopragmatics/resources/slm/slm.owl.gz	https://w3id.org/biopragmatics/resources/slm/slm.obo.gz	swisslipid|swisslipids	False				SWISSLIPID								nbdc02026		slm	swisslipid		slm		687			r3d100012603			Swisslipids	DB-0197	P8691					
slso	Space Life Sciences Ontology	https://github.com/nasa/LSDAO	The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.		0000000	daniel.c.berrios@nasa.gov	http://purl.obolibrary.org/obo/SLSO_$1				False	SLSO				SLSO											slso	slso	SLSO														
smart	Simple Modular Architecture Research Tool	http://smart.embl-heidelberg.de/	The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.	^SM\d{5}$	SM00015	chris.ponting@ed.ac.uk	http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1				False				SMART								nbdc00682		smart	smart						smart				Smart	DB-0097						
smc.bgc	Secondary Metabolism Collaboratory - biosynthetic gene cluster	https://smc.jgi.doe.gov	The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for individual biosynthetic gene clusters (BGCs) linked to their corresponding bacterial or archaeal source.	^\d+$	12039302	dwudwary@lbl.gov	https://smc.jgi.doe.gov/bgc/$1				False																																
smc.source	Secondary Metabolism Collaboratory - taxon	https://smc.jgi.doe.gov	The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for bacteria and archaea sources linked to their associated set of biosynthetic gene clusters (BGCs).	^\d+$	1	dwudwary@lbl.gov	https://smc.jgi.doe.gov/sources/$1				False																																
smid	C. elegans Small Molecule Identifier Database	https://smid-db.org/	SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications.	^\d+$	137		https://smid-db.org/smid/$1			SMID-DB	False																																
smiles	Simplified molecular-input line-entry system	https://www.daylight.com/dayhtml/doc/theory/theory.smiles.html	Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.	^[A-Za-z0-9+\-\*=#$:().>/\\\[\]%]+$	CC2(C)C\1CCC(C)/C=C/12	tim.vandermeersch@gmail.com	https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip				False																											P233	Q466769				
smpdb	Small Molecule Pathway Database	https://smpdb.ca/	The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.	^SMP\d+$	SMP0000219	david.wishart@ualberta.ca	https://smpdb.ca/view/$1			SMP	False				SMPDB						2659		nbdc00908		smpdb	smpdb				311		smpdb											
snap	Snapshot	http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf	Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality.		Quality		http://www.ifomis.org/bfo/1.1/snap#$1			bfo11snap	False																			494		snap											
snctp	Swiss National Clinical Trials Portal	https://kofam.ch/en/snctp-portal	The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]		SNCTP000005580						False																																
snodb	snoDB	https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB	Contains identifiers for human small nucleolar RNAs (snoRNAs) from snoDB, an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources.	^snoDB\d{4}$	snoDB0001	michelle.scott@usherbrooke.ca	https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/detailed_view/$1				False												nbdc02602																				
snomedct	SNOMED CT (International Edition)	https://browser.ihtsdotools.org/	SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.	^(\w+)?\d+$	284196006	custserv@nlm.nih.gov	http://purl.bioontology.org/ontology/SNOMEDCT/$1			SCTID|SCTID_2010_1_31|SNOMECT|SNOMED|SNOMEDCT|SNOMEDCTCT|SNOMEDCTCT_2018_03_01|SNOMEDCTCT_2019_03_01|SNOMEDCT_2005_07_31|SNOMEDCT_2010_1_31|SNOMEDCT_2020_03_01|SNOMEDCT_US|SNOMEDCT_US_2015_03_01|SNOMEDCT_US_2016_03_01|SNOMEDCT_US_2018_03_01|SNOMEDCT_US_2018_09_01|SNOMEDCT_US_2019_03_01|SNOMEDCT_US_2019_09_01|SNOMEDCT_US_2020_03_01|SNOMEDCT_US_2020_09_01|SNOMEDCT_US_2021_03_01|SNOMEDCT_US_2021_07_31|SNOMEDCT_US_2021_09_01|SNOMEDCT_US_2022_07_31|SNOMEDCT_US_2022_09_01|SNOMEDCT_US_2022_12_31|SNOMEDCT_US_2023_02_28|SNOMEDCT_US_2023_03_01|SNOMEDCT_US_2023_09_01|SNOMEDCT_US_2023_10_01|SNOMEDCT_US_2023_11_01|SNOMEDCT_US_2024_03_01|SNOMED_CT|SNOMED_CT_US_2018_03_01|SNOWMEDCT|SNOWMEDCT_US|SNOWMEDCT_US_2018_03_01	False	SNOMEDCT		20686	SNOMEDCT	SNOMEDCT						2.16.840.1.113883.6.96			snomedct	snomedct		snomed				snomedct						P5806					
snornabase	snoRNABase	https://www-snorna.biotoul.fr/	"A comprehensive database of

human H/ACA and C/D box snoRNAs."		SR0000178		http://www-snorna.biotoul.fr/plus.php?id=$1				False												nbdc00323									snornalbmedb											
snp2tfbs	SNP to Transcription Factor Binding Sites	https://ccg.epfl.ch/snp2tfbs/	SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.	^rs[0-9]+$	rs11603840		https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1				False														snp2tfbs																	dbsnp	
snp500cancer	SNP500Cancer	http://snp500cancer.nci.nih.gov	The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer.		TP53-47		http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1				True																					snp500cancer											
so	Sequence types and features ontology	http://www.sequenceontology.org/	The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.	^\d{7}$	0001157	keilbeck@genetics.utah.edu	http://purl.obolibrary.org/obo/SO_$1		https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo		False	SO	SO		SO	SO									so	so	so	so	SO			so							Q81661803				
sopharm	Suggested Ontology for Pharmacogenomics	http://www.loria.fr/~coulet/sopharm2.0_description.php	SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.			adrien.coulet@loria.fr	http://purl.obolibrary.org/obo/SOPHARM_$1				True	SOPHARM			SOPHARM	SOPHARM											sopharm																
sosa	Sensor, Observation, Sample, and Actuator Ontology	https://www.w3.org/TR/vocab-ssn/	This ontology is based on the SSN Ontology by the W3C Semantic Sensor Networks Incubator Group (SSN-XG), together with considerations from the W3C/OGC Spatial Data on the Web Working Group.		FeatureOfInterest	dr.shorthair@pm.me	http://www.w3.org/ns/sosa/$1				False		SOSA											sosa											sosa					sosa			
soybase	SoyBase	http://soybase.org/	SoyBase is a repository for curated genetics, genomics and related data resources for soybean.	^\w+(\-)?\w+(\-)?\w+$	BARC-013845-01256	Jacqueline.Campbell@usda.gov	https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1				False				SOYBASE								nbdc01817		soybase	soybase				44		soy	r3d100010846										
span	Span	http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf	Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality.							bfo11span	False																																
sparcdrs	SPARC DRS	https://www.fdilab.org	The SPARC Data Repository Service (DRS) is an implementation of the Global Alliance for Genomics and Health (GA4GH) DRS specification that provides a standardized API that enables researchers and other data consumers to access and retrieve data objects from various data repositories in a consistent and cloud-agnostic way. This implementation provides information for data objects in the SPARC repository (sparc.science).	^(?:[a-zA-Z]+\/)?[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$	package/8ca67504-3167-4cc8-ba74-98137bb7cd0a		https://services.scicrunch.io/sparc/drs/v1/package/$1				False														sparc.drs																		
sparql	SPARQL Operation	https://www.w3.org/ns/sparql	Used for operations in SPARQL, such as ceil() and bound().		ceil		http://www.w3.org/ns/sparql#$1				False																																
spbase	SpBase	http://spbase.org	SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.		SPU_000001		http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$1				True												nbdc00686									spbase											
spd	Spider Ontology	http://research.amnh.org/atol/files/	An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).	^\d{7}$	0000001	ramirez@macn.gov.ar	http://purl.obolibrary.org/obo/SPD_$1		http://purl.obolibrary.org/obo/spd.obo		False	SPD			SPD	SPD											spd	spd	SPD			spdo						P4537	Q42404539				
spdx	Software Package Data Exchange License	https://spdx.org/licenses	The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.	^[0-9A-Za-z\-.\+]+$	CC-BY-1.0	gary@sourceauditor.com	https://spdx.org/licenses/$1	https://w3id.org/biopragmatics/resources/spdx/spdx.owl	https://w3id.org/biopragmatics/resources/spdx/spdx.obo	spdx.license|spdx.licenses	False			20514											spdx	spdx																	
spdx.term	Software Package Data Exchange RDF Vocabulary	https://spdx.org/rdf/terms/	A dictionary of named properties and classes for Software Package Data Exchange (SPDX) - an open standard for communicating software bill of material information, including components, licenses, copyrights, and security references. SPDX reduces redundant work by providing a common format for companies and communities to share important data, thereby streamlining and improving compliance. [from homepage]		annotation	gary@sourceauditor.com	http://spdx.org/rdf/terms#$1			spdx.terms	False																																
sphn	Swiss Personalized Health Network Schema	https://www.sphn.ch	The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/).	^\S+$	Allergy	Sabine.Oesterle@sib.swiss	https://biomedit.ch/rdf/sphn-ontology/sphn#$1	https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/raw/master/rdf_schema/sphn_rdf_schema.owl			False																																
spike.map	SPIKE Map	http://www.cs.tau.ac.il/~spike/	SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.	^spike\d{5}$	spike00001	Yossih@tauex.tau.ac.il	http://www.cs.tau.ac.il/~spike/maps/$1.html				False				SPIKE.MAP										spike.map	spike.map						spike											
splash	Spectra Hash Code	http://mona.fiehnlab.ucdavis.edu/	The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.	^splash\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$	splash10-0zq2000000-77302b0326a418630a84	ofiehn@ucdavis.edu	http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1				False				SPLASH										splash	splash																	
splicenest	SpliceNest	http://splicenest.molgen.mpg.de/	SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome.		Hs635		http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1				True																					splicenest											
spp	Signaling Pathways Project	https://www.signalingpathways.org/index.jsf	The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.	^10.\w{4}/\w{10}$	10.1621/vwN2g2HaX3	nmckenna@bcm.edu	https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1				False														spp								r3d100013650										
srao	FAIRsharing Subject Ontology	https://github.com/FAIRsharing/subject-ontology	The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.	^\d{7}$	0000400	allyson.lister@oerc.ox.ac.uk	http://www.fairsharing.org/ontology/subject/SRAO_$1	https://github.com/FAIRsharing/subject-ontology/raw/refs/heads/master/SRAO.owl	https://github.com/FAIRsharing/subject-ontology/raw/refs/heads/master/SRAO.obo		False																	srao															
ssbd.dataset	System Science of Biological Dynamics dataset	https://ssbd.riken.jp	Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.	^\d+$	1	sonami@riken.jp	https://ssbd.riken.jp/database/dataset/$1				False																																
ssbd.project	System Science of Biological Dynamics project	https://ssbd.riken.jp	Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.	^\d+$	1		https://ssbd.riken.jp/database/project/$1				False																																
ssn	Semantic Sensor Network Ontology	https://www.w3.org/TR/vocab-ssn	This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.		hasProperty	dr.shorthair@pm.me	http://www.w3.org/ns/ssn/$1				False	SSN	SSN			SSN								ssn											ssn					ssn			
ssn.system	System capabilities, operating ranges, and survival ranges ontology	https://www.w3.org/TR/vocab-ssn/	This ontology describes system capabilities, operating ranges, and survival ranges. Please report any errors to the W3C Spatial Data on the Web Working Group via the SDW WG Public List public-sdw-wg@w3.org		qualityOfObservation	dr.shorthair@pm.me	http://www.w3.org/ns/ssn/systems/$1				False																								ssnsystem								
ssrn.article	Social Science Research Network Article	https://ssrn.com	identifier for an article/paper at the SSRN		1667659		https://ssrn.com/abstract=$1				False																											P893					
ssrn.author	Social Science Research Network Author	https://ssrn.com	identifier for an author at the Social Science Research Network	^[1-9]\d{0,6}$	112517		https://ssrn.com/author=$1				False																											P3747					
sssom	Simple Standard for Sharing Ontological Mappings	https://w3id.org/sssom	"SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as ""sssom:mapping_justification"" are defined in the sssom namespace."	^[A-Za-z_]+$	mapping_justification	nicolas.matentzoglu@gmail.com	https://w3id.org/sssom/$1				False																																
sstoss	Sequence-Structural Templates of Single-member Superfamilies	http://caps.ncbs.res.in/SSTOSS/index.htm	SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies.		01.01.005		http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1				True																					sstoss											
stap	Statistical Torsional Angles Potentials	http://psb.kobic.re.kr/STAP/refinement/	STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).	^[0-9][A-Za-z0-9]{3}$	1a24	bhsung@kribb.re.kr	http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1				True				STAP										stap	stap																	
stato	The Statistical Methods Ontology	http://stato-ontology.org/	STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.	^\d{7}$	0000288	proccaserra@gmail.com	http://purl.obolibrary.org/obo/STATO_$1				False	STATO			STATO	STATO									stato		stato	stato	STATO						stato				Q83428681				
stitch	Search Tool for Interactions of Chemicals	http://stitch.embl.de/	STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.	^\w{14}$	BQJCRHHNABKAKU	bork@embl.de	http://stitch.embl.de/interactions/$1				False				STITCH										stitch	stitch				313		stitch	r3d100012165										
stn	FDA Submission Tracking Number	https://www.fda.gov/media/128698/download	The pre-IND tracking number for submissions to the FDA		125768						False																																
storedb	Store DB	https://www.storedb.org/	STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.	^(STUDY|FILE|DATASET)\d+$	STUDY1040	PNS12@cam.ac.uk	https://www.storedb.org/?$1				False				STOREDB								nbdc02191		storedb	storedb							r3d100011049										
storedb.dataset	StoreDB Dataset	https://www.storedb.org/	Datasets inside StoreDB at University of Cambridge	^\d+$	1251		https://www.storedb.org/?STOREDB:DATASET$1				True																																
storedb.file	StoreDB File	https://www.storedb.org/	File inside StoreDB at University of Cambridge	^\d+$	12929		https://www.storedb.org/store_v3/download.jsp?fileId=$1				False																																
storedb.study	StoreDB Study	https://www.storedb.org/	Study inside StoreDB at University of Cambridge	^\d+$	1174		https://www.storedb.org/store_v3/study.jsp?studyId=$1				False																																
streptomedb	StreptomeDB	http://streptomedb.vm.uni-freiburg.de/streptomedb	Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces.	^\d+$	15753	stefan.guenther@pharmazie.uni-freiburg.de	http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/$1				False																																
string	Search Tool for Retrieval of Interacting Genes/Proteins	http://string-db.org/	"STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.
The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$	P53350	bork@embl.de	https://string-db.org/cgi/network?identifier=$1				False				STRING						2302		nbdc00690		string	string				93		string	r3d100010604				DB-0141					uniprot	
sty	UMLS Semantic Types Ontology	https://lhncbc.nlm.nih.gov/semanticnetwork/	UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.	^T\d{3}$	T039	olivier@nlm.nih.gov	https://uts.nlm.nih.gov/uts/umls/semantic-network/$1	https://w3id.org/biopragmatics/resources/sty/sty.owl	https://w3id.org/biopragmatics/resources/sty/sty.obo	UMLSSG|umls.st|umls.sty	False	STY	STY	21017		STY				STY																		P11955					
subtilist	Bacillus subtilis genome sequencing project	http://genolist.pasteur.fr/SubtiList/	"SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.
SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."	^BG\d+$	BG11523	antoine.danchin@normalesup.org	http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1				True				SUBTILIST										subtilist	subtilist						subtilist											
subtiwiki	SubtiWiki	http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page	"SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. 
Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."	^BSU\d{5}$	BSU29180	jstuelk@gwdg.de	http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1				False				SUBTIWIKI								nbdc00693		subtiwiki	subtiwiki						subtiwiki											
sugarbind	SugarBind	http://sugarbind.expasy.org/	The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.	^[A-Za-z]+\/[0-9]+$	lectins/172	frederique.lisacek@isb-sib.ch	http://sugarbind.expasy.org/$1				False	SUGARBIND			SUGARBIND	SUGARBIND							nbdc02224		sugarbind	sugarbind																	
sulo	Simplified Upper Level Ontology	https://aidava-dev.github.io/sulo/	The Simplified Upper Level Ontology (SULO) is ontology with a minimal set of classes and relations to guide the development of a personal health knowledge graph. [from homepage]		Capability	michel.dumontier@gmail.com	https://w3id.org/sulo/$1				False													sulo																			
supfam	SUPERFAMILY	http://supfam.org/SUPERFAMILY/	SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.	^\w+$	SSF57615	pandura@mrc-lmb.cam.ac.uk	http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1				False				SUPFAM										supfam	supfam						superfamily					DB-0155						
suprabank.additive	SupraBank Additive	https://suprabank.org/additives	Identifiers for chemicals used as additives		10		https://suprabank.org/additives/$1				False																																
suprabank.buffer	SupraBank Buffer	https://suprabank.org/buffers	Identifiers for chemicals used as buffers	^\d+$	189		https://suprabank.org/buffers/$1				False																																
suprabank.interaction	SupraBank Interaction	https://suprabank.org/interactions	Interactions are SupraBank's way to collect information about experiments that describe the binding interaction between molecules. The form for creating an interaction enables you to list all experimental conditions. An interaction is similar to an entry in a table in your scientific publication, but providing machine readable comprehensive information. (from homepage)	^\d+$	2329		https://suprabank.org/interactions/$1				False																																
suprabank.molecule	SupraBank Molecule	https://suprabank.org/molecules	Identifiers for molecules in SupraBank	^\d+$	2196		https://suprabank.org/molecules/$1				False																																
suprabank.solvent	SupraBank Solvent	https://suprabank.org/solvents	Identifiers for chemicals used as solvents in SupraBank	^\d+$	57		https://suprabank.org/solvents/$1				False																																
sustaingraph	SustainGraph Ontology	https://netmode.gitlab.io/sustaingraph-ontology/	The SustainGraph ontology is developed to track the United Nations Sustainable Development Goals(SDGs) at national and regional level, their evolution accross time and inter-connectedness with existing and emerging policies and directives at European Union (EU) and global level. It is described using W3C RDF Schema and the Web Ontology Language.		6T		https://netmode.gitlab.io/sustaingraph/$1				False																								sustaingraph								
swan	Semantic Web Applications in Neuromedicine	https://code.google.com/archive/p/swan-ontology	SWAN ontology consists in a collection of ontologies used to create, manage and share scientific knowledge bases.					https://rawcdn.githack.com/pav-ontology/swan-ontology/2.0.1/swan.owl			True																																
sweet	Semantic Web for Earth and Environment Technology Ontology	http://sweetontology.net/	The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).		realmGeol/GeologicFeature		http://sweetontology.net/human/$1		https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/sources/sweetrealm.obo		False	SWEET		20510		SWEET																			sweet								
sweet.hu	SWEET Ontology Human	http://sweetontology.net/human/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human		Behavior		http://sweetontology.net/human/$1			sohu	False																														sweet		
sweet.hua	SWEET Ontology Human Agriculture	http://sweetontology.net/humanAgriculture/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Agriculture		AnimalProduction		http://sweetontology.net/humanAgriculture/$1			sohua	False																														sweet		
sweet.huc	SWEET Ontology Human Commerce	http://sweetontology.net/humanCommerce/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Commerce		Assembly		http://sweetontology.net/humanCommerce/$1			sohuc	False																														sweet		
sweet.hud	SWEET Ontology Human Decision	http://sweetontology.net/humanDecision/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Decision		Allocation		http://sweetontology.net/humanDecision/$1			sohud	False																														sweet		
sweet.huea	SWEET Ontology Human Environmental Assessment	http://sweetontology.net/humanEnvirAssessment/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Assessment		CEMS		http://sweetontology.net/humanEnvirAssessment/$1			sohuea	False																														sweet		
sweet.hueccont	SWEET Ontology Human Environmental Control	http://sweetontology.net/humanEnvirControl/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Control		Abatement		http://sweetontology.net/humanEnvirControl/$1			sohueccont	False																														sweet		
sweet.huecons	SWEET Ontology Human Environmental Conservation	http://sweetontology.net/humanEnvirConservation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Conservation		Conservation		http://sweetontology.net/humanEnvirConservation/$1			sohuecons	False																														sweet		
sweet.hues	SWEET Ontology Human Environmental Standards	http://sweetontology.net/humanEnvirStandards/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Standards		AAQS		http://sweetontology.net/humanEnvirStandards/$1			sohues	False																														sweet		
sweet.huj	SWEET Ontology Human Jurisdiction	http://sweetontology.net/humanJurisdiction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Jurisdiction		AdministrativeRegion		http://sweetontology.net/humanJurisdiction/$1			sohuj	False																														sweet		
sweet.hukd	SWEET Ontology Human Knowledge Domain	http://sweetontology.net/humanKnowledgeDomain/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Knowledge Domain		Anatomy		http://sweetontology.net/humanKnowledgeDomain/$1			sohukd	False																														sweet		
sweet.hur	SWEET Ontology Human Research	http://sweetontology.net/humanResearch/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Research		Analysis		http://sweetontology.net/humanResearch/$1			sohur	False																														sweet		
sweet.hut	SWEET Ontology Human Transportation	http://sweetontology.net/humanTransportation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Transportation		AirTraffic		http://sweetontology.net/humanTransportation/$1			sohut	False																														sweet		
sweet.hutr	SWEET Ontology Human Technology Readiness	http://sweetontology.net/humanTechReadiness/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Technology Readiness		TRL		http://sweetontology.net/humanTechReadiness/$1			sohutr	False																														sweet		
sweet.ma	SWEET Ontology Materials	http://sweetontology.net/matr/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Materials		Air		http://sweetontology.net/matr/$1			soma	False																														sweet		
sweet.maae	SWEET Ontology Material Aerosol	http://sweetontology.net/matrAerosol/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Aerosol		Aerosol		http://sweetontology.net/matrAerosol/$1			somaae	False																														sweet		
sweet.mab	SWEET Ontology Material Biomass	http://sweetontology.net/matrBiomass/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Biomass		AnimalWaste		http://sweetontology.net/matrBiomass/$1			somab	False																														sweet		
sweet.mac	SWEET Ontology Material Compound	http://sweetontology.net/matrCompound/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Compound		ChemicalCompound		http://sweetontology.net/matrCompound/$1			somac	False																														sweet		
sweet.mael	SWEET Ontology Material Element	http://sweetontology.net/matrElement/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Element		Actinoid		http://sweetontology.net/matrElement/$1			somael	False																														sweet		
sweet.maem	SWEET Ontology Material Elemental Molecule	http://sweetontology.net/matrElementalMolecule/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Elemental Molecule		Allotrope		http://sweetontology.net/matrElementalMolecule/$1			somaem	False																														sweet		
sweet.maen	SWEET Ontology Material Energy	http://sweetontology.net/matrEnergy/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Energy		Battery		http://sweetontology.net/matrEnergy/$1			somaen	False																														sweet		
sweet.maeq	SWEET Ontology Material Equipment	http://sweetontology.net/matrEquipment/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Equipment		Aircraft		http://sweetontology.net/matrEquipment/$1			somaeq	False																														sweet		
sweet.maf	SWEET Ontology Material Facility	http://sweetontology.net/matrFacility/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Facility		AgriculturalProductionFacility		http://sweetontology.net/matrFacility/$1			somaf	False																														sweet		
sweet.maind	SWEET Ontology Material Industrial	http://sweetontology.net/matrIndustrial/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Industrial		Alloy		http://sweetontology.net/matrIndustrial/$1			somaind	False																														sweet		
sweet.mains	SWEET Ontology Material Instrument	http://sweetontology.net/matrInstrument/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Instrument		Anemometer		http://sweetontology.net/matrInstrument/$1			somains	False																														sweet		
sweet.maio	SWEET Ontology Material Ion	http://sweetontology.net/matrIon/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Ion		Anion		http://sweetontology.net/matrIon/$1			somaio	False																														sweet		
sweet.mais	SWEET Ontology Material Isotope	http://sweetontology.net/matrIsotope/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Isotope		AlphaParticle		http://sweetontology.net/matrIsotope/$1			somais	False																														sweet		
sweet.mamic	SWEET Ontology Material Microbiota	http://sweetontology.net/matrMicrobiota/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Microbiota		Algae		http://sweetontology.net/matrMicrobiota/$1			somamic	False																														sweet		
sweet.mamin	SWEET Ontology Material Mineral	http://sweetontology.net/matrMineral/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Mineral		Calcite		http://sweetontology.net/matrMineral/$1			somamin	False																														sweet		
sweet.man	SWEET Ontology Material Animal	http://sweetontology.net/matrAnimal/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Animal		AcornWorm		http://sweetontology.net/matrAnimal/$1			soman	False																														sweet		
sweet.manr	SWEET Ontology Material Natural Resource	http://sweetontology.net/matrNaturalResource/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Natural Resource		Anthracite		http://sweetontology.net/matrNaturalResource/$1			somanr	False																														sweet		
sweet.maoc	SWEET Ontology Material Organic Compound	http://sweetontology.net/matrOrganicCompound/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Organic Compound		Alkane		http://sweetontology.net/matrOrganicCompound/$1			somaoc	False																														sweet		
sweet.mapa	SWEET Ontology Material Particle	http://sweetontology.net/matrParticle/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Particle		AnomalousEnergeticParticle		http://sweetontology.net/matrParticle/$1			somapa	False																														sweet		
sweet.mapl	SWEET Ontology Material Plant	http://sweetontology.net/matrPlant/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Plant		Branch		http://sweetontology.net/matrPlant/$1			somapl	False																														sweet		
sweet.marock	SWEET Ontology Material Rock	http://sweetontology.net/matrRock/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock		Breccia		http://sweetontology.net/matrRock/$1			somarock	False																														sweet		
sweet.marocki	SWEET Ontology Material Rock Igneous	http://sweetontology.net/matrRockIgneous/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock Igneous		Aa		http://sweetontology.net/matrRockIgneous/$1			somarocki	False																														sweet		
sweet.mas	SWEET Ontology Material Sediment	http://sweetontology.net/matrSediment/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Sediment		Alluvium		http://sweetontology.net/matrSediment/$1			somas	False																														sweet		
sweet.maw	SWEET Ontology Material Water	http://sweetontology.net/matrWater/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Water		BlackWater		http://sweetontology.net/matrWater/$1			somaw	False																														sweet		
sweet.ph	SWEET Ontology Phenomena	http://sweetontology.net/phen/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena		AirSeaExchange		http://sweetontology.net/phen/$1			soph	False																														sweet		
sweet.phatmo	SWEET Ontology Phenomena Atmosphere	http://sweetontology.net/phenAtmo/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere		AirMass		http://sweetontology.net/phenAtmo/$1			sophatmo	False																														sweet		
sweet.phatmoc	SWEET Ontology Phenomena Atmosphere Cloud	http://sweetontology.net/phenAtmoCloud/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Cloud		Altostratus		http://sweetontology.net/phenAtmoCloud/$1			sophatmoc	False																														sweet		
sweet.phatmofo	SWEET Ontology Phenomena Atmosphere Fog	http://sweetontology.net/phenAtmoFog/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Fog		AdvectionFog		http://sweetontology.net/phenAtmoFog/$1			sophatmofo	False																														sweet		
sweet.phatmofr	SWEET Ontology Phenomena Atmosphere Front	http://sweetontology.net/phenAtmoFront/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Front		ColdFront		http://sweetontology.net/phenAtmoFront/$1			sophatmofr	False																														sweet		
sweet.phatmol	SWEET Ontology Phenomena Atmosphere Lightning	http://sweetontology.net/phenAtmoLightning/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Lightning		BallLightning		http://sweetontology.net/phenAtmoLightning/$1			sophatmol	False																														sweet		
sweet.phatmopc	SWEET Ontology Phenomena Atmosphere Precipitation	http://sweetontology.net/phenAtmoPrecipitation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Precipitation		AtmosphericPrecipitation		http://sweetontology.net/phenAtmoPrecipitation/$1			sophatmopc	False																														sweet		
sweet.phatmops	SWEET Ontology Phenomena Atmosphere Pressure	http://sweetontology.net/phenAtmoPressure/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Pressure		AtmosphericAnticyclone		http://sweetontology.net/phenAtmoPressure/$1			sophatmops	False																														sweet		
sweet.phatmos	SWEET Ontology Phenomena Atmosphere Sky	http://sweetontology.net/phenAtmoSky/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Sky		AirPollution		http://sweetontology.net/phenAtmoSky/$1			sophatmos	False																														sweet		
sweet.phatmot	SWEET Ontology Phenomena Atmosphere Transport	http://sweetontology.net/phenAtmoTransport/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Transport		AcidFog		http://sweetontology.net/phenAtmoTransport/$1			sophatmot	False																														sweet		
sweet.phatmow	SWEET Ontology Phenomena Atmosphere Wind	http://sweetontology.net/phenAtmoWind/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind		AgeostrophicWind		http://sweetontology.net/phenAtmoWind/$1			sophatmow	False																														sweet		
sweet.phatmowm	SWEET Ontology Phenomena Atmosphere Wind Mesoscale	http://sweetontology.net/phenAtmoWindMesoscale/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind Mesoscale		AnabaticWind		http://sweetontology.net/phenAtmoWindMesoscale/$1			sophatmowm	False																														sweet		
sweet.phb	SWEET Ontology Phenomena Biology	http://sweetontology.net/phenBiol/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Biology		Assimilation		http://sweetontology.net/phenBiol/$1			sophb	False																														sweet		
sweet.phcm	SWEET Ontology Phenomena Cycle Material	http://sweetontology.net/phenCycleMaterial/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle Material		BiogeochemicalCycle		http://sweetontology.net/phenCycleMaterial/$1			sophcm	False																														sweet		
sweet.phcr	SWEET Ontology Phenomena Cryosphere	http://sweetontology.net/phenCryo/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cryosphere		Accumulation		http://sweetontology.net/phenCryo/$1			sophcr	False																														sweet		
sweet.phcy	SWEET Ontology Phenomena Cycle	http://sweetontology.net/phenCycle/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle		AnnualCycle		http://sweetontology.net/phenCycle/$1			sophcy	False																														sweet		
sweet.phec	SWEET Ontology Phenomena Ecology	http://sweetontology.net/phenEcology/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ecology		Adaptation		http://sweetontology.net/phenEcology/$1			sophec	False																														sweet		
sweet.phei	SWEET Ontology Phenomena Environmental Impact	http://sweetontology.net/phenEnvirImpact/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Environmental Impact		AirPollution		http://sweetontology.net/phenEnvirImpact/$1			sophei	False																														sweet		
sweet.phel	SWEET Ontology Phenomena ElectroMagnetic	http://sweetontology.net/phenElecMag/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena ElectroMagnetic		CurrentSheet		http://sweetontology.net/phenElecMag/$1			sophel	False																														sweet		
sweet.phen	SWEET Ontology Phenomena Energy	http://sweetontology.net/phenEnergy/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Energy		ActiveSolarEnergy		http://sweetontology.net/phenEnergy/$1			sophen	False																														sweet		
sweet.phfd	SWEET Ontology Phenomena Fluid Dynamics	http://sweetontology.net/phenFluidDynamics/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Dynamics		Anticyclone		http://sweetontology.net/phenFluidDynamics/$1			sophfd	False																														sweet		
sweet.phfi	SWEET Ontology Phenomena Fluid Instability	http://sweetontology.net/phenFluidInstability/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Instability		AbsoluteInstability		http://sweetontology.net/phenFluidInstability/$1			sophfi	False																														sweet		
sweet.phft	SWEET Ontology Phenomena Fluid Transport	http://sweetontology.net/phenFluidTransport/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Transport		Advection		http://sweetontology.net/phenFluidTransport/$1			sophft	False																														sweet		
sweet.phg	SWEET Ontology Phenomena Geologic	http://sweetontology.net/phenGeol/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic		CompositeProcess		http://sweetontology.net/phenGeol/$1			sophg	False																														sweet		
sweet.phgf	SWEET Ontology Phenomena Geologic Fault	http://sweetontology.net/phenGeolFault/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Fault		Detachment		http://sweetontology.net/phenGeolFault/$1			sophgf	False																														sweet		
sweet.phgg	SWEET Ontology Phenomena Geologic Geomorphology	http://sweetontology.net/phenGeolGeomorphology/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Geomorphology		Abrasion		http://sweetontology.net/phenGeolGeomorphology/$1			sophgg	False																														sweet		
sweet.phgs	SWEET Ontology Phenomena Geologic Seismicity	http://sweetontology.net/phenGeolSeismicity/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Seismicity		Aftershock		http://sweetontology.net/phenGeolSeismicity/$1			sophgs	False																														sweet		
sweet.phgt	SWEET Ontology Phenomena Geologic Tectonic	http://sweetontology.net/phenGeolTectonic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Tectonic		AsymmetricHeatFlow		http://sweetontology.net/phenGeolTectonic/$1			sophgt	False																														sweet		
sweet.phgv	SWEET Ontology Phenomena Geologic Volcano	http://sweetontology.net/phenGeolVolcano/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Volcano		EruptionCloud		http://sweetontology.net/phenGeolVolcano/$1			sophgv	False																														sweet		
sweet.phhe	SWEET Ontology Phenomena Heliosphere	http://sweetontology.net/phenHelio/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Heliosphere		Airglow		http://sweetontology.net/phenHelio/$1			sophhe	False																														sweet		
sweet.phhy	SWEET Ontology Phenomena Hydrosphere	http://sweetontology.net/phenHydro/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Hydrosphere		BaseFlow		http://sweetontology.net/phenHydro/$1			sophhy	False																														sweet		
sweet.phm	SWEET Ontology Phenomena Mixing	http://sweetontology.net/phenMixing/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Mixing		Aeration		http://sweetontology.net/phenMixing/$1			sophm	False																														sweet		
sweet.pho	SWEET Ontology Phenomena Ocean	http://sweetontology.net/phenOcean/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean		OceanPhenomena		http://sweetontology.net/phenOcean/$1			sopho	False																														sweet		
sweet.phoc	SWEET Ontology Phenomena Ocean Coastal	http://sweetontology.net/phenOceanCoastal/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Coastal		Attrition		http://sweetontology.net/phenOceanCoastal/$1			sophoc	False																														sweet		
sweet.phod	SWEET Ontology Phenomena Ocean Dynamics	http://sweetontology.net/phenOceanDynamics/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Dynamics		BoundaryCurrent		http://sweetontology.net/phenOceanDynamics/$1			sophod	False																														sweet		
sweet.phpc	SWEET Ontology Phenomena Planetary Climate	http://sweetontology.net/phenPlanetClimate/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Planetary Climate		Climate		http://sweetontology.net/phenPlanetClimate/$1			sophpc	False																														sweet		
sweet.phr	SWEET Ontology Phenomena Reaction	http://sweetontology.net/phenReaction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Reaction		Activation		http://sweetontology.net/phenReaction/$1			sophr	False																														sweet		
sweet.phso	SWEET Ontology Phenomena Solid	http://sweetontology.net/phenSolid/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Solid		Ablation		http://sweetontology.net/phenSolid/$1			sophso	False																														sweet		
sweet.phst	SWEET Ontology Phenomena Star	http://sweetontology.net/phenStar/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Star		Asteroseismology		http://sweetontology.net/phenStar/$1			sophst	False																														sweet		
sweet.phsy	SWEET Ontology Phenomena System	http://sweetontology.net/phenSystem/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System		Accumulation		http://sweetontology.net/phenSystem/$1			sophsy	False																														sweet		
sweet.phsyc	SWEET Ontology Phenomena System Complexity	http://sweetontology.net/phenSystemComplexity/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System Complexity		Cascade		http://sweetontology.net/phenSystemComplexity/$1			sophsyc	False																														sweet		
sweet.phw	SWEET Ontology Phenomena Wave	http://sweetontology.net/phenWave/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Wave		Acoustic		http://sweetontology.net/phenWave/$1			sophw	False																														sweet		
sweet.phwn	SWEET Ontology Phenomena Wave Noise	http://sweetontology.net/phenWaveNoise/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Wave Noise		AmbientNoise		http://sweetontology.net/phenWaveNoise/$1			sophwn	False																														sweet		
sweet.proc	SWEET Ontology Process	http://sweetontology.net/proc/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process		Force		http://sweetontology.net/proc/$1			soproc	False																														sweet		
sweet.procc	SWEET Ontology Process Chemical	http://sweetontology.net/procChemical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Chemical		Absorption		http://sweetontology.net/procChemical/$1			soprocc	False																														sweet		
sweet.procp	SWEET Ontology Process Physical	http://sweetontology.net/procPhysical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Physical		Abrasion		http://sweetontology.net/procPhysical/$1			soprocp	False																														sweet		
sweet.procsc	SWEET Ontology Process State Change	http://sweetontology.net/procStateChange/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process State Change		Boiling		http://sweetontology.net/procStateChange/$1			soprocsc	False																														sweet		
sweet.procw	SWEET Ontology Process Wave	http://sweetontology.net/procWave/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Wave		Absorption		http://sweetontology.net/procWave/$1			soprocw	False																														sweet		
sweet.prop	SWEET Ontology Property	http://sweetontology.net/prop/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property		Accuracy		http://sweetontology.net/prop/$1			soprop	False																														sweet		
sweet.propb	SWEET Ontology Property Binary	http://sweetontology.net/propBinary/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Binary		BinaryProperty		http://sweetontology.net/propBinary/$1			sopropb	False																														sweet		
sweet.propcap	SWEET Ontology Property Capacity	http://sweetontology.net/propCapacity/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Capacity		Capacity		http://sweetontology.net/propCapacity/$1			sopropcap	False																														sweet		
sweet.propcat	SWEET Ontology Property Categorical	http://sweetontology.net/propCategorical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Categorical		CategoricalProperty		http://sweetontology.net/propCategorical/$1			sopropcat	False																														sweet		
sweet.propcha	SWEET Ontology Property Charge	http://sweetontology.net/propCharge/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Charge		Capacitance		http://sweetontology.net/propCharge/$1			sopropcha	False																														sweet		
sweet.propche	SWEET Ontology Property Chemical	http://sweetontology.net/propChemical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Chemical		Abundance		http://sweetontology.net/propChemical/$1			sopropche	False																														sweet		
sweet.propcon	SWEET Ontology Property Conductivity	http://sweetontology.net/propConductivity/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Conductivity		Conductance		http://sweetontology.net/propConductivity/$1			sopropcon	False																														sweet		
sweet.propcou	SWEET Ontology Property Count	http://sweetontology.net/propCount/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Count		AtomicNeutralNumberDensity		http://sweetontology.net/propCount/$1			sopropcou	False																														sweet		
sweet.propdife	SWEET Ontology Property Difference	http://sweetontology.net/propDifference/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Difference		Amplitude		http://sweetontology.net/propDifference/$1			sopropdife	False																														sweet		
sweet.propdifu	SWEET Ontology Property Diffusivity	http://sweetontology.net/propDiffusivity/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Diffusivity		Confluence		http://sweetontology.net/propDiffusivity/$1			sopropdifu	False																														sweet		
sweet.propdr	SWEET Ontology Property Dimensionless Ratio	http://sweetontology.net/propDimensionlessRatio/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Dimensionless Ratio		BowenRatio		http://sweetontology.net/propDimensionlessRatio/$1			sopropdr	False																														sweet		
sweet.prope	SWEET Ontology Property Energy	http://sweetontology.net/propEnergy/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy		AvailablePotentialEnergy		http://sweetontology.net/propEnergy/$1			soprope	False																														sweet		
sweet.propef	SWEET Ontology Property Energy Flux	http://sweetontology.net/propEnergyFlux/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy Flux		AbsorbedSolarRadiation		http://sweetontology.net/propEnergyFlux/$1			sopropef	False																														sweet		
sweet.propfr	SWEET Ontology Property Fraction	http://sweetontology.net/propFraction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Fraction		Absorptance		http://sweetontology.net/propFraction/$1			sopropfr	False																														sweet		
sweet.propfu	SWEET Ontology Property Function	http://sweetontology.net/propFunction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Function		AnnualAverage		http://sweetontology.net/propFunction/$1			sopropfu	False																														sweet		
sweet.propi	SWEET Ontology Property Index	http://sweetontology.net/propIndex/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Index		AdaptiveCapacity		http://sweetontology.net/propIndex/$1			sopropi	False																														sweet		
sweet.propm	SWEET Ontology Property Mass	http://sweetontology.net/propMass/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass		BulkDensity		http://sweetontology.net/propMass/$1			sopropm	False																														sweet		
sweet.propmf	SWEET Ontology Property Mass Flux	http://sweetontology.net/propMassFlux/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass Flux		DarcyFlux		http://sweetontology.net/propMassFlux/$1			sopropmf	False																														sweet		
sweet.propo	SWEET Ontology Property Ordinal	http://sweetontology.net/propOrdinal/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Ordinal		ActivityLevel		http://sweetontology.net/propOrdinal/$1			sopropo	False																														sweet		
sweet.propp	SWEET Ontology Property Pressure	http://sweetontology.net/propPressure/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Pressure		AirPressure		http://sweetontology.net/propPressure/$1			sopropp	False																														sweet		
sweet.propq	SWEET Ontology Property Quantity	http://sweetontology.net/propQuantity/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Quantity		BalanceEquation		http://sweetontology.net/propQuantity/$1			sopropq	False																														sweet		
sweet.propr	SWEET Ontology Property Rotation	http://sweetontology.net/propRotation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Rotation		AbsoluteVorticity		http://sweetontology.net/propRotation/$1			sopropr	False																														sweet		
sweet.props	SWEET Ontology Property Space	http://sweetontology.net/propSpace/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space		AngularDistribution		http://sweetontology.net/propSpace/$1			soprops	False																														sweet		
sweet.propsdir	SWEET Ontology Property Space Direction	http://sweetontology.net/propSpaceDirection/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Direction		Angle		http://sweetontology.net/propSpaceDirection/$1			sopropsdir	False																														sweet		
sweet.propsdis	SWEET Ontology Property Space Distance	http://sweetontology.net/propSpaceDistance/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Distance		AttenuationCoefficient		http://sweetontology.net/propSpaceDistance/$1			sopropsdis	False																														sweet		
sweet.propsh	SWEET Ontology Property Space Height	http://sweetontology.net/propSpaceHeight/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Height		Altitude		http://sweetontology.net/propSpaceHeight/$1			sopropsh	False																														sweet		
sweet.propsl	SWEET Ontology Property Space Location	http://sweetontology.net/propSpaceLocation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Location		Center		http://sweetontology.net/propSpaceLocation/$1			sopropsl	False																														sweet		
sweet.propsm	SWEET Ontology Property Space Multidimensional	http://sweetontology.net/propSpaceMultidimensional/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Multidimensional		AngularExtent		http://sweetontology.net/propSpaceMultidimensional/$1			sopropsm	False																														sweet		
sweet.propsp	SWEET Ontology Property Speed	http://sweetontology.net/propSpeed/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Speed		Acceleration		http://sweetontology.net/propSpeed/$1			sopropsp	False																														sweet		
sweet.propst	SWEET Ontology Property Space Thickness	http://sweetontology.net/propSpaceThickness/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Thickness		AverageAnnualPrecipitation		http://sweetontology.net/propSpaceThickness/$1			sopropst	False																														sweet		
sweet.propt	SWEET Ontology Property Temperature	http://sweetontology.net/propTemperature/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Temperature		AntennaTemperature		http://sweetontology.net/propTemperature/$1			sopropt	False																														sweet		
sweet.proptf	SWEET Ontology Property Time Frequency	http://sweetontology.net/propTimeFrequency/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time Frequency		Bandwidth		http://sweetontology.net/propTimeFrequency/$1			soproptf	False																														sweet		
sweet.proptg	SWEET Ontology Property Temperature Gradient	http://sweetontology.net/propTemperatureGradient/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Temperature Gradient		AutoConvectiveLapseRate		http://sweetontology.net/propTemperatureGradient/$1			soproptg	False																														sweet		
sweet.propti	SWEET Ontology Property Time	http://sweetontology.net/propTime/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time		Age		http://sweetontology.net/propTime/$1			sopropti	False																														sweet		
sweet.rea	SWEET Ontology Realm	http://sweetontology.net/realm/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm		Atmosphere		http://sweetontology.net/realm/$1			SWEETRealm|sorea	False																														sweet		
sweet.reaa	SWEET Ontology Realm Atmospheric	http://sweetontology.net/realmAtmo/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric		AtmosphereLayer		http://sweetontology.net/realmAtmo/$1			soreaa	False																														sweet		
sweet.reaab	SWEET Ontology Realm Astrophysical Body	http://sweetontology.net/realmAstroBody/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Body		Asteroid		http://sweetontology.net/realmAstroBody/$1			soreaab	False																														sweet		
sweet.reaabl	SWEET Ontology Realm Atmospheric Boundary Layer	http://sweetontology.net/realmAtmoBoundaryLayer/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Boundary Layer		AtmosphericBoundaryLayer		http://sweetontology.net/realmAtmoBoundaryLayer/$1			soreaabl	False																														sweet		
sweet.reaah	SWEET Ontology Realm Astrophysical Heliosphere	http://sweetontology.net/realmAstroHelio/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Heliosphere		DLayer		http://sweetontology.net/realmAstroHelio/$1			soreaah	False																														sweet		
sweet.reaas	SWEET Ontology Realm Astrophysical	http://sweetontology.net/realmAstroStar/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical		ActiveRegion		http://sweetontology.net/realmAstroStar/$1			soreaas	False																														sweet		
sweet.reaaw	SWEET Ontology Realm Atmospheric Weather	http://sweetontology.net/realmAtmoWeather/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Weather		AdiabaticCondensationLevel		http://sweetontology.net/realmAtmoWeather/$1			soreaaw	False																														sweet		
sweet.reabb	SWEET Ontology Realm Biologic Biome	http://sweetontology.net/realmBiolBiome/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Biologic Biome		Anthromes		http://sweetontology.net/realmBiolBiome/$1			soreabb	False																														sweet		
sweet.reac	SWEET Ontology Realm Cryosphere	http://sweetontology.net/realmCryo/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Cryosphere		AblationZone		http://sweetontology.net/realmCryo/$1			soreac	False																														sweet		
sweet.reacz	SWEET Ontology Realm Climate Zone	http://sweetontology.net/realmClimateZone/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Climate Zone		A		http://sweetontology.net/realmClimateZone/$1			soreacz	False																														sweet		
sweet.reaer	SWEET Ontology Realm Earth Reference	http://sweetontology.net/realmEarthReference/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Earth Reference		AbyssopelagicZone		http://sweetontology.net/realmEarthReference/$1			soreaer	False																														sweet		
sweet.reag	SWEET Ontology Realm Geologic	http://sweetontology.net/realmGeol/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic		Asthenosphere		http://sweetontology.net/realmGeol/$1			soreag	False																														sweet		
sweet.reagb	SWEET Ontology Realm Geologic Basin	http://sweetontology.net/realmGeolBasin/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Basin		BackArcBasin		http://sweetontology.net/realmGeolBasin/$1			soreagb	False																														sweet		
sweet.reagcons	SWEET Ontology Realm Geologic Constituent	http://sweetontology.net/realmGeolConstituent/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Constituent		ArmoredRelictInclusion		http://sweetontology.net/realmGeolConstituent/$1			soreagcons	False																														sweet		
sweet.reagcont	SWEET Ontology Realm Geologic Continental	http://sweetontology.net/realmGeolContinental/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Continental		ActiveContinent		http://sweetontology.net/realmGeolContinental/$1			soreagcont	False																														sweet		
sweet.reagoc	SWEET Ontology Realm Geologic Oceanic	http://sweetontology.net/realmGeolOceanic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Oceanic		AccretionaryPrism		http://sweetontology.net/realmGeolOceanic/$1			soreagoc	False																														sweet		
sweet.reagor	SWEET Ontology Realm Geologic Orogen	http://sweetontology.net/realmGeolOrogen/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Orogen		Arc		http://sweetontology.net/realmGeolOrogen/$1			soreagor	False																														sweet		
sweet.reah	SWEET Ontology Realm Hydrosphere	http://sweetontology.net/realmHydro/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Hydrosphere		Aquiclude		http://sweetontology.net/realmHydro/$1			soreah	False																														sweet		
sweet.reahb	SWEET Ontology Realm Hydrosphere Body	http://sweetontology.net/realmHydroBody/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Hydrosphere Body		Aqueduct		http://sweetontology.net/realmHydroBody/$1			soreahb	False																														sweet		
sweet.real	SWEET Ontology Realm Landform	http://sweetontology.net/realmLandform/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Landform		CentralCreekCrater		http://sweetontology.net/realmLandform/$1			soreal	False																														sweet		
sweet.reala	SWEET Ontology Realm Land Aeolian	http://sweetontology.net/realmLandAeolian/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Aeolian		Aeolian		http://sweetontology.net/realmLandAeolian/$1			soreala	False																														sweet		
sweet.realc	SWEET Ontology Realm Land Coastal	http://sweetontology.net/realmLandCoastal/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Coastal		Atoll		http://sweetontology.net/realmLandCoastal/$1			sorealc	False																														sweet		
sweet.realf	SWEET Ontology Realm Land Fluvial	http://sweetontology.net/realmLandFluvial/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Fluvial		Alluvial		http://sweetontology.net/realmLandFluvial/$1			sorealf	False																														sweet		
sweet.realg	SWEET Ontology Realm Land Glacial	http://sweetontology.net/realmLandGlacial/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Glacial		Arete		http://sweetontology.net/realmLandGlacial/$1			sorealg	False																														sweet		
sweet.realo	SWEET Ontology Realm Land Orographic	http://sweetontology.net/realmLandOrographic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Orographic		Alpine		http://sweetontology.net/realmLandOrographic/$1			sorealo	False																														sweet		
sweet.realp	SWEET Ontology Realm Land Protected	http://sweetontology.net/realmLandProtected/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Protected		CityPark		http://sweetontology.net/realmLandProtected/$1			sorealp	False																														sweet		
sweet.realt	SWEET Ontology Realm Land Tectonic	http://sweetontology.net/realmLandTectonic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Tectonic		AseismicRidge		http://sweetontology.net/realmLandTectonic/$1			sorealt	False																														sweet		
sweet.realv	SWEET Ontology Realm Land Volcanic	http://sweetontology.net/realmLandVolcanic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Volcanic		Caldera		http://sweetontology.net/realmLandVolcanic/$1			sorealv	False																														sweet		
sweet.reao	SWEET Ontology Realm Ocean	http://sweetontology.net/realmOcean/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean		Abyss		http://sweetontology.net/realmOcean/$1			soreao	False																														sweet		
sweet.reaofe	SWEET Ontology Realm Ocean Feature	http://sweetontology.net/realmOceanFeature/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Feature		EarthEasternBoundaryCurrent		http://sweetontology.net/realmOceanFeature/$1			soreaofe	False																														sweet		
sweet.reaofl	SWEET Ontology Realm Ocean Floor	http://sweetontology.net/realmOceanFloor/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Floor		AbyssalHill		http://sweetontology.net/realmOceanFloor/$1			soreaofl	False																														sweet		
sweet.rear	SWEET Ontology Realm Region	http://sweetontology.net/realmRegion/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Region		Austral		http://sweetontology.net/realmRegion/$1			sorear	False																														sweet		
sweet.reas	SWEET Ontology Realm Soil	http://sweetontology.net/realmSoil/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Soil		A_Horizon		http://sweetontology.net/realmSoil/$1			soreas	False																														sweet		
sweet.rel	SWEET Ontology Relationships	http://sweetontology.net/rela/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships		hasPhenomena		http://sweetontology.net/rela/$1			sorel	False																														sweet		
sweet.relch	SWEET Ontology Relationships Chemical	http://sweetontology.net/relaChemical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Chemical		atomicMass		http://sweetontology.net/relaChemical/$1			sorelch	False																														sweet		
sweet.relcl	SWEET Ontology Relationships Climate	http://sweetontology.net/relaClimate/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Climate		hasAverageAnnualPrecipitation		http://sweetontology.net/relaClimate/$1			sorelcl	False																														sweet		
sweet.relh	SWEET Ontology Relationships Human	http://sweetontology.net/relaHuman/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Human		hasAttribute		http://sweetontology.net/relaHuman/$1			sorelh	False																														sweet		
sweet.relm	SWEET Ontology Relationships Mathematical	http://sweetontology.net/relaMath/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Mathematical		averageOver		http://sweetontology.net/relaMath/$1			sorelm	False																														sweet		
sweet.relph	SWEET Ontology Relationships Physical	http://sweetontology.net/relaPhysical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Physical		colderThan		http://sweetontology.net/relaPhysical/$1			sorelph	False																														sweet		
sweet.relpr	SWEET Ontology Relationships Provenance	http://sweetontology.net/relaProvenance/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Provenance		fillValue		http://sweetontology.net/relaProvenance/$1			sorelpr	False																														sweet		
sweet.relsc	SWEET Ontology Relationships Scientific	http://sweetontology.net/relaSci/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Scientific		causedBy		http://sweetontology.net/relaSci/$1			sorelsc	False																														sweet		
sweet.relsp	SWEET Ontology Relationships Space	http://sweetontology.net/relaSpace/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Space		adjacentTo		http://sweetontology.net/relaSpace/$1			sorelsp	False																														sweet		
sweet.relt	SWEET Ontology Relationships Time	http://sweetontology.net/relaTime/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Time		dayOfYear		http://sweetontology.net/relaTime/$1			sorelt	False																														sweet		
sweet.rep	SWEET Ontology Representation	http://sweetontology.net/repr/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation		CardinalScale		http://sweetontology.net/repr/$1			sorep	False																														sweet		
sweet.repdf	SWEET Ontology Representation Data Format	http://sweetontology.net/reprDataFormat/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Format		ByteOrder		http://sweetontology.net/reprDataFormat/$1			sorepdf	False																														sweet		
sweet.repdm	SWEET Ontology Representation Data Model	http://sweetontology.net/reprDataModel/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Model		Array		http://sweetontology.net/reprDataModel/$1			sorepdm	False																														sweet		
sweet.repdp	SWEET Ontology Representation Data Product	http://sweetontology.net/reprDataProduct/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Product		Archive		http://sweetontology.net/reprDataProduct/$1			sorepdp	False																														sweet		
sweet.repds	SWEET Ontology Representation Data Service	http://sweetontology.net/reprDataService/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service		Access		http://sweetontology.net/reprDataService/$1			sorepds	False																														sweet		
sweet.repdsa	SWEET Ontology Representation Data Servcie Analysis	http://sweetontology.net/reprDataServiceAnalysis/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Servcie Analysis		Animate		http://sweetontology.net/reprDataServiceAnalysis/$1			sorepdsa	False																														sweet		
sweet.repdsg	SWEET Ontology Representation Data Service Geospatial	http://sweetontology.net/reprDataServiceGeospatial/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Geospatial		Buffer		http://sweetontology.net/reprDataServiceGeospatial/$1			sorepdsg	False																														sweet		
sweet.repdsr	SWEET Ontology Representation Data Service Reduction	http://sweetontology.net/reprDataServiceReduction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Reduction		Binning		http://sweetontology.net/reprDataServiceReduction/$1			sorepdsr	False																														sweet		
sweet.repdsv	SWEET Ontology Representation Data Service Validation	http://sweetontology.net/reprDataServiceValidation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Validation		Acceptance		http://sweetontology.net/reprDataServiceValidation/$1			sorepdsv	False																														sweet		
sweet.repm	SWEET Ontology Representation Mathematics	http://sweetontology.net/reprMath/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics		Array		http://sweetontology.net/reprMath/$1			sorepm	False																														sweet		
sweet.repmf	SWEET Ontology Representation Mathematics Function	http://sweetontology.net/reprMathFunction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Function		Affine		http://sweetontology.net/reprMathFunction/$1			sorepmf	False																														sweet		
sweet.repmfo	SWEET Ontology Representation Mathematics Function Orthogonal	http://sweetontology.net/reprMathFunctionOrthogonal/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Function Orthogonal		Coefficient		http://sweetontology.net/reprMathFunctionOrthogonal/$1			sorepmfo	False																														sweet		
sweet.repmg	SWEET Ontology Representation Mathematics Graph	http://sweetontology.net/reprMathGraph/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Graph		Arc		http://sweetontology.net/reprMathGraph/$1			sorepmg	False																														sweet		
sweet.repmo	SWEET Ontology Representation Mathematics Operation	http://sweetontology.net/reprMathOperation/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Operation		AreaIntegral		http://sweetontology.net/reprMathOperation/$1			sorepmo	False																														sweet		
sweet.repmso	SWEET Ontology Representation Mathematics Solution	http://sweetontology.net/reprMathSolution/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Solution		AlgebraicSolution		http://sweetontology.net/reprMathSolution/$1			sorepmso	False																														sweet		
sweet.repmst	SWEET Ontology Representation Mathematics Statistics	http://sweetontology.net/reprMathStatistics/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Statistics		ANOVA		http://sweetontology.net/reprMathStatistics/$1			sorepmst	False																														sweet		
sweet.reps	SWEET Ontology Representation Space	http://sweetontology.net/reprSpace/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space		Space		http://sweetontology.net/reprSpace/$1			soreps	False																														sweet		
sweet.repsc	SWEET Ontology Representation Scientific Component	http://sweetontology.net/reprSciComponent/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Component		Component		http://sweetontology.net/reprSciComponent/$1			sorepsc	False																														sweet		
sweet.repscd	SWEET Ontology Representation Space Coordinate	http://sweetontology.net/reprSpaceCoordinate/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Coordinate		AngularCoordinate		http://sweetontology.net/reprSpaceCoordinate/$1			sorepscd	False																														sweet		
sweet.repsd	SWEET Ontology Representation Space Direction	http://sweetontology.net/reprSpaceDirection/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Direction		Counterclockwise		http://sweetontology.net/reprSpaceDirection/$1			sorepsd	False																														sweet		
sweet.repsf	SWEET Ontology Representation Scientific Function	http://sweetontology.net/reprSciFunction/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Function		AdiabaticInvariant		http://sweetontology.net/reprSciFunction/$1			sorepsf	False																														sweet		
sweet.repsg	SWEET Ontology Representation Space Geometry	http://sweetontology.net/reprSpaceGeometry/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry		Arc		http://sweetontology.net/reprSpaceGeometry/$1			sorepsg	False																														sweet		
sweet.repsg3	SWEET Ontology Representation Space Geometry 3D	http://sweetontology.net/reprSpaceGeometry3D/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry 3D		AirSpace		http://sweetontology.net/reprSpaceGeometry3D/$1			sorepsg3	False																														sweet		
sweet.repsl	SWEET Ontology Representation Scientific Law	http://sweetontology.net/reprSciLaw/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Law		BernoulliTheorem		http://sweetontology.net/reprSciLaw/$1			sorepsl	False																														sweet		
sweet.repsme	SWEET Ontology Representation Representation Scientific Methodology	http://sweetontology.net/reprSciMethodology/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Representation Scientific Methodology		AerialPhotography		http://sweetontology.net/reprSciMethodology/$1			sorepsme	False																														sweet		
sweet.repsmo	SWEET Ontology Representation Scientific Model	http://sweetontology.net/reprSciModel/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Model		BoussinesqApproximation		http://sweetontology.net/reprSciModel/$1			sorepsmo	False																														sweet		
sweet.repsp	SWEET Ontology Representation Science Provenance	http://sweetontology.net/reprSciProvenance/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Science Provenance		Agent		http://sweetontology.net/reprSciProvenance/$1			sorepsp	False																														sweet		
sweet.repsrs	SWEET Ontology Representation Space Reference System	http://sweetontology.net/reprSpaceReferenceSystem/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Reference System		HorizontalCoordinateSystem		http://sweetontology.net/reprSpaceReferenceSystem/$1			sorepsrs	False																														sweet		
sweet.repsu	SWEET Ontology Representation Scientific Units	http://sweetontology.net/reprSciUnits/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Units		BaseUnit		http://sweetontology.net/reprSciUnits/$1			sorepsu	False																														sweet		
sweet.rept	SWEET Ontology Representation Time	http://sweetontology.net/reprTime/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time		Duration		http://sweetontology.net/reprTime/$1			sorept	False																														sweet		
sweet.reptd	SWEET Ontology Representation Time Day	http://sweetontology.net/reprTimeDay/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Day		Dawn		http://sweetontology.net/reprTimeDay/$1			soreptd	False																														sweet		
sweet.repts	SWEET Ontology Representation Time Season	http://sweetontology.net/reprTimeSeason/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Season		ColdestMonth		http://sweetontology.net/reprTimeSeason/$1			sorepts	False																														sweet		
sweet.st	SWEET Ontology State	http://sweetontology.net/state/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State		BinaryState		http://sweetontology.net/state/$1			sost	False																														sweet		
sweet.stb	SWEET Ontology State Biological	http://sweetontology.net/stateBiological/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Biological		BiologicalState		http://sweetontology.net/stateBiological/$1			sostb	False																														sweet		
sweet.stc	SWEET Ontology State Chemical	http://sweetontology.net/stateChemical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Chemical		BiochemicalState		http://sweetontology.net/stateChemical/$1			sostc	False																														sweet		
sweet.stdp	SWEET Ontology State Data Processing	http://sweetontology.net/stateDataProcessing/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Data Processing		Archived		http://sweetontology.net/stateDataProcessing/$1			sostdp	False																														sweet		
sweet.stef	SWEET Ontology State Energy Flux	http://sweetontology.net/stateEnergyFlux/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Energy Flux		AClass		http://sweetontology.net/stateEnergyFlux/$1			sostef	False																														sweet		
sweet.stf	SWEET Ontology State Fluid	http://sweetontology.net/stateFluid/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Fluid		FluidEquilibriumState		http://sweetontology.net/stateFluid/$1			sostf	False																														sweet		
sweet.sto	SWEET Ontology State Ordinal	http://sweetontology.net/stateOrdinal/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Ordinal		Acute		http://sweetontology.net/stateOrdinal/$1			sosto	False																														sweet		
sweet.stp	SWEET Ontology State Physical	http://sweetontology.net/statePhysical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Physical		MoistureState		http://sweetontology.net/statePhysical/$1			sostp	False																														sweet		
sweet.strb	SWEET Ontology State Role Biological	http://sweetontology.net/stateRoleBiological/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Biological		Autotroph		http://sweetontology.net/stateRoleBiological/$1			sostrb	False																														sweet		
sweet.strc	SWEET Ontology State Role Chemical	http://sweetontology.net/stateRoleChemical/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Chemical		ChemicalRole		http://sweetontology.net/stateRoleChemical/$1			sostrc	False																														sweet		
sweet.stre	SWEET Ontology State Realm	http://sweetontology.net/stateRealm/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Realm		RealmConfiguration		http://sweetontology.net/stateRealm/$1			sostre	False																														sweet		
sweet.strg	SWEET Ontology State Role Geographic	http://sweetontology.net/stateRoleGeographic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Geographic		Barrier		http://sweetontology.net/stateRoleGeographic/$1			sostrg	False																														sweet		
sweet.stri	SWEET Ontology State Role Impact	http://sweetontology.net/stateRoleImpact/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Impact		Catastrophic		http://sweetontology.net/stateRoleImpact/$1			sostri	False																														sweet		
sweet.stro	SWEET Ontology State Role	http://sweetontology.net/stateRole/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role		ConductionRole		http://sweetontology.net/stateRole/$1			sostro	False																														sweet		
sweet.strr	SWEET Ontology State Role Representative	http://sweetontology.net/stateRoleRepresentative/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Representative		RepresentativeRole		http://sweetontology.net/stateRoleRepresentative/$1			sostrr	False																														sweet		
sweet.strt	SWEET Ontology State Role Trust	http://sweetontology.net/stateRoleTrust/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Trust		Accurate		http://sweetontology.net/stateRoleTrust/$1			sostrt	False																														sweet		
sweet.stsb	SWEET Ontology State Spectral Band	http://sweetontology.net/stateSpectralBand/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Band		BandLimited		http://sweetontology.net/stateSpectralBand/$1			sostsb	False																														sweet		
sweet.stsc	SWEET Ontology State Space Configuration	http://sweetontology.net/stateSpaceConfiguration/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Configuration		Antumbra		http://sweetontology.net/stateSpaceConfiguration/$1			sostsc	False																														sweet		
sweet.stsl	SWEET Ontology State Spectral Line	http://sweetontology.net/stateSpectralLine/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Line		CaK		http://sweetontology.net/stateSpectralLine/$1			sostsl	False																														sweet		
sweet.stso	SWEET Ontology State Solid	http://sweetontology.net/stateSolid/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Solid		SolidState		http://sweetontology.net/stateSolid/$1			sostso	False																														sweet		
sweet.stsp	SWEET Ontology State Space	http://sweetontology.net/stateSpace/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space		Big		http://sweetontology.net/stateSpace/$1			sostsp	False																														sweet		
sweet.stss	SWEET Ontology State Space Scale	http://sweetontology.net/stateSpaceScale/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Scale		Continental		http://sweetontology.net/stateSpaceScale/$1			sostss	False																														sweet		
sweet.stst	SWEET Ontology State Storm	http://sweetontology.net/stateStorm/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Storm		BeaufortScale		http://sweetontology.net/stateStorm/$1			sostst	False																														sweet		
sweet.stsy	SWEET Ontology State System	http://sweetontology.net/stateSystem/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State System		Coherent		http://sweetontology.net/stateSystem/$1			sostsy	False																														sweet		
sweet.sttc	SWEET Ontology State Time Cycle	http://sweetontology.net/stateTimeCycle/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Cycle		ElNino		http://sweetontology.net/stateTimeCycle/$1			sosttc	False																														sweet		
sweet.sttf	SWEET Ontology State Time Frequency	http://sweetontology.net/stateTimeFrequency/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Frequency		Annual		http://sweetontology.net/stateTimeFrequency/$1			sosttf	False																														sweet		
sweet.sttg	SWEET Ontology State Time Geologic	http://sweetontology.net/stateTimeGeologic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Geologic		0MYA		http://sweetontology.net/stateTimeGeologic/$1			sosttg	False																														sweet		
sweet.stth	SWEET Ontology State Thermodynamic	http://sweetontology.net/stateThermodynamic/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Thermodynamic		ThermodynamicState		http://sweetontology.net/stateThermodynamic/$1			sostth	False																														sweet		
sweet.stti	SWEET Ontology State Time	http://sweetontology.net/stateTime/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time		Age		http://sweetontology.net/stateTime/$1			sostti	False																														sweet		
sweet.stv	SWEET Ontology State Visibility	http://sweetontology.net/stateVisibility/	The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Visibility		Clear		http://sweetontology.net/stateVisibility/$1			sostv	False																														sweet		
swh	Software Heritage	https://archive.softwareheritage.org	Software Heritage is the universal archive of software source code.	^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\S+)*$	1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d		https://archive.softwareheritage.org/browse/swh:$1				False				SWH										swh	swh																	
swiss-model	SWISS-MODEL Repository	https://swissmodel.expasy.org	The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.	^\w+$	P23298	torsten.schwede@unibas.ch	https://swissmodel.expasy.org/repository/uniprot/$1				False				SWISS-MODEL										swiss-model	swiss-model						swissmodel	r3d100010605									uniprot	
swissregulon	SwissRegulon	http://swissregulon.unibas.ch	A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.	^[A-Za-z0-9]+$	AHR	erik.vannimwegen@unibas.ch	http://swissregulon.unibas.ch/query/$1				False				SWISSREGULON								nbdc02225		swissregulon	swissregulon																	
swo	Software ontology	https://github.com/allysonlister/swo	The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.	^\d{7,8}$	0000144	allyson.lister@oerc.ox.ac.uk	http://purl.obolibrary.org/obo/SWO_$1	https://raw.githubusercontent.com/allysonlister/swo/master/swo.owl			False	SWO			SWO	SWO											swo	swo	SWO			swo			swo				Q113014439				
swrl	A Semantic Web Rule Language Combining OWL and RuleML	https://www.w3.org/2003/11/swrl#	SWRL enables Horn-like rules to be combined with an OWL knowledge base.		Variable		http://www.w3.org/2003/11/swrl#$1				False													swrl																			
symp	Symptom Ontology	https://github.com/DiseaseOntology/SymptomOntology	The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.	^\d{7}$	0019171	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/SYMP_$1			SYMP	False	SYMP			SYMP	SYMP											symp	symp	SYMP			symptom						P8656	Q81661810				
synapse	Synapse Data Repository	https://sagebionetworks.org	Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.	^[0-9]*\.*[0-9]*$	41455251.1	kevin.boske@sagebase.org	https://www.synapse.org/Synapse:syn$1			syn	False												nbdc02162		synapse								r3d100011894						Q56328412				
synbip.bts	Synthetic Binding Proteins Binding Target	http://synbip.idrblab.net	Identifiers for the binding targets of synthetic binding proteins (SBP), describing the specific molecules or complexes that SBPs interact with for their intended applications	^st\d+$	st00576	lifengcheng@zju.edu.cn	http://synbip.idrblab.net/data/bts/details/$1				False																																
synbip.epitope	Synthetic Binding Protein Epitope	http://synbip.idrblab.net	Identifiers for synthetic binding protein-target complexes, detailing their components, 3D structures and docking statistics	^mt\d+$	mt002305	lifengcheng@zju.edu.cn	http://synbip.idrblab.net/data/sbp-target-complex/details/$1				False																																
synbip.pss	Synthetic Binding Protein Protein Scaffold	http://synbip.idrblab.net	Identifiers for the protein scaffolds of synthetic binding proteins (SBP), detailing their structural frameworks and roles in facilitating SBP function.	^ps\d+$	ps048	lifengcheng@zju.edu.cn	http://synbip.idrblab.net/data/scaffold/details/$1				False																																
synbip.sbp	Synthetic Binding Protein	http://synbip.idrblab.net	Identifiers for synthetic binding proteins, providing detailed information on their sequences, structures, targets, and functional properties for research, diagnostic, and therapeutic applications.	^sbp\d+$	sbp000002	lifengcheng@zju.edu.cn	http://synbip.idrblab.net/data/sbp/details/$1				False																																
syoid	Gemina Symptom Ontology										True																																
t3db	Toxin and Toxin Target Database	http://www.t3db.org/	Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.	^T3D\d+$	T3D0001	david.wishart@ualberta.ca	http://www.t3db.org/toxins/$1				False				T3DB						2662				t3db	t3db				326		t3db	r3d100012189										
t4fs	terms4FAIRskills	https://github.com/terms4fairskills/FAIRterminology	A terminology for the skills necessary to make data FAIR and to keep it FAIR.	^\d{7}$	0000127	allyson.lister@oerc.ox.ac.uk	http://purl.obolibrary.org/obo/T4FS_$1				False	T4FS				T4FS											t4fs	t4fs	T4FS						t4fs								
tads	Tick Anatomy Ontology	https://www.vectorbase.org/ontology-browser	The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i>	^\d{7}$	0000547	dsonensh@odu.edu	http://purl.obolibrary.org/obo/TADS_$1		http://purl.obolibrary.org/obo/tads.obo		True	TADS			TADS	TADS											tads	tads	TADS														
tahe	Terminology of Anatomy of Human Embryology					pierre.sprumont@unifr.ch	http://purl.obolibrary.org/obo/TAHE_$1				True				TAHE												tahe												Q114677914				
tahh	Terminology of Anatomy of Human Histology					pierre.sprumont@unifr.ch	http://purl.obolibrary.org/obo/TAHH_$1				True				TAHH												tahh												Q114677915				
tair.gene	TAIR Gene	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.	^\d{7}$	2200934	aisling.doyle9@gmail.com	http://arabidopsis.org/servlets/TairObject?accession=Gene:$1				False				TAIR.GENE										tair.gene	tair.gene						tair.gene											
tair.locus	The Arabidopsis Information Resource	http://arabidopsis.org/	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.	^\d+$	2200950	aisling.doyle9@gmail.com	https://www.arabidopsis.org/locus?accession=$1				False				TAIR.LOCUS										tair.locus	tair.locus						tair.locus											
tair.protein	TAIR Protein	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept	^\d{10}$	1009107926	aisling.doyle9@gmail.com	https://www.arabidopsis.org/protein?key=$1				False				TAIR.PROTEIN										tair.protein	tair.protein						tair.protein											
tao	Teleost Anatomy Ontology	http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology	Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa	^\d{7}$	0000086	wasila.dahdul@usd.edu	http://purl.obolibrary.org/obo/TAO_$1			TAO_RETIRED	True	TAO			TAO	TAO											tao	tao				tao											
tarbase	TarBase	http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index	TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.	^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)?$	hsa-let-7a-2-3p		http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1				False				TARBASE								nbdc02102		tarbase	tarbase				283													
taxrank	Taxonomic rank vocabulary	https://github.com/phenoscape/taxrank	A vocabulary of taxonomic ranks (species, family, phylum, etc)	^\d{7}$	0000001	balhoff@renci.org	http://purl.obolibrary.org/obo/TAXRANK_$1				False	TAXRANK	TAXRANK		TAXRANK	TAXRANK											taxrank	taxrank	TAXRANK			taxrank							Q81661813				
tcb	Tick Cell Biobank	https://www.pirbright.ac.uk/tick-cell-lines-views-page	Cell line collections	^\d+$	2966		https://www.pirbright.ac.uk/node/$1				False						TCB																										
tccd	The Cell Cycle DB	http://www.itb.cnr.it/cellcycle	Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle		TP53		http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1				True																					tccd											
tcdb	Transporter Classification Database	https://www.tcdb.org	The database details a comprehensive  IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.	^\d+(\.[A-Z])?(\.\d+)?(\.\d+)?(\.\d+)?$	5.A.1.1.1	msaier@ucsd.edu	http://www.tcdb.org/search/result.php?tc=$1			TC	False				TCDB						2756				tcdb	tcdb				104		tcdb					DB-0135	P7260					
tctr	Thai Clinical Trials Registry	https://www.thaiclinicaltrials.org	The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)	^TCTR\d+$	TCTR20230429001		https://www.thaiclinicaltrials.org/show/$1				False																																
tdwg.abcd	Access to Biological Collection Data Schema	https://www.tdwg.org/standards/abcd/	The base ontology of the ABCD Standard.		Accession						False																								abcd								
tdwg.format	format controlled vocabulary	http://rs.tdwg.org/format.htm	Controlled vocabulary for the Dublin Core term format		e001		http://rs.tdwg.org/format/$1				False																								format								
tdwg.taxonrank	TDWG Taxon Rank LSID Ontology	https://github.com/tdwg/ontology	Ontology describing a controlled vocabulary for taxon ranks.		InfragenericTaxon	rhyam@rbge.org.uk	http://rs.tdwg.org/ontology/voc/TaxonRank#$1	https://tdwg.github.io/ontology/ontology/voc/TaxonRank.rdf			False																																
tdwg.vms	Vocabulary Maintenance Standard	https://www.tdwg.org/standards/vms/	The TDWG Vocabulary Maintenance Standard consists of a single document: the Vocabulary Maintenance Specification.				http://www.tdwg.org/standards/642$1				False																								vms								
te	Terminologia Embryologica	https://ifaa.unifr.ch/	The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]		E5.11.2.0.0.0.4						False																											P1693					
tfclass	Classification of Transcription Factors in Mammalia	http://tfclass.bioinf.med.uni-goettingen.de	TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..		2.1.1	edgar.wingender@edgar-wingender.de	http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1				False																			666													
tfsco	Thin-film Solar Cells Ontology	https://github.com/nomad-hzb/autoperosol	Domain ontology for thin-film solar cells and related tandem solar cells. Contains relevant terms and concepts from BFO, IAO, UO, PATO, OBI, CHMO.		00000001		https://purl.archive.org/tfsco/TFSCO_$1				False																								tfsco								
tgd	Tetrahymena Genome Database	http://ciliate.org/index.php/	The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.	^TTHERM\_\d+$	TTHERM_00648910		http://ciliate.org/index.php/feature/details/$1				False				TGD										tgd	tgd						tgd											
tgma	Mosquito gross anatomy ontology	https://www.vectorbase.org/ontology-browser	A structured controlled vocabulary of the anatomy of mosquitoes.	^\d{7}$	0000984	topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/TGMA_$1		http://purl.obolibrary.org/obo/tgma.obo		True	TGMA			TGMA	TGMA											tgma	tgma	TGMA			tgma											
th	Terminologia Histologica	https://ifaa.unifr.ch/	The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]	^H\d\.\d{2}\.\d{2}\.\d\.\d{5}$	H3.03.00.0.00007						False																											P1694					
theiler	Theiler Stage	https://embryology.med.unsw.edu.au/embryology/index.php?title=Mouse_Stages	Theiler stages (TS) define mouse development by a set of morphological criteria ([Theiler, 1989](https://doi.org/10.1007/978-3-642-88418-4)). This staging scheme is used because embryos at the same gestational age can have developed at different rates and therefore exhibit different morphological characteristics. Theiler stages may in some cases correspond to a single gestation age, but more often cover a range of ages. (from [https://www.informatics.jax.org/glossary/theiler](https://www.informatics.jax.org/glossary/theiler))	^\d+[a-d]?$	23	Terry.Hayamizu@jax.org	https://www.emouseatlas.org/emap/ema/DAOAnatomyJSP/anatomy.html?stage=TS$1			thielerstage	False																																
thermofisher	Thermo Fisher Scientific	https://www.thermofisher.com	ThermoFisher is a life sciences supply vendor.	^\w+$	OSR00185W		https://www.thermofisher.com/antibody/product/$1				False																																
tib.bk	Basisklassifikation	http://bartoc.org/en/node/18785	The (Dutch) Basic Classification  (nl Nederlandse basisclassificatie), BK or NBC  is a hierarchical classification system developed by Dutch libraries specifically for scientific works. The classification system was introduced at the end of the 1980s under the direction of the Royal Library of the Netherlands and has been in use since 1990. Since then it has been continually revised. The BK is mainly used in the Netherlands and in the Common Library Network (GBV).		0		http://uri.gbv.de/terminology/bk/$1				False																								bk								
tib.bo	Base Ontology	https://git.onem2m.org/MAS/BaseOntology	This file contains the Base Ontology of oneM2M as specified in TS-0012		AreaNetwork		https://git.onem2m.org/MAS/BaseOntology/raw/master/base_ontology.owl#$1				False																								bo								
tib.cgo	Common Greenhouse Ontology	https://gitlab.com/ddings/common-greenhouse-ontology	This ontology describes concepts related to greenhouses. It mainly describes Dutch greenhouses, but can also be applied to greenhouses outside of The Netherlands. The ontology describes multiple aspects of the domain of greenhouses.		AbioticStressTrait		https://www.tno.nl/agrifood/ontology/common-greenhouse-ontology#$1				False																								cgo								
tib.dot	Damage Topology Ontology	https://alhakam.github.io/dot	The Damage Topology Ontology (DOT) allows the definition of damage representations and their relations with other damages and affected construction components. The ontology supports a generic damage modeling approach and therefore could be applied for any type of degradation as well as for any construction type (e.g. buildings or bridges). Damage representations can be modeled either as damaged areas (dot:DamageArea) or elementary damage elements (dot:DamageElement). Thereby, instances of dot:DamageElement should be aggregated in a dot:DamageArea, however significant damages e.g. large cracks could be modelled as dot:DamageElement without dot:DamageArea. For grouping multiple coherent damages, a damage pattern could be defined by using dot:DamagePattern as third type for damage representation. Besides the topological damage classes, damage can also be categorized acording to a certain damage type using subclasses of dot:ClassifiedDamage as defined in extensions of DOT. A division between structural and non-structural damage is made by using the dot:StructuralDamage or dot:Defect classes. In addition to the topology, damage documentation that is commonly created during inspections and damage assessment can be linked to the damages as well as to the damaged components.		Causation		https://w3id.org/dot#$1				False																								dot								
tib.dr	Digital Reference	https://github.com/tibonto/dr	Holistic Ontology for semiconductor manufacturing and development, products and systems containing semiconductors and connected supply chains.		Application		http://www.w3id.org/ecsel-dr-SO#$1				False																								dr								
tib.fto	Modular Ontology Modeling for Food Supply Chains	https://github.com/Data-Semantics-Laboratory/Modular-Ontology-Modeling-for-Food-Supply-Chains	Modular Ontology Modeling for Food Supply Chains.		Agent		http://dase.cs.ksu.edu/ontology/food-traceability#$1				False																								fto								
tib.gpo	General Process Ontology	https://github.com/General-Process-Ontology/ontology	Ontology to model processes		01cd2578_8730_4ac9_a555_9112728ea939		https://gpo.ontology.link/GPO_$1				False																								gpo								
tib.hpont	Heat Pump Ontology	https://react2020.github.io/REACT-ONTOLOGY/HPOnt/index-en.html	The Heat Pump Ontology (HPOnt) aims to formalize and represent all the relevant information of Heat Pumps. The HPOnt has been developed as part of the REACT project which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 824395.		HeatPumpOperatingMode		https://w3id.org/hpont#$1				False																								hpont								
tib.ifc	Industrial Foundational Classes	https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL/index.html	OWL ontology for the IFC conceptual data schema and exchange file format for Building Information Model (BIM) data		IfcAbsorbedDoseMeasure		https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL#$1				False																								ifc								
tib.io	Information Objects Ontology	https://bimerr.iot.linkeddata.es/def/information-objects/	An ontology for the description of information objects.		InformationObject		http://bimerr.iot.linkeddata.es/def/information-objects#$1				False																								io								
tib.ioc	IOC: Internet of Construction Ontology	https://ip.pages.rwth-aachen.de/ioc/core/	The Internet of Construction Ontology (IoC) construction process ontology is intended to represent a comprehensive solution of how processes in the construction industry can be modelled. Due to the iterative nature of creating an ontology, the construction process ontology presented here can at best be considered a working state at the time of publication. Our approach emphasizes the simplest and most comprehensive mapping possible, which is only extended based on insights from practical use when otherwise compelling limitations in usability and applicability arise. Thus, the extension and refinement of the developed construction process ontology strongly depends on the integration of further areas of the construction value chain and the connection of further domain ontologies.		Actor		http://w3id.org/ioc#$1				False																								ioc								
tib.linsearch	Fachsystematik LinSearch	https://github.com/TIBHannover/annif_automated_indexing_at_tib	Fächer für die LinSearch-Fachzuordnung		arc		https://purl.org/linsearch/$1				False																								linsearch								
tib.lis	Industrial Data Ontology	https://rds.posccaesar.org/ontology/lis14/ont/core/	The Industrial Data Ontology is an upper ontology for industrial data, inspired by the ISO 15926-2 data model and Basic Formal Ontology.		Activity		http://rds.posccaesar.org/ontology/lis14/rdl/$1				False																								lis								
tib.mat	Material properties ontology	https://bimerr.iot.linkeddata.es/def/material-properties/	The material properties ontology provides the vocabulary to describe the composition of building elements.		Accesories		http://bimerr.iot.linkeddata.es/def/material-properties#$1				False																								mat								
tib.mdo	Materials Design Ontology - Full	https://liusemweb.github.io/mdo/full/1.0/index.html#namespaces	The Materials Design Ontology is designed to enable semantic query and integrated query over multiple databases. By generating mappings between MDO and the schemas of materials databases, we can create MDO-enabled query interfaces. The querying can occur, for instance, via MDO-based query expansion, MDO-based mediation or through MDO-enabled data warehouses.				https://w3id.org/mdo/$1				False																								mdo								
tib.mdv	Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary	https://data.nist.gov/od/id/67C783D4BA814C8EE05324570681708A1899	A version of the Materials Data Vocabulary structured as Simple Knowledge Organization System (SKOS). The XML was originally created by the TemaTres software. This vocabulary describes the applicability to material science of records in the NIST Materials Resource Registry (NMRR - https://materials.registry.nist.gov/). The NMRR allows for the registration of materials resources, bridging the gap between existing resources and the end users. The NMRR functions as a node in a federated system, making the registered information available for research to the materials community. This is being developed at the National Institute of Standards and Technology and is made available to solicit comments from the Material Science community. (An Excel version of the file is also included in the distributions for ease of use.) Please cite this resource as: Medina-Smith, Andrea; Becker, Chandler (2017), Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary , National Institute of Standards and Technology, https://doi.org/10.18434/T4/1435037		953		https://data.nist.gov/od/dm/nmrr/vocab/?tema=$1				False																								mdv								
tib.meth	Analytical methods for geochemistry	https://amds-ldeo.github.io/Vocabulary/geochemistry/html/GeochemAnalyticalMethod.html	This concept scheme contains skos concepts for analysis methods used to produce observation results with information about the physical properties, chemical or isotopic composition, crystallography, or molecular structure of material samples. Based on spreadsheet compilation of method vocabularies from Geo.X, GEOROC, PetDB and OSIRIS-REx. Definitions added and updated based on web research, and SKOS serialization by S.M. Richard. Note that although there are high-level method categories for 'Physical property measurements' and the 'Bioanalytical method', these are placeholders and only include a few examples that are relevant to analytical methods in geo- or cosmochemistry.		acceleratormassspectrometry		https://w3id.org/geochem/1.0/analyticalmethod/$1				False																								meth								
tib.mt	Mobility Theme	https://w3id.org/mobilitydcat-ap/mobility-theme	Controlled vocabulary for the classification of the theme for a mobility dataset.		accesibility-information-for-vehicles		https://w3id.org/mobilitydcat-ap/mobility-theme/$1				False																								mt								
tib.n0	The Audio Commons Ontology	http://www.audiocommons.org/ac-ontology/aco.html	"The Audio Commons Ontology has been created in the context of the European project [Audio Commons](https://www.audiocommons.org/), which were aimed at favouring sharing and reuse of audio content (both of musical and non-musical nature), specially using [Creative Commons](https://creativecommons.org/) licenses.

It is designed specifically to integrate access to multiple heterogeneously structured audio content providers. In particular the following ones have been considered in the project:
- [Freesound](https://freesound.org/), a collaborative database of Creative Commons Licensed sounds;
- [Jamendo](https://www.jamendo.com/), a music website for independent artists;
- [Europeana Sounds](https://www.eusounds.eu/), a European project collecting and sharing data from several archives of sounds and sound-related media;
- [Internet Archive](https://archive.org/), a non-profit library of millions of freely accessible media contents.

### The base model
<center> ![A diagram showing the entities Work, Expression, Manifestation, Item](./img/FRBR-Group-1-entities-and-basic-relations.svg.png) </center>
The Audio Commons ontology is based on [Functional Requirements for Bibliographic Records (FRBR)](https://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records), a bibliographic model designed for user tasks of retrieval and access in online library catalogues and bibliographic databases. FRBR distinguish the products of intellectual or artistic endeavor in four main classes: work, expression, manifestation, item. It is available as RDF vocabulary at https://vocab.org/frbr/core. For further information on FRBR, check the [standard](https://repository.ifla.org/handle/123456789/811).

Another important model related to audio is the [Music Ontology](http://musicontology.com/), which is also based on the FRBR model. Our ontology is more generic than the Music Ontology but is interoperable with it to support the specificities of music-related audio content.

The Audio Commons ontology works also in conjunction with
- [Dublin Core](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/) for basic metadata,
- [EBU Core](https://www.ebu.ch/metadata/ontologies/ebucore/) for technical properties of audio files,
- [SKOS](https://www.w3.org/TR/skos-primer/) to support taxonomic classifications,
- [Creative Commons Licensing schema](https://creativecommons.org/ns) to represent media licensing,
- [Event ontology](http://motools.sf.net/event/event.html) for the formalisation of events,
- [Audio Features Ontology](https://w3id.org/afo/onto/) for the characterisation of audio features.

### Ontology overview

![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Skeleton.png)

The figure above shows the most general classes and properties of the Audio Commons ontology and their relationship with classes of the FRBR and the Music Ontology:
- **`ac:AudioExpression`**, the specific intellectual or artistic form that a work takes each time it is _realised_, in the audio domain, e.g., the recording or synthesis of music or sounds;
- **`ac:AudioManifestation`**, the physical embodiment of an audio expression, e.g., a musical track, a sound, an album; 
- **`ac:AudioItem`**, a single exemplar of an audio manifestation, e.g., a copy of a CD or a specific media file.

The FRBR class Work, representing a distinct intellectual or artistic creation on a more conceptual level, has not been specialised in Audio Commons.

The Audio Commons ontology provides a generic schema for audio classification through the property **`ac:audioCategory`** that associates any audio expression, manifestation, or item to some generic **`ac:AudioCategory`**. These two terms can be specialised to provide spefic categorisations.

### Manifestations: audio clips and collections

![A diagram showing the main classes of the Audio Commons ontology](./img/AC-Ontology-Manifestation.png)

The figure above shows classes and properties related to audio manifestations. An instance of **`ac:AudioClip`**, a subclass of `ac:AudioManifestation`, is any audio segment that has been published in some form or uploaded for consumption, for example, a track in a music label's repository or a sound in an audio repository, library or archive.

The class **`ac:AudioCollection`**, another subclass of `ac:AudioManifestation`, is used to represent collections of audio clips. The class **`ac:AudioCollectionNode`** is used to represent single nodes of a collection, offering local information like the index in the collection and pointers to previous and next nodes. The separation between the collection node and its actual content (e.g., an `ac:AudioClip`) permits the same content to be shared in multiple collections.

The content of each node of a collection is not limited to an `ac:AudioClip`, but may contain any `ac:AudioManifestation`. Collections can thus contain other collections to support specific cases, e.g. a mapping to the Music Ontology model where an `mo:Release` can contain multiple `mo:Record`(s) that can in turn contain multiple `mo:Track`(s).
### Items: audio files
![A diagram showing ac:Item class and related class and properties](./img/AC-Ontology-Item.png)

An `ac:AudioItem` is a concrete exemplar of an audio manifestation. In our domain, the main exemplars are the actual audio files. 

The corresponding class **`ac:AudioFile`** is a subclass of `ac:AudioItem`. It is subclass of `ebu:MediaResource` too and the corresponging properties of EBU Core can be used to describe the file (e.g., `ebu:hasEncodingFormat`, `ebu:fileSize`).

### Expressions: audio signals
![A diagram showing ac:Expression class and related class and properties](./img/AC-Ontology-Expression.png)

While `ac:AudioFile` represents a concrete file encoded in a certain format, **`ac:DigitalSignal`** is the representation of the corresponding digital signal. `ac:DigitalSignal` is a subclass of `ac:MusicalExpression`. 

The data properties `ac:sampleRate`, `ac:bitsPerSample`, and `ac:channels`, associate a signal with its basic features specific to digital representations.

The property `ac:publicationOf` can be used to associate an `ac:AudioClip` with the corresponding digital signal. The property `ac:encodes` instead, associates an `ac:AudioFile` with the encoded digital signal.

### Events: recording/syntesis
![A diagram showing ac:SignalProduction class and related class and properties!](./img/AC-Ontology-SignalProduction.png)

The description of temporal events is crucial to formalise and document transitions in the workflow of audio production and publication. The class `event:Event` of the Event Ontology is thus specialised for specific actions that are interesting for the audio domain.

Using the `event:Event` class, details of an event such as its location in time and space, its factor and its products may be explicitly described. Moreover, events can be composed using the property `event:sub_event`, to build complex events.

The class `ac:SignalProduction` represents the act of producing a `ac:Signal`, which could be either an `ac:AnalogSignal` or a `ac:DigitalSignal`. This is complemented by **`ac:Recording`**, representing the process of recording a sound (`ac:Sound`) or the product of **`ac:Synthesis`**, in case of artificially generated sounds. 

### Events (continued): publication
![A diagram showing ac:Publication class and related class and properties!](./img/AC-Ontology-Publication.png)

The event **`ac:AudioPublication`** represents the public release of a piece of work, e.g., the release of a new album by a band.

### Usage Example
![A diagram showing an example of ontology usage!](./img/AC_Example-AudioClip.png)

The figure above shows an example of use of the Audio Commons ontology to represent a sound from the Freesound database. For simplicity only the classes `ac:AudioClip`, `ac:AudioFile`, and `ac:AudioCategory` are used in this case."		AnalogSignal		https://w3id.org/ac-ontology/aco#$1				False																								n0								
tib.ofm	Ontology for manufacturing and logistics	https://github.com/enegri/OFM	Ontology for manufacturing and logistics		Anthropomorphic_Robot		http://www.ontologies.com/Ontology3197.owl#$1				False																								ofm								
tib.re	Retail Energy Market of Great Britain	https://github.com/DataCreater/GBEnergy	An ontology of the Retail Energy Market of Great Britain created by Lidcast Data Limited.		Advanced_Meter		https://www.lidcast.co.uk/ontologies/RE#$1				False																								re								
tib.sto	Standards Ontology	https://i40-tools.github.io/I40KG/docs/index.html	An ontology to describe standards related to Industry 4.0 and Smart Manufacturing		AiiClassification		https://w3id.org/i40/sto#$1				False																								sto								
tib.ts	TIB Terminology Service	https://terminology.tib.eu	An instance of the EBI Lookup Service deployed by TIB		abcd	baum@zbmed.de	https://terminology.tib.eu/ts/ontologies/$1				False																																
tib.tso	TUBES system ontology	https://rwth-e3d.github.io/tso/index.html	The scope of the TUBES ontology is to explicitly define the topology of interconnected building service system and their relationship to the spatial structure. It has a strong alignment to other ontologies within the W3C community and aims to provide the means to link information at data level within the AEC industry.		AutomationSystem		https://w3id.org/tso#$1				False																								tso								
tigrfam	TIGR protein families	http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi	TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.	^TIGR\d+$	TIGR00010		https://www.ncbi.nlm.nih.gov/cdd?term=$1				False				TIGRFAM						1141				tigrfam	tigrfam						tigrfams											
time	Time Ontology in OWL	https://www.w3.org/TR/owl-time/	Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars.		DateTimeDescription	dr.shorthair@pm.me	http://www.w3.org/2006/time#$1				False	TIME		18311		TIME								time											time					time			
tkg	Tohoku University cell line catalog	http://www2.idac.tohoku.ac.jp/dep/ccr/	Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells.	^\d+$	0221		http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html				False						TKG																										
tngb	Telethon Network of Genetic Biobanks	https://biobanknetwork.telethon.it/	Cell line collections (Providers)	^\d+$	67035		https://biobanknetwork.telethon.it/Sample/View?sampleId=$1				False						TNGB																										
to	Plant Trait Ontology	http://browser.planteome.org/amigo	A controlled vocabulary to describe phenotypic traits in plants.	^\d{7}$	0000630	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/TO_$1				False	TO	TO		TO	PTO											to	to	TO			pto			to				Q81661818				
togoid	TogoID Ontology	https://togoid.dbcls.jp/ontology	TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)		AffyProbeset	ktym@dbcls.jp	https://togoid.dbcls.jp/#$1	https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl			False																																
togovar	TogoVar	https://grch38.togovar.org/	TogoVar (A comprehensive Japanese genetic variation database) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them.	^tgv[0-9]+$	tgv139393198		https://grch38.togovar.org/variant/$1				False												nbdc02359		togovar											Togovar							
tokue	TOKU-E Cell-culture Database	http://cell-lines.toku-e.com	Cell line databases/resources				http://cell-lines.toku-e.com/Cell-Lines_$1.html				True						TOKU-E																										
tol	Tree of Life Web Project	http://tolweb.org/tree/	"The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). 

Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things."	^\d+$	98034		http://tolweb.org/$1			tol.webproj	False			400	TOL										tol	tol												P5221	Q2300489				
topdb	Topology Data Bank of Transmembrane Proteins	http://topdb.enzim.hu/	The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.	^[A-Z0-9]+$	AP00378		http://topdb.enzim.hu/?m=show&id=$1				False				TOPDB						2789				topdb	topdb						topdb											
topfind	TopFind	https://topfind.clip.msl.ubc.ca	TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q9UKQ2	chris.overall@ubc.ca	http://clipserve.clip.ubc.ca/topfind/proteins/$1				False				TOPFIND										topfind	topfind							r3d100012721									uniprot	
toxoplasma	ToxoDB	http://toxodb.org/toxo/	ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	TGME49_053730		http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False				TOXOPLASMA										toxoplasma	toxoplasma																	
trans	Pathogen Transmission Ontology	https://github.com/DiseaseOntology/PathogenTransmissionOntology	The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.	^\d{7}$	0000024	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/TRANS_$1				False	TRANS			TRANS	TRANS											trans	trans	TRANS			pt							Q15304508				
transportdb	TransportDB	http://www.membranetransport.org	TransportDB is a relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequence are available.		MMP0523		http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$1				False																			105		transportdb											
transyt	Transport Systems Tracker	https://www.bio.di.uminho.pt/	The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes.	^T[A-Z]\d{7}$	TR0000001		https://transyt.bio.di.uminho.pt/reactions/$1				False														transyt																		
tred	Transcriptional Regulatory Element Database	http://rulai.cshl.edu/TRED	Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present.		21552		http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$1				True																			167		tred											
treebase	TreeBASE	http://treebase.org/	TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.	^TB[1,2]?:[A-Z][a-z]?\d+$	TB2:S1000	rutgeraldo@gmail.com	http://purl.org/phylo/treebase/phylows/study/$1?format=html				True				TREEBASE								nbdc01882		treebase	treebase						treebase	r3d100010170										
treefam	TreeFam	http://www.treefam.org/	TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.	^\w{1,2}\d+$	TF101014	Fab.Schreiber@gmail.com	http://www.treefam.org/family/$1				False				TREEFAM								nbdc01596		treefam	treefam						treefam					DB-0185						
treehub	TreeHub	https://www.plantplus.cn/treehub	TreeHub is a taxonomical database for trees. TreeHub contains extracted phylogenetic data and integrates relevant species information for each identifier.	^T\d{8}$	T00232742	wuhui@ibcas.ac.cn	https://www.plantplus.cn/treehub/tree/$1				False																																
tribain	Tribology Ontology for Artificial Intelligence	https://github.com/snow0815/tribAIn	The tribAIn1 ontology aims to formalize knowledge gained from tribological experiments for reuse, comparison and documentation. Therefore, the tribAin ontology provides concepts for the specification of methodological background knowledge of experimental design, the documentation of the experimental setup and the representation of different kinds of results (e.g. measurements series, analysis, interpretation in natural-language). Using the EXPO2 (ontology of scientific experiments) as basis, gives tribAIn a generic background about scientific experimental design, methodology and results representation.		100Cr6		http://ktmfk.de/ontology/tribAIn/$1				False																								tai								
tricdb	tricdb	http://www.biomeddb.org/	Tri©DB is a newly developed integrated platform functioning as a knowledge base and reporting system for cancer precision medicine. This platform harmonizes and mines cancer-related data from various aspects, presenting them on a centralized platform with enhanced accessibility, rich annotations, and robust analysis capabilities. The development of Tri©DB is aimed at meeting the needs of a broad range of researchers, thereby propelling both foundational and translational research in cancer precision medicine.	^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$	1eec8393-e598-41ed-9d8b-6d5b0db94470		http://biomeddb.org/Disease/Details?DISEASEID=$1				False														tricdb																		
trichdb	TrichDB	http://trichdb.org/trichdb/	TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	TVAG_386080	oharb@pcbi.upenn.edu	http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False				TRICHDB								nbdc01785		trichdb	trichdb							r3d100012461										
tritrypdb	TriTrypDB	http://tritrypdb.org/tritrypdb/	TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+(\.)?\w+(\.)?\w+$	Tb927.8.620	oharb@pcbi.upenn.edu	http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False				TRITRYPDB								nbdc01786		tritrypdb	tritrypdb							r3d100011479										
trnadbce	tRNA Gene Database	http://trna.nagahama-i-bio.ac.jp	"The tRNA Gene DataBase Curated by Experts ""tRNADB-CE"" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones."		265912		http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1				False												nbdc00720									trnadbce											
tsc	Tetrahymena Stock Center	https://tetrahymena.vet.cornell.edu/	Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. [from RRID]	^SD\d+$	SD00043		https://tetrahymena.vet.cornell.edu/display.php?stockid=$1				False																							TSC									
tsrnadisease	tsRNADisease	http://compgenelab.info/tsRNADisease	Identifiers correspond to curated associations between diseases and tRNA-derived small RNAs (tsRNAs) in the tsRNADisease database.	^TRD\d{5}$	TRD00001	zhenyang@fudan.edu.cn	http://118.178.132.53/tsRNADisease/detail.php?entry_ID=$1				False																																
ttd.drug	TTD Drug	https://db.idrblab.net/ttd	The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.	^\w+$	D0N5OV		https://db.idrblab.net/ttd/data/drug/details/$1				False				TTD.DRUG						2653				ttd.drug	ttd.drug																	
ttd.target	TTD Target	https://db.idrblab.net/ttd	The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.	^t\d+$	t59328		https://db.idrblab.net/ttd/data/target/details/$1				False				TTD.TARGET						2654				ttd.target	ttd.target																	
tto	Teleost taxonomy ontology	https://github.com/phenoscape/teleost-taxonomy-ontology	An ontology covering the taxonomy of teleosts (bony fish)	^\d+$	1058367	balhoff@renci.org	http://purl.obolibrary.org/obo/TTO_$1				False	TTO			TTO	TTO											tto	tto	TTO			tto							Q81661821				
txpo	Toxic Process Ontology	https://toxpilot.nibiohn.go.jp/	"Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.

The TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.

In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"	^\d{7}$	0002066	yuki.yamagata@riken.jp	http://purl.obolibrary.org/obo/TXPO_$1				False	TXPO				TXPO											txpo	txpo	TXPO										Q113014440				
uat	Unified Astronomy Thesaurus	https://astrothesaurus.org	The Unified Astronomy Thesaurus (UAT) is an open, interoperable and community-supported thesaurus being developed to unify the existing divergent and isolated Astronomy & Astrophysics thesauri into a single high-quality, freely-available open-source thesaurus which will be of immediate value to both research and research support, and provide a mechanism for reviewing, discussing and evaluating the continuous evolution of terminology in these fields.		0		http://astrothesaurus.org/uat/$1				False			820																					uat								
uberon	Uber Anatomy Ontology	http://uberon.org	Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.	^\d+$	2005080	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/UBERON_$1		http://purl.obolibrary.org/obo/uberon/basic.obo	UBERON|Uber-anatomy ontology|Uberon	False	UBERON			UBERON	UBERON	UBERON								uberon	uberon	uberon	uberon	UBERON						uberon	Uberon		P1554	Q7876491				
uberon.issue	UBERON Issue Tracker	https://github.com/obophenotype/uberon/issues	An issue on the UBERON GitHub Issue tracker	^\d+$	530		https://github.com/obophenotype/uberon/issues/$1				False																																
ubio.namebank	uBio NameBank	http://www.ubio.org	"NameBank is a ""biological name server"" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."	^\d+$	2555646		http://www.ubio.org/browser/details.php?namebankID=$1				True				UBIO.NAMEBANK										ubio.namebank	ubio.namebank																	
ubprop	Uberon Property									UBPROP|UBREL	True																																
ucas	UK Universities and Colleges Admissions Service	https://www.ucas.com	An identifier for institutions in the United Kingdom, used in GRID and ROR.	^\w\d+$	N21						False																																
ucsc	UCSC Genome Browser	https://genome.ucsc.edu/	The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.		uc001rvw.5	max@soe.ucsc.edu	ftp://hgdownload.cse.ucsc.edu/goldenPath/$1				False				UCSC																						DB-0139	P2576					
ucum	Unified Code for Units of Measure	https://ucum.org	Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business.		aBq	dr.shorthair@pm.me	https://units-of-measurement.org/$1				False			1895								2.16.840.1.113883.6.8		ucum															Q2494286				
udsaes.fmi	Functional Mock-up Interface Ontology	https://github.com/UdSAES/fmi2rdf	An ontology transcription of definitions in the Functional Mock-up Interface (FMI) standard document from https://fmi-standard.org/ that enables representing Functional Mock-up Units (FMUs) in RDF		FMU		https://purl.org/fmi-ontology#$1				False																								fmi								
udsaes.sms	SMS-Ontology	https://github.com/UdSAES/sms-ontology	Ontology for representing systems, models and simulations in RDF.		CanBeApproximated		https://purl.org/sms-ontology#$1				False																								sms								
ukprn	UK Provider Reference Number	https://www.ukrlp.co.uk	identifier for an educational organization issued by the UK Register of Learning Providers	^[1-9]\d*$	10007835		https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=$1&pv_status=VERIFIED&pv_vis_code=L			ukprns	False																											P4971					
umbbd.compound	UM-BBD compound	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.	^c\d+$	c0001		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1			UM-BBD_compID	False				UMBBD.COMPOUND										umbbd.compound	umbbd.compound												P8121					
umbbd.enzyme	EAWAG Biocatalysis/Biodegradation Database enzyme	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.	^e\d+$	e0333		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1			UM-BBD_enzymeID	False				UMBBD.ENZYME										umbbd.enzyme	umbbd.enzyme																	
umbbd.pathway	EAWAG Biocatalysis/Biodegradation Database pathway	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.	^\w+$	ala		http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1			UM-BBD_pathwayID	False				UMBBD.PATHWAY										umbbd.pathway	umbbd.pathway																	
umbbd.reaction	EAWAG Biocatalysis/Biodegradation Database reaction	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.	^r\d+$	r0001		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1			UM-BBD_reactionID	False				UMBBD.REACTION										umbbd.reaction	umbbd.reaction													Q24188985				
umbbd.rule	EAWAG Biocatalysis/Biodegradation Database rule	http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.	^bt\d+$	bt0001		http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1			UM-BBD_ruleID	False				UMBBD.RULE										umbbd.rule	umbbd.rule																	
uminctr	University hospital Medical Information Network Clinical Trial Registry	https://www.umin.ac.jp/ctr/index.htm	An additional Japanese clinical trial registry	^UMIN\d+$|^C\d+$	UMIN000049383						False												nbdc01470																				
umls	Unified Medical Language System Concept Unique Identifier	https://www.nlm.nih.gov/research/umls	The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.	^C\d+$	C2584994	olivier@nlm.nih.gov	https://uts.nlm.nih.gov/uts/umls/concept/$1			UMLS|UMLS CUI|UMLS_CUI|umls.cui	False			20052	UMLS						1181	2.16.840.1.113883.6.86			umls	umls												P2892	Q455338				
umls.aui	Unified Medical Language System Atomic Unique Identifier	https://www.nlm.nih.gov/research/umls	An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus.	^A\d+$	A0118748					UMLS_ICD9CM_2005_AUI	False																																
unesco.thesaurus	UNESCO Thesaurus	http://vocabularies.unesco.org/thesaurus	The UNESCO Thesaurus is a controlled and structured list of terms used in subject analysis and retrieval of documents and publications in the fields of education, culture, natural sciences, social and human sciences, communication and information. Continuously enriched and updated, its multidisciplinary terminology reflects the evolution of UNESCO's programmes and activities. [from homepage]	^\d+$	585		http://vocabularies.unesco.org/thesaurus/concept$1				False																																
unicarbdb	UniCarb-DB	https://unicarb-db.expasy.org	UniCarb-DB stores structural and mass spectrometry (MS) glycomic data, and has now grown to be one of the largest experimental glycomic MS databases. Identifiers correspond to individual glycan structures and corresponding MS spectra.	^\d+$	91	niclas.karlsson@medkem.gu.se	https://unicarb-db.expasy.org/msData/$1				False																																
unichem	UniChem compound	https://chembl.gitbook.io/unichem/downloads	identifier of a compound in the UniChem database	^\d+$	161671		https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=$1				False																											P11089					
unigene	UniGene	http://www.ncbi.nlm.nih.gov/unigene	A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.	^\d+$	4900		http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1				True				UNIGENE								nbdc00220		unigene	unigene						unigene	r3d100010774										
unii	Unique Ingredient Identifier	https://precision.fda.gov/uniisearch	The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.	^[A-Z0-9]+$	3G6A5W338E		https://precision.fda.gov/uniisearch/srs/unii/$1				False				UNII			000563							unii	unii												P652					
unimod	Unimod protein modification database for mass spectrometry	http://www.unimod.org/	Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).	^\d+$	1200	jcottrell@matrixscience.com	http://www.unimod.org/modifications_view.php?editid1=$1				False				UNIMOD						3757				unimod	unimod		unimod															
uniparc	UniProt Archive	http://www.uniprot.org/uniparc/	The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.	^UPI[A-F0-9]{10}$	UPI000000000A	agb@ebi.ac.uk	https://www.uniprot.org/uniparc/$1				False				UNIPARC						2392				uniparc	uniparc						uniparc	r3d100011519										
unipathway.compound	UniPathway Compound	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.	^UPC\d{5}$	UPC04349		http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1				False				UNIPATHWAY.COMPOUND										unipathway.compound	unipathway.compound																	
unipathway.reaction	UniPathway Reaction	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.	^UCR\d{5}$	UCR00226		http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1				False				UNIPATHWAY.REACTION										unipathway.reaction	unipathway.reaction																	
uniprot	UniProt Protein	http://www.uniprot.org	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.	^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?(-\d+)?(#PRO_\d+)?$	P0DP23	agb@ebi.ac.uk	http://purl.uniprot.org/uniprot/$1	https://w3id.org/biopragmatics/resources/uniprot/uniprot.owl.gz	https://w3id.org/biopragmatics/resources/uniprot/uniprot.obo.gz	SwissProt|UP|UniProt|UniProtKB|Uniprot ID|uniprot/swiss-prot	False	UP			UniProtKB	UNIPROT	UniProtKB				3021		nbdc00221		uniprot	uniprot						uniprot	r3d100011521			Uniprot		P352					
uniprot.arba	Association-Rule-Based Annotator	https://www.uniprot.org/arba	Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system.	^ARBA\d+$	ARBA00000001	agb@ebi.ac.uk	https://www.uniprot.org/arba/$1			arba	False																																
uniprot.chain	UniProt Chain	https://www.uniprot.org	This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.	^PRO_[0-9]{10}$	PRO_0000016681	agb@ebi.ac.uk	http://purl.uniprot.org/annotation/$1			UPPRO	False														uniprot.chain																		
uniprot.core	Uniprot Core Ontology	http://purl.uniprot.org/core/	Properties and classes used for protein annotation		certain	agb@ebi.ac.uk	http://purl.uniprot.org/core/$1	https://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/core.owl			False													uniprot				uniprotrdfs															
uniprot.disease	UniProt Diseases	https://www.uniprot.org/diseases/	The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary.	^DI-\d{5}$	DI-04240	agb@ebi.ac.uk	https://www.uniprot.org/diseases/$1		https://rest.uniprot.org/diseases/stream?compressed=false&format=obo&query=%28%2A%29	DI|SP_DI	False																											P11430					
uniprot.isoform	UniProt Isoform	http://www.uniprot.org/	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$	Q5BJF6-3	agb@ebi.ac.uk	http://purl.uniprot.org/isoforms/$1			UPISO	False				UNIPROT.ISOFORM										uniprot.isoform	uniprot.isoform																	
uniprot.journal	UniProt journal	https://www.uniprot.org/journals	identifier for a scientific journal, in the UniProt database	^\d{4}$	3546	agb@ebi.ac.uk	https://www.uniprot.org/journals/$1				False																											P4616					
uniprot.keyword	UniProt Keywords	http://www.uniprot.org/keywords/	UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries.	^KW-\d{4}$	KW-1273	agb@ebi.ac.uk	https://www.uniprot.org/keywords/$1		https://rest.uniprot.org/keywords/stream?compressed=false&fields=id%2Cname%2Ccategory%2Cgene_ontologies&format=tsv&query=%28%2A%29	SP_KW|UniProtKB-KW|uniprot.keyword|uniprot.kw	False																					uniprot.kw											
uniprot.location	UniProt Subcellular Locations	https://www.uniprot.org/locations/	The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms.	^SL-\d+$	SL-0002	agb@ebi.ac.uk	https://www.uniprot.org/locations/$1		https://rest.uniprot.org/locations/stream?compressed=false&format=obo&query=%28%2A%29	SP_SL|UPLOC|UniProtKB-SubCell	False																																
uniprot.mnemonic	UniProt	https://www.uniprot.org/	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information. This entry represents UniProt mnemonics which combine an alphanumeric representation the protein name and a species identification code representing the biological source of the protein.	^[A-Z0-9]{1,10}_[A-Z0-9]{1,5}$	BRAF_HUMAN	agb@ebi.ac.uk	https://www.uniprot.org/uniprotkb/$1				False																									UniprotMnemonic							
uniprot.proteome	UniProt Proteomes	https://www.uniprot.org/proteomes	UniProt provides proteome sets of proteins whose genomes have been completely sequenced.	^UP\d{9}$	UP000005640		https://www.uniprot.org/proteomes/$1				False																									UniprotProteome							
uniprot.ptm	UniProt Post-Translational Modification	https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/docs/ptmlist	The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format	^PTM-\d{4}$	PTM-0450	agb@ebi.ac.uk	https://biopragmatics.github.io/providers/uniprot.ptm/$1	https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.owl	https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.obo	PTM	False																																
uniprot.resource	UniProt Resource	https://www.uniprot.org/database/	The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.	^DB-\d{4}$	DB-0174	agb@ebi.ac.uk	https://www.uniprot.org/database/$1			uniprot.database|uniprot.db	False																																
uniprot.tissue	Tissue List	https://www.uniprot.org/docs/tisslist.txt	The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.	^TS-\d{4}$	TS-0285	agb@ebi.ac.uk	https://www.uniprot.org/tissues/$1				False				TISSUELIST										tissuelist	tissuelist																	
uniprot.var	UniProt Variants	https://web.expasy.org/variant_pages	The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species.	^\d+$	068078	agb@ebi.ac.uk	http://purl.uniprot.org/annotation/VAR_$1			SP_VAR|UPVAR|UniProtKB_VAR	False																																
uniref	UniRef	https://www.uniprot.org/	The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.	^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$	UniRef90_P00750	agb@ebi.ac.uk	https://www.uniprot.org/uniref/$1				False										2346				uniref								r3d100011518										
unirule	UniRule	https://www.uniprot.org/unirule/	Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites.		UR000124451	agb@ebi.ac.uk	https://www.uniprot.org/unirule/$1				False																																
unists	Database of Sequence Tagged Sites	https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists	UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.	^\d+$	456789		https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1				True				UNISTS						2389				unists	unists						unists											
unite	Molecular database for the identification of fungi	http://unite.ut.ee/	UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.	^UDB\d{6}$	UDB000691	urmas.koljalg@ut.ee	http://unite.ut.ee/bl_forw.php?nimi=$1				False				UNITE						2390		nbdc01905		unite	unite						unite	r3d100011316										
unpd	Universal Natural Products Database	http://pkuxxj.pku.edu.cn/UNPD/									True																																
uo	Units of measurement ontology	https://github.com/bio-ontology-research-group/unit-ontology	Ontology of standardized units	^\d{7}$	0000080	g.gkoutos@gmail.com	http://purl.obolibrary.org/obo/UO_$1				False	UO	UO		UO	UO									uo	uo	uo	uo	UO			uo			uo				Q81661826				
upa	Unipathway	https://github.com/geneontology/unipathway	A manually curated resource for the representation and annotation of metabolic pathways	^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$	UCR00513	Anne.Morgat@sib.swiss	http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1		https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo	UPa|unipathway|unipathway.pathway	True	UPA			UNIPATHWAY	UPA					2645						upa	upa	UPA	414		unipathway							Q85719315				
upheno	Unified Phenotype Ontology	https://github.com/obophenotype/upheno	The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.			jmcl@ebi.ac.uk	http://purl.obolibrary.org/obo/UPHENO_$1				False	UPHENO			UPHENO	UPHENO											upheno	upheno	UPHENO										Q81661827				
urdbms.syndromefinder	UR-DBMS Syndrome Finder			^\d+$	3567	naritomi@med.u-ryukyu.ac.jp	http://syndromefinder.ncchd.go.jp/UR-DBMS/SyndromeDetail.php?winid=1&recid=$1				True												nbdc00728																				
usda.cvb.pcn	United States Department of Agriculture Veterinary Biological Product Code Number	https://www.aphis.usda.gov/veterinary-biologics/licensed-products	"A Product Code Number (PCN) assigned by the Animal and Plant Health Inspection Service (APHIS)'s Center for Veterinary Biologics (CVB) to veterinary biological products such as vaccines, bacterins, antibodies, diagnostic products, antitoxins, bacterin-toxoids, and toxioids approved for veterinary use by the United States Department of Agriculture Veterinary (USDA). A quarterly release, as PDF, can be found [here](https://www.aphis.usda.gov/sites/default/files/currentprodcodebook.pdf).

 The PDF document states (verbatim): The alphanumeric system used for product codes provides for a six-digit number of number-letter combination to be assigned to each product, i.e., the first digit denotes product types; second and third, group by agents; fourth, the viability of vaccine, (live, killed, modified live, etc.); fifth, substrates; and sixth, miscellaneous variables"	^[A-Z0-9]{4}\.[A-Z0-9]{2}$	1011.00						False																																
uspto	United States Patent and Trademark Office	http://patft.uspto.gov/netahtml/PTO/index.html	The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.	^(\d{1,2},?\d{3},?\d{3}|(PP|RE|AI|RX)\d{2},?\d{3}|(D|T|H|X)\d{3},?\d{3})$	4145692		http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1				False				USPTO										uspto	uspto																	
utrdb	UTRdb	https://utrdb.cloud.ba.infn.it/utrdb/index_107.html	A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. 	^([3-5][A-Z])\w+[^A-Z][0-9]$	5UTR_107_ENST00000517291.2		https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1				False												nbdc00730		utrdb																		
vac	Vaccine Adjuvant Compendium	https://vac.niaid.nih.gov	The Vaccine Adjuvant Compendium (VAC) was established in 2020 by the NIAID Division of Allergy, Immunology, and Transplantation to foster collaborations between NIAID-supported adjuvant researchers and the broader scientific community. The VAC displays adjuvant characteristics or metadata defined through NIAID-supported adjuvant studies to help vaccine developers identify suitable adjuvants for various vaccine indications, including immune-mediated and infectious diseases. In addition, the VAC welcomes the inclusion of adjuvant metadata generated by other research programs.	^\d+$	15		https://vac.niaid.nih.gov/view?id=$1				False																																
validatordb	ValidatorDB	https://webchem.ncbr.muni.cz/Platform/ValidatorDb/	Database of validation results for ligands and non-standard residues in the Protein Data Bank.	^[A-Za-z0-9\/]+$	2h6o	david.sehnal@gmail.com	https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1				False				VALIDATORDB								nbdc02174		validatordb	validatordb																pdb	
vandf	Veterans Administration National Drug File	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF	The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes.	^\d+$	4019477	michael.lincoln@med.va.gov	http://purl.bioontology.org/ontology/VANDF/$1				False	VANDF				VANDF						2.16.840.1.113883.6.229																					
vann	A vocabulary for annotating vocabulary descriptions	https://vocab.org/vann/	This document describes a vocabulary for annotating descriptions of vocabularies with examples and usage notes.		usageNote	nospam@iandavis.com	https://vocab.org/vann/#$1				False													vann											vann					vann			
vario	Variation Ontology	http://variationontology.org	The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.	^\d+$	0376	mauno.vihinen@med.lu.se	http://purl.obolibrary.org/obo/VariO_$1				True	VARIO	VARIO		VARIO	VARIO									vario	vario	vario	vario	VariO										Q114677953				
vbase2	Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse	http://www.vbase2.org/vbase2.php	The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.	^\w+$	humIGHV025	wmueller@gbf.de	http://www.vbase2.org/vgene.php?id=$1				False				VBASE2								nbdc01897		vbase2	vbase2						vbase2											
vbo	Vertebrate Breed Ontology	https://github.com/monarch-initiative/vertebrate-breed-ontology	Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names.	^\d{7}$	0000038	Sabrina@tislab.org	http://purl.obolibrary.org/obo/VBO_$1				False	VBO	VBO			VBO	VBO										vbo	vbo	VBO										Q114296193				
vbo.issue	Vertebrate Breed Ontology Issue Tracker	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues	An issue on the Vertebrate Breed Ontology GitHub issue tracker	^\d+$	126		https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/$1				False																																
vbrc	Viral Bioinformatics Resource Center	http://vbrc.org/	The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.	^\d+$	35742		http://vbrc.org/gene_detail.asp?gene_id=$1				True				VBRC										vbrc	vbrc						vbrc											
vcard	Virtual Contact File	https://www.w3.org/TR/vcard-rdf/	vCard is a specification developed by the Internet Engineering Task Force (IETF) for the description of people and organisations		Agent	r@iannel.la	http://www.w3.org/2006/vcard/ns#$1	https://www.w3.org/2006/vcard/ns			False													vcard																vcard			
vcell	VCell Published Models	https://health.uconn.edu/	Models developed with the Virtual Cell (VCell) software prorgam.	^\d{5,}$	201022999		https://vcell.org/biomodel-$1				False														vcell																		
vdrc	Vienna Drosophila Resource Center	http://stockcenter.vdrc.at/control/main	Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. [from RRID]	^\d+$	100291		https://shop.vbc.ac.at/vdrc_store/$1.html				False																							VDRC									
vectorbase	Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens	https://www.vectorbase.org/	VectorBase is part of the VEuPathDB, a NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens and related species of interest. Currently, VectorBase contains genome information for approximately 80 organisms: mosquitoes, bed bugs, biting midges, ticks, tsetse flies, mites, sand flies, house flies, body lice, stable flies, kissing bugs, and a snail which is an intermediate host.	^\D{4}\d{6}(\-\D{2})?$	ISCW007415	d.e.starns@liv.ac.uk	https://vectorbase.org/gene/$1				False				VECTORBASE								nbdc01909		vectorbase	vectorbase						vectorbase	r3d100010880										
vega	Vertebrate Genome Annotation Database	https://vega.archive.ensembl.org/index.html	A repository for high-quality gene models produced by the manual annotation of vertebrate genomes.		OTTHUMG00000169812	jla1@sanger.ac.uk	https://bioregistry.io/vega:$1			VEGA	True																					vega	r3d100012575										
vegbank	VegBank	http://vegbank.org/	VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. 	^VB\.[A-Za-z][A-Za-z]\..*$	VB.Ob.3736.GRSM125		http://vegbank.org/cite/$1				False														vegbank								r3d100010153										
venom	Veterinary Nomenclature	https://venomcoding.org/	The Veterinary Nomenclature (VeNom) is a standard set of clinical veterinary terms for use in referral veterinary hospital electronic patient records and first opinion veterinary practice management systems.	^\d+$	12969	DBrodbelt@RVC.AC.UK					False																																
vfb	Virtual Fly Brain	https://VirtualFlyBrain.org	An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.	^[0-9a-zA-Z]{8}$	00000001	r.court@ed.ac.uk	http://virtualflybrain.org/reports/$1				False														vfb	vfb							r3d100011373										
vfdb.gene	VFDB Gene	http://www.mgc.ac.cn/VFs/	VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.	^\w+$	VFG2154		http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1				False				VFDB.GENE										vfdb.gene	vfdb.gene																	
vfdb.genus	VFDB Genus	http://www.mgc.ac.cn/VFs/	VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.	^\w+$	Chlamydia		http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1				False				VFDB.GENUS										vfdb.genus	vfdb.genus																	
vgnc	Vertebrate Gene Nomenclature Committee	https://vertebrate.genenames.org	The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.	^\d{1,9}$	3792	stweedie@ebi.ac.uk	https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1				False						VGNC						nbdc02624		vgnc											Vgnc	DB-0226						
vhog	Vertebrate Homologous Organ Group Ontology	http://bgee.unil.ch	"vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 ""historical homology"". Each mapping has been manually reviewed, and we provide confidence codes and references when available."	^\d{7}$	0000411	bgee@isb-sib.ch	http://purl.obolibrary.org/obo/VHOG_$1		ftp://ftp.bgee.org/general/ontologies/vHOG.obo	VHOG_RETIRED	True	VHOG			VHOG	VHOG											vhog					vhog											
viaf	VIAF cluster ID	http://viaf.org	The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.	^\d+$	75121530		http://viaf.org/viaf/$1				False			2053											viaf	viaf												P214	Q19832964				
vibso	Vibrational Spectroscopy Ontology	https://nfdi4chem.github.io/VibrationalSpectroscopyOntology/	The Vibration Spectroscopy Ontology defines technical terms with which research data produced in vibrational spectroscopy experiments can be semantically enriched, made machine readable and FAIR.	^\d{7}$	0000008	philip.stroemert@tib.eu	http://purl.obolibrary.org/obo/VIBSO_$1				False																								vibso								
vido	The Virus Infectious Disease Ontology	https://github.com/infectious-disease-ontology-extensions/ido-virus	The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.	^\d{7}$	0001114	johnbeverley2021@u.northwestern.edu	http://purl.obolibrary.org/obo/VIDO_$1	https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl			False	VIDO				VIDO												vido	VIDO														
violinnet	ViolinNet		Defunct vaccine information source from the He Lab	^\d+$	4140		http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=$1			violinID|violinId	True																											P1925					
viperdb	VIPERdb	http://viperdb.scripps.edu/	VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.		2c6s		https://viperdb.org/Info_Page.php?VDB=$1				False												nbdc00835									viperdb	r3d100012362									pdb	
vipr	Virus Pathogen Resource	http://www.viprbrc.org/brc/home.do?decorator=vipr	The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information.	^[A-Za-z 0-9]+$	BeAn 70563	rscheuermann@jcvi.org	http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena				False				VIPR										vipr	vipr							r3d100011931										
viralzone	ViralZone	http://www.expasy.org/viralzone/	ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.	^\d+$	992	Philippe.Lemercier@sib.swiss	https://viralzone.expasy.org/$1			vz	False				VIRALZONE								nbdc02226		viralzone	viralzone						vz	r3d100013314						Q15674507				
virgen	VirGen	http://bioinfo.ernet.in/virgen/virgen.html	VirGen a comprehensive viral genome resource, which organizes the ‘sequence space’ of viral genomes in a structured fashion. It has been developed with an objective to serve as an annotated and curated database for complete viral genome sequences.		AY321118						False																					virgen											
virmirdb	Vir-Mir db	http://alk.ibms.sinica.edu.tw	A database containing predicted viral miRNA candidate hairpins.		11002		http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$1				False																					virmirdb										ncbitaxon	
viroligo	VirOligo	http://viroligo.okstate.edu	The VirOligo database (1) is part of an effort to provide methods suitable for assessing what viruses are present in samples. Such methods should faciliate studies of the spatial and temporal distribution of viruses and their diversity at any one time and place.		BM0456		http://viroligo.okstate.edu/main.php?vid=$1				False																					viroligo											
virsirna	VIRsiRNA	http://crdd.osdd.net/servers/virsirnadb	The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.	^virsi\d+$	virsi1909		http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1				False				VIRSIRNA										virsirna	virsirna																	
virushostdb	Virus-HostDB	https://www.genome.jp/virushostdb/	Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts.  Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys.		438782	ogata@kuicr.kyoto-u.ac.jp	https://www.genome.jp/virushostdb/$1				False												nbdc02395									virushostdb										ncbitaxon	
vita	Virus' miRNA target	http://vita.mbc.nctu.edu.tw/	ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons.		AB016785		http://vita.mbc.nctu.edu.tw/search.php?acc=$1				False																					vita											
vitro	Vitro Application Ontology	https://github.com/vivo-project/Vitro	Vitro is a full stack framework for building semantic web applications. It is not domain specific.		descriptionAnnot		http://vitro.mannlib.cornell.edu/ns/vitro/0.7#$1	https://raw.githubusercontent.com/vivo-archive/Linked-Data-Indexer/refs/heads/master/src/main/resources/vitro-0.7.owl			False																																
vivo	VIVO Ontology	https://vivoweb.org	An ontology about scholarship		Laboratory	christian.hauschke@tib.eu	http://vivoweb.org/ontology/core#$1	https://raw.githubusercontent.com/vivo-ontologies/vivo-ontology/master/vivo.owl			False	VIVO			VIVO	VIVO								vivo											vivo								
vmc	Variation Modelling Collaboration										True																																
vmhgene	VMH Gene	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[0-9]+\.[0-9]+$	8639.1		https://www.vmh.life/#gene/$1				False														vmhgene																		
vmhmetabolite	VMH metabolite	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[a-zA-Z0-9_\(\_\)\[\]]+$	h2o		https://www.vmh.life/#metabolite/$1				False				VMHMETABOLITE										vmhmetabolite	vmhmetabolite																	
vmhreaction	VMH reaction	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[a-zA-Z0-9_\(\_\)\[\]]+$	HEX1		https://www.vmh.life/#reaction/$1				False				VMHREACTION										vmhreaction	vmhreaction																	
vo	Vaccine Ontology	https://violinet.org/vaccineontology	The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clinical vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.	^\d{7}$	0000093	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/VO_$1				False	VO			VO	VO											vo	vo	VO			vo						P1928	Q55118646				
voc4cat	A vocabulary for the catalysis disciplines	https://nfdi4cat.github.io/voc4cat/	Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science.	^\d{7,}$	0000123	nikolaos.moustakas@catalysis.de	https://w3id.org/nfdi4cat/voc4cat_$1				False			20501																					voc4cat								
void	Vocabulary of Interlinked Datasets	http://vocab.deri.ie/void	The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary.		feature		http://rdfs.org/ns/void#$1				False				void									void																void			
vs	SemWeb Vocab Status ontology	https://www.w3.org/2003/06/sw-vocab-status/ns	This vocabulary was created in the FOAF project, based on experience with FOAF, Dublin Core and other early RDF vocabularies. Deployment experience shows that changing namespace URIs is expensive and unrewarding, so this vocabulary provides terms to support in-place evolution of structured data vocabularies. By indicating status at the level of terms rather than vocabularies, dictionary-style, fine grained improvements become easier. Different organizations and parties can agree or disagree on the status of a vocabulary term; however the status published alongside the term may deserve special attention. Future work could include patterns for citing announcements and decisions, or using SKOS to decentralise the extension of the basic status levels. (from artifact)		term_status		http://www.w3.org/2003/06/sw-vocab-status/ns#$1	https://www.w3.org/2003/06/sw-vocab-status/ns			False													vs																vs			
vsao	Vertebrate Skeletal Anatomy Ontology	https://www.nescent.org/phenoscape/Main_Page	Vertebrate skeletal anatomy ontology.	^\d{7}$	0000183	wasila.dahdul@usd.edu	http://purl.obolibrary.org/obo/VSAO_$1			VSAO_RETIRED	True	VSAO			VSAO	VSAO											vsao	vsao				vao							Q114677916				
vsdb	Veterinary Substances DataBase	https://sitem.herts.ac.uk/aeru/vsdb	Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source.	^\d+$	1868		https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm				False																																
vsmo	Ontology for vector surveillance and management	https://code.google.com/archive/p/vector-surveillance-and-management-ontology/	an ontology for vector surveillance and management, focusing on arthropod vectors and vector-borne pathogens with relevance to humans or domestic animals, and with special emphasis on content to support operational activities through inclusion in databases, data management systems, or decision support systems.		0000000	lars.eisen@colostate.edu	http://purl.obolibrary.org/obo/VSMO_$1	https://raw.githubusercontent.com/cthoyt/vsmo/main/vsmo.owl	https://raw.githubusercontent.com/cthoyt/vsmo/main/vsmo.obo		False																																
vso	Vital Sign Ontology	https://bioportal.bioontology.org/ontologies/VSO	The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements.	^\d{7}$	0000041	albertgoldfain@gmail.com	https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1				False	VSO		18355		VSO																vso								vso			
vssocore	Vehicle Signal Specification Core Ontology	https://www.w3.org/TR/2022/WD-vsso-core-20220303/	This ontology describes the car's attributes, branches and signals defined in the Vehicle Signal Specification.		VehicleProperty		https://github.com/w3c/vsso-core#$1				False																								vssocore								
vt	Vertebrate trait ontology	https://github.com/AnimalGenome/vertebrate-trait-ontology	The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms.	^\d{7}$	0000685	caripark@iastate.edu	http://purl.obolibrary.org/obo/VT_$1		https://github.com/AnimalGenome/vertebrate-trait-ontology/raw/master/current_release/vt.obo		False	VT	VT		VT	VT											vt	vt	VT			vt							Q81661831				
vto	Vertebrate Taxonomy Ontology	https://github.com/phenoscape/vertebrate-taxonomy-ontology	Comprehensive hierarchy of extinct and extant vertebrate taxa.	^\d{7}$	9008500	balhoff@renci.org	http://purl.obolibrary.org/obo/VTO_$1				False	VTO			VTO	VTO											vto	vto	VTO										Q81661832				
vuid	Veterans Health Administration (VHA) unique identifier	https://www.va.gov/health	The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year.	^\d+$	4007166						False																																
wb.rnai	WormBase RNAi	https://www.wormbase.org/	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.	^WBRNAi\d{8}$	WBRNAi00086878		https://www.wormbase.org/species/c_elegans/rnai/$1				False				WB.RNAI										wb.rnai	wb.rnai																	
wbbt	C. elegans Gross Anatomy Ontology	https://github.com/obophenotype/c-elegans-gross-anatomy-ontology	Ontology about the gross anatomy of the C. elegans	^\d{7}$	0001290	raymond@caltech.edu	http://purl.obolibrary.org/obo/WBbt_$1			WBbt	False	WBBT			WBbt	WB-BT											wbbt	wbbt	WBbt			wbbt							Q81661834				
wbls	C. elegans development ontology	https://github.com/obophenotype/c-elegans-development-ontology	Ontology about the development and life stages of the C. elegans	^\d{7}$	0000690	cgrove@caltech.edu	http://purl.obolibrary.org/obo/WBls_$1			WBls	False	WBLS			WBLS	WB-LS											wbls	wbls	WBls			wbls							Q81661837				
wbphenotype	C. elegans phenotype	https://github.com/obophenotype/c-elegans-phenotype-ontology	Ontology about C. elegans and other nematode phenotypes	^\d{7}$	0000983	cgrove@caltech.edu	http://purl.obolibrary.org/obo/WBPhenotype_$1			WBPhenotype	False	WBPHENOTYPE			WBPhenotype	WB-PHENOTYPE											wbphenotype	wbphenotype	WBPhenotype			wbphenotype							Q81660503				
wdr	Protocol for Web Description Resources (POWDER) Schema	https://www.w3.org/TR/powder-formal/	Underlying schema for POWDER		tag		http://www.w3.org/2007/05/powder#$1				False																																
wdrs	Protocol for Web Description Resources (POWDER): POWDER-S Vocabulary	https://www.w3.org/2007/05/powder-s	The Protocol for Web Description Resources (POWDER) allows metadata to be associated with groups of resources such as those found on a Web site. Its main 'unit of information' is the Description Resource (DR), one or more of which are contained in a POWDER document. Processing such a document yields RDF triples describing the resources that are within the scope of the DRs. POWDER documents are written in XML and have relatively loose semantics, however, a GRDDL transform, associated with the root namespace, renders the data in RDF/OWL with more formal semantics. [from homepage]		structure		http://www.w3.org/2007/05/powder-s#$1				False													wdrs																wdrs			
webelements	Web Elements	https://www.webelements.com/	Browser for the periodic table of the elements	^\w+$	chromium		https://www.webelements.com/$1				False																																
wgs84	WGS84 Geo Positioning	https://www.w3.org/2003/01/geo/wgs84_pos	A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum		latitude		http://www.w3.org/2003/01/geo/wgs84_pos#$1				False													geo																wgs			
who.va	World Health Organization Verbal Autopsy Code	https://www.who.int/publications/m/item/verbal-autopsy-standards-the-2016-who-verbal-autopsy-instrument	Identifiers assigned by the World Health Organization for coding causes of death from verbal autopsy (VA) reports. These codes are produced as outputs in standard VA analysis software.	^VAs-\d{2}(?:\.\d{2})?$	VAs-09.01						False																																
wicell	WiCell Research Institute Cell Collection	https://www.wicell.org	Cell line collections (Providers)		ai10e-kctd13b		https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true				False						WiCell																										
wikidata	Wikidata	https://www.wikidata.org/	Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.	^(Q|P|E|L)\d+$	Q47475003	vrandecic@gmail.com	http://www.wikidata.org/entity/$1			WD_Entity|wd|wdeschema	False			1940	WIKIDATA		Wikidata	000567							wikidata	wikidata													Q2013				
wikidata.entity	Wikidata Entity	https://www.wikidata.org	Entity in Wikidata	^Q\d+$	Q42		http://www.wikidata.org/entity/$1				False																														wikidata		
wikidata.property	Wikidata Property	https://www.wikidata.org	"Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.
Wikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others."	^P\d+$	P4355		http://www.wikidata.org/entity/$1				False				WD_Prop																										wikidata		
wikigenes	WikiGenes	http://www.wikigenes.org/	WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.	^\d+$	3771877		http://www.wikigenes.org/e/gene/e/$1.html				False				WIKIGENES										wikigenes	wikigenes																ncbigene	
wikipathways	WikiPathways	http://www.wikipathways.org/	WikiPathways is a database of biological pathways maintained by and for the scientific community.	^WP\d{1,5}(\_r\d+)?$	WP732	egon.willighagen@gmail.com	http://www.wikipathways.org/instance/$1	https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.owl	https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.obo		False				WIKIPATHWAYS						3952		nbdc02116		wikipathways	wikipathways		wikipathways		237		wikipathways	r3d100013316			Wikipathways		P2410	Q7999828				
wikipathways.type	WikiPathways Types	https://vocabularies.wikipathways.org/wpTypes	Types used in WikiPathways RDF		Arrow	egon.willighagen@gmail.com	http://vocabularies.wikipathways.org/wpTypes#$1	https://github.com/wikipathways/WpVocabularies/raw/refs/heads/master/docs/wpTypes.owl		wikipathways.types|wptypes	False																																
wikipathways.vocab	WikiPathways Ontology	http://www.wikipathways.org	An ontology supporting data modeling in WikiPathways		DataNode	egon.willighagen@gmail.com	https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23$1	https://github.com/wikipathways/WpVocabularies/raw/refs/heads/master/docs/wp.owl			False	WIKIPATHWAYS				WIKIPATHWAYS																											
wikipedia.en	Wikipedia	http://en.wikipedia.org/wiki/Main_Page	Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.	^\S+$	SM_UB-81		http://en.wikipedia.org/wiki/$1			Wikipedia|wikipedia	False				WIKIPEDIA.EN										wikipedia.en	wikipedia.en						wikipedia											
wiktionary	Wiktionary	https://wiktionary.org	A free dictionary		pharmacist		https://en.wiktionary.org/wiki/$1				False																																
wlmo	Wildlife Monitoring Ontology	https://wildlive.senckenberg.de/wlmo/current/	This semantic artifact describes the semantic relationships between entities which model the setup of a biodiversity monitoring project based on capturing audiovisual digital recordings. It encodes the semantics of the Wildlife Monitoring Ontology and at the same time provides the datamodel behind the wildlive.senckenberg.de platform.		Annotation	alexander.wolodkin@senckenberg.de	https://wildlive.senckenberg.de/wlmo/$1				False									WLMO															wlmo								
woc.ontology	Code Ontology	http://codeontology.org/	An ontology that represents object-oriented programming languages		AccessModifier		http://rdf.webofcode.org/woc/$1				False																								co								
worfdb	C. elegans ORFeome cloning project	http://worfdb.dfci.harvard.edu/	WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).	^\w+(\.\d+)?$	T01B6.1		http://worfdb.dfci.harvard.edu/html/index.php?search_type=name&page=showresultrc&race_query=$1				False				WORFDB								nbdc00738		worfdb	worfdb						worfdb											
world2dpage	The World-2DPAGE database	http://world-2dpage.expasy.org/repository/	A public repository, standards compliant, for proteomics image data published in the literature. This repository currently contains data from 16 published articles, putting together 22 reference maps for 15 species, totalizing nearly 4'400 identified spots.		0020		https://world-2dpage.expasy.org/repository/$1				True																					world2dpage					DB-0121						
worldavatar.compchem	Computational Chemistry Ontology	https://como.ceb.cam.ac.uk/preprints/223/	Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. A mechanism can be constructed from thermodynamic, reaction rate, and transport data that has been obtained either experimentally, computationally, or by a combination of both. In order to implement this approach, two existing ontologies, namely OntoKin, for representing chemical kinetic reaction mechanisms, and OntoCompChem, for representing quantum chemistry calculations, are extended. (from https://nfdi4cat.org/services/ontologie-sammlung/)				http://theworldavatar.com/ontology/ontocompchem/ontocompchem.owl#$1	http://www.theworldavatar.com/ontology/ontocompchem/ontocompchem.owl			False																								ontocompchem								
worldavatar.kin	Ontology for Chemical Kinetic Reaction Mechanisms	http://www.theworldavatar.com/ontokin/	Represents chemical kinetic reaction mechanisms.		ElementNumber		http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#$1	http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl			False																								ontokin								
worldavatar.os	OntoSpecies - Chemical Species Ontology for Data Integration and Knowledge Discovery	https://doi.org/10.17863/CAM.97235.2	OntoSpecies is an ontology developed for representing chemical species.		Charge		http://www.theworldavatar.com/ontology/ontospecies/OntoSpecies.owl#$1				False																								os								
wormbase	WormBase	https://www.wormbase.org/	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.	^(CE[0-9]{5}|WB[A-Z][a-z]+\d+)$	WBGene00000001	todd@wormbase.org	https://www.wormbase.org/get?name=$1			WB|WB_REF|wb|wormbase	False				WormBase						1805		nbdc00740		wb	wb				426		wormbase	r3d100010424	WB-STRAIN:WBStrain			DB-0110	P3860					
wormpep	Wormpep	https://www.wormbase.org/db/seq/protein	Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.	^CE\d{5}$	CE28239		https://www.wormbase.org/db/seq/protein?name=$1				False				WORMPEP										wormpep	wormpep						wormpep											
worms	WoRMS-ID for taxa	http://www.marinespecies.org/	The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.	^\d+$	146421	leen.vandepitte@vliz.be	http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1				False			720	WORMS										worms	worms												P850	Q604063				
wos.researcher	ResearcherID	https://access.clarivate.com/login?app=wos	identifier for a researcher in a system for scientific authors, redirects to a Web of Science ID, along with P3829	^[A-Z]{1,3}-\d{4}-(19|20)\d\d$	B-5720-2018		https://www.webofscience.com/wos/author/record/$1				False																											P1053					
wos.work	Web of Science work ID	https://www.webofscience.com	unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)		000177759000002		https://www.webofscience.com/wos/woscc/full-record/WOS:$1			wos|wosid|wosuid	False																											P8372					
wot	XML Web of Trust Ontology	http://xmlns.com/wot/0.1/	he WOT, or Web Of Trust, schema is designed to facilitate the use of Public Key Cryptography tools such as PGP or GPG to sign RDF documents and document these signatures.		EncryptedDocument		http://xmlns.com/wot/0.1/$1				False													wot																			
wot.hypermedia	Web of Things Hypermedia Controls Ontology	https://www.w3.org/2019/wot/hypermedia#	an ontology for links and forms, the main hypermedia controls in use on the Web. This ontology offers, among others, a means to reify RDF statements interpreted as links between Web resources. It also provides a versatile exchange format for links and forms in RESTful Web applications. [from homepage]		AdditionalExpectedResponse		https://www.w3.org/2019/wot/hypermedia#$1				False																																
wot.security	Web of Things Security Ontology	https://www.w3.org/2019/wot/security	an RDF vocabulary for the security metadata definitions		APIKeySecurityScheme		https://www.w3.org/2019/wot/security#$1				False																																
wot.td	Thing Description Ontology	https://akswnc7.informatik.uni-leipzig.de/dstreitmatter/archivo/w3.org/2019--wot--td/2021.09.22-190316/2019--wot--td_type=pyLodeDoc.html	This ontology aims to model the Web of Things domain according to the W3C Interest Group (http://w3c.github.io/wot/)		description		https://www.w3.org/2019/wot/td#$1				False																								td								
wot.tm	Web of Things Thing Model	https://www.w3.org/2022/wot/tm	The Thing Model (TM) ontology is an RDF axiomatization of the TM concepts, one of the building blocks of the Web of Things (WoT). Besides providing an alternative to the standard JSON representation format for TM documents, the TM ontology can also be used to process contextual information on Things and for alignments with other WoT-related ontologies. [from homepage]		model		https://www.w3.org/2022/wot/tm#$1				False																																
wwf.ecoregion	World Wildlife Fund Ecoregion	https://www.worldwildlife.org/biomes	WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.	^AT\d+$	AT1402		https://www.worldwildlife.org/ecoregions/$1			WWF	False																											P1294	Q6617741				
xao	Xenopus Anatomy Ontology	http://www.xenbase.org/anatomy/xao.do?method=display	XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.	^\d{7}$	0004486	Erik.Segerdell@cchmc.org	http://purl.obolibrary.org/obo/XAO_$1				False	XAO		581	XAO	XAO											xao	xao	XAO									P4495	Q42400040				
xco	Experimental condition ontology	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000	Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.	^\d{7}$	0000780	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/XCO_$1				False	XCO			XCO	XCO											xco	xco	XCO			xco							Q81661839				
xenbase	Xenbase	https://www.xenbase.org/	Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.	^XB\-\w+\-\d+$	XB-GENE-922462	troy_pells@yahoo.ca	https://www.xenbase.org/entry/$1			Xenbase	False				Xenbase						2738				xenbase	xenbase						xenbase	r3d100011331				DB-0129						
xhv	XHTML Vocabulary	https://www.w3.org/1999/xhtml/vocab	This is a vocabulary collection utilized by XHTML Family modules and document types using XHTML Modularization, including XHTML Role and XHTML + RDFa as defined in rdfa-syntax. The XHTML specifications are developed by the W3C XHTML 2 Working Group as part of the W3C HTML Activity. [from homepage]		alternate		http://www.w3.org/1999/xhtml/vocab#$1				False													xhv																xhv			
ximbio	Ximbio	https://ximbio.com	Cell line collections (Providers)	^\d+$	151022		https://ximbio.com/reagent/$1				False						Ximbio																										
xkos	An SKOS extension for representing statistical classifications	http://rdf-vocabulary.ddialliance.org/xkos	An extension of SKOS for representaion of nomenclatures		belongsTo						False													xkos																xkos			
xl	Cross-linker reagents ontology	http://www.psidev.info/groups/controlled-vocabularies	A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.			psidev-ms-vocab@lists.sourceforge.net					True	XL			XL													xl	XL														
xlmod	HUPO-PSI cross-linking and derivatization reagents controlled vocabulary	http://www.psidev.info/groups/controlled-vocabularies	A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.	^\d{5}$	00050	gerhard.mayer@rub.de	http://purl.obolibrary.org/obo/XLMOD_$1				False	XLMOD				XLMOD											xlmod	xlmod	XLMOD										Q81661841				
xmetdb	Xenobiotics Metabolism Database	https://xmetdb.org	Metabolites in the Xenobiotics Metabolism Database.	^\d+$	171		http://www.xmetdb.org/xmetdb/protocol/$1				True																																
xml	Extensible Markup Language	https://www.w3.org/TR/xml/	The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.		lang		http://www.w3.org/XML/1998/namespace#$1				False				xml																												
xpo	Xenopus Phenotype Ontology	https://github.com/obophenotype/xenopus-phenotype-ontology	XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.	^\d+$	0100002	Erik.Segerdell@cchmc.org	http://purl.obolibrary.org/obo/XPO_$1				False	XPO				XPO											xpo	xpo	XPO										Q81661843				
xsd	XML Schema Definition	http://www.w3.org/2001/XMLSchema	This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.		decimal		http://www.w3.org/2001/XMLSchema#$1				False				xsd									xsd																xsd			
xuo	XUO										True																																
ydpm	Yeast Deletion and the Mitochondrial Proteomics Project	http://www-deletion.stanford.edu/YDPM/	The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.	^Y[A-Z]{2}\d+[CW]$	YAL001C		http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1				True				YDPM										ydpm	ydpm						ydpm											
yeastintron	Yeast Intron Database v4.3	http://intron.ucsc.edu/yeast4.3/	The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].	^[A-Z0-9]+$	SNR17A		http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$1				False				YEASTINTRON										yeastintron	yeastintron																	
yeastract	Yeast Searching for Transcriptional Regulators and Consensus Tracking	http://www.yeastract.com	YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.		YBR125c	isacorreia@tecnico.ulisboa.pt	http://www.yeastract.com/view.php?existing=locus&orfname=$1				False																			205		yeastract											
yetfasco	YeTFasCo	http://yetfasco.ccbr.utoronto.ca/	The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.	^\w+\_\d+(\.\d+)?$	YOR172W_571.0		http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1				False				YETFASCO										yetfasco	yetfasco																	
ygob	Yeast Genome Order Browser	http://wolfe.gen.tcd.ie/ygob	YGOB is an online tool for visualising the syntenic context of any gene from several yeast genomes.		ADH1		http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1				True																					ygob										hgnc.symbol	
yid	Yeast Intron Database v3	http://compbio.soe.ucsc.edu/yeast_introns.html	The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].	^[A-Z0-9]+$	SNR17A		http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1				True				YID										yid	yid																	
ymdb	Yeast Metabolome Database	http://www.ymdb.ca	The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).	^YMDB\d+$	YMDB00001	david.wishart@ualberta.ca	http://www.ymdb.ca/compounds/$1				False																			388			r3d100012733										
ypo	Yeast Phenotype Ontology	http://www.yeastgenome.org/				cherry@genome.stanford.edu	http://purl.obolibrary.org/obo/YPO_$1				True				YPO												ypo																
yrcpdr	YRC PDR	http://www.yeastrc.org/pdr/	The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.	^\d+$	2673500	mriffle@u.washington.edu	http://yeastrc.org/pdr/viewProtein.do?id=$1				False				YRCPDR										yrcpdr	yrcpdr						yrc	r3d100010975										
zazuko	Zazuko Prefix Server	https://prefix.zazuko.com/	This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from <https://prefix.zazuko.com/about>)		frbr	ktk@netlabs.org	https://prefix.zazuko.com/prefix/$1:				False																																
zbw.stw	Standard-Thesaurus Wirtschaft	https://zbw.eu/stw/	Der Thesaurus enthält Vokabular zu allen ökonomischen Themenstellungen: über 6.000 Schlagwörter und über 28.000 zusätzliche Synonyme als Zugangshilfe, um individuelle Formulierungen bei der Suche aufzufangen. Auch Fachbegriffe aus benachbarten Bereichen wie z.B. Recht, Soziologie oder Politik sowie Geobegriffe sind dort zu finden. Wenn Sie Schlagwörter aus diesem Vokabular auswählen, können Sie sicher sein Treffer zu erhalten, die zu dem gewünschten Sachgebiet passen. [from homepage]		n		http://zbw.eu/stw/thsys/$1				False																								stw								
zea	Maize gross anatomy	http://www.maizemap.org/	Maize gross anatomy	^\d{7}$	0015177	Leszek@missouri.edu	http://purl.obolibrary.org/obo/ZEA_$1				True	ZEA			ZEA	ZEA											zea					zea							Q114677917				
zeco	Zebrafish Experimental Conditions Ontology	https://github.com/ybradford/zebrafish-experimental-conditions-ontology	Ontology of Zebrafish Experimental Conditions	^\d{7}$	0000171	ybradford@zfin.org	http://purl.obolibrary.org/obo/ZECO_$1				False	ZECO			ZECO	ZECO											zeco	zeco	ZECO										Q81661845				
zenodo.record	Zenodo	https://zenodo.org	Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.	^\d+$	4390079	lars.holm.nielsen@cern.ch	https://zenodo.org/record/$1			zenodo	False												nbdc02187										r3d100010468					P4901					
zfa	Zebrafish anatomy and development ontology	https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources	ZFA description.	^\d{7}$	0005926	van_slyke@zfin.org	http://purl.obolibrary.org/obo/ZFA_$1			ZFA_RETIRED	False	ZFA			ZFA	ZFA											zfa	zfa	ZFA			zfa							Q81661530				
zfin	Zebrafish Information Network Gene	http://zfin.org	ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.	^ZDB\-\w+\-\d+\-\d+$	ZDB-GENE-041118-11	dhowe@zfin.org	http://zfin.org/$1	https://w3id.org/biopragmatics/resources/zfin/zfin.owl.gz	https://w3id.org/biopragmatics/resources/zfin/zfin.obo	ZFIN	False				ZFIN								nbdc00746		zfin	zfin						zfin	r3d100010421	ZIRC			DB-0113	P3870					
zfs	Zebrafish developmental stages ontology	https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources	Developmental stages of the Zebrafish	^\d{7}$	0000050	van_slyke@zfin.org	http://purl.obolibrary.org/obo/ZFS_$1				False	ZFS			ZFS	ZFS											zfs	zfs	ZFS										Q81661847				
zinc	ZINC is not Commercial	http://zinc15.docking.org/	ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.	^(ZINC)?\d+$	ZINC1084		http://zinc15.docking.org/substances/$1				False				ZINC										zinc	zinc							r3d100010372					P2084					
zp	Zebrafish Phenotype Ontology	https://github.com/obophenotype/zebrafish-phenotype-ontology	The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.	^\d+$	0019030	ybradford@zfin.org	http://purl.obolibrary.org/obo/ZP_$1				False	ZP			ZP	ZP											zp	zp	ZP										Q81661852