A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.
Decentralized Biomedical Ontology
bio2obo:debio
15:02:2024 17:43
1.2
definition
orcid:0000-0003-4423-4370
debio:0000005
true
locus group
orcid:0000-0003-4423-4370
obo:chebi/monoisotopicmass
debio:0000016
true
monoisotopic mass
orcid:0000-0003-4423-4370
obo:chebi/charge
debio:0000017
true
charge
orcid:0000-0003-4423-4370
obo:chebi/formula
obo:fbbt#FORMULA
debio:0000018
true
formula
orcid:0000-0003-4423-4370
obo:chebi/mass
debio:0000019
true
mass
orcid:0000-0003-4423-4370
obo:chebi/inchi
obo:fbbt#InChI
wikidata:P234
debio:0000020
true
InChI
orcid:0000-0003-4423-4370
obo:chebi/inchikey
obo:fbbt#InChIKey
wikidata:P235
debio:0000021
true
InChI Key
orcid:0000-0003-4423-4370
obo:chebi/smiles
obo:fbbt#SMILES
debio:0000022
true
smiles
orcid:0000-0003-4423-4370
obo:ncbitaxon#has_rank
debio:0000023
true
has taxonomy rank
orcid:0000-0003-4423-4370
obo:NCBITaxon#_species_group
debio:0000024
true
has species group
orcid:0000-0003-4423-4370
obo:chebi#IUPAC_NAME
obo:fbbt#IUPAC_NAME
debio:0000026
true
IUPAC Name
orcid:0000-0003-4423-4370
obo:chebi#INN
obo:fbbt#INN
debio:0000028
true
International Nonproprietary Name
This term is most applicable to terms appearing in mathematical equations (e.g., rate laws) and connects the base concept to a symbol that has been used to represent it in a synonym.
orcid:0000-0003-4423-4370
debio:0000030
true
has related symbol
This term is most applicable to terms appearing in mathematical equations (e.g., rate laws) and connects the base concept to a the latex representing the symbol that has been used to represent it in a synonym.
orcid:0000-0003-4423-4370
debio:0000031
true
has related LaTeX
Connects an individual representing a physical constant to its numeric value
orcid:0000-0003-4423-4370
debio:0000042
true
constant has value
Connects an individual representing a physical constant to its formula
orcid:0000-0003-4423-4370
debio:0000043
true
constant has formula
database_cross_reference
has_obo_format_version
X has functional parent Y if X is a derivative (e.g., a salt) of Y. E.g., bepridil hydrochloride has functional parent bepridil
orcid:0000-0003-4423-4370
RO:0000015
obo:chebi#has_functional_parent
debio:0000015
has functional parent
X is conjugate base of Y typically means that X is a deprotonated form of Y
orcid:0000-0003-4423-4370
RO:0018033
obo:chebi#is_conjugate_base_of
debio:0000010
is conjugate base of
X is conjugate acid of Y typically means that Y is a protonated form of X
orcid:0000-0003-4423-4370
RO:0018034
obo:chebi#is_conjugate_acid_of
debio:0000011
is conjugate acid of
X and Y are tautomers if they are different realizations of the resonance structure of the same molecule
orcid:0000-0003-4423-4370
RO:0018036
obo:chebi#is_tautomer_of
debio:0000013
is tautomer of
X and Y are in an enantiomeric relationship if flipping all stereocenters of X results in Y
orcid:0000-0003-4423-4370
RO:0018039
obo:chebi#is_enantiomer_of
debio:0000012
is enantiomer of
X has parent hydride Y if the substituents on X are replaced with hydrogens. E.g., SbCl3 has parent hydride SbH3
orcid:0000-0003-4423-4370
RO:0018040
obo:chebi#has_parent_hydride
debio:0000014
has parent hydride
orcid:0000-0003-4423-4370
debio:0000001
gene product is a member of
orcid:0000-0003-4423-4370
debio:0000002
has mature miRNA
X speciesSpecific Y means that Y is a general phenomena, like a pathway, and X is the version that appears in a species. X should state which species with RO:0002162 (in taxon)
orcid:0000-0003-4423-4370
debio:0000003
species specific
orcid:0000-0003-4423-4370
debio:0000004
Antibody has target
orcid:0000-0003-4423-4370
debio:0000006
has salt
X ltr Y means reaction X of undetermined direction has a left-to-right reaction Y. Relevant for Rhea.
orcid:0000-0003-4423-4370
debio:0000007
has left-to-right reaction
X rtl Y means reaction X of undetermined direction has a right-to-left reaction Y. Relevant for Rhea.
orcid:0000-0003-4423-4370
debio:0000008
has right-to-left reaction
X bi Y means reaction X of undetermined direction has a bidirectional reaction Y. Relevant for Rhea.
orcid:0000-0003-4423-4370
debio:0000009
has bi-directional reaction
Related to sequences
orcid:0000-0003-4423-4370
obo:so#has_origin
debio:0000025
has origin
connects a group to its chemical entity (e.g., carboyxylic acid group to acetate)
orcid:0000-0003-4423-4370
obo:chebi#is_substituent_group_from
debio:0000027
is substituent group from
connects any entity to a document (e.g., with a pubmed, doi, pmc, or arxiv identifier)
orcid:0000-0003-4423-4370
debio:0000029
has citation
connects any entity a side effect that it causes. For example, VO:0000112 (Tripedia) induces the side effect HP:0002013 (Vomiting)
orcid:0000-0003-4423-4370
debio:0000032
causes side effect
connects a pathogen (NCBITaxon) to a host (NCBITaxon)
orcid:0000-0003-4423-4370
debio:0000033
pathogen has host
connects a vaccine (VO) to a gene that has been engineered. Most applicable to OMVs, Nanosponges, and nanolipoparticles (NLP).
orcid:0000-0003-4423-4370
debio:0000034
vaccine has gene engineering
connects a clinical trial to an intervention it investigates
orcid:0000-0003-4423-4370
debio:0000035
has intervention
connects a clinical trial to a condition it investigates
orcid:0000-0003-4423-4370
debio:0000036
has condition
connects a vaccine to its platform
orcid:0000-0003-4423-4370
debio:0000037
has platform
connects any entity to an article in which it's mentioned, e.g., extracted from NER
orcid:0000-0003-4423-4370
debio:0000038
mentioned in
connects an article to a term it was annotated with (i.e. pubmed annotated with MeSH term)
orcid:0000-0003-4423-4370
debio:0000039
annotated with
connects a related trial registered in a different registry
orcid:0000-0003-4423-4370
debio:0000040
related trial
Sibling relationship to vo:0001011 (immunizes against disease)
orcid:0000-0003-4423-4370
debio:0000041
prevents infection
A relationship where the domain is a taxon and the range is a vaccine family. E.g., Severe acute respiratory syndrome coronavirus 2 (ncbitaxon:2697049) is the pathogen that defines vaccine class COVID-19 vaccine (VO:0004908). Sort of an inverse of VO:0003355, but more specific
orcid:0000-0003-4423-4370
debio:0000044
pathogen defines vaccine class
connects a vaccine platform that is a vector vaccine to a pathogen that it uses as a vector
orcid:0000-0003-4423-4370
debio:0000045
vector vaccine uses pathogen as vector
connects any entity to an article that a search over the entity label or its synonyms produces
orcid:0000-0001-9439-5346
debio:0000046
search results in
connects a reaction (e.g., from Rhea) to a molecular function (e.g., from GO) that corresponds
orcid:0000-0003-4423-4370
debio:0000047
reaction enabled by molecular function
connects a trial (e.g., from ClinicalTrials.gov) to a country (e.g., from GeoNames) based on where the trial took place
orcid:0000-0003-4423-4370
debio:0000048
trial occurred in country
connects a vaccine (e.g., from VO) to a country or organization where it has an active license through standard approval
orcid:0000-0003-4423-4370
debio:0000049
has active license from
connects a vaccine (e.g., from VO) to a country or organization where it has an active license through emergency use authorization (EUA)
orcid:0000-0003-4423-4370
debio:0000050
has active EUA license from