A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON. Decentralized Biomedical Ontology bio2obo:debio 15:02:2024 17:43 1.2 definition orcid:0000-0003-4423-4370 debio:0000005 true locus group orcid:0000-0003-4423-4370 obo:chebi/monoisotopicmass debio:0000016 true monoisotopic mass orcid:0000-0003-4423-4370 obo:chebi/charge debio:0000017 true charge orcid:0000-0003-4423-4370 obo:chebi/formula obo:fbbt#FORMULA debio:0000018 true formula orcid:0000-0003-4423-4370 obo:chebi/mass debio:0000019 true mass orcid:0000-0003-4423-4370 obo:chebi/inchi obo:fbbt#InChI wikidata:P234 debio:0000020 true InChI orcid:0000-0003-4423-4370 obo:chebi/inchikey obo:fbbt#InChIKey wikidata:P235 debio:0000021 true InChI Key orcid:0000-0003-4423-4370 obo:chebi/smiles obo:fbbt#SMILES debio:0000022 true smiles orcid:0000-0003-4423-4370 obo:ncbitaxon#has_rank debio:0000023 true has taxonomy rank orcid:0000-0003-4423-4370 obo:NCBITaxon#_species_group debio:0000024 true has species group orcid:0000-0003-4423-4370 obo:chebi#IUPAC_NAME obo:fbbt#IUPAC_NAME debio:0000026 true IUPAC Name orcid:0000-0003-4423-4370 obo:chebi#INN obo:fbbt#INN debio:0000028 true International Nonproprietary Name This term is most applicable to terms appearing in mathematical equations (e.g., rate laws) and connects the base concept to a symbol that has been used to represent it in a synonym. orcid:0000-0003-4423-4370 debio:0000030 true has related symbol This term is most applicable to terms appearing in mathematical equations (e.g., rate laws) and connects the base concept to a the latex representing the symbol that has been used to represent it in a synonym. orcid:0000-0003-4423-4370 debio:0000031 true has related LaTeX Connects an individual representing a physical constant to its numeric value orcid:0000-0003-4423-4370 debio:0000042 true constant has value Connects an individual representing a physical constant to its formula orcid:0000-0003-4423-4370 debio:0000043 true constant has formula database_cross_reference has_obo_format_version X has functional parent Y if X is a derivative (e.g., a salt) of Y. E.g., bepridil hydrochloride has functional parent bepridil orcid:0000-0003-4423-4370 RO:0000015 obo:chebi#has_functional_parent debio:0000015 has functional parent X is conjugate base of Y typically means that X is a deprotonated form of Y orcid:0000-0003-4423-4370 RO:0018033 obo:chebi#is_conjugate_base_of debio:0000010 is conjugate base of X is conjugate acid of Y typically means that Y is a protonated form of X orcid:0000-0003-4423-4370 RO:0018034 obo:chebi#is_conjugate_acid_of debio:0000011 is conjugate acid of X and Y are tautomers if they are different realizations of the resonance structure of the same molecule orcid:0000-0003-4423-4370 RO:0018036 obo:chebi#is_tautomer_of debio:0000013 is tautomer of X and Y are in an enantiomeric relationship if flipping all stereocenters of X results in Y orcid:0000-0003-4423-4370 RO:0018039 obo:chebi#is_enantiomer_of debio:0000012 is enantiomer of X has parent hydride Y if the substituents on X are replaced with hydrogens. E.g., SbCl3 has parent hydride SbH3 orcid:0000-0003-4423-4370 RO:0018040 obo:chebi#has_parent_hydride debio:0000014 has parent hydride orcid:0000-0003-4423-4370 debio:0000001 gene product is a member of orcid:0000-0003-4423-4370 debio:0000002 has mature miRNA X speciesSpecific Y means that Y is a general phenomena, like a pathway, and X is the version that appears in a species. X should state which species with RO:0002162 (in taxon) orcid:0000-0003-4423-4370 debio:0000003 species specific orcid:0000-0003-4423-4370 debio:0000004 Antibody has target orcid:0000-0003-4423-4370 debio:0000006 has salt X ltr Y means reaction X of undetermined direction has a left-to-right reaction Y. Relevant for Rhea. orcid:0000-0003-4423-4370 debio:0000007 has left-to-right reaction X rtl Y means reaction X of undetermined direction has a right-to-left reaction Y. Relevant for Rhea. orcid:0000-0003-4423-4370 debio:0000008 has right-to-left reaction X bi Y means reaction X of undetermined direction has a bidirectional reaction Y. Relevant for Rhea. orcid:0000-0003-4423-4370 debio:0000009 has bi-directional reaction Related to sequences orcid:0000-0003-4423-4370 obo:so#has_origin debio:0000025 has origin connects a group to its chemical entity (e.g., carboyxylic acid group to acetate) orcid:0000-0003-4423-4370 obo:chebi#is_substituent_group_from debio:0000027 is substituent group from connects any entity to a document (e.g., with a pubmed, doi, pmc, or arxiv identifier) orcid:0000-0003-4423-4370 debio:0000029 has citation connects any entity a side effect that it causes. For example, VO:0000112 (Tripedia) induces the side effect HP:0002013 (Vomiting) orcid:0000-0003-4423-4370 debio:0000032 causes side effect connects a pathogen (NCBITaxon) to a host (NCBITaxon) orcid:0000-0003-4423-4370 debio:0000033 pathogen has host connects a vaccine (VO) to a gene that has been engineered. Most applicable to OMVs, Nanosponges, and nanolipoparticles (NLP). orcid:0000-0003-4423-4370 debio:0000034 vaccine has gene engineering connects a clinical trial to an intervention it investigates orcid:0000-0003-4423-4370 debio:0000035 has intervention connects a clinical trial to a condition it investigates orcid:0000-0003-4423-4370 debio:0000036 has condition connects a vaccine to its platform orcid:0000-0003-4423-4370 debio:0000037 has platform connects any entity to an article in which it's mentioned, e.g., extracted from NER orcid:0000-0003-4423-4370 debio:0000038 mentioned in connects an article to a term it was annotated with (i.e. pubmed annotated with MeSH term) orcid:0000-0003-4423-4370 debio:0000039 annotated with connects a related trial registered in a different registry orcid:0000-0003-4423-4370 debio:0000040 related trial Sibling relationship to vo:0001011 (immunizes against disease) orcid:0000-0003-4423-4370 debio:0000041 prevents infection A relationship where the domain is a taxon and the range is a vaccine family. E.g., Severe acute respiratory syndrome coronavirus 2 (ncbitaxon:2697049) is the pathogen that defines vaccine class COVID-19 vaccine (VO:0004908). Sort of an inverse of VO:0003355, but more specific orcid:0000-0003-4423-4370 debio:0000044 pathogen defines vaccine class connects a vaccine platform that is a vector vaccine to a pathogen that it uses as a vector orcid:0000-0003-4423-4370 debio:0000045 vector vaccine uses pathogen as vector connects any entity to an article that a search over the entity label or its synonyms produces orcid:0000-0001-9439-5346 debio:0000046 search results in connects a reaction (e.g., from Rhea) to a molecular function (e.g., from GO) that corresponds orcid:0000-0003-4423-4370 debio:0000047 reaction enabled by molecular function connects a trial (e.g., from ClinicalTrials.gov) to a country (e.g., from GeoNames) based on where the trial took place orcid:0000-0003-4423-4370 debio:0000048 trial occurred in country connects a vaccine (e.g., from VO) to a country or organization where it has an active license through standard approval orcid:0000-0003-4423-4370 debio:0000049 has active license from connects a vaccine (e.g., from VO) to a country or organization where it has an active license through emergency use authorization (EUA) orcid:0000-0003-4423-4370 debio:0000050 has active EUA license from