{
  "id": "brian2",
  "name": "Brian 2",
  "version": "2.4.2",
  "description": "Clock-driven simulator for spiking neural networks",
  "urls": [{
    "type": "Home page",
    "url": "https://briansimulator.org"
  }],
  "image": {
    "url": "ghcr.io/biosimulators/biosimulators_pyneuroml/brian2:2.4.2",
    "format": {
      "namespace": "EDAM",
      "id": "format_3973",
      "version": null,
      "supportedFeatures": []
    },
    "operatingSystemType": "Linux"
  },
  "cli": {
    "packageRepository": "PyPI",
    "package": "biosimulators-pyneuroml",
    "command": "biosimulators-brian2",
    "installationInstructions": "https://docs.biosimulators.org/Biosimulators_pyNeuroML/installation.html"
  },
  "pythonApi": {
    "package": "biosimulators-brian2",
    "module": "biosimulators_pyneuroml.api.brian2",
    "installationInstructions": "https://docs.biosimulators.org/Biosimulators_pyNeuroML/installation.html"
  },
  "authors": [{
      "firstName": "Romain",
      "lastName": "Brette",
      "identifiers": []
    },
    {
      "firstName": "Dan",
      "lastName": "Goodman",
      "identifiers": []
    },
    {
      "firstName": "Marcel",
      "lastName": "Stimberg",
      "identifiers": []
    }
  ],
  "references": {
    "identifiers": [{
      "namespace": "pypi",
      "id": "Brian2",
      "url": "https://pypi.org/project/Brian2"
    }],
    "citations": [{
        "title": "Brian 2, an intuitive and efficient neural simulator",
        "authors": "Marcel Stimberg, Romain Brette & Dan FM Goodman",
        "journal": "eLife",
        "volume": "8",
        "pages": "e47314",
        "year": 2019,
        "identifiers": [{
          "namespace": "doi",
          "id": "10.7554/eLife.47314",
          "url": "https://doi.org/10.7554/eLife.47314"
        }]
      },
      {
        "title": "The Brian simulator",
        "authors": "Dan FM Goodman & Romain Brette",
        "journal": "Frontiers in Neuroscience",
        "volume": "3",
        "pages": "26",
        "year": 2009,
        "identifiers": [{
          "namespace": "doi",
          "id": "10.3389/neuro.01.026.2009",
          "url": "https://doi.org/10.3389/neuro.01.026.2009"
        }]
      },
      {
        "title": "Brian: a simulator for spiking neural networks in Python",
        "authors": "Dan FM Goodman & Romain Brette",
        "journal": "Frontiers in Neuroinformatics",
        "volume": "2",
        "pages": "5",
        "year": 2008,
        "identifiers": [{
          "namespace": "doi",
          "id": "10.3389/neuro.11.005.2008",
          "url": "https://doi.org/10.3389/neuro.11.005.2008"
        }]
      }
    ]
  },
  "license": {
    "namespace": "SPDX",
    "id": "CECILL-2.1"
  },
  "algorithms": [{
      "id": "EULER",
      "name": "Euler forward method",
      "kisaoId": {
        "namespace": "KISAO",
        "id": "KISAO_0000030"
      },
      "modelingFrameworks": [{
        "namespace": "SBO",
        "id": "SBO_0000293"
      }],
      "modelFormats": [{
          "namespace": "EDAM",
          "id": "format_9004",
          "version": null,
          "supportedFeatures": []
        },
        {
          "namespace": "EDAM",
          "id": "format_3971",
          "version": null,
          "supportedFeatures": []
        }
      ],
      "modelChangePatterns": [{
          "name": "Change component attributes",
          "types": ["SedAttributeModelChange", "SedComputeAttributeChangeModelChange", "SedSetValueAttributeModelChange"],
          "target": {
            "value": "//*/@*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Add components",
          "types": ["SedAddXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Remove components",
          "types": ["SedRemoveXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Change components",
          "types": ["SedChangeXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        }
      ],
      "simulationFormats": [{
        "namespace": "EDAM",
        "id": "format_3685",
        "version": null,
        "supportedFeatures": []
      }],
      "simulationTypes": ["SedUniformTimeCourseSimulation"],
      "archiveFormats": [{
        "namespace": "EDAM",
        "id": "format_3686",
        "version": null,
        "supportedFeatures": []
      }],
      "citations": [],
      "parameters": [],
      "outputDimensions": [{
        "namespace": "SIO",
        "id": "SIO_000418"
      }],
      "outputVariablePatterns": [],
      "availableSoftwareInterfaceTypes": [
        "library"
      ],
      "dependencies": [{
          "name": "libNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuralEnsemble/libNeuroML"
        },
        {
          "name": "jNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuroML/jNeuroML"
        },
        {
          "name": "pyLEMS",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/LEMS/pylems"
        },
        {
          "name": "pyNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuroML/pyNeuroML"
        }
      ]
    },
    {
      "id": "RK2",
      "name": "2nd order Runge-kutta method",
      "kisaoId": {
        "namespace": "KISAO",
        "id": "KISAO_0000381"
      },
      "modelingFrameworks": [{
        "namespace": "SBO",
        "id": "SBO_0000293"
      }],
      "modelFormats": [{
          "namespace": "EDAM",
          "id": "format_9004",
          "version": null,
          "supportedFeatures": []
        },
        {
          "namespace": "EDAM",
          "id": "format_3971",
          "version": null,
          "supportedFeatures": []
        }
      ],
      "modelChangePatterns": [{
          "name": "Change component attributes",
          "types": ["SedAttributeModelChange", "SedComputeAttributeChangeModelChange", "SedSetValueAttributeModelChange"],
          "target": {
            "value": "//*/@*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Add components",
          "types": ["SedAddXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Remove components",
          "types": ["SedRemoveXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Change components",
          "types": ["SedChangeXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        }
      ],
      "simulationFormats": [{
        "namespace": "EDAM",
        "id": "format_3685",
        "version": null,
        "supportedFeatures": []
      }],
      "simulationTypes": ["SedUniformTimeCourseSimulation"],
      "archiveFormats": [{
        "namespace": "EDAM",
        "id": "format_3686",
        "version": null,
        "supportedFeatures": []
      }],
      "citations": [],
      "parameters": [],
      "outputDimensions": [{
        "namespace": "SIO",
        "id": "SIO_000418"
      }],
      "outputVariablePatterns": [],
      "availableSoftwareInterfaceTypes": [
        "library"
      ],
      "dependencies": [{
          "name": "libNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuralEnsemble/libNeuroML"
        },
        {
          "name": "jNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuroML/jNeuroML"
        },
        {
          "name": "pyLEMS",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/LEMS/pylems"
        },
        {
          "name": "pyNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuroML/pyNeuroML"
        }
      ]
    },
    {
      "id": "RK4",
      "name": "4th order Runge-kutta method",
      "kisaoId": {
        "namespace": "KISAO",
        "id": "KISAO_0000032"
      },
      "modelingFrameworks": [{
        "namespace": "SBO",
        "id": "SBO_0000293"
      }],
      "modelFormats": [{
          "namespace": "EDAM",
          "id": "format_9004",
          "version": null,
          "supportedFeatures": []
        },
        {
          "namespace": "EDAM",
          "id": "format_3971",
          "version": null,
          "supportedFeatures": []
        }
      ],
      "modelChangePatterns": [{
          "name": "Change component attributes",
          "types": ["SedAttributeModelChange", "SedComputeAttributeChangeModelChange", "SedSetValueAttributeModelChange"],
          "target": {
            "value": "//*/@*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Add components",
          "types": ["SedAddXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Remove components",
          "types": ["SedRemoveXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        },
        {
          "name": "Change components",
          "types": ["SedChangeXmlModelChange"],
          "target": {
            "value": "//*",
            "grammar": "XPath"
          }
        }
      ],
      "simulationFormats": [{
        "namespace": "EDAM",
        "id": "format_3685",
        "version": null,
        "supportedFeatures": []
      }],
      "simulationTypes": ["SedUniformTimeCourseSimulation"],
      "archiveFormats": [{
        "namespace": "EDAM",
        "id": "format_3686",
        "version": null,
        "supportedFeatures": []
      }],
      "citations": [],
      "parameters": [],
      "outputDimensions": [{
        "namespace": "SIO",
        "id": "SIO_000418"
      }],
      "outputVariablePatterns": [],
      "availableSoftwareInterfaceTypes": [
        "library"
      ],
      "dependencies": [{
          "name": "libNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuralEnsemble/libNeuroML"
        },
        {
          "name": "jNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuroML/jNeuroML"
        },
        {
          "name": "pyLEMS",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/LEMS/pylems"
        },
        {
          "name": "pyNeuroML",
          "version": null,
          "required": true,
          "freeNonCommercialLicense": true,
          "url": "https://github.com/NeuroML/pyNeuroML"
        }
      ]
    }
  ],
  "interfaceTypes": [
    "library"
  ],
  "supportedOperatingSystemTypes": [
    "platform-independent"
  ],
  "supportedProgrammingLanguages": [{
    "namespace": "Linguist",
    "id": "Python"
  }],
  "funding": [],
  "biosimulators": {
    "specificationVersion": "1.0.0",
    "imageVersion": "1.0.0",
    "validated": false,
    "validationTests": null
  }
}