{ "cells": [ { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": true }, "outputs": [], "source": [ "from pandas import options\n", "options.display.max_rows = 8" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "# Getting started with\n", "\n", "\n", "\n", "**c**omputer **a**ided **m**etabolic **e**ngineering and **o**ptimization\n", "\n", "**cameo** reuses and extends model data structures defined by [cobrapy](https://opencobra.github.io/cobrapy/) (**CO**nstraints-**B**ased **R**econstruction and **A**nalysis tool for **Py**thon). So, in addition to following this quick start guide and other **cameo** tutorials, we encourage you to explore cobrapy's [documentation](https://cobrapy.readthedocs.org/en/latest/cobra.core.html) as well." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Step 1: Load a model\n", "-------------------\n", "\n", "Loading a model is easy. Just import the `load_model` function." ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ " \n", " \n", " \n", " " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "from cameo import load_model" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "For example, load the most current genome-scale metabolic reconstruction of _Escherichia coli_." ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": false }, "outputs": [], "source": [ "model = load_model(\"iJO1366\")" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Models, reactions, metabolites, etc., provide return HTML when evaluated in Jupyter notebooks and can thus be easily inspected." ] }, { "cell_type": "code", "execution_count": 4, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
NameiJO1366
Number of metabolites1805
Number of reactions2583
Reactions
4crsol_c -->
5drib_c -->
aacald_c -->
amob_c -->
mththf_c -->
oxam_c -->
0.000248 4fe4s_c + 0.024732 pe161_p + 5.5e-05 udcpdp_c + 0.03327 ptrc_c + 0.000223 10fthf_c + 0.000658 mn2_c + 0.000223 gthrd_c + 48.752916 h2o_c + 0.012747 pe181_p + 0.025612 dgtp_c + 0.129799 ctp_c + 0.000674 cu2_c + 0.000116 bmocogdp_c + 0.18569 k_c + 2e-06 btn_c + 0.002288 pg181_c + 0.006388 fe2_c + 0.000223 chor_c + 0.007428 fe3_c + 0.003805 pg161_p + 7e-06 mococdp_c + 0.000223 adocbl_c + 0.012366 pe160_c + 0.000324 zn2_c + 4.5e-05 nadh_c + 0.595297 gly_c + 0.149336 met_dsh_L_c + 7e-06 mobd_c + 0.000168 coa_c + 0.004892 pg160_p + 0.000112 nadp_c + 0.088988 cys_dsh_L_c + 0.000223 sheme_c + 0.209121 gtp_c + 0.000335 nadph_c + 0.008253 mg2_c + 0.000223 enter_c + 0.012379 nh4_c + 0.000279 accoa_c + 0.000307 ni2_c + 0.004952 cl_c + 0.000223 mlthf_c + 0.005707 pg160_c + 0.154187 glycogen_c + 0.004439 pg161_c + 0.000223 q8h2_c + 0.000605 murein3px4p_p + 0.000223 fad_c + 0.000223 pheme_c + 0.055234 trp_dsh_L_c + 0.005381 murein4p4p_p + 0.000223 pydx5p_c + 0.001787 nad_c + 0.024805 datp_c + 0.004126 so4_c + 0.000223 amet_c + 0.005448 murein4px4p_p + 0.246506 thr_dsh_L_c + 0.28742 arg_dsh_L_c + 0.140101 utp_c + 0.006744 spmd_c + 0.133993 tyr_dsh_L_c + 0.024805 dttp_c + 0.255712 gln_dsh_L_c + 3e-06 lipopb_c + 0.000223 thmpp_c + 0.000223 ribflv_c + 0.234232 asn_dsh_L_c + 0.411184 val_dsh_L_c + 0.214798 pro_dsh_L_c + 0.009618 pe161_c + 0.180021 phe_dsh_L_c + 0.000223 hemeO_c + 0.437778 leu_dsh_L_c + 0.234232 asp_dsh_L_c + 7e-06 mocogdp_c + 0.001961 pg181_p + 0.000223 5mthf_c + 0.282306 ile_dsh_L_c + 3.1e-05 malcoa_c + 0.004952 ca2_c + 0.000223 2dmmql8_c + 54.119975 atp_c + 0.000223 mql8_c + 0.008151 colipa_e + 0.000673 murein4px4px4p_p + 0.333448 lys_dsh_L_c + 0.002944 clpn160_p + 0.000223 thf_c + 0.00118 clpn181_p + 9.8e-05 succoa_c + 0.209684 ser_dsh_L_c + 0.092056 his_dsh_L_c + 2.5e-05 2fe2s_c + 0.004957 pe181_c + 0.025612 dctp_c + 0.255712 glu_dsh_L_c + 0.499149 ala_dsh_L_c + 0.031798 pe160_p + 0.001345 murein3p3p_p + 0.00229 clpn161_p + 2.4e-05 cobalt2_c --> 53.95 adp_c + 0.749831 ppi_c + 53.95 h_c + 53.945874 pi_c
0.000691 mn2_c + 54.124831 atp_c + 0.02106 pe161_p + 0.006715 fe2_c + 5.5e-05 udcpdp_c + 0.019456 kdo2lipid4_e + 0.000576 coa_c + 0.000447 nadp_c + 0.612638 gly_c + 0.026166 datp_c + 0.027017 dgtp_c + 0.133508 ctp_c + 0.004338 so4_c + 0.000709 cu2_c + 2.6e-05 2fe2s_c + 0.013013 nh4_c + 0.26316 gln_dsh_L_c + 0.241055 asn_dsh_L_c + 0.241055 asp_dsh_L_c + 0.195193 k_c + 0.295792 arg_dsh_L_c + 0.144104 utp_c + 2e-06 btn_c + 0.513689 ala_dsh_L_c + 0.00026 4fe4s_c + 0.137896 tyr_dsh_L_c + 0.007808 fe3_c + 0.000122 bmocogdp_c + 0.343161 lys_dsh_L_c + 2.5e-05 cobalt2_c + 7e-06 mobd_c + 0.005205 cl_c + 0.26316 glu_dsh_L_c + 0.221055 pro_dsh_L_c + 0.153686 met_dsh_L_c + 0.185265 phe_dsh_L_c + 0.000223 pheme_c + 0.001831 nad_c + 0.253687 thr_dsh_L_c + 0.000223 thmpp_c + 0.054154 pe161_c + 0.423162 val_dsh_L_c + 0.000223 10fthf_c + 0.056843 trp_dsh_L_c + 0.000223 2ohph_c + 0.027017 dctp_c + 0.017868 pe160_c + 0.026166 dttp_c + 0.09158 cys_dsh_L_c + 0.215792 ser_dsh_L_c + 0.000223 mlthf_c + 0.013894 murein5px4p_p + 0.000223 sheme_c + 0.215096 gtp_c + 0.008675 mg2_c + 0.000223 thf_c + 0.094738 his_dsh_L_c + 0.290529 ile_dsh_L_c + 0.000223 fad_c + 0.000223 pydx5p_c + 0.000223 amet_c + 0.000323 ni2_c + 48.601527 h2o_c + 0.005205 ca2_c + 0.045946 pe160_p + 0.000341 zn2_c + 0.000223 ribflv_c + 0.450531 leu_dsh_L_c --> 53.95 adp_c + 53.95 h_c + 0.773903 ppi_c + 53.945662 pi_c
12ppd_dsh_R_e -->
12ppd_dsh_S_e -->
14glucan_e -->
15dap_e -->
23camp_e -->
23ccmp_e -->
23cgmp_e -->
23cump_e -->
23dappa_e -->
26dap_dsh_M_e -->
2ddglcn_e -->
34dhpac_e -->
3amp_e -->
3cmp_e -->
3gmp_e -->
3hcinnm_e -->
3hpp_e -->
3hpppn_e -->
3ump_e -->
4abut_e -->
4hoxpacd_e -->
5dglcn_e -->
5mtr_e -->
LalaDglu_e -->
LalaDgluMdap_e -->
LalaDgluMdapDala_e -->
LalaLglu_e -->
ac_e -->
acac_e -->
acald_e -->
acgal_e -->
acgal1p_e -->
acgam_e -->
acgam1p_e -->
acmana_e -->
acmum_e -->
acnam_e -->
acolipa_e -->
acser_e -->
ade_e -->
adn_e -->
adocbl_e -->
ag_e -->
agm_e -->
akg_e -->
ala_dsh_B_e -->
ala_dsh_D_e -->
ala_dsh_L_e -->
alaala_e -->
all_dsh_D_e -->
alltn_e -->
amp_e -->
anhgm_e -->
arab_dsh_L_e -->
arbt_e -->
arbtn_e -->
arbtn_dsh_fe3_e -->
arg_dsh_L_e -->
ascb_dsh_L_e -->
asn_dsh_L_e -->
aso3_e -->
asp_dsh_L_e -->
btn_e -->
but_e -->
butso3_e -->
ca2_e <=>
cbi_e -->
cbl1_e <=>
cd2_e -->
cgly_e -->
chol_e -->
chtbs_e -->
cit_e -->
cl_e <=>
cm_e -->
cmp_e -->
co2_e <=>
cobalt2_e <=>
colipa_e -->
colipap_e -->
cpgn_e -->
cpgn_dsh_un_e -->
crn_e -->
crn_dsh_D_e -->
csn_e -->
cu_e -->
cu2_e <=>
cyan_e -->
cynt_e -->
cys_dsh_D_e -->
cys_dsh_L_e -->
cytd_e -->
dad_dsh_2_e -->
damp_e -->
dca_e -->
dcmp_e -->
dcyt_e -->
ddca_e -->
dgmp_e -->
dgsn_e -->
dha_e -->
dimp_e -->
din_e -->
dms_e -->
dmso_e -->
dopa_e -->
doxrbcn_e -->
dtmp_e -->
dump_e -->
duri_e -->
eca4colipa_e -->
enlipa_e -->
enter_e -->
etha_e -->
ethso3_e -->
etoh_e -->
f6p_e -->
fald_e -->
fe2_e <=>
fe3_e <=>
fe3dcit_e -->
fe3dhbzs_e -->
fe3hox_e -->
fe3hox_dsh_un_e -->
fecrm_e -->
fecrm_dsh_un_e -->
feenter_e -->
feoxam_e -->
feoxam_dsh_un_e -->
for_e -->
fru_e -->
frulys_e -->
fruur_e -->
fuc_dsh_L_e -->
fum_e -->
fusa_e -->
g1p_e -->
g3pc_e -->
g3pe_e -->
g3pg_e -->
g3pi_e -->
g3ps_e -->
g6p_e -->
gal_e -->
gal_dsh_bD_e -->
gal1p_e -->
galct_dsh_D_e -->
galctn_dsh_D_e -->
galctn_dsh_L_e -->
galt_e -->
galur_e -->
gam_e -->
gam6p_e -->
gbbtn_e -->
gdp_e -->
glc_dsh_D_e <=>
glcn_e -->
glcr_e -->
glcur_e -->
glcur1p_e -->
gln_dsh_L_e -->
glu_dsh_L_e -->
gly_e -->
glyald_e -->
glyb_e -->
glyc_e -->
glyc_dsh_R_e -->
glyc2p_e -->
glyc3p_e -->
glyclt_e -->
gmp_e -->
gsn_e -->
gthox_e -->
gthrd_e -->
gtp_e -->
gua_e -->
h_e <=>
h2_e -->
h2o_e <=>
h2o2_e -->
h2s_e -->
hacolipa_e -->
halipa_e -->
hdca_e -->
hdcea_e -->
hg2_e -->
his_dsh_L_e -->
hom_dsh_L_e -->
hxa_e -->
hxan_e -->
idon_dsh_L_e -->
ile_dsh_L_e -->
imp_e -->
indole_e -->
inost_e -->
ins_e -->
isetac_e -->
k_e <=>
kdo2lipid4_e -->
lac_dsh_D_e -->
lac_dsh_L_e -->
lcts_e -->
leu_dsh_L_e -->
lipa_e -->
lipa_cold_e -->
lipoate_e -->
lys_dsh_L_e -->
lyx_dsh_L_e -->
mal_dsh_D_e -->
mal_dsh_L_e -->
malt_e -->
malthx_e -->
maltpt_e -->
malttr_e -->
maltttr_e -->
man_e -->
man6p_e -->
manglyc_e -->
melib_e -->
meoh_e -->
met_dsh_D_e -->
met_dsh_L_e -->
metsox_dsh_R_dsh_L_e -->
metsox_dsh_S_dsh_L_e -->
mg2_e <=>
mincyc_e -->
minohp_e -->
mmet_e -->
mn2_e <=>
mnl_e -->
mobd_e <=>
mso3_e -->
n2o_e -->
na1_e <=>
nac_e -->
nh4_e <=>
ni2_e <=>
nmn_e -->
no_e -->
no2_e -->
no3_e -->
novbcn_e -->
o16a4colipa_e -->
o2_e <=>
o2s_e -->
ocdca_e -->
ocdcea_e -->
octa_e -->
orn_e -->
orot_e -->
pacald_e -->
peamn_e -->
phe_dsh_L_e -->
pheme_e -->
pi_e <=>
pnto_dsh_R_e -->
ppa_e -->
ppal_e -->
pppn_e -->
ppt_e -->
pro_dsh_L_e -->
progly_e -->
psclys_e -->
pser_dsh_L_e -->
ptrc_e -->
pydam_e -->
pydx_e -->
pydxn_e -->
pyr_e -->
quin_e -->
r5p_e -->
rfamp_e -->
rib_dsh_D_e -->
rmn_e -->
sbt_dsh_D_e -->
sel_e <=>
ser_dsh_D_e -->
ser_dsh_L_e -->
skm_e -->
slnt_e <=>
so2_e -->
so3_e -->
so4_e <=>
spmd_e -->
succ_e -->
sucr_e -->
sulfac_e -->
tartr_dsh_D_e -->
tartr_dsh_L_e -->
taur_e -->
tcynt_e -->
thm_e -->
thr_dsh_L_e -->
thrp_e -->
thym_e -->
thymd_e -->
tma_e -->
tmao_e -->
tre_e -->
trp_dsh_L_e -->
tsul_e -->
ttdca_e -->
ttdcea_e -->
ttrcyc_e -->
tungs_e <=>
tym_e -->
tyr_dsh_L_e -->
tyrp_e -->
uacgam_e -->
udpacgal_e -->
udpg_e -->
udpgal_e -->
udpglcur_e -->
ump_e -->
ura_e -->
urea_e -->
uri_e -->
val_dsh_L_e -->
xan_e -->
xmp_e -->
xtsn_e -->
xyl_dsh_D_e -->
xylu_dsh_L_e -->
zn2_e <=>
12dgr120_p --> 12dgr120_c
12dgr140_p --> 12dgr140_c
12dgr141_p --> 12dgr141_c
12dgr160_p --> 12dgr160_c
12dgr161_p --> 12dgr161_c
12dgr180_p --> 12dgr180_c
12dgr181_p --> 12dgr181_c
12ppd_dsh_R_e <=> 12ppd_dsh_R_p
12ppd_dsh_R_p <=> 12ppd_dsh_R_c
12ppd_dsh_S_e <=> 12ppd_dsh_S_p
12ppd_dsh_S_p <=> 12ppd_dsh_S_c
h2o_c + 14glucan_p + atp_c --> adp_c + pi_c + h_c + 14glucan_c
14glucan_e --> 14glucan_p
23camp_e <=> 23camp_p
23ccmp_e <=> 23ccmp_p
23cgmp_e <=> 23cgmp_p
23cump_e <=> 23cump_p
23dappa_p + h_p --> 23dappa_c + h_c
23dappa_e <=> 23dappa_p
h2o_p + 23cump_p --> h_p + 3ump_p
23ccmp_p + h2o_p --> 3cmp_p + h_p
h2o_p + 23camp_p --> 3amp_p + h_p
h2o_p + 23cgmp_p --> 3gmp_p + h_p
26dap_dsh_M_e <=> 26dap_dsh_M_p
2ddecg3p_p --> 2ddecg3p_c
2tdecg3p_p --> 2tdecg3p_c
2tdec7eg3p_p --> 2tdec7eg3p_c
2hdecg3p_p --> 2hdecg3p_c
2hdec9eg3p_p --> 2hdec9eg3p_c
2odecg3p_p --> 2odecg3p_c
2odec11eg3p_p --> 2odec11eg3p_c
2agpe120_p --> 2agpe120_c
2agpe140_p --> 2agpe140_c
2agpe141_p --> 2agpe141_c
2agpe160_p --> 2agpe160_c
2agpe161_p --> 2agpe161_c
2agpe180_p --> 2agpe180_c
2agpe181_p --> 2agpe181_c
ddca_c + 2agpe120_c + atp_c --> amp_c + ppi_c + pe120_c
atp_c + 2agpe140_c + ttdca_c --> amp_c + ppi_c + pe140_c
ttdcea_c + atp_c + 2agpe141_c --> pe141_c + amp_c + ppi_c
hdca_c + atp_c + 2agpe160_c --> ppi_c + pe160_c + amp_c
2agpe161_c + hdcea_c + atp_c --> amp_c + ppi_c + pe161_c
ocdca_c + 2agpe180_c + atp_c --> pe180_c + amp_c + ppi_c
ocdcea_c + 2agpe181_c + atp_c --> amp_c + ppi_c + pe181_c
2agpg120_p --> 2agpg120_c
2agpg140_p --> 2agpg140_c
2agpg141_p --> 2agpg141_c
2agpg160_p --> 2agpg160_c
2agpg161_p --> 2agpg161_c
2agpg180_p --> 2agpg180_c
2agpg181_p --> 2agpg181_c
ddca_c + atp_c + 2agpg120_c --> amp_c + pg120_c + ppi_c
2agpg140_c + ttdca_c + atp_c --> amp_c + ppi_c + pg140_c
2agpg141_c + ttdcea_c + atp_c --> ppi_c + pg141_c + amp_c
atp_c + hdca_c + 2agpg160_c --> ppi_c + amp_c + pg160_c
hdcea_c + atp_c + 2agpg161_c --> pg161_c + amp_c + ppi_c
ocdca_c + 2agpg180_c + atp_c --> amp_c + pg180_c + ppi_c
2agpg181_c + atp_c + ocdcea_c --> amp_c + ppi_c + pg181_c
nadh_c + h_c + 2dhguln_c --> glcn_c + nad_c
h_c + nadph_c + 2dhguln_c --> glcn_c + nadp_c
nadh_c + h_c + 2dhguln_c --> idon_dsh_L_c + nad_c
h_c + nadph_c + 2dhguln_c --> nadp_c + idon_dsh_L_c
2mahmp_c + h2o_c --> pi_c + h_c + 4ampm_c
34dhpac_e <=> 34dhpac_p
h2o_c + 3amac_c + h_c --> msa_c + nh4_c
3amp_e <=> 3amp_p
3cmp_e <=> 3cmp_p
3gmp_e <=> 3gmp_p
3hdecACP_c --> h2o_c + tdec2eACP_c
3hddecACP_c --> h2o_c + tddec2eACP_c
3hcddec5eACP_c --> h2o_c + t3c5ddeceACP_c
3hmrsACP_c --> h2o_c + tmrs2eACP_c
3hcmrs7eACP_c --> h2o_c + t3c7mrseACP_c
3hpalmACP_c --> h2o_c + tpalm2eACP_c
3hcpalm9eACP_c --> h2o_c + t3c9palmeACP_c
3hoctaACP_c --> h2o_c + toctd2eACP_c
3hcvac11eACP_c --> h2o_c + t3c11vaceACP_c
3haACP_c --> but2eACP_c + h2o_c
3hhexACP_c --> h2o_c + thex2eACP_c
3hoctACP_c --> h2o_c + toct2eACP_c
nadh_c + 3hcinnm_c + o2_c + h_c --> h2o_c + nad_c + dhcinnm_c
nadh_c + 3hpppn_c + h_c + o2_c --> nad_c + h2o_c + dhpppn_c
3hpp_e <=> 3hpp_p
h_c + 3hpp_c --> 3hpp_p + h_p
atp_c + 3dhguln_c --> adp_c + h_c + 3dhgulnp_c
h2o_p + 3ump_p --> pi_p + uri_p
3cmp_p + h2o_p --> pi_p + cytd_p
h2o_p + 3amp_p --> adn_p + pi_p
h2o_p + 3gmp_p --> pi_p + gsn_p
h_c + nadph_c + 3odecACP_c <=> nadp_c + 3hdecACP_c
3oddecACP_c + h_c + nadph_c <=> nadp_c + 3hddecACP_c
3ocddec5eACP_c + h_c + nadph_c --> 3hcddec5eACP_c + nadp_c
3omrsACP_c + nadph_c + h_c <=> nadp_c + 3hmrsACP_c
3ocmrs7eACP_c + h_c + nadph_c --> nadp_c + 3hcmrs7eACP_c
h_c + nadph_c + 3opalmACP_c <=> nadp_c + 3hpalmACP_c
3ocpalm9eACP_c + nadph_c + h_c --> nadp_c + 3hcpalm9eACP_c
3ooctdACP_c + h_c + nadph_c <=> nadp_c + 3hoctaACP_c
3ocvac11eACP_c + nadph_c + h_c --> nadp_c + 3hcvac11eACP_c
actACP_c + h_c + nadph_c <=> nadp_c + 3haACP_c
3ohexACP_c + h_c + nadph_c <=> nadp_c + 3hhexACP_c
3ooctACP_c + h_c + nadph_c <=> 3hoctACP_c + nadp_c
h_c + malACP_c + ocACP_c --> co2_c + ACP_c + 3odecACP_c
h_c + malACP_c + dcaACP_c --> co2_c + ACP_c + 3oddecACP_c
h_c + cdec3eACP_c + malACP_c --> 3ocddec5eACP_c + co2_c + ACP_c
malACP_c + h_c + ddcaACP_c --> co2_c + ACP_c + 3omrsACP_c
cddec5eACP_c + h_c + malACP_c --> co2_c + ACP_c + 3ocmrs7eACP_c
h_c + malACP_c + myrsACP_c --> co2_c + ACP_c + 3opalmACP_c
malACP_c + h_c + tdeACP_c --> co2_c + ACP_c + 3ocpalm9eACP_c
h_c + malACP_c + palmACP_c --> 3ooctdACP_c + co2_c + ACP_c
h_c + malACP_c + hdeACP_c --> co2_c + ACP_c + 3ocvac11eACP_c
butACP_c + malACP_c + h_c --> 3ohexACP_c + ACP_c + co2_c
hexACP_c + h_c + malACP_c --> co2_c + ACP_c + 3ooctACP_c
oxadpcoa_c + coa_c --> succoa_c + accoa_c
h2o_c + LalaDgluMdap_p + atp_c --> LalaDgluMdap_c + pi_c + h_c + adp_c
LalaDgluMdap_e <=> LalaDgluMdap_p
3ump_e <=> 3ump_p
o2_p + dopa_p + h2o_p --> 34dhpac_p + nh4_p + h2o2_p
4hoxpacd_e <=> 4hoxpacd_p
h2o_c + phthr_c --> 4hthr_c + pi_c
h2o_c + LalaDgluMdapDala_c --> LalaDgluMdap_c + ala_dsh_D_c
h2o_p + LalaDgluMdapDala_p --> LalaDgluMdap_p + ala_dsh_D_p
h2o_c + atp_c + LalaDgluMdapDala_p --> adp_c + pi_c + h_c + LalaDgluMdapDala_c
LalaDgluMdapDala_e <=> LalaDgluMdapDala_p
5dglcn_c + h_c + nadph_c <=> glcn_c + nadp_c
h_p + 5dglcn_p <=> 5dglcn_c + h_c
5dglcn_e <=> 5dglcn_p
dad_dsh_5_c + h2o_c --> 5drib_c + ade_c
5mtr_e <=> 5mtr_p
5mtr_c + h_c --> h_p + 5mtr_p
ru5p_dsh_D_c <=> ara5p_c
ttdca_c + ACP_c + atp_c --> myrsACP_c + ppi_c + amp_c
ACP_c + ttdcea_c + atp_c --> ppi_c + amp_c + tdeACP_c
ACP_c + hdca_c + atp_c --> ppi_c + amp_c + palmACP_c
ACP_c + hdcea_c + atp_c --> ppi_c + amp_c + hdeACP_c
ocdcea_c + ACP_c + atp_c --> octeACP_c + amp_c + ppi_c
ocdca_c + atp_c + ACP_c --> ocdcaACP_c + ppi_c + amp_c
ACP_c + ddca_c + atp_c --> ppi_c + amp_c + ddcaACP_c
dca_c + ACP_c + atp_c --> ppi_c + amp_c + dcaACP_c
octa_c + ACP_c + atp_c --> ocACP_c + ppi_c + amp_c
o2_c + h2o_c + aact_c --> h2o2_c + mthgxl_c + nh4_c
dtdp4aaddg_c + unagamu_c --> h_c + dtdp_c + unagamuf_c
14glucan_c --> malthx_c
14glucan_p --> malthx_p
h2o_c + arbt6p_c --> g6p_c + hqn_c
4abut_c + akg_c --> sucsal_c + glu_dsh_L_c
nad_c + h2o_c + 4abutn_c --> nadh_c + 4abut_c + 2.0 h_c
4abut_p + h_p --> 4abut_c + h_c
4abut_e <=> 4abut_p
accoa_c + acac_c --> ac_c + aacoa_c
2.0 accoa_c <=> aacoa_c + coa_c
btcoa_c + accoa_c <=> 3ohcoa_c + coa_c
hxcoa_c + accoa_c <=> 3oocoa_c + coa_c
occoa_c + accoa_c <=> 3odcoa_c + coa_c
accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c
ddcacoa_c + accoa_c <=> 3otdcoa_c + coa_c
tdcoa_c + accoa_c <=> coa_c + 3ohdcoa_c
3oodcoa_c + coa_c <=> pmtcoa_c + accoa_c
h_p + acac_p <=> acac_c + h_c
acac_e <=> acac_p
nad_c + acald_c + coa_c <=> nadh_c + h_c + accoa_c
acald_e <=> acald_p
acald_p <=> acald_c
anth_c + accoa_c --> acanth_c + coa_c
gtp_c + adocbip_c + h_c --> agdpcbi_c + ppi_c
atp_c + hco3_c + accoa_c --> adp_c + pi_c + h_c + malcoa_c
atp_c + ppa_c + coa_c --> adp_c + pi_c + ppcoa_c
acgal1p_p + h2o_p --> pi_p + acgal_p
acgal1p_e <=> acgal1p_p
acgal_e <=> acgal_p
h2o_p + acgam1p_p --> pi_p + acgam_p
acgam1p_e <=> acgam1p_p
acgam_c + atp_c --> acgam6p_c + adp_c + h_c
uacgam_c + udcpp_c --> unaga_c + ump_c
pep_c + acgam_p --> acgam6p_c + pyr_c
acgam_e <=> acgam_p
atp_c + acglu_c --> adp_c + acg5p_c
glu_dsh_L_c + accoa_c --> acglu_c + coa_c + h_c
2obut_c + h_c + pyr_c --> co2_c + 2ahbut_c
ac_c + atp_c <=> adp_c + actp_c
2.0 pyr_c + h_c --> alac_dsh_S_c + co2_c
h2o_c + acmum6p_c --> acgam6p_c + lac_dsh_D_c
unaga_c + uacmamu_c --> udp_c + unagamu_c + h_c
pep_c + acmana_p --> pyr_c + acmanap_c
acmana_e <=> acmana_p
acmum_p + pep_c --> pyr_c + acmum6p_c
acmum_e --> acmum_p
h_p + acnam_p --> h_c + acnam_c
acnam_e <=> acnam_p
acnam_c --> pyr_c + acmana_c
btcoa_c + fad_c <=> fadh2_c + b2coa_c
hxcoa_c + fad_c <=> fadh2_c + hx2coa_c
occoa_c + fad_c <=> fadh2_c + oc2coa_c
fad_c + dcacoa_c <=> dc2coa_c + fadh2_c
fad_c + ddcacoa_c <=> fadh2_c + dd2coa_c
tdcoa_c + fad_c <=> fadh2_c + td2coa_c
pmtcoa_c + fad_c <=> hdd2coa_c + fadh2_c
stcoa_c + fad_c <=> fadh2_c + od2coa_c
ACP_c + accoa_c <=> acACP_c + coa_c
h2o_c + acorn_c --> ac_c + orn_c
acolipa_p + h2o_c + atp_c --> adp_c + pi_c + h_c + acolipa_e
acon_dsh_T_c <=> acon_dsh_C_c
acon_dsh_T_c + amet_c --> aconm_c + ahcys_c
cit_c <=> acon_dsh_C_c + h2o_c
acon_dsh_C_c + h2o_c <=> icit_c
acorn_c + akg_c <=> acg5sa_c + glu_dsh_L_c
pi_c + h_c + ddcaACP_c --> ddcap_c + ACP_c
myrsACP_c + pi_c + h_c --> ttdcap_c + ACP_c
pi_c + h_c + tdeACP_c --> ACP_c + ttdceap_c
pi_c + h_c + palmACP_c --> ACP_c + hdcap_c
pi_c + hdeACP_c + h_c --> hdceap_c + ACP_c
ocdcaACP_c + pi_c + h_c --> ocdcap_c + ACP_c
pi_c + octeACP_c + h_c --> ACP_c + ocdceap_c
apoACP_c + coa_c --> pap_c + ACP_c + h_c
ac_c + atp_c + coa_c --> amp_c + ppi_c + accoa_c
acser_e <=> acser_p
acser_c --> acser_p
ac_p + h_p <=> ac_c + h_c
ac_p + na1_p --> na1_c + ac_c
ac_e <=> ac_p
h2o_c + adn_c + h_c --> nh4_c + ins_c
4adcho_c --> pyr_c + h_c + 4abz_c
chor_c + gln_dsh_L_c --> glu_dsh_L_c + 4adcho_c
ade_c + h2o_c + h_c --> nh4_c + hxan_c
ade_p + h_p <=> ade_c + h_c
ade_e <=> ade_p
atp_c + amp_c <=> 2.0 adp_c
gtp_c + amp_c <=> gdp_c + adp_c
itp_c + amp_c <=> adp_c + idp_c
h_c + amet_c --> ametam_c + co2_c
atp_c --> camp_c + ppi_c
adn_c + atp_c --> adp_c + amp_c + h_c
h2o_c + adn_c --> ade_c + rib_dsh_D_c
adn_p + h_p --> adn_c + h_c
adn_p + h_p <=> adn_c + h_c
adn_e <=> adn_p
adocbi_c + atp_c --> adp_c + h_c + adocbip_c
rdmbzi_c + agdpcbi_c --> h_c + adocbl_c + gmp_c
adocbl_p + h2o_c + atp_c --> adp_c + pi_c + adocbl_c + h_c
h_p + adocbl_e --> adocbl_p + h_c
h2o_c + adprib_c --> r5p_c + amp_c + 2.0 h_c
ade_c + prpp_c --> amp_c + ppi_c
aps_c + atp_c --> adp_c + paps_c + h_c
dcamp_c <=> fum_c + amp_c
25aics_c <=> aicar_c + fum_c
asp_dsh_L_c + gtp_c + imp_c --> gdp_c + pi_c + dcamp_c + 2.0 h_c
h2o_c + acgam6p_c --> ac_c + gam6p_c
h2o_c + anhgm3p_c --> anhgm_c + LalaDgluMdap_c
h2o_p + anhgm3p_p --> LalaDgluMdap_p + anhgm_p
h2o_c + anhgm3p_c --> acgam_c + anhm3p_c
h_p + anhgm3p_p --> anhgm3p_c + h_c
anhgm4p_c + h2o_c --> LalaDgluMdapDala_c + anhgm_c
anhgm4p_p + h2o_p --> anhgm_p + LalaDgluMdapDala_p
anhgm4p_c + h2o_c --> anhgm3p_c + ala_dsh_D_c
anhgm4p_p + h2o_p --> anhgm3p_p + ala_dsh_D_p
anhgm4p_c + h2o_c --> acgam_c + anhm4p_c
anhgm4p_p + h_p --> anhgm4p_c + h_c
anhgm_c + h2o_c --> acgam_c + anhm_c
adphep_dsh_DD_c --> adphep_dsh_LD_c
agm_c + h2o_c --> ptrc_c + urea_c
h_p + anhgm_p --> anhgm_c + h_c
agm_e <=> agm_p
ddcaACP_c + 1ddecg3p_c --> ACP_c + pa120_c
myrsACP_c + 1tdecg3p_c --> ACP_c + pa140_c
tdeACP_c + 1tdec7eg3p_c --> pa141_c + ACP_c
1hdecg3p_c + palmACP_c --> ACP_c + pa160_c
hdeACP_c + 1hdec9eg3p_c --> ACP_c + pa161_c
ocdcaACP_c + 1odecg3p_c --> pa180_c + ACP_c
1odec11eg3p_c + octeACP_c --> pa181_c + ACP_c
pi_c + nadp_c + acg5sa_c <=> h_c + nadph_c + acg5p_c
h_e + ag_c --> ag_e + h_c
h2o_c + ahcys_c --> ade_c + rhcys_c
10fthf_c + aicar_c <=> fprica_c + thf_c
air_c + atp_c + hco3_c --> adp_c + 5caiz_c + pi_c + h_c
5aizc_c <=> 5caiz_c
nad_c + akg_c + coa_c --> nadh_c + co2_c + succoa_c
h_p + akg_p <=> akg_c + h_c
akg_e <=> akg_p
alaala_c + h2o_c --> 2.0 ala_dsh_D_c
alaala_p + h2o_c + atp_c --> alaala_c + adp_c + pi_c + h_c
atp_c + 2.0 ala_dsh_D_c <=> alaala_c + adp_c + pi_c + h_c
alaala_e <=> alaala_p
LalaDglu_c <=> LalaLglu_c
ala_dsh_L_c <=> ala_dsh_D_c
pydx5p_c + ala_dsh_D_c --> pyam5p_c + pyr_c
ala_dsh_L_c + akg_c <=> glu_dsh_L_c + pyr_c
ala_dsh_L_c + pydx5p_c --> pyr_c + pyam5p_c
atp_c + ala_dsh_L_c + trnaala_c --> amp_c + alatrna_c + ppi_c
h2o_c + ala_dsh_L_p + atp_c --> adp_c + pi_c + h_c + ala_dsh_L_c
ala_dsh_L_p + h_p --> ala_dsh_L_c + h_c
ala_dsh_L_p + h_p <=> ala_dsh_L_c + h_c
ala_dsh_L_p + na1_p --> na1_c + ala_dsh_L_c
ala_dsh_L_e <=> ala_dsh_L_p
nadh_c + h_c + glyald_c <=> glyc_c + nad_c
etoh_c + nad_c <=> nadh_c + h_c + acald_c
nad_c + h2o_c + pacald_c <=> nadh_c + pac_c + 2.0 h_c
nad_c + acald_c + h2o_c --> nadh_c + ac_c + 2.0 h_c
h2o_c + acald_c + nadp_c --> ac_c + 2.0 h_c + nadph_c
h2o_c + ppal_c + nadp_c --> 2.0 h_c + nadph_c + ppa_c
nad_c + h2o_c + btal_c --> nadh_c + 2.0 h_c + but_c
all_dsh_D_c + atp_c --> adp_c + all6p_c + h_c
all6p_c <=> allul6p_c
alltt_c + 2.0 h_c + 2.0 h2o_c --> co2_c + urdglyc_c + 2.0 nh4_c
h2o_c + alltn_c --> alltt_c + h_c
h_p + alltn_p <=> h_c + alltn_c
alltn_e <=> alltn_p
allul6p_c <=> f6p_c
all_dsh_D_p + h2o_c + atp_c --> all_dsh_D_c + adp_c + pi_c + h_c
all_dsh_D_e <=> all_dsh_D_p
pe160_p + alpp_p --> 2agpe160_p + lpp_p
pg160_p + alpp_p --> 2agpg160_p + lpp_p
mthgxl_c + h_c + nadph_c --> nadp_c + acetol_c
nadh_c + acetol_c + h_c --> 12ppd_dsh_R_c + nad_c
altrn_c --> 2ddglcn_c + h2o_c
h2o_c + anhm3p_c --> LalaDgluMdap_c + anhm_c
h2o_c + anhm4p_c --> LalaDgluMdapDala_c + anhm_c
h2o_c + anhm4p_c --> anhm3p_c + ala_dsh_D_c
malt_c + malttr_c --> maltttr_c + glc_dsh_D_c
malt_c + maltttr_c --> maltpt_c + glc_dsh_D_c
malt_c + maltpt_c --> malthx_c + glc_dsh_D_c
malt_c + malthx_c --> malthp_c + glc_dsh_D_c
acmanap_c <=> acgam6p_c
acmana_c + atp_c --> adp_c + acmanap_c + h_c
8aonn_c + amet_c <=> amob_c + dann_c
2dmmql8_c + amet_c --> ahcys_c + h_c + mql8_c
nad_c + air_c + h2o_c --> nadh_c + 2.0 for_c + 4ampm_c + 3.0 h_c
h2o_c + amp_c --> ade_c + r5p_c
h2o_c + cgly_c --> gly_c + cys_dsh_L_c
h2o_c + progly_c --> pro_dsh_L_c + gly_c
amp_e <=> amp_p
anhgm_e <=> anhgm_p
h2o_c + atp_c + anhm_c --> adp_c + h_c + acmum6p_c
anth_c + prpp_c --> pran_c + ppi_c
chor_c + gln_dsh_L_c --> h_c + glu_dsh_L_c + pyr_c + anth_c
2aobut_c + h_c --> aact_c + co2_c
pimACP_c + ala_dsh_L_c --> co2_c + ACP_c + 8aonn_c
h2o_c + ap4a_c --> 2.0 adp_c + 2.0 h_c
2.0 atp_c + h_c --> ap4a_c + ppi_c
h2o_c + ap5a_c --> adp_c + atp_c + 2.0 h_c
15dap_c + ametam_c --> 5mta_c + na15dap_c + h_c
ddcap_c + glyc3p_c --> pi_c + 1ddecg3p_c + h_c
ttdcap_c + glyc3p_c --> pi_c + 1tdecg3p_c + h_c
glyc3p_c + ttdceap_c --> pi_c + 1tdec7eg3p_c + h_c
glyc3p_c + hdcap_c --> 1hdecg3p_c + pi_c + h_c
hdceap_c + glyc3p_c --> pi_c + h_c + 1hdec9eg3p_c
ocdcap_c + glyc3p_c --> 1odecg3p_c + pi_c + h_c
ocdceap_c + glyc3p_c --> pi_c + h_c + 1odec11eg3p_c
ddcap_c + h2o_c --> pi_c + 2.0 h_c + ddca_c
h2o_c + ttdcap_c --> pi_c + 2.0 h_c + ttdca_c
h2o_c + ttdceap_c --> pi_c + 2.0 h_c + ttdcea_c
h2o_c + hdcap_c --> hdca_c + pi_c + 2.0 h_c
h2o_c + hdceap_c --> pi_c + 2.0 h_c + hdcea_c
h2o_c + ocdcap_c --> pi_c + 2.0 h_c + ocdca_c
h2o_c + ocdceap_c --> ocdcea_c + pi_c + 2.0 h_c
nadh_c + aact_c + h_c <=> nad_c + appl_c
5apru_c + h_c + nadph_c --> nadp_c + 5aprbu_c
arab_dsh_L_c <=> rbl_dsh_L_c
2.0 arbtn_dsh_fe3_c + fadh2_c --> fad_c + 2.0 h_c + 2.0 arbtn_c + 2.0 fe2_c
2.0 arbtn_dsh_fe3_c + fmnh2_c --> fmn_c + 2.0 h_c + 2.0 arbtn_c + 2.0 fe2_c
rbflvrd_c + 2.0 arbtn_dsh_fe3_c --> ribflv_c + 2.0 h_c + 2.0 arbtn_c + 2.0 fe2_c
h2o_c + arbtn_dsh_fe3_p + atp_c --> adp_c + arbtn_dsh_fe3_c + h_c + pi_c
arbtn_e + fe3_e --> arbtn_dsh_fe3_e
h_p + arbtn_p --> arbtn_e + h_c
arbtn_dsh_fe3_e + h_p --> arbtn_dsh_fe3_p + h_c
h_p + arbtn_c --> h_c + arbtn_p
arbt_p + pep_c --> pyr_c + arbt6p_c
arbt_e --> arbt_p
atp_c + arab_dsh_L_p + h2o_c --> adp_c + pi_c + h_c + arab_dsh_L_c
h_p + arab_dsh_L_p <=> arab_dsh_L_c + h_c
h_p + arab_dsh_L_c --> h_c + arab_dsh_L_p
arab_dsh_L_e <=> arab_dsh_L_p
agm_c + arg_dsh_L_p <=> agm_p + arg_dsh_L_c
arg_dsh_L_c + h_c --> agm_c + co2_c
h_p + arg_dsh_L_p --> agm_p + co2_p
orn_c + arg_dsh_L_p <=> orn_p + arg_dsh_L_c
argsuc_c <=> arg_dsh_L_c + fum_c
asp_dsh_L_c + atp_c + citr_dsh_L_c --> argsuc_c + amp_c + ppi_c + h_c
arg_dsh_L_c + trnaarg_c + atp_c --> amp_c + ppi_c + argtrna_c
h2o_c + atp_c + arg_dsh_L_p --> adp_c + pi_c + h_c + arg_dsh_L_c
arg_dsh_L_c + h_p --> arg_dsh_L_p + h_c
arg_dsh_L_e <=> arg_dsh_L_p
pi_c + nadp_c + aspsa_c <=> h_c + nadph_c + 4pasp_c
ascb6p_c + h2o_c --> 3dhgulnp_c + h_c
ascb_dsh_L_p + pep_c --> ascb6p_c + pyr_c
ascb_dsh_L_e <=> ascb_dsh_L_p
h2o_c + asn_dsh_L_c --> nh4_c + asp_dsh_L_c
h2o_p + asn_dsh_L_p --> asp_dsh_L_p + nh4_p
asp_dsh_L_c + h2o_c + atp_c + gln_dsh_L_c --> amp_c + ppi_c + glu_dsh_L_c + asn_dsh_L_c + h_c
asp_dsh_L_c + nh4_c + atp_c --> amp_c + ppi_c + asn_dsh_L_c + h_c
trnaasn_c + atp_c + asn_dsh_L_c --> amp_c + ppi_c + asntrna_c
asn_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + asn_dsh_L_c
h_p + asn_dsh_L_p <=> h_c + asn_dsh_L_c
asn_dsh_L_e <=> asn_dsh_L_p
atp_c + h2o_c + aso3_c --> adp_c + pi_c + h_c + aso3_p
aso3_e <=> aso3_p
asp_dsh_L_c + h_c --> co2_c + ala_dsh_B_c
cbp_c + asp_dsh_L_c --> pi_c + h_c + cbasp_c
atp_c + asp_dsh_L_c <=> adp_c + 4pasp_c
q8_c + asp_dsh_L_c --> q8h2_c + iasp_c + h_c
mqn8_c + asp_dsh_L_c --> iasp_c + h_c + mql8_c
fum_c + asp_dsh_L_c --> succ_c + iasp_c + h_c
o2_c + asp_dsh_L_c --> iasp_c + h2o2_c + h_c
asp_dsh_L_c --> nh4_c + fum_c
akg_c + asp_dsh_L_c <=> glu_dsh_L_c + oaa_c
trnaasp_c + asp_dsh_L_c + atp_c --> amp_c + ppi_c + asptrna_c
h2o_c + asp_dsh_L_p + atp_c --> adp_c + pi_c + asp_dsh_L_c + h_c
asp_dsh_L_p + 2.0 h_p --> asp_dsh_L_c + 2.0 h_c
asp_dsh_L_p + 3.0 h_p --> asp_dsh_L_c + 3.0 h_c
asp_dsh_L_p + h_p --> asp_dsh_L_c + h_c
asp_dsh_L_p + h_p <=> asp_dsh_L_c + h_c
asp_dsh_L_e <=> asp_dsh_L_p
aso4_c + 2.0 gthrd_c --> h2o_c + aso3_c + gthox_c
arg_dsh_L_c + succoa_c --> sucarg_c + coa_c + h_c
nadp_c + athr_dsh_L_c <=> 2aobut_c + nadph_c + h_c
h2o_c + atp_c + h_c --> nh4_c + itp_c
h2o_c + atp_c --> adp_c + pi_c + h_c
atp_c + prpp_c --> prbatp_c + ppi_c
adp_c + pi_c + 4.0 h_p <=> 3.0 h_c + h2o_c + atp_c
h_p + ala_dsh_B_p --> h_c + ala_dsh_B_c
ala_dsh_B_e <=> ala_dsh_B_p
nad_c + h2o_c + betald_c --> nadh_c + glyb_c + 2.0 h_c
h2o_c + nadp_c + betald_c --> glyb_c + 2.0 h_c + nadph_c
moco_c + mptamp_c --> bmoco_c + amp_c + cu2_c
bmoco_c + gtp_c + h_c --> bmoco1gdp_c + ppi_c
gtp_c + bmoco1gdp_c + h_c --> bmocogdp_c + ppi_c
h2o_c + pap_c --> amp_c + pi_c
btnso_c + nadh_c + h_c --> nad_c + btn_c + h2o_c
btnso_c + h_c + nadph_c --> h2o_c + btn_c + nadp_c
h_p + btn_p --> h_c + btn_c
btn_e <=> btn_p
amet_c + dtbt_c + 2fe2s_c --> 2fe1s_c + h_c + btn_c + dad_dsh_5_c + met_dsh_L_c
but_c + accoa_c --> ac_c + btcoa_c
butso3_p + h2o_c + atp_c --> adp_c + pi_c + h_c + butso3_c
butso3_e <=> butso3_p
h_p + but_p <=> but_c + h_c
but_e <=> but_p
gtp_c + bwco_c + h_c --> bwco1gdp_c + ppi_c
bwco1gdp_c + gtp_c + h_c --> bwcogdp_c + ppi_c
mptamp_c + wco_c --> bwco_c + amp_c + cu2_c
ca2_c + h_p --> h_c + ca2_p
ca2_e <=> ca2_p
h_p + 15dap_c + lys_dsh_L_p --> lys_dsh_L_c + h_c + 15dap_p
2.0 h2o2_c --> 2.0 h2o_c + o2_c
ca2_c + na1_p <=> na1_c + ca2_p
atp_c + cbi_c + h_c <=> pppi_c + adocbi_c
h_p + cbi_e --> h_c + cbi_p
h2o_c + atp_c + cbi_p --> adp_c + pi_c + h_c + cbi_c
cbl1_p + h2o_c + atp_c --> adp_c + pi_c + cbl1_c + h_c
h_p + cbl1_e --> h_c + cbl1_p
atp_c + h_c + cbl1_c <=> pppi_c + adocbl_c
cbm_c + 2.0 h_c --> nh4_c + co2_c
nh4_c + atp_c + co2_c <=> adp_c + 2.0 h_c + cbp_c
2.0 atp_c + h2o_c + hco3_c + gln_dsh_L_c --> 2.0 adp_c + pi_c + 2.0 h_c + cbp_c + glu_dsh_L_c
cdg_c + nh4_c + atp_c --> adp_c + pi_c + h_c + preq0_c + h2o_c
h2o_c + atp_c + cd2_c --> adp_c + pi_c + h_c + cd2_p
h_p + cd2_c --> cd2_p + h_c
cd2_e <=> cd2_p
cd2_p --> cd2_c
h2o_c + cdpdddecg_c --> cmp_c + 2.0 h_c + pa120_c
h2o_c + cdpdtdecg_c --> cmp_c + 2.0 h_c + pa140_c
h2o_c + cdpdtdec7eg_c --> pa141_c + cmp_c + 2.0 h_c
h2o_c + cdpdhdecg_c --> cmp_c + pa160_c + 2.0 h_c
h2o_c + cdpdhdec9eg_c --> cmp_c + pa161_c + 2.0 h_c
h2o_c + cdpdodecg_c --> cmp_c + 2.0 h_c + pa180_c
h2o_c + cdpdodec11eg_c --> cmp_c + pa181_c + 2.0 h_c
preq0_c + 2.0 nadph_c + 3.0 h_c --> 2.0 nadp_c + preq1_c
h_c + cph4_c --> cdg_c + nh4_c
atp_c + 4c2me_c --> 2p4c2me_c + adp_c + h_c
pe161_c + 2.0 amet_c --> 2.0 ahcys_c + 2.0 h_c + cpe160_c
2.0 amet_c + pg161_c --> 2.0 ahcys_c + 2.0 h_c + cpg160_c
pe181_c + 2.0 amet_c --> 2.0 ahcys_c + 2.0 h_c + cpe180_c
2.0 amet_c + pg181_c --> 2.0 ahcys_c + cpg180_c + 2.0 h_c
cgly_p + h2o_c + atp_c --> adp_c + cgly_c + h_c + pi_c
cgly_e <=> cgly_p
h2o_c + atp_c + chol_p --> adp_c + pi_c + h_c + chol_c
h_p + chol_p --> chol_c + h_c
chol_e <=> chol_p
chol_c + nad_c --> nadh_c + h_c + betald_c
chor_c --> pphn_c
3psme_c --> chor_c + pi_c
chor_c --> pyr_c + 4hbz_c
chtbs_p + pep_c --> chtbs6p_c + pyr_c
chtbs_e <=> chtbs_p
nadh_c + h_c + o2_c + cinnm_c --> cenchddd_c + nad_c
cit_c --> ac_c + oaa_c
h_p + cit_c --> cit_p + h_c
cit_p + succ_c --> cit_c + succ_p
cit_e <=> cit_p
lipa_cold_p + h2o_c + atp_c --> adp_c + pi_c + h_c + lipa_cold_e
h2o_p + clpn120_p --> pg120_p + h_p + pa120_p
h2o_p + clpn140_p --> pa140_p + h_p + pg140_p
clpn141_p + h2o_p --> h_p + pg141_p + pa141_p
clpn160_p + h2o_p --> pa160_p + h_p + pg160_p
clpn161_p + h2o_p --> pg161_p + h_p + pa161_p
clpn180_p + h2o_p --> pg180_p + h_p + pa180_p
clpn181_p + h2o_p --> pg181_p + pa181_p + h_p
2.0 pg120_p <=> glyc_p + clpn120_p
2.0 pg140_p <=> glyc_p + clpn140_p
2.0 pg141_p <=> glyc_p + clpn141_p
2.0 pg160_p <=> glyc_p + clpn160_p
2.0 pg161_p <=> clpn161_p + glyc_p
2.0 pg180_p <=> glyc_p + clpn180_p
2.0 pg181_p <=> clpn181_p + glyc_p
2.0 cl_p + h_c --> h_p + 2.0 cl_c
cl_e <=> cl_p
h2o_c + cmp_c --> csn_c + r5p_c
cmp_e <=> cmp_p
cm_e <=> cm_p
h_p + cm_p --> h_c + cm_e
co2_e <=> co2_p
co2_p <=> co2_c
h2o_c + atp_c + cobalt2_c --> adp_c + cobalt2_p + h_c + pi_c
h_p + cobalt2_c --> cobalt2_p + h_c
cobalt2_e <=> cobalt2_p
cobalt2_p --> cobalt2_c
udcpdp_p + colipa_p --> colipap_p + udcpp_p
colipap_p + atp_c + h2o_c --> adp_c + pi_c + h_c + colipap_e
h2o_c + atp_c + colipa_c --> adp_c + pi_c + h_c + colipa_p
colipa_p + h2o_c + atp_c --> pi_c + h_c + adp_c + colipa_e
fadh2_c + 2.0 cpgn_c --> fad_c + 2.0 h_c + 2.0 cpgn_dsh_un_c + 2.0 fe2_c
fmnh2_c + 2.0 cpgn_c --> fmn_c + 2.0 h_c + 2.0 cpgn_dsh_un_c + 2.0 fe2_c
rbflvrd_c + 2.0 cpgn_c --> ribflv_c + 2.0 h_c + 2.0 cpgn_dsh_un_c + 2.0 fe2_c
h_p + cpgn_dsh_un_p --> cpgn_dsh_un_e + h_c
cpgn_dsh_un_c + h_p --> h_c + cpgn_dsh_un_p
cpgn_p + h2o_c + atp_c --> adp_c + pi_c + h_c + cpgn_c
cpgn_dsh_un_e + fe3_e --> cpgn_e
h_p + cpgn_e --> cpgn_p + h_c
ahdt_c + h2o_c --> h_c + cph4_c + acald_c + pppi_c
h2o_c + gtp_c --> cpmp_c + ppi_c
cpppg3_c + o2_c + 2.0 h_c --> 2.0 co2_c + 2.0 h2o_c + pppg9_c
cpppg3_c + 2.0 amet_c --> 2.0 co2_c + pppg9_c + 2.0 dad_dsh_5_c + 2.0 met_dsh_L_c
crn_c + bbtcoa_c <=> crncoa_c + gbbtn_c
crn_c + atp_c + coa_c --> adp_c + pi_c + crncoa_c
crncoa_c <=> crnDcoa_c
crn_c + ctbtcoa_c <=> ctbt_c + crncoa_c
crncoa_c <=> h2o_c + ctbtcoa_c
crn_dsh_D_c + atp_c + coa_c --> crnDcoa_c + pi_c + adp_c
h2o_c + crn_dsh_D_p + atp_c --> adp_c + crn_dsh_D_c + pi_c + h_c
crn_dsh_D_p + h_p <=> crn_dsh_D_c + h_c
crn_dsh_D_e <=> crn_dsh_D_p
crn_p + h2o_c + atp_c --> adp_c + pi_c + crn_c + h_c
h_p + crn_p <=> crn_c + h_c
gbbtn_c + crn_p --> crn_c + gbbtn_p
crn_dsh_D_c + crn_p --> crn_dsh_D_p + crn_c
crn_e <=> crn_p
h2o_c + accoa_c + oaa_c --> cit_c + coa_c + h_c
h2o_c + h_c + csn_c --> nh4_c + ura_c
csn_p + h_p --> h_c + csn_c
csn_e <=> csn_p
ctbt_c + atp_c + coa_c --> adp_c + pi_c + ctbtcoa_c
h2o_c + ctbt_p + atp_c --> adp_c + pi_c + h_c + ctbt_c
ctbt_p + h_p <=> ctbt_c + h_c
tdecoa_c <=> td2coa_c
hdcoa_c <=> hdd2coa_c
odecoa_c <=> od2coa_c
utp_c + h2o_c + atp_c + gln_dsh_L_c --> adp_c + pi_c + ctp_c + glu_dsh_L_c + 2.0 h_c
4.0 h_p + 4.0 cu_p + o2_p --> 4.0 cu2_p + 2.0 h2o_p
cu_c + h2o_c + atp_c --> adp_c + cu_p + pi_c + h_c
h2o_c + cu2_c + atp_c --> adp_c + pi_c + h_c + cu2_p
cu2_e <=> cu2_p
cu2_p --> cu2_c
cu_c + h_e --> h_c + cu_e
cu_e <=> cu_p
tsul_c + cyan_c --> so3_c + tcynt_c + h_c
tsul_p + cyan_p --> h_p + so3_p + tcynt_p
cyan_e <=> cyan_p
cynt_c + hco3_c + 3.0 h_c --> 2.0 co2_c + nh4_c
cynt_p + h_p --> cynt_c + h_c
cynt_e <=> cynt_p
h2o_c + cys_dsh_D_c --> nh4_c + h2s_c + pyr_c
h2o_c + cys_dsh_L_c --> pyr_c + nh4_c + h2s_c
cys_dsh_D_p + h2o_c + atp_c --> cys_dsh_D_c + pi_c + h_c + adp_c
cys_dsh_D_e <=> cys_dsh_D_p
acser_c + h2s_c --> cys_dsh_L_c + ac_c + h_c
3sala_c + 2.0 h_c --> so2_c + ala_dsh_L_c
h2o_c + cyst_dsh_L_c --> pyr_c + nh4_c + hcys_dsh_L_c
trnacys_c + atp_c + cys_dsh_L_c --> cystrna_c + amp_c + ppi_c
h2o_c + atp_c + cys_dsh_L_c --> adp_c + pi_c + h_c + cys_dsh_L_p
h2o_c + atp_c + cys_dsh_L_p --> adp_c + pi_c + h_c + cys_dsh_L_c
cys_dsh_L_e <=> cys_dsh_L_p
cys_dsh_L_c --> cys_dsh_L_p
0.5 o2_c + 2.0 h_c + mql8_c --> 2.0 h_p + mqn8_c + h2o_c
q8h2_c + 0.5 o2_c + 2.0 h_c --> 2.0 h_p + h2o_c + q8_c
q8h2_c + 0.5 o2_c + 4.0 h_c --> 4.0 h_p + h2o_c + q8_c
h2o_c + cytd_c + h_c --> uri_c + nh4_c
h2o_c + cytd_c --> rib_dsh_D_c + csn_c
gtp_c + cytd_c --> gdp_c + cmp_c + h_c
h_p + cytd_p --> cytd_c + h_c
h_p + cytd_p <=> cytd_c + h_c
cytd_e <=> cytd_p
cmp_c + atp_c <=> adp_c + cdp_c
dcmp_c + atp_c <=> adp_c + dcdp_c
h_p + lac_dsh_D_p <=> lac_dsh_D_c + h_c
lac_dsh_D_e <=> lac_dsh_D_p
h2o_c + fad_c + ala_dsh_D_c --> fadh2_c + pyr_c + nh4_c
h2o_c + h_c + dad_dsh_2_c --> din_c + nh4_c
damp_c + atp_c <=> adp_c + dadp_c
dad_dsh_2_p + h_p --> dad_dsh_2_c + h_c
dad_dsh_2_e <=> dad_dsh_2_p
atp_c + 12dgr120_c --> adp_c + h_c + pa120_c
12dgr140_c + atp_c --> adp_c + h_c + pa140_c
12dgr141_c + atp_c --> adp_c + h_c + pa141_c
atp_c + 12dgr160_c --> adp_c + h_c + pa160_c
12dgr161_c + atp_c --> adp_c + pa161_c + h_c
12dgr180_c + atp_c --> adp_c + h_c + pa180_c
atp_c + 12dgr181_c --> pa181_c + adp_c + h_c
h_p + ala_dsh_D_p --> h_c + ala_dsh_D_c
ala_dsh_D_e <=> ala_dsh_D_p
damp_e <=> damp_p
h2o_c + 23dappa_c --> pyr_c + 2.0 nh4_c
26dap_dsh_M_c + h_c --> lys_dsh_L_c + co2_c
26dap_dsh_LL_c <=> 26dap_dsh_M_c
h2o_c + atp_c + 26dap_dsh_M_p --> adp_c + pi_c + h_c + 26dap_dsh_M_c
15dap_e <=> 15dap_p
pa120_c + h_c + ctp_c --> cdpdddecg_c + ppi_c
pa140_c + h_c + ctp_c --> cdpdtdecg_c + ppi_c
pa141_c + ctp_c + h_c --> cdpdtdec7eg_c + ppi_c
pa160_c + h_c + ctp_c --> cdpdhdecg_c + ppi_c
pa161_c + h_c + ctp_c --> cdpdhdec9eg_c + ppi_c
ctp_c + h_c + pa180_c --> cdpdodecg_c + ppi_c
pa181_c + ctp_c + h_c --> ppi_c + cdpdodec11eg_c
h2o_c + datp_c + h_c --> ditp_c + nh4_c
ru5p_dsh_D_c --> for_c + h_c + db4p_c
co2_c + dann_c + atp_c --> dtbt_c + pi_c + 3.0 h_c + adp_c
chtbs6p_c + h2o_c --> acgam_c + acgam6p_c
dca_e <=> dca_p
dcmp_e <=> dcmp_p
h2o_c + dctp_c + h_c --> nh4_c + dutp_c
h2o_c + dcyt_c + h_c --> nh4_c + duri_c
dcyt_p + h_p --> dcyt_c + h_c
dcyt_e <=> dcyt_p
ddca_e --> ddca_p
atp_c + 2dh3dgal_c --> adp_c + 2dh3dgal6p_c + h_c
h_p + 2ddglcn_p <=> 2ddglcn_c + h_c
2ddglcn_e <=> 2ddglcn_p
2ddglcn_c + atp_c --> 2ddg6p_c + adp_c + h_c
h2o_c + pep_c + e4p_c --> pi_c + 2dda7p_c
2dh3dgal6p_c <=> pyr_c + g3p_c
dgmp_c + atp_c <=> dgdp_c + adp_c
dgmp_e <=> dgmp_p
h_p + dgsn_p --> dgsn_c + h_c
dgsn_e <=> dgsn_p
23dhacoa_c + h2o_c <=> 3hadpcoa_c
23dhmb_c --> h2o_c + 3mob_c
23dhmp_c --> h2o_c + 3mop_c
dha_c + pep_c --> pyr_c + dhap_c
dha_e <=> dha_p
dha_p <=> dha_c
nad_c + 23ddhb_c <=> nadh_c + 23dhb_c + h_c
23dhb_c + atp_c + h_c --> 23dhba_c + ppi_c
h2o_c + 23dhbzs_c --> ser_dsh_L_c + 23dhb_c
cenchddd_c + nad_c --> nadh_c + dhcinnm_c + h_c
dhcinnm_c + o2_c --> hkntd_c + h_c
23dhdp_c + h_c + nadph_c --> nadp_c + thdp_c
pyr_c + aspsa_c --> 23dhdp_c + h_c + 2.0 h2o_c
dhf_c + nadph_c + h_c <=> nadp_c + thf_c
dhpt_c + glu_dsh_L_c + atp_c --> adp_c + pi_c + h_c + dhf_c
h_c + nadph_c + dhmpt_c --> nadp_c + thmnp_c
octdp_c + dhna_c + h_c --> co2_c + ppi_c + 2dmmql8_c
sbzcoa_c + h_c --> h2o_c + 14dhncoa_c
h2o_c + 14dhncoa_c --> coa_c + dhna_c + h_c
dhnpt_c <=> 6hmhpt_c + gcald_c
dhnpt_c <=> dhmpt_c
q8_c + dhor_dsh_S_c --> q8h2_c + orot_c
mqn8_c + dhor_dsh_S_c --> orot_c + mql8_c
dhor_dsh_S_c + fum_c --> succ_c + orot_c
h2o_c + dhor_dsh_S_c <=> h_c + cbasp_c
nad_c + cechddd_c --> nadh_c + dhpppn_c + h_c
h2o_c + 25drapp_c + h_c --> 5apru_c + nh4_c
6hmhptpp_c + 4abz_c --> dhpt_c + ppi_c
dhptd_c --> mdhdhf_c
dhptdn_c + 3.0 h_c + nadph_c --> nadp_c + thptdn_c
nadh_c + dhptdn_c + 3.0 h_c --> nad_c + thptdn_c
ahdt_c <=> dhmptp_c
2dda7p_c --> 3dhq_c + pi_c
3dhq_c --> h2o_c + 3dhsk_c
dimp_e <=> dimp_p
h_p + din_p --> din_c + h_c
din_e <=> din_p
25dkglcn_c + h_c + nadph_c --> nadp_c + 2dhguln_c
25dkglcn_c + nadh_c + h_c --> nad_c + 5dglcn_c
25dkglcn_c + h_c + nadph_c --> nadp_c + 5dglcn_c
dmpp_c + ipdp_c --> grdp_c + ppi_c
nadh_c + h_c + h2mb4p_c --> dmpp_c + nad_c + h2o_c
2omhmbl_c + amet_c --> q8h2_c + ahcys_c + h_c
dmso_c + mql8_c --> h2o_c + dms_c + mqn8_c
dmso_p + mql8_c --> dms_p + h2o_p + mqn8_c
2dmmql8_c + dmso_c --> h2o_c + 2dmmq8_c + dms_c
dmso_p + 2dmmql8_c --> dms_p + h2o_p + 2dmmq8_c
dmso_e <=> dmso_p
dmso_p <=> dmso_c
dms_e <=> dms_p
h2o_c + dhpmp_c --> dhnpt_c + pi_c
h2o_c + ahdt_c --> dhpmp_c + h_c + ppi_c
nadh_c + h_c + 23doguln_c --> nad_c + 3dhguln_c
dopa_e <=> dopa_p
doxrbcn_e <=> doxrbcn_p
doxrbcn_p + h_p --> doxrbcn_e + h_c
dpcoa_c + atp_c --> adp_c + coa_c + h_c
h_c + 2dhp_c + nadph_c --> nadp_c + pant_dsh_R_c
2dr5p_c --> g3p_c + acald_c
q8_c + dsbard_p --> q8h2_c + dsbaox_p
mqn8_c + dsbard_p --> dsbaox_p + mql8_c
dsbcox_p + 2.0 gthrd_p --> dsbcrd_p + gthox_p
trdrd_c + dsbdox_c --> dsbdrd_c + trdox_c
dsbgox_p + 2.0 gthrd_p --> dsbgrd_p + gthox_p
nadp_c + ser_dsh_D_c <=> 2amsa_c + h_c + nadph_c
h_p + ser_dsh_D_p --> ser_dsh_D_c + h_c
ser_dsh_D_e <=> ser_dsh_D_p
tartr_dsh_D_c --> h2o_c + oaa_c
atp_c + dtmp_c <=> adp_c + dtdp_c
dtmp_e <=> dtmp_p
dump_e <=> dump_p
nad_c + 56dura_c <=> nadh_c + h_c + ura_c
atp_c + duri_c --> adp_c + dump_c + h_c
duri_c + pi_c <=> 2dr1p_c + ura_c
duri_p + h_p --> duri_c + h_c
duri_e <=> duri_p
h2o_c + dutp_c --> dump_c + h_c + ppi_c
dxyl5p_c + h_c + nadph_c --> nadp_c + 2me4p_c
pyr_c + g3p_c + h_c --> dxyl5p_c + co2_c
dxyl_c + atp_c --> adp_c + dxyl5p_c + h_c
nad_c + h2o_c + e4p_c <=> nadh_c + 2.0 h_c + 4per_c
nadh_c + tdec2eACP_c + h_c --> nad_c + dcaACP_c
tdec2eACP_c + h_c + nadph_c --> nadp_c + dcaACP_c
nadh_c + h_c + tddec2eACP_c --> nad_c + ddcaACP_c
nadph_c + h_c + tddec2eACP_c --> nadp_c + ddcaACP_c
nadh_c + h_c + t3c5ddeceACP_c --> cddec5eACP_c + nad_c
nadph_c + h_c + t3c5ddeceACP_c --> cddec5eACP_c + nadp_c
nadh_c + tmrs2eACP_c + h_c --> nad_c + myrsACP_c
tmrs2eACP_c + h_c + nadph_c --> nadp_c + myrsACP_c
nadh_c + t3c7mrseACP_c + h_c --> nad_c + tdeACP_c
t3c7mrseACP_c + h_c + nadph_c --> nadp_c + tdeACP_c
nadh_c + tpalm2eACP_c + h_c --> palmACP_c + nad_c
tpalm2eACP_c + h_c + nadph_c --> nadp_c + palmACP_c
nadh_c + t3c9palmeACP_c + h_c --> nad_c + hdeACP_c
t3c9palmeACP_c + h_c + nadph_c --> nadp_c + hdeACP_c
nadh_c + toctd2eACP_c + h_c --> nad_c + ocdcaACP_c
toctd2eACP_c + h_c + nadph_c --> nadp_c + ocdcaACP_c
nadh_c + t3c11vaceACP_c + h_c --> nad_c + octeACP_c
t3c11vaceACP_c + h_c + nadph_c --> nadp_c + octeACP_c
but2eACP_c + nadh_c + h_c --> nad_c + butACP_c
but2eACP_c + h_c + nadph_c --> nadp_c + butACP_c
nadh_c + thex2eACP_c + h_c --> hexACP_c + nad_c
thex2eACP_c + h_c + nadph_c --> hexACP_c + nadp_c
nadh_c + h_c + toct2eACP_c --> nad_c + ocACP_c
h_c + nadph_c + toct2eACP_c --> nadp_c + ocACP_c
atp_c + h2o_c + eca4colipa_p --> adp_c + pi_c + h_c + eca4colipa_e
eca4und_p + colipa_p --> udcpdp_p + h_p + eca4colipa_p
2.0 unagamuf_p --> udcpdp_p + h_p + eca2und_p
eca2und_p + unagamuf_p --> udcpdp_p + h_p + eca3und_p
unagamuf_p + eca3und_p --> udcpdp_p + eca4und_p + h_p
unagamuf_c --> unagamuf_p
3hbcoa_c <=> h2o_c + b2coa_c
3hhcoa_c <=> h2o_c + hx2coa_c
3hocoa_c <=> h2o_c + oc2coa_c
3hdcoa_c <=> dc2coa_c + h2o_c
3hddcoa_c <=> h2o_c + dd2coa_c
3htdcoa_c <=> h2o_c + td2coa_c
3hhdcoa_c <=> h2o_c + hdd2coa_c
3hodcoa_c <=> h2o_c + od2coa_c
2ddg6p_c --> g3p_c + pyr_c
6pgc_c --> h2o_c + 2ddg6p_c
kdo2lipid4_c + ddcaACP_c --> ACP_c + kdo2lipid4L_c
myrsACP_c + kdo2lipid4L_c --> lipa_c + ACP_c
kdo2lipid4_c + hdeACP_c --> ACP_c + kdo2lipid4p_c
kdo2lipid4p_c + myrsACP_c --> ACP_c + lipa_cold_c
egmeACP_c + h_c + nadph_c --> nadp_c + gmeACP_c
atp_c + h2o_c + enlipa_p --> adp_c + pi_c + h_c + enlipa_e
2pg_c <=> h2o_c + pep_c
3.0 seramp_c + 3.0 23dhba_c --> 6.0 amp_c + 9.0 h_c + enter_c
3.0 h2o_c + enter_c --> 3.0 23dhbzs_c + 3.0 h_c
3.0 h2o_c + feenter_c --> 3.0 23dhbzs_c + fe3_c + 3.0 h_c
h_c + nadph_c + epmeACP_c --> nadp_c + pmeACP_c
etha_c --> nh4_c + acald_c
h_p + etha_p --> etha_c + h_c
etha_e <=> etha_p
ethso3_p + h2o_c + atp_c --> pi_c + h_c + ethso3_c + adp_c
ethso3_e <=> ethso3_p
etoh_e <=> etoh_p
etoh_p <=> etoh_c
f6p_c <=> dha_c + g3p_c
h2o_c + f6p_c --> fru_c + pi_c
2.0 pi_c + f6p_p --> 2.0 pi_p + f6p_c
f6p_e <=> f6p_p
h2o_c + dcaACP_c --> dca_c + ACP_c + h_c
h2o_c + ddcaACP_c --> ACP_c + h_c + ddca_c
h2o_c + myrsACP_c --> ACP_c + h_c + ttdca_c
h2o_c + tdeACP_c --> ACP_c + ttdcea_c + h_c
h2o_c + palmACP_c --> ACP_c + hdca_c + h_c
h2o_c + hdeACP_c --> ACP_c + h_c + hdcea_c
h2o_c + ocACP_c --> octa_c + ACP_c + h_c
h2o_c + dcacoa_c --> dca_c + coa_c + h_c
h2o_c + ddcacoa_c --> coa_c + ddca_c + h_c
h2o_c + tdcoa_c --> coa_c + h_c + ttdca_c
h2o_c + tdecoa_c --> ttdcea_c + h_c + coa_c
h2o_c + pmtcoa_c --> hdca_c + coa_c + h_c
h2o_c + hdcoa_c --> hdcea_c + h_c + coa_c
h2o_c + stcoa_c --> ocdca_c + coa_c + h_c
h2o_c + odecoa_c --> ocdcea_c + coa_c + h_c
h2o_c + hxcoa_c --> coa_c + h_c + hxa_c
h2o_c + occoa_c --> octa_c + coa_c + h_c
h_p + atp_c + dca_p + coa_c --> amp_c + h_c + ppi_c + dcacoa_c
h_p + ddca_p + atp_c + coa_c --> ddcacoa_c + ppi_c + amp_c + h_c
ttdca_p + h_p + atp_c + coa_c --> amp_c + h_c + ppi_c + tdcoa_c
h_p + atp_c + coa_c + ttdcea_p --> amp_c + h_c + ppi_c + tdecoa_c
atp_c + hdca_p + h_p + coa_c --> pmtcoa_c + amp_c + h_c + ppi_c
h_p + hdcea_p + atp_c + coa_c --> amp_c + h_c + ppi_c + hdcoa_c
h_p + atp_c + coa_c + ocdca_p --> amp_c + h_c + ppi_c + stcoa_c
h_p + atp_c + coa_c + ocdcea_p --> amp_c + h_c + ppi_c + odecoa_c
h_p + atp_c + hxa_p + coa_c --> hxcoa_c + amp_c + h_c + ppi_c
h_p + atp_c + coa_c + octa_p --> amp_c + h_c + ppi_c + occoa_c
nadh_c + h_c + fad_c --> fadh2_c + nad_c
fad_c + h_c + nadph_c --> nadp_c + fadh2_c
nad_c + hmgth_c <=> nadh_c + h_c + Sfglutth_c
fald_e <=> fald_p
fald_p <=> fald_c
fald_c + gthrd_c <=> hmgth_c
fdp_c <=> g3p_c + dhap_c
s17bp_c <=> e4p_c + dhap_c
h2o_c + fdp_c --> f6p_c + pi_c
fuc_dsh_L_c <=> fcl_dsh_L_c
atp_c + fcl_dsh_L_c --> adp_c + fc1p_c + h_c
fc1p_c <=> dhap_c + lald_dsh_L_c
fe2_c + ppp9_c --> pheme_c + 2.0 h_c
2.0 h_c + q8_c + for_p --> q8h2_c + co2_p + h_p
mqn8_c + 2.0 h_c + for_p --> co2_p + mql8_c + h_p
o2_c + fmnh2_c + isetac_c --> fmn_c + h_c + h2o_c + gcald_c + so3_c
o2_c + fmnh2_c + mso3_c --> fald_c + fmn_c + h_c + h2o_c + so3_c
o2_c + fmnh2_c + ethso3_c --> fmn_c + h_c + acald_c + h2o_c + so3_c
o2_c + fmnh2_c + butso3_c --> fmn_c + h_c + h2o_c + so3_c + btal_c
o2_c + sulfac_c + fmnh2_c --> fmn_c + h_c + h2o_c + glx_c + so3_c
atp_c + h2o_c + fe2_p --> adp_c + pi_c + h_c + fe2_c
fe2_p + h_p --> fe2_c + h_c
h_p + fe2_c --> fe2_p + h_c
fe2_e <=> fe2_p
fe2_p --> fe2_c
fe3dcit_p + h2o_c + atp_c --> adp_c + pi_c + 2.0 cit_c + fe3_c + h_c
fe3dcit_e + h_p --> fe3dcit_p + h_c
fe3dhbzs_c --> 23dhbzs_c + fe3_c
h2o_c + atp_c + fe3dhbzs_p --> adp_c + pi_c + h_c + fe3dhbzs_c
h_p + fe3dhbzs_e --> h_c + fe3dhbzs_p
fadh2_c + 2.0 fe3hox_c --> fad_c + 2.0 h_c + 2.0 fe2_c + 2.0 fe3hox_dsh_un_c
fmnh2_c + 2.0 fe3hox_c --> fmn_c + 2.0 h_c + 2.0 fe2_c + 2.0 fe3hox_dsh_un_c
rbflvrd_c + 2.0 fe3hox_c --> ribflv_c + 2.0 h_c + 2.0 fe2_c + 2.0 fe3hox_dsh_un_c
h_p + fe3hox_dsh_un_c --> h_c + fe3hox_dsh_un_p
h_p + fe3hox_dsh_un_p --> fe3hox_dsh_un_e + h_c
fe3hox_p + h2o_c + atp_c --> adp_c + pi_c + h_c + fe3hox_c
fe3hox_dsh_un_e + fe3_e --> fe3hox_e
h_p + fe3hox_e --> fe3hox_p + h_c
fadh2_c + 2.0 fe3_c --> fad_c + 2.0 fe2_c + 2.0 h_c
fe3_p + h2o_c + atp_c --> adp_c + pi_c + h_c + fe3_c
fe3_e <=> fe3_p
2.0 fecrm_c + fadh2_c --> 2.0 fecrm_dsh_un_c + 2.0 h_c + fad_c + 2.0 fe2_c
2.0 fecrm_c + fmnh2_c --> fmn_c + 2.0 fecrm_dsh_un_c + 2.0 h_c + 2.0 fe2_c
rbflvrd_c + 2.0 fecrm_c --> 2.0 fecrm_dsh_un_c + 2.0 h_c + 2.0 fe2_c + ribflv_c
h_p + fecrm_dsh_un_p --> fecrm_dsh_un_e + h_c
h_p + fecrm_dsh_un_c --> h_c + fecrm_dsh_un_p
h2o_c + atp_c + fecrm_p --> adp_c + pi_c + h_c + fecrm_c
fe3_e + fecrm_dsh_un_e --> fecrm_e
fecrm_e + h_p --> fecrm_p + h_c
2.0 feenter_c + fadh2_c --> fad_c + 2.0 h_c + 2.0 enter_c + 2.0 fe2_c
2.0 feenter_c + fmnh2_c --> fmn_c + 2.0 h_c + 2.0 enter_c + 2.0 fe2_c
rbflvrd_c + 2.0 feenter_c --> ribflv_c + 2.0 h_c + 2.0 enter_c + 2.0 fe2_c
h2o_c + feenter_p + atp_c --> adp_c + pi_c + h_c + feenter_c
enter_e + fe3_e --> feenter_e
enter_p + h_p --> enter_e + h_c
h_p + feenter_e --> feenter_p + h_c
h_p + enter_c --> enter_p + h_c
fadh2_c + 2.0 feoxam_c --> fad_c + 2.0 h_c + 2.0 fe2_c + 2.0 feoxam_dsh_un_c
fmnh2_c + 2.0 feoxam_c --> fmn_c + 2.0 h_c + 2.0 fe2_c + 2.0 feoxam_dsh_un_c
rbflvrd_c + 2.0 feoxam_c --> ribflv_c + 2.0 h_c + 2.0 fe2_c + 2.0 feoxam_dsh_un_c
h_p + feoxam_dsh_un_p --> feoxam_dsh_un_e + h_c
h_p + feoxam_dsh_un_c --> feoxam_dsh_un_p + h_c
feoxam_p + h2o_c + atp_c --> pi_c + h_c + feoxam_c + adp_c
feoxam_dsh_un_e + fe3_e --> feoxam_e
feoxam_e + h_p --> feoxam_p + h_c
4.0 fe2_p + 4.0 h_p + o2_p --> 4.0 fe3_p + 2.0 h2o_p
2.0 h_c + h2o2_c + 2.0 4fe4s_c --> 2.0 3fe4s_c + 2.0 h2o_c + 2.0 fe3_c
2.0 no_c + 2.0 h_c + 2.0 4fe4s_c --> 2.0 3fe4s_c + n2o_c + h2o_c + 2.0 fe3_c
3fe4s_c + fe2_c --> 4fe4s_c
h2o_c + suc6p_c --> g6p_c + fru_c
for_c + h_c --> h2_c + co2_c
2.0 flxso_c + nadph_c --> nadp_c + 2.0 flxr_c + h_c
ribflv_c + h_c + nadph_c --> nadp_c + rbflvrd_c
nadh_c + ribflv_c + h_c --> rbflvrd_c + nad_c
10fthf_c + mettrna_c --> h_c + thf_c + fmettrna_c
fmn_c + atp_c + h_c --> fad_c + ppi_c
nadh_c + fmn_c + h_c --> fmnh2_c + nad_c
fmn_c + h_c + nadph_c --> nadp_c + fmnh2_c
5fthf_c + h_c --> h2o_c + methf_c
forcoa_c + oxa_c <=> oxalcoa_c + for_c
h_p + for_p --> for_c + h_c
for_e <=> for_p
for_c --> for_p
fum_c + mql8_c --> succ_c + mqn8_c
2dmmql8_c + fum_c --> succ_c + 2dmmq8_c
atp_c + f1p_c --> adp_c + h_c + fdp_c
h2o_c + frulysp_c <=> g6p_c + lys_dsh_L_c
psclys_c <=> frulys_c
frulys_c + atp_c --> adp_c + h_c + frulysp_c
h_p + frulys_p --> h_c + frulys_c
frulys_e <=> frulys_p
fruur_p + h_p <=> fruur_c + h_c
fruur_e <=> fruur_p
fru_p + pep_c --> pyr_c + f6p_c
pep_c + fru_p --> pyr_c + f1p_c
fru_e <=> fru_p
h2o_c + 10fthf_c --> for_c + h_c + thf_c
for_c + atp_c + thf_c --> 10fthf_c + pi_c + adp_c
fuc_dsh_L_e <=> fuc_dsh_L_p
h_p + fuc_dsh_L_p <=> fuc_dsh_L_c + h_c
h2o_c + fum_c <=> mal_dsh_L_c
2.0 h_p + fum_p --> 2.0 h_c + fum_c
3.0 h_p + fum_p --> 3.0 h_c + fum_c
fum_e <=> fum_p
fusa_e <=> fusa_p
h_p + fusa_p --> h_c + fusa_e
gam1p_c + accoa_c --> acgam1p_c + coa_c + h_c
g1p_p + h2o_p --> pi_p + glc_dsh_D_p
dttp_c + g1p_c + h_c --> dtdpglu_c + ppi_c
g1p_e <=> g1p_p
glu1sa_c <=> 5aop_c
h2o_c + glyc2p_c --> glyc_c + pi_c
glyc2p_p + h2o_p --> glyc_p + pi_p
glyc3p_c + ddcaACP_c --> ACP_c + 1ddecg3p_c
myrsACP_c + glyc3p_c --> ACP_c + 1tdecg3p_c
glyc3p_c + tdeACP_c --> ACP_c + 1tdec7eg3p_c
glyc3p_c + palmACP_c --> 1hdecg3p_c + ACP_c
glyc3p_c + hdeACP_c --> ACP_c + 1hdec9eg3p_c
ocdcaACP_c + glyc3p_c --> 1odecg3p_c + ACP_c
octeACP_c + glyc3p_c --> ACP_c + 1odec11eg3p_c
h2o_c + g3pc_p + atp_c --> adp_c + pi_c + h_c + g3pc_c
g3pc_e <=> g3pc_p
nadp_c + glyc3p_c <=> dhap_c + nadph_c + h_c
glyc3p_c + q8_c --> q8h2_c + dhap_c
glyc3p_c + mqn8_c --> dhap_c + mql8_c
glyc3p_c + 2dmmq8_c --> dhap_c + 2dmmql8_c
g3pe_p + h2o_c + atp_c --> adp_c + pi_c + h_c + g3pe_c
g3pe_e <=> g3pe_p
h2o_c + atp_c + g3pg_p --> adp_c + pi_c + h_c + g3pg_c
g3pg_e <=> g3pg_p
h2o_c + atp_c + g3pi_p --> adp_c + g3pi_c + pi_c + h_c
g3pi_e <=> g3pi_p
h2o_c + atp_c + g3ps_p --> adp_c + pi_c + h_c + g3ps_c
g3ps_e <=> g3ps_p
h2o_c + glyc3p_c --> glyc_c + pi_c
glu5sa_c --> h2o_c + h_c + 1pyr5c_c
h_c + nadph_c + glu5p_c --> pi_c + glu5sa_c + nadp_c
h2o_c + gam6p_c --> nh4_c + f6p_c
g6p_c + nadp_c <=> h_c + nadph_c + 6pgl_c
g6p_c + h2o_c --> pi_c + glc_dsh_D_c
2.0 pi_c + g6p_p --> g6p_c + 2.0 pi_p
g6p_e <=> g6p_p
h2o_p + gal1p_p --> pi_p + gal_p
gal1p_e <=> gal1p_p
gal_dsh_bD_e <=> gal_dsh_bD_p
galct_dsh_D_c --> 5dh4dglc_c + h2o_c
galctn_dsh_L_c + nad_c --> nadh_c + h_c + tagur_c
galctn_dsh_D_c --> h2o_c + 2dh3dgal_c
galctn_dsh_L_p + h_p --> h_c + galctn_dsh_L_c
galctn_dsh_L_e <=> galctn_dsh_L_p
h_p + galctn_dsh_D_p --> h_c + galctn_dsh_D_c
galctn_dsh_D_e <=> galctn_dsh_D_p
h_p + galct_dsh_D_p <=> galct_dsh_D_c + h_c
galct_dsh_D_e <=> galct_dsh_D_p
gal_c + atp_c <=> gal1p_c + adp_c + h_c
gal_dsh_bD_p --> gal_p
h2o_c + melib_c --> glc_dsh_D_c + gal_c
udpg_c + gicolipa_c --> udp_c + gagicolipa_c + h_c
galt_p + pep_c --> galt1p_c + pyr_c
galt_e <=> galt_p
h_p + galur_p <=> galur_c + h_c
galur_e <=> galur_p
g1p_c + utp_c + h_c --> udpg_c + ppi_c
h2o_c + atp_c + gal_p --> adp_c + gal_c + pi_c + h_c
h_p + gal_p --> gal_c + h_c
gal_e <=> gal_p
gam6p_p + 2.0 pi_c --> gam6p_c + 2.0 pi_p
gam6p_e <=> gam6p_p
gam_p + pep_c --> gam6p_c + pyr_c
gam_e <=> gam_p
g3p_c + nad_c + pi_c <=> nadh_c + 13dpg_c + h_c
10fthf_c + gar_c <=> fgam_c + thf_c + h_c
for_c + atp_c + gar_c --> adp_c + pi_c + h_c + fgam_c
gbbtn_e <=> gbbtn_p
nad_c + h2o_c + gcald_c --> nadh_c + 2.0 h_c + glyclt_c
gdpddman_c --> gdpofuc_c
gdp_c + atp_c --> ppgpp_c + amp_c + h_c
h2o_c + gdpmann_c --> gdp_c + h_c + man_c
h2o_c + gdpmann_c --> man1p_c + 2.0 h_c + gmp_c
h2o_c + gdptp_c --> gtp_c + ppi_c
gdp_e <=> gdp_p
f6p_c + gln_dsh_L_c --> gam6p_c + glu_dsh_L_c
ggbutal_c + h2o_c + nadp_c <=> 2.0 h_c + nadph_c + gg4abut_c
h2o_c + gg4abut_c --> 4abut_c + glu_dsh_L_c
h2o_c + o2_c + ggptrc_c --> h2o2_c + ggbutal_c + nh4_c
ptrc_c + glu_dsh_L_c + atp_c --> adp_c + ggptrc_c + pi_c + h_c
nadh_c + sucsal_c + h_c <=> nad_c + ghb_c
ser_dsh_L_c + thf_c <=> h2o_c + gly_c + mlthf_c
atp_c + gmp_c <=> gdp_c + adp_c
glycogen_c --> bglycogen_c
glc_dsh_D_c + accoa_c <=> acglc_dsh_D_c + coa_c
glc_dsh_D_p + h2o_p + q8_c --> q8h2_c + h_p + glcn_p
glcn_p + h_p <=> glcn_c + h_c
glcn_e <=> glcn_p
glycogen_c + pi_c --> g1p_c
bglycogen_c + pi_c --> g1p_c
5dh4dglc_c --> pyr_c + 2h3oppan_c
glcr_c --> 5dh4dglc_c + h2o_c
glcr_p + h_p <=> h_c + glcr_c
glcr_e <=> glcr_p
adpglc_c --> adp_c + h_c + glycogen_c
icolipa_c + udpg_c --> udp_c + h_c + gicolipa_c
udpg_c + gagicolipa_c --> udp_c + h_c + ggagicolipa_c
ggagicolipa_c + udpg_c --> udp_c + gggagicolipa_c + h_c
glcur1p_e <=> glcur1p_p
h_p + glcur_p <=> glcur_c + h_c
glcur_e <=> glcur_p
glc_dsh_D_p + h2o_c + atp_c --> adp_c + h_c + glc_dsh_D_c + pi_c
glc_dsh_D_p + pep_c --> g6p_c + pyr_c
h_p + glc_dsh_D_p --> glc_dsh_D_c + h_c
glc_dsh_D_e <=> glc_dsh_D_p
glc_dsh_D_e --> glc_dsh_D_p
bglycogen_c --> glycogen_c
atp_c + g1p_c + h_c --> adpglc_c + ppi_c
glu_dsh_L_c + nh4_c + atp_c --> adp_c + pi_c + h_c + gln_dsh_L_c
trnagln_c + atp_c + gln_dsh_L_c --> glntrna_c + amp_c + ppi_c
h2o_c + atp_c + gln_dsh_L_p --> adp_c + pi_c + h_c + gln_dsh_L_c
gln_dsh_L_e <=> gln_dsh_L_p
nad_c + galt1p_c <=> nadh_c + h_c + tag6p_dsh_D_c
glu_dsh_L_c + atp_c --> adp_c + glu5p_c
4abut_c + glu_dsh_L_p <=> 4abut_p + glu_dsh_L_c
glu_dsh_L_c + atp_c + cys_dsh_L_c --> adp_c + pi_c + h_c + glucys_c
glu_dsh_L_c + h_c --> co2_c + 4abut_c
h2o_c + nadp_c + glu_dsh_L_c <=> h_c + nadph_c + nh4_c + akg_c
h2o_c + gln_dsh_L_c --> glu_dsh_L_c + nh4_c
h2o_p + gln_dsh_L_p --> glu_dsh_L_p + nh4_p
h2o_c + prpp_c + gln_dsh_L_c --> pram_c + ppi_c + glu_dsh_L_c
glu_dsh_D_c <=> glu_dsh_L_c
h_c + nadph_c + akg_c + gln_dsh_L_c --> nadp_c + 2.0 glu_dsh_L_c
glutrna_c + h_c + nadph_c --> nadp_c + trnaglu_c + glu1sa_c
trnaglu_c + glu_dsh_L_c + atp_c --> amp_c + ppi_c + glutrna_c
glu_dsh_L_p + h2o_c + atp_c --> pi_c + h_c + glu_dsh_L_c + adp_c
glu_dsh_L_p + h_p <=> glu_dsh_L_c + h_c
glu_dsh_L_p + na1_p --> na1_c + glu_dsh_L_c
glu_dsh_L_e <=> glu_dsh_L_p
2.0 glx_c + h_c --> 2h3oppan_c + co2_c
glyald_e <=> glyald_p
glyald_p <=> glyald_c
gly_c + accoa_c <=> 2aobut_c + coa_c
h2o_c + atp_c + glyb_p --> glyb_c + adp_c + pi_c + h_c
h_p + glyb_p --> glyb_c + h_c
glyb_e <=> glyb_p
glyc2p_p + h2o_c + atp_c --> adp_c + glyc2p_c + h_c + pi_c
glyc2p_e <=> glyc2p_p
h2o_c + atp_c + glyc3p_p --> adp_c + pi_c + h_c + glyc3p_c
glyc3p_p + pi_c --> pi_p + glyc3p_c
glyc3p_e <=> glyc3p_p
h_p + glyc_dsh_R_p <=> h_c + glyc_dsh_R_c
glyc_dsh_R_e <=> glyc_dsh_R_p
glyc_c + nad_c --> nadh_c + dha_c + h_c
atp_c + glyc_dsh_R_c --> 3pg_c + adp_c + h_c
atp_c + glyc_dsh_R_c --> adp_c + h_c + 2pg_c
gly_c + nad_c + thf_c --> nadh_c + mlthf_c + nh4_c + co2_c
nadh_c + glx_c + h_c --> glyclt_c + nad_c
glx_c + h_c + nadph_c --> nadp_c + glyclt_c
h_p + glyclt_p <=> glyclt_c + h_c
na1_p + glyclt_p --> na1_c + glyclt_c
glyclt_e <=> glyclt_p
glyclt_c + q8_c --> q8h2_c + glx_c
glyclt_c + mqn8_c --> glx_c + mql8_c
2dmmq8_c + glyclt_c --> 2dmmql8_c + glx_c
glyc_e <=> glyc_p
glyc_c <=> glyc_p
glyc_c + atp_c --> glyc3p_c + adp_c + h_c
h2o_c + lgt_dsh_S_c --> lac_dsh_D_c + h_c + gthrd_c
h2o_c + mthgxl_c --> lac_dsh_D_c + h_c
gly_c + atp_c + trnagly_c --> glytrna_c + amp_c + ppi_c
h_p + gly_p --> gly_c + h_c
h_p + gly_p <=> gly_c + h_c
na1_p + gly_p --> na1_c + gly_c
gly_e <=> gly_p
gdpmann_c --> h2o_c + gdpddman_c
gmhep1p_c + atp_c + h_c --> adphep_dsh_DD_c + ppi_c
gmhep7p_c + atp_c --> adp_c + h_c + gmhep17bp_c
h2o_c + gmhep17bp_c --> gmhep1p_c + pi_c
2.0 h_c + nadph_c + gmp_c --> nadp_c + imp_c + nh4_c
h2o_c + xmp_c + atp_c + gln_dsh_L_c --> amp_c + 2.0 h_c + ppi_c + glu_dsh_L_c + gmp_c
gmp_e <=> gmp_p
nadp_c + 6pgc_c --> co2_c + ru5p_dsh_D_c + nadph_c
glcn_c + atp_c --> adp_c + h_c + 6pgc_c
gdpofuc_c + h_c + nadph_c --> nadp_c + gdpfuc_c
h2o_c + gp4g_c --> 2.0 gdp_c + 2.0 h_c
h2o_c + g3pc_c --> glyc3p_c + h_c + chol_c
g3pc_p + h2o_p --> glyc3p_p + h_p + chol_p
h2o_c + g3pe_c --> etha_c + glyc3p_c + h_c
h2o_p + g3pe_p --> glyc3p_p + h_p + etha_p
h2o_c + g3ps_c --> glyc3p_c + h_c + ser_dsh_L_c
h2o_p + g3ps_p --> glyc3p_p + h_p + ser_dsh_L_p
h2o_c + g3pg_c --> glyc_c + glyc3p_c + h_c
h2o_p + g3pg_p --> glyc_p + glyc3p_p + h_p
h2o_c + g3pi_c --> glyc3p_c + h_c + inost_c
h2o_p + g3pi_p --> glyc3p_p + inost_p + h_p
grdp_c + ipdp_c --> frdp_c + ppi_c
grxox_c + 2.0 gthrd_c --> grxrd_c + gthox_c
atp_c + gsn_c --> adp_c + h_c + gmp_c
h_p + gsn_p --> gsn_c + h_c
gsn_e <=> gsn_p
gtspmd_c + h2o_c --> gthrd_c + spmd_c
spmd_c + atp_c + gthrd_c --> gtspmd_c + adp_c + pi_c + h_c
gthox_e <=> gthox_p
gthox_c + h_c + nadph_c <=> nadp_c + 2.0 gthrd_c
h2o2_c + 2.0 gthrd_c --> 2.0 h2o_c + gthox_c
h2o_p + gthrd_p --> cgly_p + glu_dsh_L_p
h2o_c + atp_c + gthrd_c --> adp_c + pi_c + h_c + gthrd_p
gthrd_p + h2o_c + atp_c --> adp_c + pi_c + h_c + gthrd_c
gthrd_e <=> gthrd_p
gly_c + atp_c + glucys_c --> adp_c + pi_c + h_c + gthrd_c
h2o_c + gtp_c --> for_c + h_c + ahdt_c
3.0 h2o_c + gtp_c --> for_c + 2.0 h_c + 25drapp_c + ppi_c
h2o_c + gdptp_c --> pi_c + h_c + ppgpp_c
gtp_c + atp_c --> amp_c + gdptp_c + h_c
h2o_c + gtp_c + h_c --> nh4_c + xtp_c
gtp_e <=> gtp_p
gtp_c --> 35cgmp_c + ppi_c
h2o_c + gua_c + h_c --> nh4_c + xan_c
gua_c + prpp_c --> gmp_c + ppi_c
h_p + gua_p --> gua_c + h_c
gua_e <=> gua_p
gua_p <=> gua_c
glcur_c <=> fruur_c
galur_c <=> tagur_c
h2o_p + glcur1p_p --> pi_p + glcur_p
h2o2_e <=> h2o2_p
h2o_e <=> h2o_p
h2o_p <=> h2o_c
h2s_c + 2.0 o2_c --> 2.0 h_c + so4_c
h2s_c --> h2s_p
h2s_e <=> h2s_p
h2_e <=> h2_p
h2_p <=> h2_c
nadh_c + aacoa_c + h_c <=> nad_c + 3hbcoa_c
nadh_c + 3ohcoa_c + h_c <=> nad_c + 3hhcoa_c
nadh_c + 3oocoa_c + h_c <=> nad_c + 3hocoa_c
nadh_c + 3odcoa_c + h_c <=> nad_c + 3hdcoa_c
3oddcoa_c + nadh_c + h_c <=> nad_c + 3hddcoa_c
nadh_c + h_c + 3otdcoa_c <=> nad_c + 3htdcoa_c
nadh_c + h_c + 3ohdcoa_c <=> 3hhdcoa_c + nad_c
nadh_c + 3oodcoa_c + h_c <=> 3hodcoa_c + nad_c
nad_c + 3hadpcoa_c <=> nadh_c + h_c + oxadpcoa_c
octdp_c + 4hbz_c --> 3ophb_c + ppi_c
h_p + 3hcinnm_p <=> 3hcinnm_c + h_c
3hcinnm_e <=> 3hcinnm_p
h2o_c + co2_c <=> hco3_c + h_c
amet_c + hcys_dsh_L_c --> ahcys_c + met_dsh_L_c + h_c
hcys_dsh_L_c + mmet_c --> 2.0 met_dsh_L_c + h_c
hdca_e --> hdca_p
hdcea_e --> hdcea_p
frdp_c + h2o_c + pheme_c --> ppi_c + hemeO_c
hhlipa_c + atp_c --> phhlipa_c + adp_c + h_c
atp_c + hphhlipa_c --> adp_c + h_c + phphhlipa_c
lipa_c + adphep_dsh_LD_c --> hlipa_c + adp_c + h_c
hlipa_c + adphep_dsh_LD_c --> adp_c + hhlipa_c + h_c
phhlipa_c + adphep_dsh_LD_c --> adp_c + hphhlipa_c + h_c
gggagicolipa_c + adphep_dsh_LD_c --> adp_c + colipa_c + h_c
4mhetz_c + atp_c --> adp_c + h_c + 4mpetz_c
glc_dsh_D_c + atp_c --> g6p_c + adp_c + h_c
man_c + atp_c --> adp_c + man6p_c + h_c
atp_c + fru_c --> adp_c + h_c + f6p_c
h_p + hxa_p <=> h_c + hxa_c
h2o_c + hg2_c + atp_c --> adp_c + pi_c + h_c + hg2_p
h_p + hg2_c --> hg2_p + h_c
hg2_e <=> hg2_p
h2o_c + histd_c + 2.0 nad_c --> 2.0 nadh_c + 3.0 h_c + his_dsh_L_c
h2o_c + hisp_c --> histd_c + pi_c
his_dsh_L_c + atp_c + trnahis_c --> histrna_c + amp_c + ppi_c
h2o_c + his_dsh_L_p + atp_c --> pi_c + h_c + his_dsh_L_c + adp_c
h_p + his_dsh_L_p <=> his_dsh_L_c + h_c
his_dsh_L_e <=> his_dsh_L_p
h2o_c + hkndd_c --> succ_c + op4en_c + h_c
h2o_c + hkntd_c --> fum_c + h_c + op4en_c
h2o_c + 4.0 ppbng_c --> hmbil_c + 4.0 nh4_c
4ahmmp_c + atp_c --> adp_c + h_c + 4ampm_c
hom_dsh_L_c + h_p --> hom_dsh_L_p + h_c
hom_dsh_L_e <=> hom_dsh_L_p
4h2opntn_c --> pyr_c + acald_c
6hmhpt_c + atp_c --> 6hmhptpp_c + amp_c + h_c
o2_c + dhpppn_c --> hkndd_c + h_c
h_p + 3hpppn_p <=> 3hpppn_c + h_c
3hpppn_e <=> 3hpppn_p
hpyr_c <=> 2h3oppan_c
nadh_c + hpyr_c + h_c --> nad_c + glyc_dsh_R_c
hpyr_c + nadph_c + h_c --> nadp_c + glyc_dsh_R_c
nadp_c + hom_dsh_L_c <=> aspsa_c + h_c + nadph_c
hom_dsh_L_c + atp_c --> adp_c + h_c + phom_c
hom_dsh_L_c + succoa_c --> coa_c + suchms_c
glu_dsh_L_c + imacp_c --> hisp_c + akg_c
h2o_c + nad_c + hxan_c --> nadh_c + h_c + xan_c
hxa_e <=> hxa_p
accoa_c + hxa_c --> hxcoa_c + ac_c
hxan_c + prpp_c --> imp_c + ppi_c
h2_c + q8_c + 2.0 h_c --> q8h2_c + 2.0 h_p
h2_c + mqn8_c + 2.0 h_c --> 2.0 h_p + mql8_c
h2_c + 2dmmq8_c + 2.0 h_c --> 2.0 h_p + 2dmmql8_c
h2o_c + pyam5p_c --> pi_c + pydam_c
hxan_e <=> hxan_p
hxan_p <=> hxan_c
h_e <=> h_p
iscssh_c + 2fe1s_c + iscu_c --> iscu_dsh_2fe2s_c + 4.0 h_c + iscs_c
2.0 fe2_c + 2.0 iscssh_c + fadh2_c + iscu_c --> 2.0 iscs_c + 6.0 h_c + iscu_dsh_2fe2s_c + fad_c
2.0 fe2_c + 2.0 iscssh_c + fadh2_c + iscu_dsh_2fe2s_c --> 2.0 iscs_c + 6.0 h_c + iscu_dsh_2fe2s2_c + fad_c
iscu_dsh_2fe2s_c + 4.0 h_c --> 2fe2s_c + iscu_c
iscu_dsh_2fe2s2_c + fadh2_c + 2.0 h_c --> fad_c + iscu_dsh_4fe4s_c
iscu_dsh_4fe4s_c + 4.0 h_c --> 4fe4s_c + iscu_c
nadp_c + icit_c <=> co2_c + akg_c + nadph_c
chor_c <=> ichor_c
chor_c --> ichor_c
h2o_c + ichor_c --> pyr_c + 23ddhb_c
icit_c --> succ_c + glx_c
cys_dsh_L_c + iscs_c --> iscssh_c + ala_dsh_L_c
nadh_c + 5dglcn_c + h_c <=> idon_dsh_L_c + nad_c
5dglcn_c + h_c + nadph_c --> nadp_c + idon_dsh_L_c
h_p + idon_dsh_L_p <=> idon_dsh_L_c + h_c
idon_dsh_L_e <=> idon_dsh_L_p
prlp_c + gln_dsh_L_c --> eig3p_c + glu_dsh_L_c + aicar_c + h_c
eig3p_c --> h2o_c + imacp_c
2cpr5p_c + h_c --> h2o_c + co2_c + 3ig3p_c
ile_dsh_L_c + akg_c <=> glu_dsh_L_c + 3mop_c
ile_dsh_L_c + trnaile_c + atp_c --> amp_c + ppi_c + iletrna_c
ile_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + ile_dsh_L_c
ile_dsh_L_p + h_p <=> h_c + ile_dsh_L_c
ile_dsh_L_e <=> ile_dsh_L_p
h2o_c + imp_c <=> fprica_c
h2o_c + nad_c + imp_c --> nadh_c + h_c + xmp_c
imp_e <=> imp_p
h_c + indole_c --> h_p + indole_p
h_p + indole_p <=> h_c + indole_c
indole_e <=> indole_p
inost_p + na1_p --> na1_c + inost_c
h2o_c + ins_c --> hxan_c + rib_dsh_D_c
atp_c + ins_c --> adp_c + h_c + imp_c
inost_e <=> inost_p
h_p + ins_p --> ins_c + h_c
h_p + ins_p <=> ins_c + h_c
ins_e <=> ins_p
ipdp_c <=> dmpp_c
nadh_c + h_c + h2mb4p_c --> nad_c + h2o_c + ipdp_c
nad_c + 3c2hmp_c --> nadh_c + 3c4mop_c + h_c
3c2hmp_c <=> h2o_c + 2ippm_c
h2o_c + 2ippm_c <=> 3c3hmp_c
3mob_c + h2o_c + accoa_c --> h_c + coa_c + 3c3hmp_c
isetac_p + h2o_c + atp_c --> adp_c + pi_c + h_c + isetac_c
isetac_e <=> isetac_p
h2o_c + atp_c + kdo2lipid4_c --> adp_c + pi_c + h_c + kdo2lipid4_p
h2o_c + kdo2lipid4_p + atp_c --> adp_c + pi_c + h_c + kdo2lipid4_e
nadp_c + 23dhmb_c <=> alac_dsh_S_c + h_c + nadph_c
h_c + nadph_c + 2ahbut_c <=> nadp_c + 23dhmp_c
h_c + malACP_c + acACP_c --> co2_c + ACP_c + actACP_c
h_c + malACP_c + accoa_c --> co2_c + actACP_c + coa_c
kdo_c + ctp_c --> ckdo_c + ppi_c
h2o_c + kdo8p_c --> pi_c + kdo_c
h2o_c + ara5p_c + pep_c --> kdo8p_c + pi_c
3dhgulnp_c + h_c --> co2_c + xu5p_dsh_L_c
h2o_c + k_p + atp_c --> k_c + adp_c + pi_c + h_c
k_p + h_p --> k_c + h_c
k_c + h_p --> k_p + h_c
k_e <=> k_p
lac_dsh_L_c + q8_c --> q8h2_c + pyr_c
lac_dsh_L_c + mqn8_c --> pyr_c + mql8_c
lac_dsh_L_p + h_p <=> lac_dsh_L_c + h_c
lac_dsh_L_e <=> lac_dsh_L_p
colipa_p + uLa4n_p --> udcpp_p + acolipa_p
h2o_c + lcts_c --> gal_c + glc_dsh_D_c
lcts_p + h2o_p --> gal_p + glc_dsh_D_p
h2o_c + LalaDgluMdap_c --> LalaDglu_c + 26dap_dsh_M_c
LalaDglu_e <=> LalaDglu_p
h_p + LalaDglu_p --> LalaDglu_c + h_c
LalaLglu_e <=> LalaLglu_p
h_p + LalaLglu_p --> h_c + LalaLglu_c
nadh_c + h_c + mthgxl_c --> nad_c + lald_dsh_D_c
mthgxl_c + h_c + nadph_c --> nadp_c + lald_dsh_L_c
h2o_c + LalaLglu_c --> ala_dsh_L_c + glu_dsh_L_c
nad_c + h2o_c + lald_dsh_L_c --> nadh_c + 2.0 h_c + lac_dsh_L_c
nadh_c + h_c + lald_dsh_D_c <=> 12ppd_dsh_R_c + nad_c
nadh_c + h_c + lald_dsh_L_c <=> nad_c + 12ppd_dsh_S_c
lcts_c + h_p --> lcts_p + h_c
lcts_e <=> lcts_p
lcts_p + h_p <=> lcts_c + h_c
nad_c + lac_dsh_D_c <=> nadh_c + pyr_c + h_c
lac_dsh_D_c + q8_c --> q8h2_c + pyr_c
glu_dsh_L_c + 4mop_c --> akg_c + leu_dsh_L_c
trnaleu_c + atp_c + leu_dsh_L_c --> leutrna_c + amp_c + ppi_c
leu_dsh_L_p + h2o_c + atp_c --> pi_c + h_c + adp_c + leu_dsh_L_c
h_p + leu_dsh_L_p <=> h_c + leu_dsh_L_c
leu_dsh_L_e <=> leu_dsh_L_p
mthgxl_c + gthrd_c --> lgt_dsh_S_c
lipa_cold_c + h2o_c + atp_c --> adp_c + pi_c + h_c + lipa_cold_p
h_e + hdca_e + colipa_e --> h2o_e + hacolipa_e
h_e + hdca_e + lipa_e --> h2o_e + halipa_e
lipoamp_c --> lipopb_c + amp_c
atp_c + lipoate_c --> lipoamp_c + ppi_c
lipa_c + h2o_c + atp_c --> adp_c + pi_c + h_c + lipa_p
h2o_c + lipa_p + atp_c --> adp_c + pi_c + h_c + lipa_e
ocACP_c + h_c --> ACP_c + octapb_c
nad_c + h_c + 2.0 amet_c + 4fe4s_c + octapb_c --> lipopb_c + nadh_c + 2.0 dad_dsh_5_c + 2.0 met_dsh_L_c + 2.0 fe2_c + 2fe2s_c
lipoate_p + h_p --> lipoate_c + h_c
lipoate_e <=> lipoate_p
lipidX_c + u23ga_c --> udp_c + h_c + lipidAds_c
h2o_p + 1ddecg3p_p --> glyc3p_p + ddca_p + h_p
1tdecg3p_p + h2o_p --> glyc3p_p + h_p + ttdca_p
h2o_p + 1tdec7eg3p_p --> glyc3p_p + h_p + ttdcea_p
h2o_p + 1hdecg3p_p --> glyc3p_p + h_p + hdca_p
h2o_p + 1hdec9eg3p_p --> glyc3p_p + h_p + hdcea_p
1odecg3p_p + h2o_p --> glyc3p_p + h_p + ocdca_p
h2o_p + 1odec11eg3p_p --> glyc3p_p + h_p + ocdcea_p
1agpe120_p + h2o_p --> ddca_p + h_p + g3pe_p
1agpe140_p + h2o_p --> ttdca_p + h_p + g3pe_p
1agpe141_p + h2o_p --> h_p + ttdcea_p + g3pe_p
1agpe160_p + h2o_p --> hdca_p + h_p + g3pe_p
h2o_p + 1agpe161_p --> h_p + hdcea_p + g3pe_p
1agpe180_p + h2o_p --> ocdca_p + h_p + g3pe_p
h2o_p + 1agpe181_p --> g3pe_p + h_p + ocdcea_p
h2o_p + 1agpg120_p --> ddca_p + h_p + g3pg_p
h2o_p + 1agpg140_p --> ttdca_p + h_p + g3pg_p
1agpg141_p + h2o_p --> h_p + ttdcea_p + g3pg_p
h2o_p + 1agpg160_p --> hdca_p + h_p + g3pg_p
h2o_p + 1agpg161_p --> h_p + hdcea_p + g3pg_p
1agpg180_p + h2o_p --> ocdca_p + h_p + g3pg_p
1agpg181_p + h2o_p --> g3pg_p + h_p + ocdcea_p
h2o_c + 2ddecg3p_c --> glyc3p_c + 2.0 h_c + ddca_c
h2o_c + 2tdecg3p_c --> glyc3p_c + 2.0 h_c + ttdca_c
h2o_c + 2tdec7eg3p_c --> glyc3p_c + 2.0 h_c + ttdcea_c
h2o_c + 2hdecg3p_c --> glyc3p_c + hdca_c + 2.0 h_c
2hdec9eg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + hdcea_c
h2o_c + 2odecg3p_c --> ocdca_c + glyc3p_c + 2.0 h_c
h2o_c + 2odec11eg3p_c --> ocdcea_c + glyc3p_c + 2.0 h_c
2agpe120_c + pg120_c --> apg120_c + g3pe_c
pg140_c + 2agpe140_c --> g3pe_c + apg140_c
pg141_c + 2agpe141_c --> apg141_c + g3pe_c
pg160_c + 2agpe160_c --> apg160_c + g3pe_c
2agpe161_c + pg161_c --> apg161_c + g3pe_c
2agpe180_c + pg180_c --> apg180_c + g3pe_c
2agpe181_c + pg181_c --> apg181_c + g3pe_c
2agpg120_c + pg120_c --> apg120_c + g3pg_c
2agpg140_c + pg140_c --> apg140_c + g3pg_c
pg141_c + 2agpg141_c --> apg141_c + g3pg_c
2agpg160_c + pg160_c --> apg160_c + g3pg_c
2agpg161_c + pg161_c --> apg161_c + g3pg_c
2agpg180_c + pg180_c --> apg180_c + g3pg_c
2agpg181_c + pg181_c --> apg181_c + g3pg_c
2agpe120_c + h2o_c --> g3pe_c + ddca_c + h_c
h2o_c + 2agpe140_c --> g3pe_c + h_c + ttdca_c
h2o_c + 2agpe141_c --> ttdcea_c + h_c + g3pe_c
h2o_c + 2agpe160_c --> hdca_c + g3pe_c + h_c
h2o_c + 2agpe161_c --> hdcea_c + h_c + g3pe_c
h2o_c + 2agpe180_c --> ocdca_c + g3pe_c + h_c
h2o_c + 2agpe181_c --> ocdcea_c + g3pe_c + h_c
h2o_c + 2agpg120_c --> g3pg_c + h_c + ddca_c
h2o_c + 2agpg140_c --> g3pg_c + h_c + ttdca_c
h2o_c + 2agpg141_c --> g3pg_c + ttdcea_c + h_c
2agpg160_c + h2o_c --> hdca_c + h_c + g3pg_c
h2o_c + 2agpg161_c --> hdcea_c + h_c + g3pg_c
h2o_c + 2agpg180_c --> ocdca_c + h_c + g3pg_c
h2o_c + 2agpg181_c --> ocdcea_c + h_c + g3pg_c
nadp_c + ser_dsh_L_c <=> h_c + nadph_c + 2amsa_c
lys_dsh_L_c + h_c --> 15dap_c + co2_c
lys_dsh_L_c + trnalys_c + atp_c --> amp_c + ppi_c + lystrna_c
lys_dsh_L_p + h2o_c + atp_c --> adp_c + lys_dsh_L_c + pi_c + h_c
h_p + lys_dsh_L_p --> lys_dsh_L_c + h_c
h_p + lys_dsh_L_c --> h_c + lys_dsh_L_p
lys_dsh_L_e <=> lys_dsh_L_p
lyx_dsh_L_c --> xylu_dsh_L_c
lyx_dsh_L_p + h_p --> h_c + lyx_dsh_L_c
lyx_dsh_L_e <=> lyx_dsh_L_p
nad_c + mnl1p_c <=> nadh_c + h_c + f6p_c
malACP_c + h_c --> co2_c + acACP_c
amet_c + malcoa_c --> ahcys_c + malcoame_c
mal_dsh_D_c + nad_c --> nadh_c + co2_c + pyr_c
2.0 h_p + mal_dsh_D_p --> mal_dsh_D_c + 2.0 h_c
mal_dsh_D_e <=> mal_dsh_D_p
h2o_c + glx_c + accoa_c --> coa_c + h_c + mal_dsh_L_c
malt_c + accoa_c <=> acmalt_c + coa_c
malthx_p + h2o_c + atp_c --> adp_c + pi_c + h_c + malthx_c
malthx_e --> malthx_p
atp_c + h2o_c + maltpt_p --> adp_c + pi_c + h_c + maltpt_c
maltpt_e --> maltpt_p
malttr_p + h2o_c + atp_c --> adp_c + pi_c + h_c + malttr_c
malttr_e --> malttr_p
h2o_c + atp_c + maltttr_p --> adp_c + pi_c + h_c + maltttr_c
maltttr_e --> maltttr_p
h2o_c + malt_p + atp_c --> malt_c + adp_c + pi_c + h_c
malt_p + pep_c --> pyr_c + malt6p_c
malt_e --> malt_p
2.0 h_p + mal_dsh_L_p --> 2.0 h_c + mal_dsh_L_c
3.0 h_p + mal_dsh_L_p --> 3.0 h_c + mal_dsh_L_c
h_p + mal_dsh_L_c --> mal_dsh_L_p + h_c
mal_dsh_L_e <=> mal_dsh_L_p
gdp_c + man1p_c + h_c --> pi_c + gdpmann_c
man6p_c <=> f6p_c
man6p_p + 2.0 pi_c --> 2.0 pi_p + man6p_c
man6p_e <=> man6p_p
mana_c + nad_c <=> nadh_c + fruur_c + h_c
manglyc_p + pep_c --> pyr_c + man6pglyc_c
manglyc_e <=> manglyc_p
h2o_c + man6pglyc_c --> man6p_c + glyc_dsh_R_c
man_p + pep_c --> pyr_c + man6p_c
man_e <=> man_p
2mcit_c --> h2o_c + 2mcacn_c
micit_c <=> pyr_c + succ_c
ppcoa_c + h2o_c + oaa_c --> 2mcit_c + h_c + coa_c
ACP_c + malcoa_c <=> malACP_c + coa_c
mercppyr_c + cyan_c --> pyr_c + tcynt_c + h_c
murein5p5p_p --> murein5px4p_p + ala_dsh_D_p
murein5p5p_p --> alaala_p + murein5px3p_p
murein5p5p5p_p --> 2.0 ala_dsh_D_p + murein5px4px4p_p
h2o_p + murein5px4p_p --> ala_dsh_D_p + murein4px4p_p
h2o_p + murein5px4px4p_p --> ala_dsh_D_p + murein4px4px4p_p
murein5p5p_p + h2o_p --> ala_dsh_D_p + murein5p4p_p
murein5p4p_p + h2o_p --> murein4p4p_p + ala_dsh_D_p
murein5p3p_p + h2o_p --> murein4p3p_p + ala_dsh_D_p
h2o_p + murein4px4p_p --> murein4p4p_p
h2o_p + murein3px4p_p --> murein4p3p_p
h2o_p + murein5px4p_p --> murein5p4p_p
h2o_p + murein4px4px4p_p --> murein4px4p4p_p
nad_c + mal_dsh_L_c <=> nadh_c + h_c + oaa_c
q8_c + mal_dsh_L_c --> q8h2_c + oaa_c
mqn8_c + mal_dsh_L_c --> oaa_c + mql8_c
nad_c + mal_dsh_L_c --> nadh_c + pyr_c + co2_c
nadp_c + mal_dsh_L_c --> pyr_c + co2_c + nadph_c
2mecdp_c + h_c + 2.0 flxr_c --> h2mb4p_c + h2o_c + 2.0 flxso_c
2p4c2me_c --> cmp_c + 2mecdp_c
h_p + melib_p --> melib_c + h_c
h_p + melib_c --> h_c + melib_p
melib_e <=> melib_p
meoh_e <=> meoh_p
meoh_p <=> meoh_c
2me4p_c + h_c + ctp_c --> 4c2me_c + ppi_c
h2o_c + met_dsh_L_c + atp_c --> pi_c + ppi_c + amet_c
met_dsh_D_p + h2o_c + atp_c --> adp_c + met_dsh_D_c + h_c + pi_c
met_dsh_D_e <=> met_dsh_D_p
met_dsh_L_c + h2o2_c --> h2o_c + metsox_dsh_S_dsh_L_c
met_dsh_L_c + h2o2_c --> h2o_c + metsox_dsh_R_dsh_L_c
5mthf_c + hcys_dsh_L_c --> met_dsh_L_c + h_c + thf_c
metsox_dsh_S_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + metsox_dsh_S_dsh_L_c
metsox_dsh_S_dsh_L_e <=> metsox_dsh_S_dsh_L_p
h2o_c + metsox_dsh_R_dsh_L_p + atp_c --> adp_c + pi_c + metsox_dsh_R_dsh_L_c + h_c
metsox_dsh_R_dsh_L_e <=> metsox_dsh_R_dsh_L_p
trdrd_c + metsox_dsh_S_dsh_L_c --> h2o_c + met_dsh_L_c + trdox_c
metsox_dsh_R_dsh_L_c + trdrd_c --> met_dsh_L_c + h2o_c + trdox_c
met_dsh_L_c + atp_c + trnamet_c --> mettrna_c + amp_c + ppi_c
h2o_c + met_dsh_L_p + atp_c --> adp_c + pi_c + h_c + met_dsh_L_c
met_dsh_L_e <=> met_dsh_L_p
mg2_p + 2.0 h_c <=> 2.0 h_p + mg2_c
mg2_e <=> mg2_p
mg2_p --> mg2_c
h2o_c + atp_c + mg2_p --> adp_c + pi_c + h_c + mg2_c
dhap_c --> pi_c + mthgxl_c
h2o_c + mi1p_dsh_D_c --> pi_c + inost_c
h2o_c + 2mcacn_c <=> micit_c
mincyc_e <=> mincyc_p
mincyc_p + h_p --> h_c + mincyc_e
minohp_e --> minohp_p
h2o_p + murein5px4p_p --> alaala_p + murein3px4p_p
murein4p4p_p + h2o_p --> murein4p3p_p + ala_dsh_D_p
murein5p5p_p + h2o_p --> alaala_p + murein5p3p_p
h2o_p + murein4p3p_p --> ala_dsh_D_p + murein3p3p_p
h2o_p + murein5px3p_p --> murein3px3p_p + alaala_p
murein3px3p_p + h2o_p --> murein3p3p_p
h2o_p + murein5px3p_p --> murein5p3p_p
h2o_c + malttr_c --> glc_dsh_D_c + malt_c
h2o_c + maltttr_c --> glc_dsh_D_c + malttr_c
h2o_c + maltpt_c --> glc_dsh_D_c + maltttr_c
h2o_c + malthx_c --> glc_dsh_D_c + maltpt_c
h2o_c + malthp_c --> glc_dsh_D_c + malthx_c
murein4p4p_p --> 2.0 anhgm4p_p
murein4p3p_p --> anhgm4p_p + anhgm3p_p
murein3p3p_p --> 2.0 anhgm3p_p
murein4px4p4p_p --> anhgm4p_p + murein4px4p_p
maltpt_c + pi_c <=> maltttr_c + g1p_c
malthx_c + pi_c <=> maltpt_c + g1p_c
malthp_c + pi_c <=> malthx_c + g1p_c
mmcoa_dsh_S_c + h_c --> co2_c + ppcoa_c
mmet_p + h_p --> h_c + mmet_c
mmet_e <=> mmet_p
succoa_c --> mmcoa_dsh_S_c
mn2_c + h_p --> mn2_p + h_c
mn2_p --> mn2_c
h2o_c + man6p_c --> pi_c + man_c
mnl_p + pep_c --> pyr_c + mnl1p_c
mnl_e <=> mnl_p
mana_c --> 2ddglcn_c + h2o_c
h_p + mn2_p --> h_c + mn2_c
mn2_e <=> mn2_p
nadh_c + iscssh_c + moadamp_c --> nad_c + iscs_c + moadcosh_c + amp_c
ckdo_c + lipidA_c --> cmp_c + h_c + kdolipid4_c
ckdo_c + kdolipid4_c --> cmp_c + kdo2lipid4_c + h_c
phphhlipa_c + ckdo_c --> cmp_c + kphphhlipa_c + h_c
h2o_c + atp_c + mobd_p --> adp_c + pi_c + h_c + mobd_c
mobd_e <=> mobd_p
moco_c + h_c + ctp_c --> mococdp_c + ppi_c
2.0 h_c + mptamp_c + mobd_c --> amp_c + h2o_c + cu2_c + moco_c
gtp_c + h_c + moco_c --> mocogdp_c + ppi_c
h2o_c + mlthf_c + 3mob_c --> 2dhp_c + thf_c
o2_c + mal_dsh_L_c <=> h2o2_c + oaa_c
mpt_c + atp_c + h_c --> mptamp_c + ppi_c
2.0 uaagmda_c --> 2.0 udcpdp_c + murein5p5p_p + 2.0 h_c
murein5p5p_p + uaagmda_c --> udcpdp_c + murein5p5p5p_p + h_c
2.0 moadcosh_c + cu2_c + cpmp_c --> 5.0 h_c + 2.0 moadcoo_c + mpt_c
moadcoo_c + atp_c + h_c --> moadamp_c + ppi_c
msa_c + nadph_c + h_c --> nadp_c + 3hpp_c
mso3_p + atp_c + h2o_c --> adp_c + pi_c + h_c + mso3_c
mso3_e <=> mso3_p
5mta_c + h2o_c --> 5mtr_c + ade_c
h2o_c + methf_c <=> 10fthf_c + h_c
mlthf_c + nadp_c <=> methf_c + nadph_c
mlthf_c + nadh_c + 2.0 h_c --> nad_c + 5mthf_c
h2o_c + mdhdhf_c --> mththf_c
h2o_c + o2_c + Nmtrp_c --> h2o2_c + fald_c + trp_dsh_L_c
n2o_e <=> n2o_p
n2o_p <=> n2o_c
h2o_c + acg5sa_c --> ac_c + glu5sa_c
nac_e <=> nac_p
nac_p --> nac_c
h2o_c + nad_c --> nmn_c + amp_c + 2.0 h_c
nadh_c + mqn8_c + h_c --> nad_c + mql8_c
nadh_c + 4.0 h_c + q8_c --> q8h2_c + 3.0 h_p + nad_c
nadh_c + mqn8_c + 4.0 h_c --> 3.0 h_p + nad_c + mql8_c
nadh_c + 4.0 h_c + 2dmmq8_c --> 3.0 h_p + nad_c + 2dmmql8_c
nadh_c + q8_c + h_c --> q8h2_c + nad_c
nadh_c + 2dmmq8_c + h_c --> nad_c + 2dmmql8_c
nad_c + atp_c --> nadp_c + adp_c + h_c
h2o_c + nad_c --> adprib_c + ncam_c + h_c
q8_c + h_c + nadph_c --> nadp_c + q8h2_c
mqn8_c + h_c + nadph_c --> nadp_c + mql8_c
2dmmq8_c + h_c + nadph_c --> nadp_c + 2dmmql8_c
h2o_c + nadp_c --> nad_c + pi_c
nh4_c + atp_c + dnad_c --> nad_c + amp_c + h_c + ppi_c
nad_c + nadph_c --> nadh_c + nadp_c
h2o_c + nac_c + atp_c + prpp_c --> adp_c + ppi_c + nicrnt_c + pi_c
2.0 na1_c + 3.0 h_p --> 3.0 h_c + 2.0 na1_p
na1_c + 2.0 h_p --> 2.0 h_c + na1_p
na1_c + h_p --> h_c + na1_p
na1_e <=> na1_p
gdp_c + atp_c <=> gtp_c + adp_c
udp_c + atp_c <=> adp_c + utp_c
atp_c + cdp_c <=> adp_c + ctp_c
atp_c + dtdp_c <=> dttp_c + adp_c
atp_c + dgdp_c <=> adp_c + dgtp_c
atp_c + dudp_c <=> adp_c + dutp_c
atp_c + dcdp_c <=> adp_c + dctp_c
dadp_c + atp_c <=> datp_c + adp_c
nh4_e <=> nh4_p
nh4_p <=> nh4_c
nadh_c + 2.0 no_c + h_c --> nad_c + n2o_c + h2o_c
ni2_c + h2o_c + atp_c --> adp_c + pi_c + h_c + ni2_p
ni2_c + h_p --> ni2_p + h_c
ni2_e <=> ni2_p
ni2_p --> ni2_c
ni2_p + h2o_c + atp_c --> ni2_c + adp_c + pi_c + h_c
nmn_c + h_c + atp_c --> ppi_c + nad_c
h2o_c + nmn_c --> nh4_c + nicrnt_c
h2o_c + nmn_c --> r5p_c + ncam_c + h_c
nmn_p --> nmn_c
h2o_c + nmn_p --> r5p_c + ncam_c + h_c
nmn_e <=> nmn_p
h2o_c + ncam_c --> nh4_c + nac_c
nicrnt_c + atp_c + h_c <=> dnad_c + ppi_c
nicrnt_c + dmbzid_c --> nac_c + h_c + 5prdmbz_c
2.0 h_c + prpp_c + quln_c --> co2_c + ppi_c + nicrnt_c
no2_p + h_p <=> h_c + no2_c
no2_e <=> no2_p
q8h2_c + no3_p --> no2_p + h2o_p + q8_c
q8h2_c + 2.0 h_c + no3_c --> 2.0 h_p + h2o_c + q8_c + no2_c
no3_p + mql8_c --> no2_p + h2o_p + mqn8_c
2.0 h_c + no3_c + mql8_c --> 2.0 h_p + mqn8_c + h2o_c + no2_c
no3_p + no2_c --> no2_p + no3_c
no3_e <=> no3_p
nadh_c + 2.0 no_c + 2.0 o2_c --> h_c + 2.0 no3_c + nad_c
2.0 no_c + 2.0 o2_c + nadph_c --> h_c + 2.0 no3_c + nadp_c
novbcn_e <=> novbcn_p
h_p + novbcn_p --> h_c + novbcn_e
no_e <=> no_p
no_p <=> no_c
h2o_c + dump_c --> duri_c + pi_c
h2o_c + xmp_c --> pi_c + xtsn_c
h2o_p + xmp_p --> pi_p + xtsn_p
h2o_c + imp_c --> ins_c + pi_c
h2o_p + imp_p --> pi_p + ins_p
h2o_c + dimp_c --> din_c + pi_c
dimp_p + h2o_p --> pi_p + din_p
dump_p + h2o_p --> pi_p + duri_p
h2o_c + ump_c --> uri_c + pi_c
h2o_p + ump_p --> pi_p + uri_p
h2o_c + dcmp_c --> pi_c + dcyt_c
h2o_p + dcmp_p --> pi_p + dcyt_p
h2o_c + cmp_c --> cytd_c + pi_c
h2o_p + cmp_p --> pi_p + cytd_p
h2o_c + dtmp_c --> thymd_c + pi_c
h2o_p + dtmp_p --> pi_p + thymd_p
h2o_c + damp_c --> pi_c + dad_dsh_2_c
h2o_p + damp_p --> pi_p + dad_dsh_2_p
h2o_c + amp_c --> adn_c + pi_c
h2o_p + amp_p --> adn_p + pi_p
h2o_c + dgmp_c --> dgsn_c + pi_c
h2o_p + dgmp_p --> pi_p + dgsn_p
h2o_c + gmp_c --> pi_c + gsn_c
h2o_p + gmp_p --> pi_p + gsn_p
h2o_c + atp_c --> adp_c + pi_c + h_c
h2o_c + itp_c --> idp_c + h_c + pi_c
ditp_c + h2o_c --> pi_c + didp_c + h_c
h2o_c + xtp_c --> pi_c + h_c + xdp_c
h2o_c + gtp_c --> gdp_c + pi_c + h_c
gtp_p + h2o_p --> pi_p + gdp_p + h_p
h2o_c + ctp_c --> cdp_c + pi_c + h_c
h2o_c + dgtp_c --> dgmp_c + h_c + ppi_c
ditp_c + h2o_c --> dimp_c + h_c + ppi_c
h2o_c + xtp_c --> xmp_c + h_c + ppi_c
h2o_c + gtp_c --> gmp_c + h_c + ppi_c
h2o_c + dctp_c --> dcmp_c + h_c + ppi_c
h2o_c + ctp_c --> cmp_c + h_c + ppi_c
h2o_c + datp_c --> damp_c + h_c + ppi_c
h2o_c + atp_c --> amp_c + h_c + ppi_c
dttp_c + h2o_c --> dtmp_c + h_c + ppi_c
h2o_c + utp_c --> h_c + ump_c + ppi_c
h2o_c + itp_c --> imp_c + h_c + ppi_c
h2o_c + dgtp_c --> dgsn_c + pppi_c
h2o_c + gtp_c --> pppi_c + gsn_c
3.0 nadh_c + 5.0 h_c + no2_c --> 3.0 nad_c + 2.0 h2o_c + nh4_c
3.0 q8h2_c + 2.0 h_p + no2_p --> nh4_p + 2.0 h2o_p + 3.0 q8_c
2.0 h_p + no2_p + 3.0 mql8_c --> 3.0 mqn8_c + nh4_p + 2.0 h2o_p
h2o_c + atp_c + o16a4colipa_p --> adp_c + pi_c + h_c + o16a4colipa_e
colipa_p + o16a4und_p --> udcpdp_p + h_p + o16a4colipa_p
2.0 o16aund_p --> udcpdp_p + h_p + o16a2und_p
o16aund_p + o16a2und_p --> o16a3und_p + udcpdp_p + h_p
o16a3und_p + o16aund_p --> udcpdp_p + h_p + o16a4und_p
ragund_c + accoa_c --> aragund_c + coa_c
o16aund_c --> o16aund_p
garagund_c + udpgalfur_c --> udp_c + h_c + gfgaragund_c
aragund_c + udpg_c --> garagund_c + udp_c + h_c
udpg_c + gfgaragund_c --> udp_c + h_c + o16aund_c
o2s_e <=> o2s_p
o2_e <=> o2_p
o2_p <=> o2_c
oaa_c + h_c --> pyr_c + co2_c
2obut_c + coa_c --> for_c + ppcoa_c
cbp_c + orn_c <=> citr_dsh_L_c + pi_c + h_c
ocdca_e --> ocdca_p
ocdcea_e --> ocdcea_p
octa_e <=> octa_p
frdp_c + 5.0 ipdp_c --> octdp_c + 5.0 ppi_c
octa_c + h_c + atp_c --> amp_c + ppi_c + octapb_c
hgmeACP_c --> h2o_c + egmeACP_c
nadph_c + h_c + ogmeACP_c --> nadp_c + hgmeACP_c
h_c + malACP_c + malcoame_c --> co2_c + coa_c + ogmeACP_c
glu_dsh_L_c + ohpb_c <=> akg_c + phthr_c
2ohph_c + amet_c --> ahcys_c + h_c + 2omph_c
2ombzl_c + amet_c --> ahcys_c + 2ommbl_c + h_c
3c4mop_c + h_c --> co2_c + 4mop_c
2ommbl_c + 0.5 o2_c --> 2omhmbl_c
2ommbl_c + nad_c + 3.0 h2o_c + 2.0 atp_c --> nadh_c + 2.0 adp_c + 2.0 pi_c + 3.0 h_c + 2omhmbl_c
orot5p_c + h_c --> co2_c + ump_c
0.5 o2_c + 2omph_c --> 2ombzl_c
nad_c + 3.0 h2o_c + 2.0 atp_c + 2omph_c --> nadh_c + 2.0 adp_c + 2.0 pi_c + 3.0 h_c + 2ombzl_c
h2o_c + op4en_c --> 4h2opntn_c
3ophb_c + h_c --> 2oph_c + co2_c
2oph_c + 0.5 o2_c --> 2ohph_c
nad_c + 3.0 h2o_c + 2oph_c + 2.0 atp_c --> nadh_c + 2ohph_c + 2.0 adp_c + 2.0 pi_c + 3.0 h_c
hpmeACP_c --> h2o_c + epmeACP_c
nadph_c + h_c + opmeACP_c --> nadp_c + hpmeACP_c
h_c + gmeACP_c + malACP_c --> co2_c + ACP_c + opmeACP_c
h_c + orn_c --> co2_c + ptrc_c
h2o_c + orn_p + atp_c --> adp_c + pi_c + h_c + orn_c
orn_e <=> orn_p
2.0 h_p + orot_p --> orot_c + 2.0 h_c
orot_e <=> orot_p
orot5p_c + ppi_c <=> orot_c + prpp_c
oxur_c + pi_c --> oxam_c + cbp_c
oxalcoa_c + h_c --> co2_c + forcoa_c
2.0 h2o_c + nadp_c + 2oxpaccoa_c --> 3oxdhscoa_c + 2.0 h_c + nadph_c
3oxdhscoa_c + coa_c --> 23dhacoa_c + accoa_c
nad_c + 2.0 h2o_c + 1pyr5c_c --> nadh_c + h_c + glu_dsh_L_c
2.0 h_c + nadph_c + 1pyr5c_c --> nadp_c + pro_dsh_L_c
pa120_c + h2o_c + atp_c --> adp_c + pi_c + pa120_p + h_c
h2o_c + atp_c + pa140_c --> pa140_p + adp_c + pi_c + h_c
pa141_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pa141_p
pa160_c + h2o_c + atp_c --> adp_c + pi_c + pa160_p + h_c
h2o_c + atp_c + pa161_c --> adp_c + pi_c + h_c + pa161_p
pa180_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pa180_p
h2o_c + pa181_c + atp_c --> adp_c + pi_c + h_c + pa181_p
h_p + pacald_p <=> pacald_c + h_c
pacald_e <=> pacald_p
o2_c + h_c + nadph_c + phaccoa_c --> h2o_c + rephaccoa_c + nadp_c
pac_c + atp_c + coa_c --> amp_c + ppi_c + phaccoa_c
pant_dsh_R_c + atp_c + ala_dsh_B_c --> amp_c + h_c + ppi_c + pnto_dsh_R_c
h2o_c + pa120_c --> pi_c + 12dgr120_c
h2o_p + pa120_p --> pi_p + 12dgr120_p
h2o_c + pa140_c --> 12dgr140_c + pi_c
pa140_p + h2o_p --> pi_p + 12dgr140_p
h2o_c + pa141_c --> pi_c + 12dgr141_c
h2o_p + pa141_p --> pi_p + 12dgr141_p
h2o_c + pa160_c --> pi_c + 12dgr160_c
h2o_p + pa160_p --> pi_p + 12dgr160_p
h2o_c + pa161_c --> 12dgr161_c + pi_c
h2o_p + pa161_p --> 12dgr161_p + pi_p
h2o_c + pa180_c --> pi_c + 12dgr180_c
h2o_p + pa180_p --> pi_p + 12dgr180_p
h2o_c + pa181_c --> pi_c + 12dgr181_c
h2o_p + pa181_p --> pi_p + 12dgr181_p
ugmda_c + udcpp_c --> uagmda_c + ump_c
trdrd_c + paps_c --> pap_c + trdox_c + 2.0 h_c + so3_c
grxrd_c + paps_c --> pap_c + grxox_c + 2.0 h_c + so3_c
h2o_c + camp_c --> amp_c + h_c
h2o_c + 35cgmp_c --> h_c + gmp_c
nad_c + pyr_c + coa_c --> nadh_c + co2_c + accoa_c
pdx5p_c + nad_c --> nadh_c + h_c + pydx5p_c
pdx5p_c + o2_c --> h2o2_c + pydx5p_c
nad_c + dxyl5p_c + phthr_c --> nadh_c + pdx5p_c + co2_c + pi_c + 2.0 h2o_c + h_c
h2o_c + pdx5p_c --> pydxn_c + pi_c
h2o_c + atp_c + pe120_c --> adp_c + pi_c + h_c + pe120_p
h2o_c + pe140_c + atp_c --> pe140_p + adp_c + pi_c + h_c
pe141_c + h2o_c + atp_c --> pi_c + h_c + adp_c + pe141_p
pe160_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pe160_p
h2o_c + pe161_c + atp_c --> adp_c + pe161_p + h_c + pi_c
pe180_c + atp_c + h2o_c --> adp_c + pi_c + h_c + pe180_p
h2o_c + pe181_c + atp_c --> adp_c + pi_c + h_c + pe181_p
o2_p + peamn_p + h2o_p --> pacald_p + nh4_p + h2o2_p
peamn_e <=> peamn_p
nad_c + 4per_c <=> nadh_c + h_c + ohpb_c
lipa_p + pe161_p --> 12dgr161_p + enlipa_p
lipa_p + pe181_p --> enlipa_p + 12dgr181_p
atp_c + f6p_c --> adp_c + h_c + fdp_c
atp_c + tag6p_dsh_D_c --> adp_c + h_c + tagdp_dsh_D_c
atp_c + s7p_c --> s17bp_c + adp_c + h_c
pyr_c + coa_c --> for_c + accoa_c
pg120_c + h2o_c + atp_c --> pg120_p + adp_c + pi_c + h_c
h2o_c + atp_c + pg140_c --> adp_c + pi_c + h_c + pg140_p
h2o_c + pg141_c + atp_c --> adp_c + pi_c + h_c + pg141_p
atp_c + h2o_c + pg160_c --> adp_c + pi_c + h_c + pg160_p
h2o_c + atp_c + pg161_c --> adp_c + pi_c + h_c + pg161_p
pg180_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pg180_p
h2o_c + atp_c + pg181_c --> adp_c + pg181_p + pi_c + h_c
gam1p_c <=> gam6p_c
3pg_c + nad_c --> nadh_c + h_c + 3php_c
g6p_c <=> f6p_c
3pg_c + atp_c <=> 13dpg_c + adp_c
h2o_c + 6pgl_c --> h_c + 6pgc_c
h2o_c + 2pglyc_c --> glyclt_c + pi_c
2pg_c <=> 3pg_c
g1p_c <=> g6p_c
h2o_c + pgp120_c + atp_c --> adp_c + pi_c + h_c + pgp120_p
atp_c + h2o_c + pgp140_c --> pgp140_p + adp_c + pi_c + h_c
h2o_c + pgp141_c + atp_c --> pi_c + h_c + pgp141_p + adp_c
pgp160_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pgp160_p
h2o_c + pgp161_c + atp_c --> adp_c + pi_c + h_c + pgp161_p
pgp180_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pgp180_p
pgp181_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pgp181_p
h2o_c + pgp120_c --> pi_c + pg120_c
h2o_p + pgp120_p --> pg120_p + pi_p
h2o_c + pgp140_c --> pi_c + pg140_c
pgp140_p + h2o_p --> pi_p + pg140_p
h2o_c + pgp141_c --> pg141_c + pi_c
pgp141_p + h2o_p --> pi_p + pg141_p
h2o_c + pgp160_c --> pg160_c + pi_c
h2o_p + pgp160_p --> pi_p + pg160_p
h2o_c + pgp161_c --> pi_c + pg161_c
h2o_p + pgp161_p --> pg161_p + pi_p
h2o_c + pgp180_c --> pi_c + pg180_c
h2o_p + pgp180_p --> pi_p + pg180_p
h2o_c + pgp181_c --> pi_c + pg181_c
h2o_p + pgp181_p --> pi_p + pg181_p
cdpdddecg_c + glyc3p_c --> pgp120_c + cmp_c + h_c
cdpdtdecg_c + glyc3p_c --> pgp140_c + cmp_c + h_c
glyc3p_c + cdpdtdec7eg_c --> pgp141_c + cmp_c + h_c
glyc3p_c + cdpdhdecg_c --> pgp160_c + cmp_c + h_c
glyc3p_c + cdpdhdec9eg_c --> pgp161_c + cmp_c + h_c
cdpdodecg_c + glyc3p_c --> cmp_c + h_c + pgp180_c
cdpdodec11eg_c + glyc3p_c --> cmp_c + h_c + pgp181_c
pheme_c + h2o_c + atp_c --> adp_c + pi_c + h_c + pheme_p
pheme_p --> pheme_e
akg_c + phe_dsh_L_c <=> glu_dsh_L_c + phpyr_c
trnaphe_c + atp_c + phe_dsh_L_c --> amp_c + phetrna_c + ppi_c
phe_dsh_L_p + h_p <=> h_c + phe_dsh_L_c
phe_dsh_L_e <=> phe_dsh_L_p
6.0 h2o_p + minohp_p --> inost_p + 6.0 pi_p
pi_p + h_p <=> pi_c + h_c
pi_e <=> pi_p
h2o_c + pi_p + atp_c --> adp_c + 2.0 pi_c + h_c
h2o_p + pa120_p --> 2ddecg3p_p + ddca_p
pa140_p + h2o_p --> ttdca_p + 2tdecg3p_p
h2o_p + pa141_p --> ttdcea_p + 2tdec7eg3p_p
h2o_p + pa160_p --> hdca_p + 2hdecg3p_p
h2o_p + pa161_p --> 2hdec9eg3p_p + hdcea_p
h2o_p + pa180_p --> 2odecg3p_p + ocdca_p
h2o_p + pa181_p --> 2odec11eg3p_p + ocdcea_p
h2o_p + pe120_p --> 2agpe120_p + h_p + ddca_p
pe140_p + h2o_p --> 2agpe140_p + h_p + ttdca_p
h2o_p + pe141_p --> 2agpe141_p + h_p + ttdcea_p
pe160_p + h2o_p --> 2agpe160_p + hdca_p + h_p
h2o_p + pe161_p --> h_p + hdcea_p + 2agpe161_p
h2o_p + pe180_p --> ocdca_p + h_p + 2agpe180_p
pe181_p + h2o_p --> h_p + 2agpe181_p + ocdcea_p
pg120_p + h2o_p --> 2agpg120_p + h_p + ddca_p
h2o_p + pg140_p --> ttdca_p + 2agpg140_p + h_p
h2o_p + pg141_p --> 2agpg141_p + h_p + ttdcea_p
pg160_p + h2o_p --> hdca_p + 2agpg160_p + h_p
pg161_p + h2o_p --> 2agpg161_p + h_p + hdcea_p
h2o_p + pg180_p --> 2agpg180_p + h_p + ocdca_p
h2o_p + pg181_p --> 2agpg181_p + h_p + ocdcea_p
h2o_p + pa120_p --> h_p + 1ddecg3p_p + ddca_p
pa140_p + h2o_p --> 1tdecg3p_p + h_p + ttdca_p
h2o_p + pa141_p --> h_p + ttdcea_p + 1tdec7eg3p_p
pa160_p + h2o_p --> 1hdecg3p_p + h_p + hdca_p
h2o_p + pa161_p --> 1hdec9eg3p_p + h_p + hdcea_p
h2o_p + pa180_p --> ocdca_p + 1odecg3p_p + h_p
h2o_p + pa181_p --> h_p + 1odec11eg3p_p + ocdcea_p
h2o_p + pe120_p --> 1agpe120_p + h_p + ddca_p
pe140_p + h2o_p --> 1agpe140_p + h_p + ttdca_p
h2o_p + pe141_p --> 1agpe141_p + h_p + ttdcea_p
pe160_p + h2o_p --> hdca_p + h_p + 1agpe160_p
h2o_p + pe161_p --> h_p + 1agpe161_p + hdcea_p
h2o_p + pe180_p --> 1agpe180_p + h_p + ocdca_p
h2o_p + pe181_p --> 1agpe181_p + h_p + ocdcea_p
pg120_p + h2o_p --> 1agpg120_p + ddca_p + h_p
h2o_p + pg140_p --> ttdca_p + h_p + 1agpg140_p
pg141_p + h2o_p --> 1agpg141_p + h_p + ttdcea_p
pg160_p + h2o_p --> hdca_p + h_p + 1agpg160_p
pg161_p + h2o_p --> h_p + 1agpg161_p + hdcea_p
h2o_p + pg180_p --> 1agpg180_p + h_p + ocdca_p
h2o_p + pg181_p --> 1agpg181_p + h_p + ocdcea_p
man1p_c <=> man6p_c
h2o_c + 5aprbu_c --> pi_c + 4r5au_c
h2o_c + pmeACP_c --> pimACP_c + meoh_c
atp_c + 4ampm_c --> 2mahmp_c + adp_c
atp_c + pnto_dsh_R_c --> adp_c + 4ppan_c + h_c
pnto_dsh_R_p + na1_p --> na1_c + pnto_dsh_R_c
pnto_dsh_R_e <=> pnto_dsh_R_p
nadh_c + poaac_c --> h2o_c + nad_c + 3amac_c
2.0 flxso_c + pyr_c + coa_c <=> co2_c + h_c + 2.0 flxr_c + accoa_c
h2o_c + pyr_c + q8_c --> q8h2_c + co2_c + ac_c
h2o_c + ppi_c --> 2.0 pi_c + h_c
h2o_c + pppi_c --> pi_c + h_c + ppi_c
ppap_c + adp_c <=> ppa_c + atp_c
ppal_e <=> ppal_p
ppal_c <=> ppal_p
na1_p + ppa_p --> na1_c + ppa_c
ppa_e <=> ppa_p
2.0 5aop_c --> 2.0 h2o_c + ppbng_c + h_c
co2_c + h2o_c + pep_c --> pi_c + h_c + oaa_c
4ppcys_c + h_c --> pan4p_c + co2_c
atp_c + oaa_c --> adp_c + co2_c + pep_c
ppcoa_c + succ_c --> ppa_c + succoa_c
h2o_c + ppgpp_c --> gdp_c + ppi_c
atp_c + ppi_c <=> adp_c + pppi_c
atp_c + pi_c <=> adp_c + ppi_c
r1p_c <=> r5p_c
2dr1p_c <=> 2dr5p_c
4ppan_c + ctp_c + cys_dsh_L_c --> h_c + ppi_c + 4ppcys_c + cmp_c
nad_c + pphn_c --> nadh_c + 34hpp_c + co2_c
pphn_c + h_c --> h2o_c + co2_c + phpyr_c
1.5 o2_c + pppg9_c --> 3.0 h2o_c + ppp9_c
3.0 fum_c + pppg9_c --> 3.0 succ_c + ppp9_c
nadh_c + pppn_c + h_c + o2_c --> nad_c + cechddd_c
h_p + pppn_p <=> pppn_c + h_c
pppn_e <=> pppn_p
h2o_c + pyr_c + atp_c --> amp_c + 2.0 h_c + pi_c + pep_c
h2o_p + ppt_p --> pi_p + h2_p
ppt_e <=> ppt_p
gly_c + pram_c + atp_c <=> adp_c + pi_c + h_c + gar_c
fpram_c + atp_c --> adp_c + pi_c + 2.0 h_c + air_c
pran_c --> 2cpr5p_c
h2o_c + prbamp_c --> prfp_c
5aizc_c + asp_dsh_L_c + atp_c --> adp_c + pi_c + 25aics_c + h_c
h2o_c + prbatp_c --> prbamp_c + h_c + ppi_c
fgam_c + h2o_c + atp_c + gln_dsh_L_c --> adp_c + pi_c + h_c + fpram_c + glu_dsh_L_c
prfp_c <=> prlp_c
pro_dsh_L_c + fad_c --> fadh2_c + h_c + 1pyr5c_c
progly_p + h2o_c + atp_c --> progly_c + adp_c + pi_c + h_c
progly_e <=> progly_p
trnapro_c + pro_dsh_L_c + atp_c --> protrna_c + ppi_c + amp_c
atp_c + h2o_c + pro_dsh_L_p --> adp_c + pi_c + h_c + pro_dsh_L_c
h_p + pro_dsh_L_p <=> h_c + pro_dsh_L_c
pro_dsh_L_p + na1_p --> na1_c + pro_dsh_L_c
pro_dsh_L_e <=> pro_dsh_L_p
atp_c + r5p_c <=> amp_c + prpp_c + h_c
h_p + psclys_p --> psclys_c + h_c
psclys_e <=> psclys_p
skm5p_c + pep_c <=> pi_c + 3psme_c
h_c + ps120_c --> co2_c + pe120_c
ps140_c + h_c --> pe140_c + co2_c
ps141_c + h_c --> co2_c + pe141_c
ps160_c + h_c --> pe160_c + co2_c
ps161_c + h_c --> pe161_c + co2_c
ps180_c + h_c --> pe180_c + co2_c
ps181_c + h_c --> pe181_c + co2_c
glu_dsh_L_c + 3php_c --> pser_dsh_L_c + akg_c
pser_dsh_L_e <=> pser_dsh_L_p
h2o_c + pser_dsh_L_c --> pi_c + ser_dsh_L_c
h2o_p + pser_dsh_L_p --> pi_p + ser_dsh_L_p
ser_dsh_L_c + cdpdddecg_c --> cmp_c + h_c + ps120_c
cdpdtdecg_c + ser_dsh_L_c --> cmp_c + h_c + ps140_c
ser_dsh_L_c + cdpdtdec7eg_c --> cmp_c + h_c + ps141_c
ser_dsh_L_c + cdpdhdecg_c --> ps160_c + cmp_c + h_c
ser_dsh_L_c + cdpdhdec9eg_c --> cmp_c + ps161_c + h_c
cdpdodecg_c + ser_dsh_L_c --> cmp_c + h_c + ps180_c
ser_dsh_L_c + cdpdodec11eg_c --> cmp_c + ps181_c + h_c
pi_c + ppcoa_c --> ppap_c + coa_c
pi_c + accoa_c <=> actp_c + coa_c
thrp_p + h2o_p --> pi_p + thr_dsh_L_p
pan4p_c + atp_c + h_c --> dpcoa_c + ppi_c
ptrc_p + orn_c <=> ptrc_c + orn_p
ptrc_c + akg_c --> glu_dsh_L_c + 4abutn_c
atp_c + h2o_c + ptrc_p --> adp_c + pi_c + h_c + ptrc_c
ptrc_p + h_p --> ptrc_c + h_c
ptrc_e <=> ptrc_p
adn_c + pi_c <=> ade_c + r1p_c
pi_c + dad_dsh_2_c <=> ade_c + 2dr1p_c
pi_c + gsn_c <=> r1p_c + gua_c
dgsn_c + pi_c <=> gua_c + 2dr1p_c
ins_c + pi_c <=> hxan_c + r1p_c
din_c + pi_c <=> hxan_c + 2dr1p_c
pi_c + xtsn_c <=> xan_c + r1p_c
o2_c + h2o_c + pyam5p_c --> h2o2_c + pydx5p_c + nh4_c
atp_c + pydam_c --> pyam5p_c + adp_c + h_c
pydam_e <=> pydam_p
pydam_p --> pydam_c
pydx_c + atp_c --> adp_c + h_c + pydx5p_c
pydxn_c + atp_c --> pdx5p_c + adp_c + h_c
pydxn_e <=> pydxn_p
pydxn_p --> pydxn_c
h2o_c + pydx5p_c --> pydx_c + pi_c
pydx_e <=> pydx_p
pydx_p --> pydx_c
adp_c + h_c + pep_c --> pyr_c + atp_c
uri_c + pi_c <=> r1p_c + ura_c
nadh_c + h_c + o2_c + ura_c --> nad_c + uracp_c
h_p + pyr_p <=> pyr_c + h_c
pyr_e <=> pyr_p
q8h2_c + 2.0 o2_c --> 2.0 o2s_c + q8_c + 2.0 h_c
2.0 o2_c + mql8_c --> mqn8_c + 2.0 o2s_c + 2.0 h_c
quin_e <=> quin_p
quin_p <=> quin_c
quin_c + nad_c <=> nadh_c + 3dhq_c + 2.0 h_c
iasp_c + dhap_c --> 2.0 h2o_c + pi_c + quln_c
atp_c + r15bp_c --> adp_c + prpp_c
r1p_c + atp_c --> adp_c + h_c + r15bp_c
h2o_c + r5p_c --> rib_dsh_D_c + pi_c
h2o_p + r5p_p --> pi_p + rib_dsh_D_p
r5p_e <=> r5p_p
atp_c + ribflv_c --> adp_c + fmn_c + h_c
4r5au_c + db4p_c --> 2.0 h2o_c + pi_c + dmlz_c
2.0 dmlz_c --> ribflv_c + 4r5au_c
rib_dsh_D_c + atp_c --> adp_c + h_c + r5p_c
atp_c + rbl_dsh_L_c --> adp_c + h_c + ru5p_dsh_L_c
ru5p_dsh_L_c <=> xu5p_dsh_D_c
rephaccoa_c <=> 2oxpaccoa_c
rfamp_e <=> rfamp_p
h_p + rfamp_p --> rfamp_e + h_c
dtdprmn_c + kphphhlipa_c --> icolipa_c + h_c + dtdp_c
rhcys_c --> hcys_dsh_L_c + dhptd_c
h2o_c + rib_dsh_D_p + atp_c --> rib_dsh_D_c + adp_c + pi_c + h_c
rib_dsh_D_e <=> rib_dsh_D_p
rmn_c <=> rml_c
rml_c + atp_c --> adp_c + rml1p_c + h_c
rmn_e <=> rmn_p
h_p + rmn_p --> h_c + rmn_c
rml1p_c <=> dhap_c + lald_dsh_L_c
trdrd_c + adp_c --> h2o_c + trdox_c + dadp_c
grxrd_c + adp_c --> h2o_c + grxox_c + dadp_c
gdp_c + trdrd_c --> dgdp_c + h2o_c + trdox_c
gdp_c + grxrd_c --> grxox_c + h2o_c + dgdp_c
trdrd_c + cdp_c --> dcdp_c + h2o_c + trdox_c
grxrd_c + cdp_c --> h2o_c + grxox_c + dcdp_c
trdrd_c + udp_c --> h2o_c + dudp_c + trdox_c
grxrd_c + udp_c --> h2o_c + dudp_c + grxox_c
atp_c + 2.0 h_c + 2.0 flxr_c --> datp_c + h2o_c + 2.0 flxso_c
2.0 h_c + gtp_c + 2.0 flxr_c --> 2.0 flxso_c + h2o_c + dgtp_c
2.0 h_c + ctp_c + 2.0 flxr_c --> dctp_c + 2.0 flxso_c + h2o_c
utp_c + 2.0 flxr_c + 2.0 h_c --> 2.0 flxso_c + h2o_c + dutp_c
ru5p_dsh_D_c <=> xu5p_dsh_D_c
r5p_c <=> ru5p_dsh_D_c
h2o_c + 5prdmbz_c --> pi_c + rdmbzi_c
2fe1s_c + atp_c + h2o_c + sufsesh_c + sufbcd_c --> adp_c + sufbcd_dsh_2fe2s_c + pi_c + 5.0 h_c + sufse_c
sufbcd_c + 2.0 sufsesh_c + 2.0 fe2_c + atp_c + h2o_c + fadh2_c --> fad_c + pi_c + sufbcd_dsh_2fe2s_c + adp_c + 7.0 h_c + 2.0 sufse_c
sufbcd_dsh_2fe2s_c + 2.0 sufsesh_c + 2.0 fe2_c + atp_c + h2o_c + fadh2_c --> pi_c + fad_c + adp_c + 7.0 h_c + sufbcd_dsh_2fe2s2_c + 2.0 sufse_c
sufbcd_dsh_2fe2s_c + 4.0 h_c --> sufbcd_c + 2fe2s_c
fadh2_c + 2.0 h_c + sufbcd_dsh_2fe2s2_c --> sufbcd_dsh_4fe4s_c + fad_c
sufbcd_dsh_4fe4s_c + 4.0 h_c --> sufbcd_c + 4fe4s_c
s7p_c --> gmhep7p_c
2.0 h2o_c + 2.0 h_c + sucarg_c --> co2_c + 2.0 nh4_c + sucorn_c
atp_c + so4_c + h2o_c + gtp_c --> gdp_c + pi_c + aps_c + ppi_c
h2o_c + o2_c + sarcs_c --> gly_c + h2o2_c + fald_c
nad_c + sbt6p_c <=> nadh_c + h_c + f6p_c
sbt_dsh_D_p + pep_c --> pyr_c + sbt6p_c
sbt_dsh_D_e <=> sbt_dsh_D_p
cys_dsh_L_c + sufse_c --> ala_dsh_L_c + sufsesh_c
h2o_c + sl26da_c --> succ_c + 26dap_dsh_LL_c
sl26da_c + akg_c <=> glu_dsh_L_c + sl2a6o_c
selnp_c + sertrna_lb_sec_rb__c --> sectrna_c + pi_c + h_c
2.0 h_c + slnt_c + 4.0 gthrd_c --> gthox_c + dgslnt_c + 3.0 h2o_c
h_c + dgslnt_c + nadph_c --> gslnt_c + nadp_c + gthrd_c
gslnt_c + nadph_c --> nadp_c + seln_c + gthrd_c
h2o_c + atp_c + seln_c --> selnp_c + amp_c + pi_c
sel_c + mql8_c --> h2o_c + mqn8_c + slnt_c
sel_e <=> sel_p
2.0 h_p + sel_p --> sel_c + 2.0 h_c
ichor_c + h_c + akg_c --> 2sephchc_c + co2_c
ser_dsh_L_c + h_c + atp_c <=> ppi_c + seramp_c
ser_dsh_L_c + accoa_c <=> acser_c + coa_c
ser_dsh_D_c --> pyr_c + nh4_c
ser_dsh_L_c --> nh4_c + pyr_c
atp_c + ser_dsh_L_c + trnaser_c --> amp_c + ppi_c + sertrna_c
trnasecys_c + ser_dsh_L_c + atp_c --> amp_c + sertrna_lb_sec_rb__c + ppi_c
h_p + ser_dsh_L_p <=> ser_dsh_L_c + h_c
na1_p + ser_dsh_L_p --> na1_c + ser_dsh_L_c
ser_dsh_L_e <=> ser_dsh_L_p
h2o_c + Sfglutth_c --> for_c + h_c + gthrd_c
h2o_c + sucglu_c --> glu_dsh_L_c + succ_c
nad_c + sucgsa_c + h2o_c --> nadh_c + 2.0 h_c + sucglu_c
2sephchc_c --> 2shchc_c + pyr_c
nad_c + dscl_c --> nadh_c + scl_c + h_c
scl_c + fe2_c --> sheme_c + 3.0 h_c
3dhsk_c + nadph_c + h_c <=> nadp_c + skm_c
atp_c + skm_c --> adp_c + skm5p_c + h_c
suchms_c + cys_dsh_L_c --> succ_c + cyst_dsh_L_c + h_c
skm_p + h_p --> h_c + skm_c
skm_e <=> skm_p
slnt_e <=> slnt_p
h_p + slnt_p --> h_c + slnt_c
so2_e <=> so2_p
so2_p <=> so2_c
so3_e <=> so3_p
so4_p + h_p --> h_c + so4_c
so4_e <=> so4_p
akg_c + sucorn_c --> glu_dsh_L_c + sucgsa_c
spmd_c + accoa_c --> N1aspmd_c + coa_c + h_c
spmd_c + accoa_c --> coa_c + h_c + n8aspmd_c
h2o_c + atp_c + spmd_p --> adp_c + pi_c + h_c + spmd_c
spmd_c + h_p --> h_c + spmd_p
spmd_e <=> spmd_p
ametam_c + ptrc_c --> 5mta_c + spmd_c + h_c
2.0 o2s_c + 2.0 h_c --> o2_c + h2o2_c
2.0 h_p + 2.0 o2s_p --> h2o2_p + o2_p
sucsal_c + nad_c + h2o_c --> nadh_c + 2.0 h_c + succ_c
h2o_c + sucsal_c + nadp_c --> 2.0 h_c + nadph_c + succ_c
asp_dsh_L_p + succ_c --> asp_dsh_L_c + succ_p
sucbz_c + atp_c + coa_c --> amp_c + ppi_c + sbzcoa_c
2shchc_c --> h2o_c + sucbz_c
2.0 h_p + succ_p --> succ_c + 2.0 h_c
3.0 h_p + succ_p --> succ_c + 3.0 h_c
succ_c + h_p --> succ_p + h_c
succ_e <=> succ_p
succ_c + q8_c --> q8h2_c + fum_c
succ_c + fum_p --> succ_p + fum_c
succ_c + mal_dsh_L_p --> mal_dsh_L_c + succ_p
atp_c + succ_c + coa_c <=> adp_c + pi_c + succoa_c
sucr_e <=> sucr_p
succ_c + tartr_dsh_D_p --> succ_p + tartr_dsh_D_c
sucr_p + pep_c --> pyr_c + suc6p_c
h2o_c + atp_c + sulfac_p --> adp_c + pi_c + h_c + sulfac_c
sulfac_e <=> sulfac_p
5.0 h_c + 3.0 nadph_c + so3_c --> 3.0 h2o_c + h2s_c + 3.0 nadp_c
so4_p + h2o_c + atp_c --> adp_c + pi_c + h_c + so4_c
tdec2eACP_c <=> cdec3eACP_c
altrn_c + nad_c <=> nadh_c + tagur_c + h_c
g3p_c + s7p_c <=> e4p_c + f6p_c
tartr_dsh_L_c --> h2o_c + oaa_c
tartr_dsh_D_e <=> tartr_dsh_D_p
succ_c + tartr_dsh_L_p <=> tartr_dsh_L_c + succ_p
tartr_dsh_L_e <=> tartr_dsh_L_p
3.0 h_p + tartr_dsh_D_p --> 3.0 h_c + tartr_dsh_D_c
o2_c + akg_c + taur_c --> aacald_c + h_c + succ_c + co2_c + so3_c
h2o_c + atp_c + taur_p --> adp_c + pi_c + h_c + taur_c
taur_e <=> taur_p
tcynt_e <=> tcynt_p
h2o_c + thmpp_c --> thmmp_c + pi_c + h_c
dtdp4addg_c + accoa_c --> coa_c + dtdp4aaddg_c + h_c
glu_dsh_L_c + dtdp4d6dg_c --> dtdp4addg_c + akg_c
dtdp4d6dg_c --> dtdp4d6dm_c
dtdp4d6dm_c + h_c + nadph_c --> nadp_c + dtdprmn_c
dtdpglu_c --> h2o_c + dtdp4d6dg_c
atp_c + lipidAds_c --> adp_c + lipidA_c + h_c
dsbdrd_c + dsbcox_p --> dsbcrd_p + dsbdox_c
dsbdrd_c + dsbgox_p --> dsbgrd_p + dsbdox_c
tagdp_dsh_D_c <=> g3p_c + dhap_c
nadh_c + 2.0 h_p + nadp_c --> nad_c + 2.0 h_c + nadph_c
h2o_c + succoa_c + thdp_c --> coa_c + sl2a6o_c
h2o_c + methf_c --> 5fthf_c + h_c
trdrd_c + h2o2_c --> 2.0 h2o_c + trdox_c
h_p + thymd_p --> h_c + thymd_c
h_p + thymd_p <=> h_c + thymd_c
thymd_e <=> thymd_p
h2o_c + thm_p + atp_c --> adp_c + pi_c + h_c + thm_c
thm_e <=> thm_p
athr_dsh_L_c --> gly_c + acald_c
thr_dsh_L_c --> gly_c + acald_c
nad_c + thr_dsh_L_c --> nadh_c + 2aobut_c + h_c
thr_dsh_L_c --> 2obut_c + nh4_c
thrp_e <=> thrp_p
h2o_c + phom_c --> pi_c + thr_dsh_L_c
thr_dsh_L_c + atp_c + trnathr_c --> amp_c + ppi_c + thrtrna_c
thr_dsh_L_p + h2o_c + atp_c --> pi_c + h_c + adp_c + thr_dsh_L_c
h_p + thr_dsh_L_c --> thr_dsh_L_p + h_c
h_p + thr_dsh_L_p <=> h_c + thr_dsh_L_c
thr_dsh_L_p + na1_p --> na1_c + thr_dsh_L_c
thr_dsh_L_e <=> thr_dsh_L_p
thym_c + h_p --> h_c + thym_p
thym_e <=> thym_p
dxyl5p_c + nadph_c + atp_c + h_c + iscssh_c + dhgly_c --> co2_c + amp_c + ppi_c + 2.0 h2o_c + 4mpetz_c + nadp_c + iscs_c
xu5p_dsh_D_c + r5p_c <=> g3p_c + s7p_c
e4p_c + xu5p_dsh_D_c <=> g3p_c + f6p_c
h_c + tmao_c + mql8_c --> mqn8_c + h2o_c + tma_c
h_p + tmao_p + mql8_c --> mqn8_c + h2o_p + tma_p
2dmmql8_c + h_c + tmao_c --> h2o_c + tma_c + 2dmmq8_c
h_p + 2dmmql8_c + tmao_p --> h2o_p + 2dmmq8_c + tma_p
tmao_e <=> tmao_p
tma_e <=> tma_p
atp_c + thymd_c --> adp_c + dtmp_c + h_c
thymd_c + pi_c <=> thym_c + 2dr1p_c
mlthf_c + dump_c --> dtmp_c + dhf_c
atp_c + thm_c --> thmmp_c + adp_c + h_c
thmmp_c + atp_c --> thmpp_c + adp_c
2mahmp_c + h_c + 4mpetz_c --> thmmp_c + ppi_c
dhap_c <=> g3p_c
dpcoa_c + atp_c --> ade_c + 2tpr3dpcoa_c
trdox_c + h_c + nadph_c --> nadp_c + trdrd_c
h2o_c + tre6p_c --> g6p_c + glc_dsh_D_c
h2o_c + tre6p_c --> pi_c + tre_c
g6p_c + udpg_c --> udp_c + h_c + tre6p_c
h2o_c + tre_c --> 2.0 glc_dsh_D_c
h2o_p + tre_p --> 2.0 glc_dsh_D_p
tre_p + pep_c --> pyr_c + tre6p_c
tre_e <=> tre_p
h2o_c + trp_dsh_L_c <=> pyr_c + nh4_c + indole_c
ser_dsh_L_c + 3ig3p_c --> h2o_c + g3p_c + trp_dsh_L_c
ser_dsh_L_c + indole_c --> h2o_c + trp_dsh_L_c
3ig3p_c --> g3p_c + indole_c
trnatrp_c + atp_c + trp_dsh_L_c --> trptrna_c + amp_c + ppi_c
trp_dsh_L_p + h_p <=> h_c + trp_dsh_L_c
trp_dsh_L_e <=> trp_dsh_L_p
nadh_c + 2h3oppan_c + h_c <=> nad_c + glyc_dsh_R_c
tsul_p + h2o_c + atp_c --> adp_c + pi_c + h_c + tsul_c
tsul_e <=> tsul_p
ttdca_e --> ttdca_p
ttdcea_e --> ttdcea_p
ttrcyc_e <=> ttrcyc_p
ttrcyc_p + h_p --> ttrcyc_e + h_c
tungs_p + h2o_c + atp_c --> adp_c + tungs_c + pi_c + h_c
tungs_e <=> tungs_p
tym_e <=> tym_p
nadph_c + tyr_dsh_L_c + amet_c --> dad_dsh_5_c + h_c + dhgly_c + 4crsol_c + met_dsh_L_c + nadp_c
o2_p + h2o_p + tym_p --> nh4_p + 4hoxpacd_p + h2o2_p
h2o_p + tyrp_p --> pi_p + tyr_dsh_L_p
tyrp_e <=> tyrp_p
tyr_dsh_L_c + akg_c <=> glu_dsh_L_c + 34hpp_c
trnatyr_c + atp_c + tyr_dsh_L_c --> amp_c + tyrtrna_c + ppi_c
h_p + tyr_dsh_L_p <=> tyr_dsh_L_c + h_c
tyr_dsh_L_e <=> tyr_dsh_L_p
thmpp_c + adp_c + h_c --> athtp_c + pi_c
3hmrsACP_c + u3hga_c --> h_c + ACP_c + u23ga_c
uamag_c + atp_c + 26dap_dsh_M_c --> adp_c + pi_c + h_c + ugmd_c
udpacgal_p + h2o_p --> ump_p + acgal1p_p + 2.0 h_p
h2o_p + uacgam_p --> 2.0 h_p + ump_p + acgam1p_p
uacgam_e <=> uacgam_p
2.0 nad_c + h2o_c + uacmam_c --> 2.0 nadh_c + 3.0 h_c + uacmamu_c
uacgam_c <=> uacmam_c
uacgam_c + 3hmrsACP_c <=> u3aga_c + ACP_c
uacgam_c + pep_c --> pi_c + uaccg_c
acgam1p_c + utp_c + h_c --> uacgam_c + ppi_c
uacgam_c + uagmda_c --> udp_c + h_c + uaagmda_c
glu_dsh_D_c + atp_c + uama_c --> uamag_c + pi_c + h_c + adp_c
uamr_c + ala_dsh_L_c + atp_c --> adp_c + pi_c + h_c + uama_c
uaccg_c + h_c + nadph_c --> nadp_c + uamr_c
h2o_c + udcpdp_c --> pi_c + h_c + udcpp_c
frdp_c + 8.0 ipdp_c --> udcpdp_c + 8.0 ppi_c
udcpdp_p + h2o_p --> pi_p + h_p + udcpp_p
udcpp_p --> udcpp_c
udpacgal_e <=> udpacgal_p
udpg_c <=> udpgal_c
udpgal_c --> udpgalfur_c
h2o_p + udpgal_p --> ump_p + 2.0 h_p + gal1p_p
udpgal_e <=> udpgal_p
2.0 nad_c + h2o_c + udpg_c --> 2.0 nadh_c + udpglcur_c + 3.0 h_c
nad_c + udpglcur_c --> nadh_c + co2_c + udpLa4o_c
udpglcur_e <=> udpglcur_p
h2o_p + udpg_p --> g1p_p + ump_p + 2.0 h_p
udpg_e <=> udpg_p
glu_dsh_L_c + udpLa4o_c <=> udpLa4n_c + akg_c
udpglcur_p + h2o_p --> glcur1p_p + ump_p + 2.0 h_p
gal1p_c + udpg_c <=> udpgal_c + g1p_c
2.0 h_c + urdglyc_c + h2o_c --> co2_c + 2.0 nh4_c + glx_c
alaala_c + ugmd_c + atp_c --> ugmda_c + adp_c + pi_c + h_c
h2o_c + u3aga_c --> ac_c + u3hga_c
10fthf_c + udpLa4n_c --> udpLa4fn_c + h_c + thf_c
uLa4n_c --> uLa4n_p
LalaDgluMdap_c + uamr_c + atp_c --> pi_c + h_c + ugmd_c + adp_c
h2o_c + um4p_c --> ugmd_c + ala_dsh_D_c
uamr_c + LalaDgluMdapDala_c + atp_c --> adp_c + pi_c + h_c + um4p_c
atp_c + ump_c <=> adp_c + udp_c
ump_e <=> ump_p
h2o_c + uLa4fn_c --> uLa4n_c + for_c
udpLa4fn_c + udcpp_c --> udp_c + uLa4fn_c
uppg3_c + 2.0 amet_c --> 2.0 ahcys_c + dscl_c + h_c
hmbil_c --> h2o_c + uppg3_c
uppg3_c + 4.0 h_c --> 4.0 co2_c + cpppg3_c
ura_c + prpp_c --> ump_c + ppi_c
h2o_c + uracp_c --> cbm_c + poaac_c + h_c
h_p + ura_p --> h_c + ura_c
h_p + ura_p <=> h_c + ura_c
ura_e <=> ura_p
nad_c + urdglyc_c --> nadh_c + oxur_c + h_c
urea_e <=> urea_p
urea_p <=> urea_c
o2_c + urate_c + 2.0 h2o_c --> co2_c + h2o2_c + alltn_c
h2o_c + uri_c --> rib_dsh_D_c + ura_c
gtp_c + uri_c --> gdp_c + h_c + ump_c
uri_p + h_p --> uri_c + h_c
uri_p + h_p <=> uri_c + h_c
uri_e <=> uri_p
h2o_c + u23ga_c --> lipidX_c + 2.0 h_c + ump_c
akg_c + val_dsh_L_c <=> glu_dsh_L_c + 3mob_c
trnaval_c + atp_c + val_dsh_L_c --> amp_c + ppi_c + valtrna_c
val_dsh_L_p + h2o_c + atp_c --> adp_c + pi_c + h_c + val_dsh_L_c
h_p + val_dsh_L_p <=> h_c + val_dsh_L_c
val_dsh_L_e <=> val_dsh_L_p
ala_dsh_L_c + 3mob_c <=> pyr_c + val_dsh_L_c
tungs_c + 2.0 h_c + mptamp_c --> wco_c + amp_c + h2o_c + cu2_c
xu5p_dsh_L_c --> ru5p_dsh_L_c
nad_c + h2o_c + xan_c --> nadh_c + h_c + urate_c
xan_p + h_p --> xan_c + h_c
xan_e <=> xan_p
xan_p <=> xan_c
xmp_e <=> xmp_p
xan_c + prpp_c --> xmp_c + ppi_c
h2o_c + xtsn_c --> rib_dsh_D_c + xan_c
h_p + xtsn_p <=> xtsn_c + h_c
xtsn_e <=> xtsn_p
xyl_dsh_D_c <=> xylu_dsh_D_c
glc_dsh_D_c <=> fru_c
xylu_dsh_D_c + atp_c --> adp_c + h_c + xu5p_dsh_D_c
atp_c + xylu_dsh_L_c --> adp_c + h_c + xu5p_dsh_L_c
h_p + xylu_dsh_L_p --> h_c + xylu_dsh_L_c
xylu_dsh_L_e <=> xylu_dsh_L_p
xyl_dsh_D_p + h2o_c + atp_c --> adp_c + h_c + xyl_dsh_D_c + pi_c
h_p + xyl_dsh_D_p --> xyl_dsh_D_c + h_c
xyl_dsh_D_e <=> xyl_dsh_D_p
atp_c + zn2_c + h2o_c --> adp_c + pi_c + zn2_p + h_c
h_p + zn2_c --> zn2_p + h_c
zn2_p --> zn2_c
atp_c + h2o_c + zn2_p --> adp_c + pi_c + h_c + zn2_c
zn2_e <=> zn2_p
" ], "text/plain": [ "" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Step 2: Simulate a model\n", "\n", "The model can be simulated by executing `model.solve()`." ] }, { "cell_type": "code", "execution_count": 5, "metadata": { "collapsed": false }, "outputs": [], "source": [ "solution = model.solve()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "A quick overview of the solution can be obtained in form of a pandas [DataFrame](http://pandas.pydata.org/pandas-docs/stable/generated/pandas.DataFrame.html) (all solution objects in cameo provide access to data frames through a `data_frame` attribute)." ] }, { "cell_type": "code", "execution_count": 6, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
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fluxesreduced_costs
DM_4CRSOL0.0002190.000219
DM_5DRIB0.0002210.000221
DM_AACALD0.0000000.000000
DM_AMOB0.0000020.000002
.........
ZN2t3pp0.0000000.000000
ZN2tpp0.0003350.000335
ZNabcpp0.0000000.000000
Zn2tex0.0003350.000335
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2583 rows × 2 columns

\n", "
" ], "text/plain": [ "" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "solution" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The data frame is accessible through `solution.data_frame`." ] }, { "cell_type": "code", "execution_count": 7, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
fluxesreduced_costs
DM_4CRSOL0.0002190.000219
DM_5DRIB0.0002210.000221
DM_AACALD0.0000000.000000
DM_AMOB0.0000020.000002
.........
ZN2t3pp0.0000000.000000
ZN2tpp0.0003350.000335
ZNabcpp0.0000000.000000
Zn2tex0.0003350.000335
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2583 rows × 2 columns

\n", "
" ], "text/plain": [ " fluxes reduced_costs\n", "DM_4CRSOL 0.000219 0.000219\n", "DM_5DRIB 0.000221 0.000221\n", "DM_AACALD 0.000000 0.000000\n", "DM_AMOB 0.000002 0.000002\n", "... ... ...\n", "ZN2t3pp 0.000000 0.000000\n", "ZN2tpp 0.000335 0.000335\n", "ZNabcpp 0.000000 0.000000\n", "Zn2tex 0.000335 0.000335\n", "\n", "[2583 rows x 2 columns]" ] }, "execution_count": 7, "metadata": {}, "output_type": "execute_result" } ], "source": [ "solution.data_frame" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Data frames make it very easy to process results. For example, let's take a look at reactions with flux != 0" ] }, { "cell_type": "code", "execution_count": 8, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
fluxesreduced_costs
DM_4CRSOL0.0002190.000219
DM_5DRIB0.0002210.000221
DM_AMOB0.0000020.000002
DM_MTHTHF0.0004400.000440
.........
USHD0.0191130.019113
VALTA-0.415702-0.415702
ZN2tpp0.0003350.000335
Zn2tex0.0003350.000335
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446 rows × 2 columns

\n", "
" ], "text/plain": [ " fluxes reduced_costs\n", "DM_4CRSOL 0.000219 0.000219\n", "DM_5DRIB 0.000221 0.000221\n", "DM_AMOB 0.000002 0.000002\n", "DM_MTHTHF 0.000440 0.000440\n", "... ... ...\n", "USHD 0.019113 0.019113\n", "VALTA -0.415702 -0.415702\n", "ZN2tpp 0.000335 0.000335\n", "Zn2tex 0.000335 0.000335\n", "\n", "[446 rows x 2 columns]" ] }, "execution_count": 8, "metadata": {}, "output_type": "execute_result" } ], "source": [ "solution.data_frame.query('fluxes != 0')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Step 3: Exploring a model\n", "\n", "Objects—models, reactions, metabolites, genes—can easily be explored in the Jupyter notebook, taking advantage of tab completion. For example, place your cursor after the period in `model.reactions.` and press the TAB key. A dialog will appear that allows you to navigate the list of reactions encoded in the model. " ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "model.reactions. # place your cursor after the period and press the TAB key." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "For example, you can access the E4PD (_Erythrose 4-phosphate dehydrogenase_) reaction in the model." ] }, { "cell_type": "code", "execution_count": 10, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
IdE4PD
NameErythrose 4-phosphate dehydrogenase
Stoichiometrynad_c + h2o_c + e4p_c <=> nadh_c + 2.0 h_c + 4per_c
Lower bound-1000.000000
Upper bound1000.000000
\n", " " ], "text/plain": [ "" ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.reactions.E4PD" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Be aware though that due variable naming restrictions in Python dot notation access to reactions (and other objects) might not work in some cases." ] }, { "cell_type": "code", "execution_count": 11, "metadata": { "collapsed": false }, "outputs": [ { "ename": "SyntaxError", "evalue": "invalid syntax (, line 1)", "output_type": "error", "traceback": [ "\u001b[0;36m File \u001b[0;32m\"\"\u001b[0;36m, line \u001b[0;32m1\u001b[0m\n\u001b[0;31m model.reactions.12DGR120tipp\u001b[0m\n\u001b[0m ^\u001b[0m\n\u001b[0;31mSyntaxError\u001b[0m\u001b[0;31m:\u001b[0m invalid syntax\n" ] } ], "source": [ "model.reactions.12DGR120tipp" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "In these cases you need to use the `model.reactions.get_by_id`." ] }, { "cell_type": "code", "execution_count": 12, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
Id12DGR120tipp
Name1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)
Stoichiometry12dgr120_p --> 12dgr120_c
Lower bound0.000000
Upper bound1000.000000
\n", " " ], "text/plain": [ "" ] }, "execution_count": 12, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.reactions.get_by_id('12DGR120tipp')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Metabolites are accessible through `model.metabolites`. For example, D-glucose in the cytosolic compartment." ] }, { "cell_type": "code", "execution_count": 13, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "" ] }, "execution_count": 13, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.metabolites.glc_dsh_D_c" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "A list of the genes encoded in the model can be accessed via `model.genes`." ] }, { "cell_type": "code", "execution_count": 14, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "[,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", 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" ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ...]" ] }, "execution_count": 14, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.genes" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "A few additional attributes have been added that are not available in a [cobrapy](https://opencobra.github.io/cobrapy/) model. For example, exchange reactions that allow certain metabolites to enter or leave the model can be accessed through `model.exchanges`." ] }, { "cell_type": "code", "execution_count": 15, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "[,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ]" ] }, "execution_count": 15, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.exchanges" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Or, the current medium can be accessed through `model.medium`." ] }, { "cell_type": "code", "execution_count": 16, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
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reaction_idreaction_namelower_boundupper_bound
0EX_ca2_lp_e_rp_Calcium exchange-1000.001000
1EX_cbl1_lp_e_rp_Cob(I)alamin exchange-0.011000
2EX_cl_lp_e_rp_Chloride exchange-1000.001000
3EX_co2_lp_e_rp_CO2 exchange-1000.001000
...............
21EX_slnt_lp_e_rp_selenite exchange-1000.001000
22EX_so4_lp_e_rp_Sulfate exchange-1000.001000
23EX_tungs_lp_e_rp_tungstate exchange-1000.001000
24EX_zn2_lp_e_rp_Zinc exchange-1000.001000
\n", "

25 rows × 4 columns

\n", "
" ], "text/plain": [ " reaction_id reaction_name lower_bound upper_bound\n", "0 EX_ca2_lp_e_rp_ Calcium exchange -1000.00 1000\n", "1 EX_cbl1_lp_e_rp_ Cob(I)alamin exchange -0.01 1000\n", "2 EX_cl_lp_e_rp_ Chloride exchange -1000.00 1000\n", "3 EX_co2_lp_e_rp_ CO2 exchange -1000.00 1000\n", ".. ... ... ... ...\n", "21 EX_slnt_lp_e_rp_ selenite exchange -1000.00 1000\n", "22 EX_so4_lp_e_rp_ Sulfate exchange -1000.00 1000\n", "23 EX_tungs_lp_e_rp_ tungstate exchange -1000.00 1000\n", "24 EX_zn2_lp_e_rp_ Zinc exchange -1000.00 1000\n", "\n", "[25 rows x 4 columns]" ] }, "execution_count": 16, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.medium" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "It is also possible to get a list of essential reactions ..." ] }, { "cell_type": "code", "execution_count": 17, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "[,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", 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" ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ]" ] }, "execution_count": 17, "metadata": {}, "output_type": "execute_result" } ], "source": [ "model.essential_reactions()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "... and essential genes." ] }, { "cell_type": "code", "execution_count": 18, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "[,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " ,\n", " 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