{ "cells": [ { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": true }, "outputs": [], "source": [ "from cameo import webmodels" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": false }, "outputs": [], "source": [ "models = webmodels.index_models()" ] }, { "cell_type": "code", "execution_count": 11, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
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idnamedoiauthoryearformatsorganismtaxonomy
0 1 iJR904 10.1186/gb-2003-4-9-r54 Reed 2003 [sbml] Escherichia coli str. K12 substr. MG1655 Bacteria; Proteobacteria; Gammaproteobacteria;...
1 2 iAF1260 10.1038/msb4100155 Feist 2007 [sbml] Escherichia coli str. K12 substr. MG1655 Bacteria; Proteobacteria; Gammaproteobacteria;...
2 3 iMM904 10.1186/1752-0509-3-37 Mo 2007 [sbml] Saccharomyces cerevisiae Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
3 4 iJP815 10.1371/journal.pcbi.1000210 Puchalka 2008 [sbml] Pseudomonas putida str. KT2440 Bacteria; Proteobacteria; Gammaproteobacteria;...
4 5 iMO1056 10.1128/JB.01583-07 Oberhardt 2008 [] Pseudomonas aeruginosa str. PAO1 Bacteria; Proteobacteria; Gammaproteobacteria;...
5 6 iIN800 10.1186/1752-0509-2-71 Nookaew 2008 [sbml] Saccharomyces cerevisiae Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
6 7 iFF708 10.1101/gr.234503 Förster 2003 [sbml] Saccharomyces cerevisiae str. Sc288 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
7 8 iCA1273 10.1186/1471-2164-12-9 Archer 2011 [sbml] Escherichia coli W Bacteria; Proteobacteria; Gammaproteobacteria;...
8 9 iJO1366 10.1038/msb.2011.65 Orth 2011 [sbml] Escherichia coli str. K12 substr. MG1655 Bacteria; Proteobacteria; Gammaproteobacteria;...
9 10 Consensus v4 10.1038/nbt1492 Herrgård 2008 [] Yeast Eukaryota; Opisthokonta; Fungi;
10 11 iJN746 10.1186/1752-0509-2-79 Nogales 2008 [sbml] Pseudomonas putida str. KT2440 Bacteria; Proteobacteria; Gammaproteobacteria;...
11 12 AbyMBEL891 10.1039/B916446D Kim 2010 [sbml] Acinetobacter baumannii AYE Bacteria; Proteobacteria; Gammaproteobacteria;...
12 13 iJP962 10.1371/journal.pcbi.1001116 Oberhardt 2011 [sbml] Pseudomonas putida str. KT2440 Bacteria; Proteobacteria; Gammaproteobacteria;...
13 14 iYL1228 10.1128/JB.01218-10 Liao 2011 [sbml] Klebsiella pneumoniae str. MGH 78578 Bacteria; Proteobacteria; Gammaproteobacteria;...
14 15 iSR432 10.1186/1752-0509-4-31 Roberts 2010 [sbml] Clostridium thermocellum str. ATCC 27405 Bacteria; Firmicutes; Clostridia; Clostridial...
15 16 iNJ661m 10.1186/1752-0509-4-160 Fang 2010 [sbml] Mycobacterium tuberculosis str. H37Rv Bacteria; Actinobacteria; Actinobacteria; Acti...
16 17 iCM925 10.1186/1752-0509-5-130 Milne 2011 [sbml] Clostridium beijerinckii str. NCIMB 8052 Bacteria; Firmicutes; Clostridia; Clostridiale...
17 18 iBsu1103 10.1186/gb-2009-10-6-r69 Henry 2009 [sbml] Bacillus subtilis 168 Bacteria; Firmicutes; Bacilli; Bacillales; Bac...
18 19 iAI549 10.1371/journal.pcbi.1000887 Islam 2010 [sbml] Dehalococcoides ethenogenes str. 2061 Bacteria; Chloroflexi; Dehalococcoidetes; Deha...
19 20 iAF692 10.1038/msb4100046 Feist 2006 [sbml] Methanosarcina barkeri Archaea; Euryarchaeota; Methanomicrobia; Metha...
20 21 AraGEM 10.1186/1471-2164-12-S4-S5 de Oliveira Dal'Molin 2010 [sbml] Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Strept...
21 22 Ecoli core Model 10.1128/ecosal.10.2.1 Orth 2010 [sbml] Escherichia coli str. K12 substr. MG1655 Bacteria; Proteobacteria; Gammaproteobacteria;...
22 23 iIT341 10.1128/JB.187.16.5818-5830.2005 Thiele 2005 [sbml] Helicobacter pylori str. 26695 Bacteria; Proteobacteria; delta/epsilon subdi...
23 24 iMH805/775 10.1038/nbt1492 Herrgård 2008 [sbml] Saccharomyces cerevisiae str. Sc288 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
24 25 iND750 10.1101/gr.2250904 Duarte 2004 [sbml] Saccharomyces cerevisiae str. Sc288 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
25 26 iRC1080 10.1038/msb.2011.52 Chang 2011 [sbml] Chlamydomonas reinhardtii Eukaryota; Viridiplantae; Chlorophyta; Chlorop...
26 27 iSB619 10.1186/1471-2180-5-8 Becker 2005 [sbml] Staphylococcus aureus Bacteria; Firmicutes; Bacilli; Bacillales; St...
27 28 iTH366 10.1038/msb.2010.60 Plata 2010 [sbml] Plasmodium falciparum Eukaryota; Alveolata; Apicomplexa; Aconoidasid...
28 29 iTZ479 10.1126/science.1174671 Zhang 2009 [sbml] Thermotoga maritima str. MSB8 Bacteria; Thermotogae; Thermotogae; Thermotoga...
29 30 recon2 10.1038/nbt.2488 Thiele 2013 [sbml] Homo sapiens Eukaryota; Opisthokonta; Metazoa; Eumetazoa; B...
...........................
114 115 iAK692 10.1186/1752-0509-6-71 Klanchui 2012 [sbml] Spirulina platensis C1 Bacteria; Cyanobacteria; Oscillatoriophycideae...
115 116 iSS352 10.1016/j.jbiotec.2013.01.023 Schatschneider 2013 [sbml] Xanthomonas campestris pv. campestris str. B100 Bacteria; Proteobacteria; Gammaproteobacteria;...
116 117 iSS352 10.1016/j.jbiotec.2013.01.023 Schatschneider 2013 [sbml] Xanthomonas campestris pv. campestris str. B100 Bacteria; Proteobacteria; Gammaproteobacteria;...
117 118 iOD907 Oscar Dias 2013 [sbml] Kluyveromyces lactis NRRL Y-1140 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
118 119 iCAC490 10.1186/1752-0509-6-42 McAnulty 2012 [sbml] Clostridium acetobutylicum ATCC 824 Bacteria; Firmicutes; Clostridia; Clostridiale...
119 120 iTZ479_v2 10.1016/j.ijhydene.2012.06.032 Nogales 2012 [] Thermotoga maritima Bacteria; Thermotogae; Thermotogae; Thermotoga...
120 121 iAH991 10.4161/gmic.22370 Heinken 2012 [] Bacteroides thetaiotaomicron Bacteria; Bacteroidetes/Chlorobi group; Bacter...
121 122 SPNV1.0 10.1186/1475-2859-13-41 Wang 2014 [excel] Saccharopolyspora spinosa NRRL 18395 Bacteria; Actinobacteria; Actinobacteria; Acti...
122 123 iCyc792 10.1186/1752-0509-7-142 Mueller 2013 [sbml, excel] Cyanothece sp. PCC 7424 Bacteria; Cyanobacteria; Oscillatoriophycideae...
123 124 iCyn731 10.1186/1752-0509-7-142 Mueller 2013 [sbml, excel] Cyanothece sp. PCC 7425 Bacteria; Cyanobacteria; Oscillatoriophycideae...
124 125 iCyj826 10.1186/1752-0509-7-142 Mueller 2013 [sbml, excel] Cyanothece sp. PCC 7822 Bacteria; Cyanobacteria; Oscillatoriophycideae...
125 126 iCyp752 10.1186/1752-0509-7-142 Mueller 2013 [sbml, excel] Cyanothece sp. PCC 8801 Bacteria; Cyanobacteria; Oscillatoriophycideae...
126 127 iCyh755 10.1186/1752-0509-7-142 Mueller 2013 [sbml, excel] Cyanothece sp. PCC 8802 Bacteria; Cyanobacteria; Oscillatoriophycideae...
127 128 iNF518 10.1007/s00253-013-5140-2 Flahaut 2013 [sbml] Lactococcus lactis subsp. cremoris MG1363 Bacteria; Firmicutes; Bacilli; Lactobacillales...
128 129 iJL1454 10.1039/C3MB70090A Jie Liu 2013 [excel] Aspergillus terreus NIH2624 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom...
129 130 iBif452 10.1186/1752-0509-8-41 El-Semman 2014 [sbml, excel] Bifidobacterium adolescentis L2-32 Bacteria; Actinobacteria; Actinobacteria; Acti...
130 131 iFap484 10.1186/1752-0509-8-41 El-Semman 2014 [sbml, excel] Faecalibacterium prausnitzii A2-165 Bacteria; Firmicutes; Clostridia; Clostridiale...
131 132 iAM388 10.1186/1471-2164-12-535 Aline Metris 2011 [excel] Campylobacter jejuni subsp. jejuni NCTC 11168 Bacteria; Proteobacteria; delta/epsilon subdiv...
132 133 iTT548 10.1186/1475-2859-13-61 Na-Rae Lee 2014 [sbml, excel] Thermus thermophilus Bacteria; Deinococcus-Thermus; Deinococci; The...
133 134 EctoGEM-1.0 10.1111/tpj.12627 Prigent 2014 [sbml] Ectocarpus siliculosus Eukaryota; Stramenopiles; PX clade; Phaeophyce...
134 135 iMF721 10.1111/1462-2920.12513 Fondi 2014 [sbml] Pseudoalteromonas haloplanktis TAC125 Bacteria; Proteobacteria; Gammaproteobacteria;...
135 136 Arabidopsis core model 10.1104/pp.114.235358 Arnold 2014 [sbml] Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Strept...
136 137 iHN637 10.1186/1475-2859-12-118 Harish Nagarajan 2013 [] Clostridium ljungdahlii Bacteria; Firmicutes; Clostridia; Clostridiale...
137 138 iCac802 10.1186/s13068-014-0144-4 Satyakam Dash 2014 [sbml] Clostridium acetobutylicum ATCC 824 Bacteria; Firmicutes; Clostridia; Clostridiale...
138 139 iMLTC806cdf 10.1186/s12918-014-0117-z M. Larocque 2014 [sbml, excel] Clostridium difficile 630 Bacteria; Firmicutes; Clostridia; Clostridiale...
139 140 iCY1106 10.1186/s12918-014-0137-8 Chao Ye 2015 [sbml] Mortierella alpina Eukaryota; Opisthokonta; Fungi; Fungi incertae...
140 141 iMM518 10.1039/c3mb70421a N. Goyal 2014 [excel] Methanococcus maripaludis S2 Archaea; Euryarchaeota; Methanococci; Methanoc...
141 142 iPC1209 10.1016/j.febslet.2014.12.010 Cheng Wang 2015 [] Pectobacterium carotovorum subsp. carotovorum PC1 Bacteria; Proteobacteria; Gammaproteobacteria;...
142 143 iNV706 10.1128/AEM.03279-14 N. Veith 2014 [] Enterococcus faecalis V583 Bacteria; Firmicutes; Bacilli; Lactobacillales...
143 144 KoxGSC1457 10.1186/1475-2859-12-20 J. Park 2013 [] Klebsiella oxytoca Bacteria; Proteobacteria; Gammaproteobacteria;...
\n", "

144 rows × 8 columns

\n", "
" ], "text/plain": [ " id name doi \\\n", "0 1 iJR904 10.1186/gb-2003-4-9-r54 \n", "1 2 iAF1260 10.1038/msb4100155 \n", "2 3 iMM904 10.1186/1752-0509-3-37 \n", "3 4 iJP815 10.1371/journal.pcbi.1000210 \n", "4 5 iMO1056 10.1128/JB.01583-07 \n", "5 6 iIN800 10.1186/1752-0509-2-71 \n", "6 7 iFF708 10.1101/gr.234503 \n", "7 8 iCA1273 10.1186/1471-2164-12-9 \n", "8 9 iJO1366 10.1038/msb.2011.65 \n", "9 10 Consensus v4 10.1038/nbt1492 \n", "10 11 iJN746 10.1186/1752-0509-2-79 \n", "11 12 AbyMBEL891 10.1039/B916446D \n", "12 13 iJP962 10.1371/journal.pcbi.1001116 \n", "13 14 iYL1228 10.1128/JB.01218-10 \n", "14 15 iSR432 10.1186/1752-0509-4-31 \n", "15 16 iNJ661m 10.1186/1752-0509-4-160 \n", "16 17 iCM925 10.1186/1752-0509-5-130 \n", "17 18 iBsu1103 10.1186/gb-2009-10-6-r69 \n", "18 19 iAI549 10.1371/journal.pcbi.1000887 \n", "19 20 iAF692 10.1038/msb4100046 \n", "20 21 AraGEM 10.1186/1471-2164-12-S4-S5 \n", "21 22 Ecoli core Model 10.1128/ecosal.10.2.1 \n", "22 23 iIT341 10.1128/JB.187.16.5818-5830.2005 \n", "23 24 iMH805/775 10.1038/nbt1492 \n", "24 25 iND750 10.1101/gr.2250904 \n", "25 26 iRC1080 10.1038/msb.2011.52 \n", "26 27 iSB619 10.1186/1471-2180-5-8 \n", "27 28 iTH366 10.1038/msb.2010.60 \n", "28 29 iTZ479 10.1126/science.1174671 \n", "29 30 recon2 10.1038/nbt.2488 \n", ".. ... ... ... \n", "114 115 iAK692 10.1186/1752-0509-6-71 \n", "115 116 iSS352 10.1016/j.jbiotec.2013.01.023 \n", "116 117 iSS352 10.1016/j.jbiotec.2013.01.023 \n", "117 118 iOD907 \n", "118 119 iCAC490 10.1186/1752-0509-6-42 \n", "119 120 iTZ479_v2 10.1016/j.ijhydene.2012.06.032 \n", "120 121 iAH991 10.4161/gmic.22370 \n", "121 122 SPNV1.0 10.1186/1475-2859-13-41 \n", "122 123 iCyc792 10.1186/1752-0509-7-142 \n", "123 124 iCyn731 10.1186/1752-0509-7-142 \n", "124 125 iCyj826 10.1186/1752-0509-7-142 \n", "125 126 iCyp752 10.1186/1752-0509-7-142 \n", "126 127 iCyh755 10.1186/1752-0509-7-142 \n", "127 128 iNF518 10.1007/s00253-013-5140-2 \n", "128 129 iJL1454 10.1039/C3MB70090A \n", "129 130 iBif452 10.1186/1752-0509-8-41 \n", "130 131 iFap484 10.1186/1752-0509-8-41 \n", "131 132 iAM388 10.1186/1471-2164-12-535 \n", "132 133 iTT548 10.1186/1475-2859-13-61 \n", "133 134 EctoGEM-1.0 10.1111/tpj.12627 \n", "134 135 iMF721 10.1111/1462-2920.12513 \n", "135 136 Arabidopsis core model 10.1104/pp.114.235358 \n", "136 137 iHN637 10.1186/1475-2859-12-118 \n", "137 138 iCac802 10.1186/s13068-014-0144-4 \n", "138 139 iMLTC806cdf 10.1186/s12918-014-0117-z \n", "139 140 iCY1106 10.1186/s12918-014-0137-8 \n", "140 141 iMM518 10.1039/c3mb70421a \n", "141 142 iPC1209 10.1016/j.febslet.2014.12.010 \n", "142 143 iNV706 10.1128/AEM.03279-14 \n", "143 144 KoxGSC1457 10.1186/1475-2859-12-20 \n", "\n", " author year formats \\\n", "0 Reed 2003 [sbml] \n", "1 Feist 2007 [sbml] \n", "2 Mo 2007 [sbml] \n", "3 Puchalka 2008 [sbml] \n", "4 Oberhardt 2008 [] \n", "5 Nookaew 2008 [sbml] \n", "6 Förster 2003 [sbml] \n", "7 Archer 2011 [sbml] \n", "8 Orth 2011 [sbml] \n", "9 Herrgård 2008 [] \n", "10 Nogales 2008 [sbml] \n", "11 Kim 2010 [sbml] \n", "12 Oberhardt 2011 [sbml] \n", "13 Liao 2011 [sbml] \n", "14 Roberts 2010 [sbml] \n", "15 Fang 2010 [sbml] \n", "16 Milne 2011 [sbml] \n", "17 Henry 2009 [sbml] \n", "18 Islam 2010 [sbml] \n", "19 Feist 2006 [sbml] \n", "20 de Oliveira Dal'Molin 2010 [sbml] \n", "21 Orth 2010 [sbml] \n", "22 Thiele 2005 [sbml] \n", "23 Herrgård 2008 [sbml] \n", "24 Duarte 2004 [sbml] \n", "25 Chang 2011 [sbml] \n", "26 Becker 2005 [sbml] \n", "27 Plata 2010 [sbml] \n", "28 Zhang 2009 [sbml] \n", "29 Thiele 2013 [sbml] \n", ".. ... ... ... \n", "114 Klanchui 2012 [sbml] \n", "115 Schatschneider 2013 [sbml] \n", "116 Schatschneider 2013 [sbml] \n", "117 Oscar Dias 2013 [sbml] \n", "118 McAnulty 2012 [sbml] \n", "119 Nogales 2012 [] \n", "120 Heinken 2012 [] \n", "121 Wang 2014 [excel] \n", "122 Mueller 2013 [sbml, excel] \n", "123 Mueller 2013 [sbml, excel] \n", "124 Mueller 2013 [sbml, excel] \n", "125 Mueller 2013 [sbml, excel] \n", "126 Mueller 2013 [sbml, excel] \n", "127 Flahaut 2013 [sbml] \n", "128 Jie Liu 2013 [excel] \n", "129 El-Semman 2014 [sbml, excel] \n", "130 El-Semman 2014 [sbml, excel] \n", "131 Aline Metris 2011 [excel] \n", "132 Na-Rae Lee 2014 [sbml, excel] \n", "133 Prigent 2014 [sbml] \n", "134 Fondi 2014 [sbml] \n", "135 Arnold 2014 [sbml] \n", "136 Harish Nagarajan 2013 [] \n", "137 Satyakam Dash 2014 [sbml] \n", "138 M. Larocque 2014 [sbml, excel] \n", "139 Chao Ye 2015 [sbml] \n", "140 N. Goyal 2014 [excel] \n", "141 Cheng Wang 2015 [] \n", "142 N. Veith 2014 [] \n", "143 J. Park 2013 [] \n", "\n", " organism \\\n", "0 Escherichia coli str. K12 substr. MG1655 \n", "1 Escherichia coli str. K12 substr. MG1655 \n", "2 Saccharomyces cerevisiae \n", "3 Pseudomonas putida str. KT2440 \n", "4 Pseudomonas aeruginosa str. PAO1 \n", "5 Saccharomyces cerevisiae \n", "6 Saccharomyces cerevisiae str. Sc288 \n", "7 Escherichia coli W \n", "8 Escherichia coli str. K12 substr. MG1655 \n", "9 Yeast \n", "10 Pseudomonas putida str. KT2440 \n", "11 Acinetobacter baumannii AYE \n", "12 Pseudomonas putida str. KT2440 \n", "13 Klebsiella pneumoniae str. MGH 78578 \n", "14 Clostridium thermocellum str. ATCC 27405 \n", "15 Mycobacterium tuberculosis str. H37Rv \n", "16 Clostridium beijerinckii str. NCIMB 8052 \n", "17 Bacillus subtilis 168 \n", "18 Dehalococcoides ethenogenes str. 2061 \n", "19 Methanosarcina barkeri \n", "20 Arabidopsis thaliana \n", "21 Escherichia coli str. K12 substr. MG1655 \n", "22 Helicobacter pylori str. 26695 \n", "23 Saccharomyces cerevisiae str. Sc288 \n", "24 Saccharomyces cerevisiae str. Sc288 \n", "25 Chlamydomonas reinhardtii \n", "26 Staphylococcus aureus \n", "27 Plasmodium falciparum \n", "28 Thermotoga maritima str. MSB8 \n", "29 Homo sapiens \n", ".. ... \n", "114 Spirulina platensis C1 \n", "115 Xanthomonas campestris pv. campestris str. B100 \n", "116 Xanthomonas campestris pv. campestris str. B100 \n", "117 Kluyveromyces lactis NRRL Y-1140 \n", "118 Clostridium acetobutylicum ATCC 824 \n", "119 Thermotoga maritima \n", "120 Bacteroides thetaiotaomicron \n", "121 Saccharopolyspora spinosa NRRL 18395 \n", "122 Cyanothece sp. PCC 7424 \n", "123 Cyanothece sp. PCC 7425 \n", "124 Cyanothece sp. PCC 7822 \n", "125 Cyanothece sp. PCC 8801 \n", "126 Cyanothece sp. PCC 8802 \n", "127 Lactococcus lactis subsp. cremoris MG1363 \n", "128 Aspergillus terreus NIH2624 \n", "129 Bifidobacterium adolescentis L2-32 \n", "130 Faecalibacterium prausnitzii A2-165 \n", "131 Campylobacter jejuni subsp. jejuni NCTC 11168 \n", "132 Thermus thermophilus \n", "133 Ectocarpus siliculosus \n", "134 Pseudoalteromonas haloplanktis TAC125 \n", "135 Arabidopsis thaliana \n", "136 Clostridium ljungdahlii \n", "137 Clostridium acetobutylicum ATCC 824 \n", "138 Clostridium difficile 630 \n", "139 Mortierella alpina \n", "140 Methanococcus maripaludis S2 \n", "141 Pectobacterium carotovorum subsp. carotovorum PC1 \n", "142 Enterococcus faecalis V583 \n", "143 Klebsiella oxytoca \n", "\n", " taxonomy \n", "0 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "1 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "2 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "3 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "4 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "5 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "6 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "7 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "8 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "9 Eukaryota; Opisthokonta; Fungi; \n", "10 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "11 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "12 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "13 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "14 Bacteria; Firmicutes; Clostridia; Clostridial... \n", "15 Bacteria; Actinobacteria; Actinobacteria; Acti... \n", "16 Bacteria; Firmicutes; Clostridia; Clostridiale... \n", "17 Bacteria; Firmicutes; Bacilli; Bacillales; Bac... \n", "18 Bacteria; Chloroflexi; Dehalococcoidetes; Deha... \n", "19 Archaea; Euryarchaeota; Methanomicrobia; Metha... \n", "20 Eukaryota; Viridiplantae; Streptophyta; Strept... \n", "21 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "22 Bacteria; Proteobacteria; delta/epsilon subdi... \n", "23 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "24 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "25 Eukaryota; Viridiplantae; Chlorophyta; Chlorop... \n", "26 Bacteria; Firmicutes; Bacilli; Bacillales; St... \n", "27 Eukaryota; Alveolata; Apicomplexa; Aconoidasid... \n", "28 Bacteria; Thermotogae; Thermotogae; Thermotoga... \n", "29 Eukaryota; Opisthokonta; Metazoa; Eumetazoa; B... \n", ".. ... \n", "114 Bacteria; Cyanobacteria; Oscillatoriophycideae... \n", "115 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "116 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "117 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "118 Bacteria; Firmicutes; Clostridia; Clostridiale... \n", "119 Bacteria; Thermotogae; Thermotogae; Thermotoga... \n", "120 Bacteria; Bacteroidetes/Chlorobi group; Bacter... \n", "121 Bacteria; Actinobacteria; Actinobacteria; Acti... \n", "122 Bacteria; Cyanobacteria; Oscillatoriophycideae... \n", "123 Bacteria; Cyanobacteria; Oscillatoriophycideae... \n", "124 Bacteria; Cyanobacteria; Oscillatoriophycideae... \n", "125 Bacteria; Cyanobacteria; Oscillatoriophycideae... \n", "126 Bacteria; Cyanobacteria; Oscillatoriophycideae... \n", "127 Bacteria; Firmicutes; Bacilli; Lactobacillales... \n", "128 Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... \n", "129 Bacteria; Actinobacteria; Actinobacteria; Acti... \n", "130 Bacteria; Firmicutes; Clostridia; Clostridiale... \n", "131 Bacteria; Proteobacteria; delta/epsilon subdiv... \n", "132 Bacteria; Deinococcus-Thermus; Deinococci; The... \n", "133 Eukaryota; Stramenopiles; PX clade; Phaeophyce... \n", "134 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "135 Eukaryota; Viridiplantae; Streptophyta; Strept... \n", "136 Bacteria; Firmicutes; Clostridia; Clostridiale... \n", "137 Bacteria; Firmicutes; Clostridia; Clostridiale... \n", "138 Bacteria; Firmicutes; Clostridia; Clostridiale... \n", "139 Eukaryota; Opisthokonta; Fungi; Fungi incertae... \n", "140 Archaea; Euryarchaeota; Methanococci; Methanoc... \n", "141 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "142 Bacteria; Firmicutes; Bacilli; Lactobacillales... \n", "143 Bacteria; Proteobacteria; Gammaproteobacteria;... \n", "\n", "[144 rows x 8 columns]" ] }, "execution_count": 11, "metadata": {}, "output_type": "execute_result" } ], "source": [ "models" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": true }, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": true }, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 2", "language": "python", "name": "python2" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 2 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython2", "version": "2.7.6" } }, "nbformat": 4, "nbformat_minor": 0 }