{ "cells": [ { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "# Getting started with cameo " ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "**cameo** reuses and extends model data structures defined by [cobrapy](https://opencobra.github.io/cobrapy/) (**CO**nstraints-**B**ased **R**econstruction and **A**nalysis tool for **Py**thon). So, in addition to following this quick start guide and other **cameo** tutorials, we encourage you to explore cobrapy's [documentation](https://cobrapy.readthedocs.org/en/latest/cobra.core.html) as well." ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "Step 1: Load a model\n", "-------------------\n", "\n", "Loading a model is easy. Just import the `~cameo.io.load_model` function." ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [ { "data": { "text/html": [] }, "metadata": {}, "output_type": "display_data" }, { "data": { "application/javascript": [ "\n", "(function(global) {\n", " function now() {\n", " return new Date();\n", " }\n", "\n", " var force = true;\n", "\n", " if (typeof (window._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n", " window._bokeh_onload_callbacks = [];\n", " window._bokeh_is_loading = undefined;\n", " }\n", "\n", "\n", " \n", " if (typeof (window._bokeh_timeout) === \"undefined\" || force === true) {\n", " window._bokeh_timeout = Date.now() + 5000;\n", " window._bokeh_failed_load = false;\n", " }\n", "\n", " var NB_LOAD_WARNING = {'data': {'text/html':\n", " \"
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" \"Name | \n", "iJO1366 | \n", "
Number of metabolites | \n", "1805 | \n", "
Number of reactions | \n", "2583 | \n", "
Reactions | \n", "4crsol_c --> 5drib_c --> aacald_c --> amob_c --> mththf_c --> oxam_c --> 0.000223 10fthf_c + 0.000223 2dmmql8_c + 2.5e-05 2fe2s_c + 0.000248 4fe4s_c + 0.000223 5mthf_c + 0.000279 accoa_c + 0.000223 adocbl_c + 0.499149 ala__L_c + 0.000223 amet_c + 0.28742 arg__L_c + 0.234232 asn__L_c + 0.234232 asp__L_c + 54.119975 atp_c + 0.000116 bmocogdp_c + 2e-06 btn_c + 0.004952 ca2_c + 0.000223 chor_c + 0.004952 cl_c + 0.002944 clpn160_p + 0.00229 clpn161_p + 0.00118 clpn181_p + 0.000168 coa_c + 2.4e-05 cobalt2_c + 0.008151 colipa_e + 0.129799 ctp_c + 0.000674 cu2_c + 0.088988 cys__L_c + 0.024805 datp_c + 0.025612 dctp_c + 0.025612 dgtp_c + 0.024805 dttp_c + 0.000223 enter_c + 0.000223 fad_c + 0.006388 fe2_c + 0.007428 fe3_c + 0.255712 gln__L_c + 0.255712 glu__L_c + 0.595297 gly_c + 0.154187 glycogen_c + 0.000223 gthrd_c + 0.209121 gtp_c + 48.752916 h2o_c + 0.000223 hemeO_c + 0.092056 his__L_c + 0.282306 ile__L_c + 0.18569 k_c + 0.437778 leu__L_c + 3e-06 lipopb_c + 0.333448 lys__L_c + 3.1e-05 malcoa_c + 0.149336 met__L_c + 0.008253 mg2_c + 0.000223 mlthf_c + 0.000658 mn2_c + 7e-06 mobd_c + 7e-06 mococdp_c + 7e-06 mocogdp_c + 0.000223 mql8_c + 0.001345 murein3p3p_p + 0.000605 murein3px4p_p + 0.005381 murein4p4p_p + 0.005448 murein4px4p_p + 0.000673 murein4px4px4p_p + 0.001787 nad_c + 4.5e-05 nadh_c + 0.000112 nadp_c + 0.000335 nadph_c + 0.012379 nh4_c + 0.000307 ni2_c + 0.012366 pe160_c + 0.031798 pe160_p + 0.009618 pe161_c + 0.024732 pe161_p + 0.004957 pe181_c + 0.012747 pe181_p + 0.005707 pg160_c + 0.004892 pg160_p + 0.004439 pg161_c + 0.003805 pg161_p + 0.002288 pg181_c + 0.001961 pg181_p + 0.180021 phe__L_c + 0.000223 pheme_c + 0.214798 pro__L_c + 0.03327 ptrc_c + 0.000223 pydx5p_c + 0.000223 q8h2_c + 0.000223 ribflv_c + 0.209684 ser__L_c + 0.000223 sheme_c + 0.004126 so4_c + 0.006744 spmd_c + 9.8e-05 succoa_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.246506 thr__L_c + 0.055234 trp__L_c + 0.133993 tyr__L_c + 5.5e-05 udcpdp_c + 0.140101 utp_c + 0.411184 val__L_c + 0.000324 zn2_c --> 53.95 adp_c + 53.95 h_c + 53.945874 pi_c + 0.749831 ppi_c 0.000223 10fthf_c + 2.6e-05 2fe2s_c + 0.000223 2ohph_c + 0.00026 4fe4s_c + 0.513689 ala__L_c + 0.000223 amet_c + 0.295792 arg__L_c + 0.241055 asn__L_c + 0.241055 asp__L_c + 54.124831 atp_c + 0.000122 bmocogdp_c + 2e-06 btn_c + 0.005205 ca2_c + 0.005205 cl_c + 0.000576 coa_c + 2.5e-05 cobalt2_c + 0.133508 ctp_c + 0.000709 cu2_c + 0.09158 cys__L_c + 0.026166 datp_c + 0.027017 dctp_c + 0.027017 dgtp_c + 0.026166 dttp_c + 0.000223 fad_c + 0.006715 fe2_c + 0.007808 fe3_c + 0.26316 gln__L_c + 0.26316 glu__L_c + 0.612638 gly_c + 0.215096 gtp_c + 48.601527 h2o_c + 0.094738 his__L_c + 0.290529 ile__L_c + 0.195193 k_c + 0.019456 kdo2lipid4_e + 0.450531 leu__L_c + 0.343161 lys__L_c + 0.153686 met__L_c + 0.008675 mg2_c + 0.000223 mlthf_c + 0.000691 mn2_c + 7e-06 mobd_c + 0.013894 murein5px4p_p + 0.001831 nad_c + 0.000447 nadp_c + 0.013013 nh4_c + 0.000323 ni2_c + 0.017868 pe160_c + 0.045946 pe160_p + 0.054154 pe161_c + 0.02106 pe161_p + 0.185265 phe__L_c + 0.000223 pheme_c + 0.221055 pro__L_c + 0.000223 pydx5p_c + 0.000223 ribflv_c + 0.215792 ser__L_c + 0.000223 sheme_c + 0.004338 so4_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.253687 thr__L_c + 0.056843 trp__L_c + 0.137896 tyr__L_c + 5.5e-05 udcpdp_c + 0.144104 utp_c + 0.423162 val__L_c + 0.000341 zn2_c --> 53.95 adp_c + 53.95 h_c + 53.945662 pi_c + 0.773903 ppi_c 12ppd__R_e --> 12ppd__S_e --> 14glucan_e --> 15dap_e --> 23camp_e --> 23ccmp_e --> 23cgmp_e --> 23cump_e --> 23dappa_e --> 26dap__M_e --> 2ddglcn_e --> 34dhpac_e --> 3amp_e --> 3cmp_e --> 3gmp_e --> 3hcinnm_e --> 3hpp_e --> 3hpppn_e --> 3ump_e --> 4abut_e --> 4hoxpacd_e --> 5dglcn_e --> 5mtr_e --> LalaDglu_e --> LalaDgluMdap_e --> LalaDgluMdapDala_e --> LalaLglu_e --> ac_e --> acac_e --> acald_e --> acgal_e --> acgal1p_e --> acgam_e --> acgam1p_e --> acmana_e --> acmum_e --> acnam_e --> acolipa_e --> acser_e --> ade_e --> adn_e --> adocbl_e --> ag_e --> agm_e --> akg_e --> ala_B_e --> ala__D_e --> ala__L_e --> alaala_e --> all__D_e --> alltn_e --> amp_e --> anhgm_e --> arab__L_e --> arbt_e --> arbtn_e --> arbtn_fe3_e --> arg__L_e --> ascb__L_e --> asn__L_e --> aso3_e --> asp__L_e --> btn_e --> but_e --> butso3_e --> ca2_e <=> cbi_e --> cbl1_e <=> cd2_e --> cgly_e --> chol_e --> chtbs_e --> cit_e --> cl_e <=> cm_e --> cmp_e --> co2_e <=> cobalt2_e <=> colipa_e --> colipap_e --> cpgn_e --> cpgn_un_e --> crn_e --> crn__D_e --> csn_e --> cu_e --> cu2_e <=> cyan_e --> cynt_e --> cys__D_e --> cys__L_e --> cytd_e --> dad_2_e --> damp_e --> dca_e --> dcmp_e --> dcyt_e --> ddca_e --> dgmp_e --> dgsn_e --> dha_e --> dimp_e --> din_e --> dms_e --> dmso_e --> dopa_e --> doxrbcn_e --> dtmp_e --> dump_e --> duri_e --> eca4colipa_e --> enlipa_e --> enter_e --> etha_e --> ethso3_e --> etoh_e --> f6p_e --> fald_e --> fe2_e <=> fe3_e <=> fe3dcit_e --> fe3dhbzs_e --> fe3hox_e --> fe3hox_un_e --> fecrm_e --> fecrm_un_e --> feenter_e --> feoxam_e --> feoxam_un_e --> for_e --> fru_e --> frulys_e --> fruur_e --> fuc__L_e --> fum_e --> fusa_e --> g1p_e --> g3pc_e --> g3pe_e --> g3pg_e --> g3pi_e --> g3ps_e --> g6p_e --> gal_e --> gal_bD_e --> gal1p_e --> galct__D_e --> galctn__D_e --> galctn__L_e --> galt_e --> galur_e --> gam_e --> gam6p_e --> gbbtn_e --> gdp_e --> glc__D_e <=> glcn_e --> glcr_e --> glcur_e --> glcur1p_e --> gln__L_e --> glu__L_e --> gly_e --> glyald_e --> glyb_e --> glyc_e --> glyc__R_e --> glyc2p_e --> glyc3p_e --> glyclt_e --> gmp_e --> gsn_e --> gthox_e --> gthrd_e --> gtp_e --> gua_e --> h_e <=> h2_e --> h2o_e <=> h2o2_e --> h2s_e --> hacolipa_e --> halipa_e --> hdca_e --> hdcea_e --> hg2_e --> his__L_e --> hom__L_e --> hxa_e --> hxan_e --> idon__L_e --> ile__L_e --> imp_e --> indole_e --> inost_e --> ins_e --> isetac_e --> k_e <=> kdo2lipid4_e --> lac__D_e --> lac__L_e --> lcts_e --> leu__L_e --> lipa_e --> lipa_cold_e --> lipoate_e --> lys__L_e --> lyx__L_e --> mal__D_e --> mal__L_e --> malt_e --> malthx_e --> maltpt_e --> malttr_e --> maltttr_e --> man_e --> man6p_e --> manglyc_e --> melib_e --> meoh_e --> met__D_e --> met__L_e --> metsox_R__L_e --> metsox_S__L_e --> mg2_e <=> mincyc_e --> minohp_e --> mmet_e --> mn2_e <=> mnl_e --> mobd_e <=> mso3_e --> n2o_e --> na1_e <=> nac_e --> nh4_e <=> ni2_e <=> nmn_e --> no_e --> no2_e --> no3_e --> novbcn_e --> o16a4colipa_e --> o2_e <=> o2s_e --> ocdca_e --> ocdcea_e --> octa_e --> orn_e --> orot_e --> pacald_e --> peamn_e --> phe__L_e --> pheme_e --> pi_e <=> pnto__R_e --> ppa_e --> ppal_e --> pppn_e --> ppt_e --> pro__L_e --> progly_e --> psclys_e --> pser__L_e --> ptrc_e --> pydam_e --> pydx_e --> pydxn_e --> pyr_e --> quin_e --> r5p_e --> rfamp_e --> rib__D_e --> rmn_e --> sbt__D_e --> sel_e <=> ser__D_e --> ser__L_e --> skm_e --> slnt_e <=> so2_e --> so3_e --> so4_e <=> spmd_e --> succ_e --> sucr_e --> sulfac_e --> tartr__D_e --> tartr__L_e --> taur_e --> tcynt_e --> thm_e --> thr__L_e --> thrp_e --> thym_e --> thymd_e --> tma_e --> tmao_e --> tre_e --> trp__L_e --> tsul_e --> ttdca_e --> ttdcea_e --> ttrcyc_e --> tungs_e <=> tym_e --> tyr__L_e --> tyrp_e --> uacgam_e --> udpacgal_e --> udpg_e --> udpgal_e --> udpglcur_e --> ump_e --> ura_e --> urea_e --> uri_e --> val__L_e --> xan_e --> xmp_e --> xtsn_e --> xyl__D_e --> xylu__L_e --> zn2_e <=> 12dgr120_p --> 12dgr120_c 12dgr140_p --> 12dgr140_c 12dgr141_p --> 12dgr141_c 12dgr160_p --> 12dgr160_c 12dgr161_p --> 12dgr161_c 12dgr180_p --> 12dgr180_c 12dgr181_p --> 12dgr181_c 12ppd__R_e <=> 12ppd__R_p 12ppd__R_p <=> 12ppd__R_c 12ppd__S_e <=> 12ppd__S_p 12ppd__S_p <=> 12ppd__S_c 14glucan_p + atp_c + h2o_c --> 14glucan_c + adp_c + h_c + pi_c 14glucan_e --> 14glucan_p 23camp_e <=> 23camp_p 23ccmp_e <=> 23ccmp_p 23cgmp_e <=> 23cgmp_p 23cump_e <=> 23cump_p 23dappa_p + h_p --> 23dappa_c + h_c 23dappa_e <=> 23dappa_p 23cump_p + h2o_p --> 3ump_p + h_p 23ccmp_p + h2o_p --> 3cmp_p + h_p 23camp_p + h2o_p --> 3amp_p + h_p 23cgmp_p + h2o_p --> 3gmp_p + h_p 26dap__M_e <=> 26dap__M_p 2ddecg3p_p --> 2ddecg3p_c 2tdecg3p_p --> 2tdecg3p_c 2tdec7eg3p_p --> 2tdec7eg3p_c 2hdecg3p_p --> 2hdecg3p_c 2hdec9eg3p_p --> 2hdec9eg3p_c 2odecg3p_p --> 2odecg3p_c 2odec11eg3p_p --> 2odec11eg3p_c 2agpe120_p --> 2agpe120_c 2agpe140_p --> 2agpe140_c 2agpe141_p --> 2agpe141_c 2agpe160_p --> 2agpe160_c 2agpe161_p --> 2agpe161_c 2agpe180_p --> 2agpe180_c 2agpe181_p --> 2agpe181_c 2agpe120_c + atp_c + ddca_c --> amp_c + pe120_c + ppi_c 2agpe140_c + atp_c + ttdca_c --> amp_c + pe140_c + ppi_c 2agpe141_c + atp_c + ttdcea_c --> amp_c + pe141_c + ppi_c 2agpe160_c + atp_c + hdca_c --> amp_c + pe160_c + ppi_c 2agpe161_c + atp_c + hdcea_c --> amp_c + pe161_c + ppi_c 2agpe180_c + atp_c + ocdca_c --> amp_c + pe180_c + ppi_c 2agpe181_c + atp_c + ocdcea_c --> amp_c + pe181_c + ppi_c 2agpg120_p --> 2agpg120_c 2agpg140_p --> 2agpg140_c 2agpg141_p --> 2agpg141_c 2agpg160_p --> 2agpg160_c 2agpg161_p --> 2agpg161_c 2agpg180_p --> 2agpg180_c 2agpg181_p --> 2agpg181_c 2agpg120_c + atp_c + ddca_c --> amp_c + pg120_c + ppi_c 2agpg140_c + atp_c + ttdca_c --> amp_c + pg140_c + ppi_c 2agpg141_c + atp_c + ttdcea_c --> amp_c + pg141_c + ppi_c 2agpg160_c + atp_c + hdca_c --> amp_c + pg160_c + ppi_c 2agpg161_c + atp_c + hdcea_c --> amp_c + pg161_c + ppi_c 2agpg180_c + atp_c + ocdca_c --> amp_c + pg180_c + ppi_c 2agpg181_c + atp_c + ocdcea_c --> amp_c + pg181_c + ppi_c 2dhguln_c + h_c + nadh_c --> glcn_c + nad_c 2dhguln_c + h_c + nadph_c --> glcn_c + nadp_c 2dhguln_c + h_c + nadh_c --> idon__L_c + nad_c 2dhguln_c + h_c + nadph_c --> idon__L_c + nadp_c 2mahmp_c + h2o_c --> 4ampm_c + h_c + pi_c 34dhpac_e <=> 34dhpac_p 3amac_c + h2o_c + h_c --> msa_c + nh4_c 3amp_e <=> 3amp_p 3cmp_e <=> 3cmp_p 3gmp_e <=> 3gmp_p 3hdecACP_c --> h2o_c + tdec2eACP_c 3hddecACP_c --> h2o_c + tddec2eACP_c 3hcddec5eACP_c --> h2o_c + t3c5ddeceACP_c 3hmrsACP_c --> h2o_c + tmrs2eACP_c 3hcmrs7eACP_c --> h2o_c + t3c7mrseACP_c 3hpalmACP_c --> h2o_c + tpalm2eACP_c 3hcpalm9eACP_c --> h2o_c + t3c9palmeACP_c 3hoctaACP_c --> h2o_c + toctd2eACP_c 3hcvac11eACP_c --> h2o_c + t3c11vaceACP_c 3haACP_c --> but2eACP_c + h2o_c 3hhexACP_c --> h2o_c + thex2eACP_c 3hoctACP_c --> h2o_c + toct2eACP_c 3hcinnm_c + h_c + nadh_c + o2_c --> dhcinnm_c + h2o_c + nad_c 3hpppn_c + h_c + nadh_c + o2_c --> dhpppn_c + h2o_c + nad_c 3hpp_e <=> 3hpp_p 3hpp_c + h_c --> 3hpp_p + h_p 3dhguln_c + atp_c --> 3dhgulnp_c + adp_c + h_c 3ump_p + h2o_p --> pi_p + uri_p 3cmp_p + h2o_p --> cytd_p + pi_p 3amp_p + h2o_p --> adn_p + pi_p 3gmp_p + h2o_p --> gsn_p + pi_p 3odecACP_c + h_c + nadph_c <=> 3hdecACP_c + nadp_c 3oddecACP_c + h_c + nadph_c <=> 3hddecACP_c + nadp_c 3ocddec5eACP_c + h_c + nadph_c --> 3hcddec5eACP_c + nadp_c 3omrsACP_c + h_c + nadph_c <=> 3hmrsACP_c + nadp_c 3ocmrs7eACP_c + h_c + nadph_c --> 3hcmrs7eACP_c + nadp_c 3opalmACP_c + h_c + nadph_c <=> 3hpalmACP_c + nadp_c 3ocpalm9eACP_c + h_c + nadph_c --> 3hcpalm9eACP_c + nadp_c 3ooctdACP_c + h_c + nadph_c <=> 3hoctaACP_c + nadp_c 3ocvac11eACP_c + h_c + nadph_c --> 3hcvac11eACP_c + nadp_c actACP_c + h_c + nadph_c <=> 3haACP_c + nadp_c 3ohexACP_c + h_c + nadph_c <=> 3hhexACP_c + nadp_c 3ooctACP_c + h_c + nadph_c <=> 3hoctACP_c + nadp_c h_c + malACP_c + ocACP_c --> 3odecACP_c + ACP_c + co2_c dcaACP_c + h_c + malACP_c --> 3oddecACP_c + ACP_c + co2_c cdec3eACP_c + h_c + malACP_c --> 3ocddec5eACP_c + ACP_c + co2_c ddcaACP_c + h_c + malACP_c --> 3omrsACP_c + ACP_c + co2_c cddec5eACP_c + h_c + malACP_c --> 3ocmrs7eACP_c + ACP_c + co2_c h_c + malACP_c + myrsACP_c --> 3opalmACP_c + ACP_c + co2_c h_c + malACP_c + tdeACP_c --> 3ocpalm9eACP_c + ACP_c + co2_c h_c + malACP_c + palmACP_c --> 3ooctdACP_c + ACP_c + co2_c h_c + hdeACP_c + malACP_c --> 3ocvac11eACP_c + ACP_c + co2_c butACP_c + h_c + malACP_c --> 3ohexACP_c + ACP_c + co2_c h_c + hexACP_c + malACP_c --> 3ooctACP_c + ACP_c + co2_c coa_c + oxadpcoa_c --> accoa_c + succoa_c LalaDgluMdap_p + atp_c + h2o_c --> LalaDgluMdap_c + adp_c + h_c + pi_c LalaDgluMdap_e <=> LalaDgluMdap_p 3ump_e <=> 3ump_p dopa_p + h2o_p + o2_p --> 34dhpac_p + h2o2_p + nh4_p 4hoxpacd_e <=> 4hoxpacd_p h2o_c + phthr_c --> 4hthr_c + pi_c LalaDgluMdapDala_c + h2o_c --> LalaDgluMdap_c + ala__D_c LalaDgluMdapDala_p + h2o_p --> LalaDgluMdap_p + ala__D_p LalaDgluMdapDala_p + atp_c + h2o_c --> LalaDgluMdapDala_c + adp_c + h_c + pi_c LalaDgluMdapDala_e <=> LalaDgluMdapDala_p 5dglcn_c + h_c + nadph_c <=> glcn_c + nadp_c 5dglcn_p + h_p <=> 5dglcn_c + h_c 5dglcn_e <=> 5dglcn_p dad_5_c + h2o_c --> 5drib_c + ade_c 5mtr_e <=> 5mtr_p 5mtr_c + h_c --> 5mtr_p + h_p ru5p__D_c <=> ara5p_c ACP_c + atp_c + ttdca_c --> amp_c + myrsACP_c + ppi_c ACP_c + atp_c + ttdcea_c --> amp_c + ppi_c + tdeACP_c ACP_c + atp_c + hdca_c --> amp_c + palmACP_c + ppi_c ACP_c + atp_c + hdcea_c --> amp_c + hdeACP_c + ppi_c ACP_c + atp_c + ocdcea_c --> amp_c + octeACP_c + ppi_c ACP_c + atp_c + ocdca_c --> amp_c + ocdcaACP_c + ppi_c ACP_c + atp_c + ddca_c --> amp_c + ddcaACP_c + ppi_c ACP_c + atp_c + dca_c --> amp_c + dcaACP_c + ppi_c ACP_c + atp_c + octa_c --> amp_c + ocACP_c + ppi_c aact_c + h2o_c + o2_c --> h2o2_c + mthgxl_c + nh4_c dtdp4aaddg_c + unagamu_c --> dtdp_c + h_c + unagamuf_c 14glucan_c --> malthx_c 14glucan_p --> malthx_p arbt6p_c + h2o_c --> g6p_c + hqn_c 4abut_c + akg_c --> glu__L_c + sucsal_c 4abutn_c + h2o_c + nad_c --> 4abut_c + 2.0 h_c + nadh_c 4abut_p + h_p --> 4abut_c + h_c 4abut_e <=> 4abut_p acac_c + accoa_c --> aacoa_c + ac_c 2.0 accoa_c <=> aacoa_c + coa_c accoa_c + btcoa_c <=> 3ohcoa_c + coa_c accoa_c + hxcoa_c <=> 3oocoa_c + coa_c accoa_c + occoa_c <=> 3odcoa_c + coa_c accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c 3ohodcoa_c + coa_c <=> accoa_c + pmtcoa_c acac_p + h_p <=> acac_c + h_c acac_e <=> acac_p acald_c + coa_c + nad_c <=> accoa_c + h_c + nadh_c acald_e <=> acald_p acald_p <=> acald_c accoa_c + anth_c --> acanth_c + coa_c adocbip_c + gtp_c + h_c --> agdpcbi_c + ppi_c accoa_c + atp_c + hco3_c --> adp_c + h_c + malcoa_c + pi_c atp_c + coa_c + ppa_c --> adp_c + pi_c + ppcoa_c acgal1p_p + h2o_p --> acgal_p + pi_p acgal1p_e <=> acgal1p_p acgal_e <=> acgal_p acgam1p_p + h2o_p --> acgam_p + pi_p acgam1p_e <=> acgam1p_p acgam_c + atp_c --> acgam6p_c + adp_c + h_c uacgam_c + udcpp_c --> ump_c + unaga_c acgam_p + pep_c --> acgam6p_c + pyr_c acgam_e <=> acgam_p acglu_c + atp_c --> acg5p_c + adp_c accoa_c + glu__L_c --> acglu_c + coa_c + h_c 2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c ac_c + atp_c <=> actp_c + adp_c h_c + 2.0 pyr_c --> alac__S_c + co2_c acmum6p_c + h2o_c --> acgam6p_c + lac__D_c uacmamu_c + unaga_c --> h_c + udp_c + unagamu_c acmana_p + pep_c --> acmanap_c + pyr_c acmana_e <=> acmana_p acmum_p + pep_c --> acmum6p_c + pyr_c acmum_e --> acmum_p acnam_p + h_p --> acnam_c + h_c acnam_e <=> acnam_p acnam_c --> acmana_c + pyr_c btcoa_c + fad_c <=> b2coa_c + fadh2_c fad_c + hxcoa_c <=> fadh2_c + hx2coa_c fad_c + occoa_c <=> fadh2_c + oc2coa_c dcacoa_c + fad_c <=> dc2coa_c + fadh2_c ddcacoa_c + fad_c <=> dd2coa_c + fadh2_c fad_c + tdcoa_c <=> fadh2_c + td2coa_c fad_c + pmtcoa_c <=> fadh2_c + hdd2coa_c fad_c + stcoa_c <=> fadh2_c + od2coa_c ACP_c + accoa_c <=> acACP_c + coa_c acorn_c + h2o_c --> ac_c + orn_c acolipa_p + atp_c + h2o_c --> acolipa_e + adp_c + h_c + pi_c acon_T_c <=> acon_C_c acon_T_c + amet_c --> aconm_c + ahcys_c cit_c <=> acon_C_c + h2o_c acon_C_c + h2o_c <=> icit_c acorn_c + akg_c <=> acg5sa_c + glu__L_c ddcaACP_c + h_c + pi_c --> ACP_c + ddcap_c h_c + myrsACP_c + pi_c --> ACP_c + ttdcap_c h_c + pi_c + tdeACP_c --> ACP_c + ttdceap_c h_c + palmACP_c + pi_c --> ACP_c + hdcap_c h_c + hdeACP_c + pi_c --> ACP_c + hdceap_c h_c + ocdcaACP_c + pi_c --> ACP_c + ocdcap_c h_c + octeACP_c + pi_c --> ACP_c + ocdceap_c apoACP_c + coa_c --> ACP_c + h_c + pap_c ac_c + atp_c + coa_c --> accoa_c + amp_c + ppi_c acser_e <=> acser_p acser_c --> acser_p ac_p + h_p <=> ac_c + h_c ac_p + na1_p --> ac_c + na1_c ac_e <=> ac_p adn_c + h2o_c + h_c --> ins_c + nh4_c 4adcho_c --> 4abz_c + h_c + pyr_c chor_c + gln__L_c --> 4adcho_c + glu__L_c ade_c + h2o_c + h_c --> hxan_c + nh4_c ade_p + h_p <=> ade_c + h_c ade_e <=> ade_p amp_c + atp_c <=> 2.0 adp_c amp_c + gtp_c <=> adp_c + gdp_c amp_c + itp_c <=> adp_c + idp_c amet_c + h_c --> ametam_c + co2_c atp_c --> camp_c + ppi_c adn_c + atp_c --> adp_c + amp_c + h_c adn_c + h2o_c --> ade_c + rib__D_c adn_p + h_p --> adn_c + h_c adn_p + h_p <=> adn_c + h_c adn_e <=> adn_p adocbi_c + atp_c --> adocbip_c + adp_c + h_c agdpcbi_c + rdmbzi_c --> adocbl_c + gmp_c + h_c adocbl_p + atp_c + h2o_c --> adocbl_c + adp_c + h_c + pi_c adocbl_e + h_p --> adocbl_p + h_c adprib_c + h2o_c --> amp_c + 2.0 h_c + r5p_c ade_c + prpp_c --> amp_c + ppi_c aps_c + atp_c --> adp_c + h_c + paps_c dcamp_c <=> amp_c + fum_c 25aics_c <=> aicar_c + fum_c asp__L_c + gtp_c + imp_c --> dcamp_c + gdp_c + 2.0 h_c + pi_c acgam6p_c + h2o_c --> ac_c + gam6p_c anhgm3p_c + h2o_c --> LalaDgluMdap_c + anhgm_c anhgm3p_p + h2o_p --> LalaDgluMdap_p + anhgm_p anhgm3p_c + h2o_c --> acgam_c + anhm3p_c anhgm3p_p + h_p --> anhgm3p_c + h_c anhgm4p_c + h2o_c --> LalaDgluMdapDala_c + anhgm_c anhgm4p_p + h2o_p --> LalaDgluMdapDala_p + anhgm_p anhgm4p_c + h2o_c --> ala__D_c + anhgm3p_c anhgm4p_p + h2o_p --> ala__D_p + anhgm3p_p anhgm4p_c + h2o_c --> acgam_c + anhm4p_c anhgm4p_p + h_p --> anhgm4p_c + h_c anhgm_c + h2o_c --> acgam_c + anhm_c adphep_DD_c --> adphep_LD_c agm_c + h2o_c --> ptrc_c + urea_c anhgm_p + h_p --> anhgm_c + h_c agm_e <=> agm_p 1ddecg3p_c + ddcaACP_c --> ACP_c + pa120_c 1tdecg3p_c + myrsACP_c --> ACP_c + pa140_c 1tdec7eg3p_c + tdeACP_c --> ACP_c + pa141_c 1hdecg3p_c + palmACP_c --> ACP_c + pa160_c 1hdec9eg3p_c + hdeACP_c --> ACP_c + pa161_c 1odecg3p_c + ocdcaACP_c --> ACP_c + pa180_c 1odec11eg3p_c + octeACP_c --> ACP_c + pa181_c acg5sa_c + nadp_c + pi_c <=> acg5p_c + h_c + nadph_c ag_c + h_e --> ag_e + h_c ahcys_c + h2o_c --> ade_c + rhcys_c 10fthf_c + aicar_c <=> fprica_c + thf_c air_c + atp_c + hco3_c --> 5caiz_c + adp_c + h_c + pi_c 5aizc_c <=> 5caiz_c akg_c + coa_c + nad_c --> co2_c + nadh_c + succoa_c akg_p + h_p <=> akg_c + h_c akg_e <=> akg_p alaala_c + h2o_c --> 2.0 ala__D_c alaala_p + atp_c + h2o_c --> adp_c + alaala_c + h_c + pi_c 2.0 ala__D_c + atp_c <=> adp_c + alaala_c + h_c + pi_c alaala_e <=> alaala_p LalaDglu_c <=> LalaLglu_c ala__L_c <=> ala__D_c ala__D_c + pydx5p_c --> pyam5p_c + pyr_c akg_c + ala__L_c <=> glu__L_c + pyr_c ala__L_c + pydx5p_c --> pyam5p_c + pyr_c ala__L_c + atp_c + trnaala_c --> alatrna_c + amp_c + ppi_c ala__L_p + atp_c + h2o_c --> adp_c + ala__L_c + h_c + pi_c ala__L_p + h_p --> ala__L_c + h_c ala__L_p + h_p <=> ala__L_c + h_c ala__L_p + na1_p --> ala__L_c + na1_c ala__L_e <=> ala__L_p glyald_c + h_c + nadh_c <=> glyc_c + nad_c etoh_c + nad_c <=> acald_c + h_c + nadh_c h2o_c + nad_c + pacald_c <=> 2.0 h_c + nadh_c + pac_c acald_c + h2o_c + nad_c --> ac_c + 2.0 h_c + nadh_c acald_c + h2o_c + nadp_c --> ac_c + 2.0 h_c + nadph_c h2o_c + nadp_c + ppal_c --> 2.0 h_c + nadph_c + ppa_c btal_c + h2o_c + nad_c --> but_c + 2.0 h_c + nadh_c all__D_c + atp_c --> adp_c + all6p_c + h_c all6p_c <=> allul6p_c alltt_c + 2.0 h2o_c + 2.0 h_c --> co2_c + 2.0 nh4_c + urdglyc_c alltn_c + h2o_c --> alltt_c + h_c alltn_p + h_p <=> alltn_c + h_c alltn_e <=> alltn_p allul6p_c <=> f6p_c all__D_p + atp_c + h2o_c --> adp_c + all__D_c + h_c + pi_c all__D_e <=> all__D_p alpp_p + pe160_p --> 2agpe160_p + lpp_p alpp_p + pg160_p --> 2agpg160_p + lpp_p h_c + mthgxl_c + nadph_c --> acetol_c + nadp_c acetol_c + h_c + nadh_c --> 12ppd__R_c + nad_c altrn_c --> 2ddglcn_c + h2o_c anhm3p_c + h2o_c --> LalaDgluMdap_c + anhm_c anhm4p_c + h2o_c --> LalaDgluMdapDala_c + anhm_c anhm4p_c + h2o_c --> ala__D_c + anhm3p_c malt_c + malttr_c --> glc__D_c + maltttr_c malt_c + maltttr_c --> glc__D_c + maltpt_c malt_c + maltpt_c --> glc__D_c + malthx_c malt_c + malthx_c --> glc__D_c + malthp_c acmanap_c <=> acgam6p_c acmana_c + atp_c --> acmanap_c + adp_c + h_c 8aonn_c + amet_c <=> amob_c + dann_c 2dmmql8_c + amet_c --> ahcys_c + h_c + mql8_c air_c + h2o_c + nad_c --> 4ampm_c + 2.0 for_c + 3.0 h_c + nadh_c amp_c + h2o_c --> ade_c + r5p_c cgly_c + h2o_c --> cys__L_c + gly_c h2o_c + progly_c --> gly_c + pro__L_c amp_e <=> amp_p anhgm_e <=> anhgm_p anhm_c + atp_c + h2o_c --> acmum6p_c + adp_c + h_c anth_c + prpp_c --> ppi_c + pran_c chor_c + gln__L_c --> anth_c + glu__L_c + h_c + pyr_c 2aobut_c + h_c --> aact_c + co2_c ala__L_c + pimACP_c --> 8aonn_c + ACP_c + co2_c ap4a_c + h2o_c --> 2.0 adp_c + 2.0 h_c 2.0 atp_c + h_c --> ap4a_c + ppi_c ap5a_c + h2o_c --> adp_c + atp_c + 2.0 h_c 15dap_c + ametam_c --> 5mta_c + h_c + na15dap_c ddcap_c + glyc3p_c --> 1ddecg3p_c + h_c + pi_c glyc3p_c + ttdcap_c --> 1tdecg3p_c + h_c + pi_c glyc3p_c + ttdceap_c --> 1tdec7eg3p_c + h_c + pi_c glyc3p_c + hdcap_c --> 1hdecg3p_c + h_c + pi_c glyc3p_c + hdceap_c --> 1hdec9eg3p_c + h_c + pi_c glyc3p_c + ocdcap_c --> 1odecg3p_c + h_c + pi_c glyc3p_c + ocdceap_c --> 1odec11eg3p_c + h_c + pi_c ddcap_c + h2o_c --> ddca_c + 2.0 h_c + pi_c h2o_c + ttdcap_c --> 2.0 h_c + pi_c + ttdca_c h2o_c + ttdceap_c --> 2.0 h_c + pi_c + ttdcea_c h2o_c + hdcap_c --> 2.0 h_c + hdca_c + pi_c h2o_c + hdceap_c --> 2.0 h_c + hdcea_c + pi_c h2o_c + ocdcap_c --> 2.0 h_c + ocdca_c + pi_c h2o_c + ocdceap_c --> 2.0 h_c + ocdcea_c + pi_c aact_c + h_c + nadh_c <=> appl_c + nad_c 5apru_c + h_c + nadph_c --> 5aprbu_c + nadp_c arab__L_c <=> rbl__L_c 2.0 arbtn_fe3_c + fadh2_c --> 2.0 arbtn_c + fad_c + 2.0 fe2_c + 2.0 h_c 2.0 arbtn_fe3_c + fmnh2_c --> 2.0 arbtn_c + 2.0 fe2_c + fmn_c + 2.0 h_c 2.0 arbtn_fe3_c + rbflvrd_c --> 2.0 arbtn_c + 2.0 fe2_c + 2.0 h_c + ribflv_c arbtn_fe3_p + atp_c + h2o_c --> adp_c + arbtn_fe3_c + h_c + pi_c arbtn_e + fe3_e --> arbtn_fe3_e arbtn_p + h_p --> arbtn_e + h_c arbtn_fe3_e + h_p --> arbtn_fe3_p + h_c arbtn_c + h_p --> arbtn_p + h_c arbt_p + pep_c --> arbt6p_c + pyr_c arbt_e --> arbt_p arab__L_p + atp_c + h2o_c --> adp_c + arab__L_c + h_c + pi_c arab__L_p + h_p <=> arab__L_c + h_c arab__L_c + h_p --> arab__L_p + h_c arab__L_e <=> arab__L_p agm_c + arg__L_p <=> agm_p + arg__L_c arg__L_c + h_c --> agm_c + co2_c arg__L_p + h_p --> agm_p + co2_p arg__L_p + orn_c <=> arg__L_c + orn_p argsuc_c <=> arg__L_c + fum_c asp__L_c + atp_c + citr__L_c --> amp_c + argsuc_c + h_c + ppi_c arg__L_c + atp_c + trnaarg_c --> amp_c + argtrna_c + ppi_c arg__L_p + atp_c + h2o_c --> adp_c + arg__L_c + h_c + pi_c arg__L_c + h_p --> arg__L_p + h_c arg__L_e <=> arg__L_p aspsa_c + nadp_c + pi_c <=> 4pasp_c + h_c + nadph_c ascb6p_c + h2o_c --> 3dhgulnp_c + h_c ascb__L_p + pep_c --> ascb6p_c + pyr_c ascb__L_e <=> ascb__L_p asn__L_c + h2o_c --> asp__L_c + nh4_c asn__L_p + h2o_p --> asp__L_p + nh4_p asp__L_c + atp_c + gln__L_c + h2o_c --> amp_c + asn__L_c + glu__L_c + h_c + ppi_c asp__L_c + atp_c + nh4_c --> amp_c + asn__L_c + h_c + ppi_c asn__L_c + atp_c + trnaasn_c --> amp_c + asntrna_c + ppi_c asn__L_p + atp_c + h2o_c --> adp_c + asn__L_c + h_c + pi_c asn__L_p + h_p <=> asn__L_c + h_c asn__L_e <=> asn__L_p aso3_c + atp_c + h2o_c --> adp_c + aso3_p + h_c + pi_c aso3_e <=> aso3_p asp__L_c + h_c --> ala_B_c + co2_c asp__L_c + cbp_c --> cbasp_c + h_c + pi_c asp__L_c + atp_c <=> 4pasp_c + adp_c asp__L_c + q8_c --> h_c + iasp_c + q8h2_c asp__L_c + mqn8_c --> h_c + iasp_c + mql8_c asp__L_c + fum_c --> h_c + iasp_c + succ_c asp__L_c + o2_c --> h2o2_c + h_c + iasp_c asp__L_c --> fum_c + nh4_c akg_c + asp__L_c <=> glu__L_c + oaa_c asp__L_c + atp_c + trnaasp_c --> amp_c + asptrna_c + ppi_c asp__L_p + atp_c + h2o_c --> adp_c + asp__L_c + h_c + pi_c asp__L_p + 2.0 h_p --> asp__L_c + 2.0 h_c asp__L_p + 3.0 h_p --> asp__L_c + 3.0 h_c asp__L_p + h_p --> asp__L_c + h_c asp__L_p + h_p <=> asp__L_c + h_c asp__L_e <=> asp__L_p aso4_c + 2.0 gthrd_c --> aso3_c + gthox_c + h2o_c arg__L_c + succoa_c --> coa_c + h_c + sucarg_c athr__L_c + nadp_c <=> 2aobut_c + h_c + nadph_c atp_c + h2o_c + h_c --> itp_c + nh4_c atp_c + h2o_c --> adp_c + h_c + pi_c atp_c + prpp_c --> ppi_c + prbatp_c adp_c + 4.0 h_p + pi_c <=> atp_c + h2o_c + 3.0 h_c ala_B_p + h_p --> ala_B_c + h_c ala_B_e <=> ala_B_p betald_c + h2o_c + nad_c --> glyb_c + 2.0 h_c + nadh_c betald_c + h2o_c + nadp_c --> glyb_c + 2.0 h_c + nadph_c moco_c + mptamp_c --> amp_c + bmoco_c + cu2_c bmoco_c + gtp_c + h_c --> bmoco1gdp_c + ppi_c bmoco1gdp_c + gtp_c + h_c --> bmocogdp_c + ppi_c h2o_c + pap_c --> amp_c + pi_c btnso_c + h_c + nadh_c --> btn_c + h2o_c + nad_c btnso_c + h_c + nadph_c --> btn_c + h2o_c + nadp_c btn_p + h_p --> btn_c + h_c btn_e <=> btn_p 2fe2s_c + amet_c + dtbt_c --> 2fe1s_c + btn_c + dad_5_c + h_c + met__L_c accoa_c + but_c --> ac_c + btcoa_c atp_c + butso3_p + h2o_c --> adp_c + butso3_c + h_c + pi_c butso3_e <=> butso3_p but_p + h_p <=> but_c + h_c but_e <=> but_p bwco_c + gtp_c + h_c --> bwco1gdp_c + ppi_c bwco1gdp_c + gtp_c + h_c --> bwcogdp_c + ppi_c mptamp_c + wco_c --> amp_c + bwco_c + cu2_c ca2_c + h_p --> ca2_p + h_c ca2_e <=> ca2_p 15dap_c + h_p + lys__L_p --> 15dap_p + h_c + lys__L_c 2.0 h2o2_c --> 2.0 h2o_c + o2_c ca2_c + na1_p <=> ca2_p + na1_c atp_c + cbi_c + h_c <=> adocbi_c + pppi_c cbi_e + h_p --> cbi_p + h_c atp_c + cbi_p + h2o_c --> adp_c + cbi_c + h_c + pi_c atp_c + cbl1_p + h2o_c --> adp_c + cbl1_c + h_c + pi_c cbl1_e + h_p --> cbl1_p + h_c atp_c + cbl1_c + h_c <=> adocbl_c + pppi_c cbm_c + 2.0 h_c --> co2_c + nh4_c atp_c + co2_c + nh4_c <=> adp_c + cbp_c + 2.0 h_c 2.0 atp_c + gln__L_c + h2o_c + hco3_c --> 2.0 adp_c + cbp_c + glu__L_c + 2.0 h_c + pi_c atp_c + cdg_c + nh4_c --> adp_c + h2o_c + h_c + pi_c + preq0_c atp_c + cd2_c + h2o_c --> adp_c + cd2_p + h_c + pi_c cd2_c + h_p --> cd2_p + h_c cd2_e <=> cd2_p cd2_p --> cd2_c cdpdddecg_c + h2o_c --> cmp_c + 2.0 h_c + pa120_c cdpdtdecg_c + h2o_c --> cmp_c + 2.0 h_c + pa140_c cdpdtdec7eg_c + h2o_c --> cmp_c + 2.0 h_c + pa141_c cdpdhdecg_c + h2o_c --> cmp_c + 2.0 h_c + pa160_c cdpdhdec9eg_c + h2o_c --> cmp_c + 2.0 h_c + pa161_c cdpdodecg_c + h2o_c --> cmp_c + 2.0 h_c + pa180_c cdpdodec11eg_c + h2o_c --> cmp_c + 2.0 h_c + pa181_c 3.0 h_c + 2.0 nadph_c + preq0_c --> 2.0 nadp_c + preq1_c cph4_c + h_c --> cdg_c + nh4_c 4c2me_c + atp_c --> 2p4c2me_c + adp_c + h_c 2.0 amet_c + pe161_c --> 2.0 ahcys_c + cpe160_c + 2.0 h_c 2.0 amet_c + pg161_c --> 2.0 ahcys_c + cpg160_c + 2.0 h_c 2.0 amet_c + pe181_c --> 2.0 ahcys_c + cpe180_c + 2.0 h_c 2.0 amet_c + pg181_c --> 2.0 ahcys_c + cpg180_c + 2.0 h_c atp_c + cgly_p + h2o_c --> adp_c + cgly_c + h_c + pi_c cgly_e <=> cgly_p atp_c + chol_p + h2o_c --> adp_c + chol_c + h_c + pi_c chol_p + h_p --> chol_c + h_c chol_e <=> chol_p chol_c + nad_c --> betald_c + h_c + nadh_c chor_c --> pphn_c 3psme_c --> chor_c + pi_c chor_c --> 4hbz_c + pyr_c chtbs_p + pep_c --> chtbs6p_c + pyr_c chtbs_e <=> chtbs_p cinnm_c + h_c + nadh_c + o2_c --> cenchddd_c + nad_c cit_c --> ac_c + oaa_c cit_c + h_p --> cit_p + h_c cit_p + succ_c --> cit_c + succ_p cit_e <=> cit_p atp_c + h2o_c + lipa_cold_p --> adp_c + h_c + lipa_cold_e + pi_c clpn120_p + h2o_p --> h_p + pa120_p + pg120_p clpn140_p + h2o_p --> h_p + pa140_p + pg140_p clpn141_p + h2o_p --> h_p + pa141_p + pg141_p clpn160_p + h2o_p --> h_p + pa160_p + pg160_p clpn161_p + h2o_p --> h_p + pa161_p + pg161_p clpn180_p + h2o_p --> h_p + pa180_p + pg180_p clpn181_p + h2o_p --> h_p + pa181_p + pg181_p 2.0 pg120_p <=> clpn120_p + glyc_p 2.0 pg140_p <=> clpn140_p + glyc_p 2.0 pg141_p <=> clpn141_p + glyc_p 2.0 pg160_p <=> clpn160_p + glyc_p 2.0 pg161_p <=> clpn161_p + glyc_p 2.0 pg180_p <=> clpn180_p + glyc_p 2.0 pg181_p <=> clpn181_p + glyc_p 2.0 cl_p + h_c --> 2.0 cl_c + h_p cl_e <=> cl_p cmp_c + h2o_c --> csn_c + r5p_c cmp_e <=> cmp_p cm_e <=> cm_p cm_p + h_p --> cm_e + h_c co2_e <=> co2_p co2_p <=> co2_c atp_c + cobalt2_c + h2o_c --> adp_c + cobalt2_p + h_c + pi_c cobalt2_c + h_p --> cobalt2_p + h_c cobalt2_e <=> cobalt2_p cobalt2_p --> cobalt2_c colipa_p + udcpdp_p --> colipap_p + udcpp_p atp_c + colipap_p + h2o_c --> adp_c + colipap_e + h_c + pi_c atp_c + colipa_c + h2o_c --> adp_c + colipa_p + h_c + pi_c atp_c + colipa_p + h2o_c --> adp_c + colipa_e + h_c + pi_c 2.0 cpgn_c + fadh2_c --> 2.0 cpgn_un_c + fad_c + 2.0 fe2_c + 2.0 h_c 2.0 cpgn_c + fmnh2_c --> 2.0 cpgn_un_c + 2.0 fe2_c + fmn_c + 2.0 h_c 2.0 cpgn_c + rbflvrd_c --> 2.0 cpgn_un_c + 2.0 fe2_c + 2.0 h_c + ribflv_c cpgn_un_p + h_p --> cpgn_un_e + h_c cpgn_un_c + h_p --> cpgn_un_p + h_c atp_c + cpgn_p + h2o_c --> adp_c + cpgn_c + h_c + pi_c cpgn_un_e + fe3_e --> cpgn_e cpgn_e + h_p --> cpgn_p + h_c ahdt_c + h2o_c --> acald_c + cph4_c + h_c + pppi_c gtp_c + h2o_c --> cpmp_c + ppi_c cpppg3_c + 2.0 h_c + o2_c --> 2.0 co2_c + 2.0 h2o_c + pppg9_c 2.0 amet_c + cpppg3_c --> 2.0 co2_c + 2.0 dad_5_c + 2.0 met__L_c + pppg9_c bbtcoa_c + crn_c <=> crncoa_c + gbbtn_c atp_c + coa_c + crn_c --> adp_c + crncoa_c + pi_c crncoa_c <=> crnDcoa_c crn_c + ctbtcoa_c <=> crncoa_c + ctbt_c crncoa_c <=> ctbtcoa_c + h2o_c atp_c + coa_c + crn__D_c --> adp_c + crnDcoa_c + pi_c atp_c + crn__D_p + h2o_c --> adp_c + crn__D_c + h_c + pi_c crn__D_p + h_p <=> crn__D_c + h_c crn__D_e <=> crn__D_p atp_c + crn_p + h2o_c --> adp_c + crn_c + h_c + pi_c crn_p + h_p <=> crn_c + h_c crn_p + gbbtn_c --> crn_c + gbbtn_p crn__D_c + crn_p --> crn__D_p + crn_c crn_e <=> crn_p accoa_c + h2o_c + oaa_c --> cit_c + coa_c + h_c csn_c + h2o_c + h_c --> nh4_c + ura_c csn_p + h_p --> csn_c + h_c csn_e <=> csn_p atp_c + coa_c + ctbt_c --> adp_c + ctbtcoa_c + pi_c atp_c + ctbt_p + h2o_c --> adp_c + ctbt_c + h_c + pi_c ctbt_p + h_p <=> ctbt_c + h_c tdecoa_c <=> td2coa_c hdcoa_c <=> hdd2coa_c odecoa_c <=> od2coa_c atp_c + gln__L_c + h2o_c + utp_c --> adp_c + ctp_c + glu__L_c + 2.0 h_c + pi_c 4.0 cu_p + 4.0 h_p + o2_p --> 4.0 cu2_p + 2.0 h2o_p atp_c + cu_c + h2o_c --> adp_c + cu_p + h_c + pi_c atp_c + cu2_c + h2o_c --> adp_c + cu2_p + h_c + pi_c cu2_e <=> cu2_p cu2_p --> cu2_c cu_c + h_e --> cu_e + h_c cu_e <=> cu_p cyan_c + tsul_c --> h_c + so3_c + tcynt_c cyan_p + tsul_p --> h_p + so3_p + tcynt_p cyan_e <=> cyan_p cynt_c + 3.0 h_c + hco3_c --> 2.0 co2_c + nh4_c cynt_p + h_p --> cynt_c + h_c cynt_e <=> cynt_p cys__D_c + h2o_c --> h2s_c + nh4_c + pyr_c cys__L_c + h2o_c --> h2s_c + nh4_c + pyr_c atp_c + cys__D_p + h2o_c --> adp_c + cys__D_c + h_c + pi_c cys__D_e <=> cys__D_p acser_c + h2s_c --> ac_c + cys__L_c + h_c 3sala_c + 2.0 h_c --> ala__L_c + so2_c cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c atp_c + cys__L_c + trnacys_c --> amp_c + cystrna_c + ppi_c atp_c + cys__L_c + h2o_c --> adp_c + cys__L_p + h_c + pi_c atp_c + cys__L_p + h2o_c --> adp_c + cys__L_c + h_c + pi_c cys__L_e <=> cys__L_p cys__L_c --> cys__L_p 2.0 h_c + mql8_c + 0.5 o2_c --> h2o_c + 2.0 h_p + mqn8_c 2.0 h_c + 0.5 o2_c + q8h2_c --> h2o_c + 2.0 h_p + q8_c 4.0 h_c + 0.5 o2_c + q8h2_c --> h2o_c + 4.0 h_p + q8_c cytd_c + h2o_c + h_c --> nh4_c + uri_c cytd_c + h2o_c --> csn_c + rib__D_c cytd_c + gtp_c --> cmp_c + gdp_c + h_c cytd_p + h_p --> cytd_c + h_c cytd_p + h_p <=> cytd_c + h_c cytd_e <=> cytd_p atp_c + cmp_c <=> adp_c + cdp_c atp_c + dcmp_c <=> adp_c + dcdp_c h_p + lac__D_p <=> h_c + lac__D_c lac__D_e <=> lac__D_p ala__D_c + fad_c + h2o_c --> fadh2_c + nh4_c + pyr_c dad_2_c + h2o_c + h_c --> din_c + nh4_c atp_c + damp_c <=> adp_c + dadp_c dad_2_p + h_p --> dad_2_c + h_c dad_2_e <=> dad_2_p 12dgr120_c + atp_c --> adp_c + h_c + pa120_c 12dgr140_c + atp_c --> adp_c + h_c + pa140_c 12dgr141_c + atp_c --> adp_c + h_c + pa141_c 12dgr160_c + atp_c --> adp_c + h_c + pa160_c 12dgr161_c + atp_c --> adp_c + h_c + pa161_c 12dgr180_c + atp_c --> adp_c + h_c + pa180_c 12dgr181_c + atp_c --> adp_c + h_c + pa181_c ala__D_p + h_p --> ala__D_c + h_c ala__D_e <=> ala__D_p damp_e <=> damp_p 23dappa_c + h2o_c --> 2.0 nh4_c + pyr_c 26dap__M_c + h_c --> co2_c + lys__L_c 26dap_LL_c <=> 26dap__M_c 26dap__M_p + atp_c + h2o_c --> 26dap__M_c + adp_c + h_c + pi_c 15dap_e <=> 15dap_p ctp_c + h_c + pa120_c --> cdpdddecg_c + ppi_c ctp_c + h_c + pa140_c --> cdpdtdecg_c + ppi_c ctp_c + h_c + pa141_c --> cdpdtdec7eg_c + ppi_c ctp_c + h_c + pa160_c --> cdpdhdecg_c + ppi_c ctp_c + h_c + pa161_c --> cdpdhdec9eg_c + ppi_c ctp_c + h_c + pa180_c --> cdpdodecg_c + ppi_c ctp_c + h_c + pa181_c --> cdpdodec11eg_c + ppi_c datp_c + h2o_c + h_c --> ditp_c + nh4_c ru5p__D_c --> db4p_c + for_c + h_c atp_c + co2_c + dann_c --> adp_c + dtbt_c + 3.0 h_c + pi_c chtbs6p_c + h2o_c --> acgam6p_c + acgam_c dca_e <=> dca_p dcmp_e <=> dcmp_p dctp_c + h2o_c + h_c --> dutp_c + nh4_c dcyt_c + h2o_c + h_c --> duri_c + nh4_c dcyt_p + h_p --> dcyt_c + h_c dcyt_e <=> dcyt_p ddca_e --> ddca_p 2dh3dgal_c + atp_c --> 2dh3dgal6p_c + adp_c + h_c 2ddglcn_p + h_p <=> 2ddglcn_c + h_c 2ddglcn_e <=> 2ddglcn_p 2ddglcn_c + atp_c --> 2ddg6p_c + adp_c + h_c e4p_c + h2o_c + pep_c --> 2dda7p_c + pi_c 2dh3dgal6p_c <=> g3p_c + pyr_c atp_c + dgmp_c <=> adp_c + dgdp_c dgmp_e <=> dgmp_p dgsn_p + h_p --> dgsn_c + h_c dgsn_e <=> dgsn_p 23dhacoa_c + h2o_c <=> 3hadpcoa_c 23dhmb_c --> 3mob_c + h2o_c 23dhmp_c --> 3mop_c + h2o_c dha_c + pep_c --> dhap_c + pyr_c dha_e <=> dha_p dha_p <=> dha_c 23ddhb_c + nad_c <=> 23dhb_c + h_c + nadh_c 23dhb_c + atp_c + h_c --> 23dhba_c + ppi_c 23dhbzs_c + h2o_c --> 23dhb_c + ser__L_c cenchddd_c + nad_c --> dhcinnm_c + h_c + nadh_c dhcinnm_c + o2_c --> h_c + hkntd_c 23dhdp_c + h_c + nadph_c --> nadp_c + thdp_c aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c dhf_c + h_c + nadph_c <=> nadp_c + thf_c atp_c + dhpt_c + glu__L_c --> adp_c + dhf_c + h_c + pi_c dhmpt_c + h_c + nadph_c --> nadp_c + thmnp_c dhna_c + h_c + octdp_c --> 2dmmql8_c + co2_c + ppi_c h_c + sbzcoa_c --> 14dhncoa_c + h2o_c 14dhncoa_c + h2o_c --> coa_c + dhna_c + h_c dhnpt_c <=> 6hmhpt_c + gcald_c dhnpt_c <=> dhmpt_c dhor__S_c + q8_c --> orot_c + q8h2_c dhor__S_c + mqn8_c --> mql8_c + orot_c dhor__S_c + fum_c --> orot_c + succ_c dhor__S_c + h2o_c <=> cbasp_c + h_c cechddd_c + nad_c --> dhpppn_c + h_c + nadh_c 25drapp_c + h2o_c + h_c --> 5apru_c + nh4_c 4abz_c + 6hmhptpp_c --> dhpt_c + ppi_c dhptd_c --> mdhdhf_c dhptdn_c + 3.0 h_c + nadph_c --> nadp_c + thptdn_c dhptdn_c + 3.0 h_c + nadh_c --> nad_c + thptdn_c ahdt_c <=> dhmptp_c 2dda7p_c --> 3dhq_c + pi_c 3dhq_c --> 3dhsk_c + h2o_c dimp_e <=> dimp_p din_p + h_p --> din_c + h_c din_e <=> din_p 25dkglcn_c + h_c + nadph_c --> 2dhguln_c + nadp_c 25dkglcn_c + h_c + nadh_c --> 5dglcn_c + nad_c 25dkglcn_c + h_c + nadph_c --> 5dglcn_c + nadp_c dmpp_c + ipdp_c --> grdp_c + ppi_c h2mb4p_c + h_c + nadh_c --> dmpp_c + h2o_c + nad_c 2omhmbl_c + amet_c --> ahcys_c + h_c + q8h2_c dmso_c + mql8_c --> dms_c + h2o_c + mqn8_c dmso_p + mql8_c --> dms_p + h2o_p + mqn8_c 2dmmql8_c + dmso_c --> 2dmmq8_c + dms_c + h2o_c 2dmmql8_c + dmso_p --> 2dmmq8_c + dms_p + h2o_p dmso_e <=> dmso_p dmso_p <=> dmso_c dms_e <=> dms_p dhpmp_c + h2o_c --> dhnpt_c + pi_c ahdt_c + h2o_c --> dhpmp_c + h_c + ppi_c 23doguln_c + h_c + nadh_c --> 3dhguln_c + nad_c dopa_e <=> dopa_p doxrbcn_e <=> doxrbcn_p doxrbcn_p + h_p --> doxrbcn_e + h_c atp_c + dpcoa_c --> adp_c + coa_c + h_c 2dhp_c + h_c + nadph_c --> nadp_c + pant__R_c 2dr5p_c --> acald_c + g3p_c dsbard_p + q8_c --> dsbaox_p + q8h2_c dsbard_p + mqn8_c --> dsbaox_p + mql8_c dsbcox_p + 2.0 gthrd_p --> dsbcrd_p + gthox_p dsbdox_c + trdrd_c --> dsbdrd_c + trdox_c dsbgox_p + 2.0 gthrd_p --> dsbgrd_p + gthox_p nadp_c + ser__D_c <=> 2amsa_c + h_c + nadph_c h_p + ser__D_p --> h_c + ser__D_c ser__D_e <=> ser__D_p tartr__D_c --> h2o_c + oaa_c atp_c + dtmp_c <=> adp_c + dtdp_c dtmp_e <=> dtmp_p dump_e <=> dump_p 56dura_c + nad_c <=> h_c + nadh_c + ura_c atp_c + duri_c --> adp_c + dump_c + h_c duri_c + pi_c <=> 2dr1p_c + ura_c duri_p + h_p --> duri_c + h_c duri_e <=> duri_p dutp_c + h2o_c --> dump_c + h_c + ppi_c dxyl5p_c + h_c + nadph_c --> 2me4p_c + nadp_c g3p_c + h_c + pyr_c --> co2_c + dxyl5p_c atp_c + dxyl_c --> adp_c + dxyl5p_c + h_c e4p_c + h2o_c + nad_c <=> 4per_c + 2.0 h_c + nadh_c h_c + nadh_c + tdec2eACP_c --> dcaACP_c + nad_c h_c + nadph_c + tdec2eACP_c --> dcaACP_c + nadp_c h_c + nadh_c + tddec2eACP_c --> ddcaACP_c + nad_c h_c + nadph_c + tddec2eACP_c --> ddcaACP_c + nadp_c h_c + nadh_c + t3c5ddeceACP_c --> cddec5eACP_c + nad_c h_c + nadph_c + t3c5ddeceACP_c --> cddec5eACP_c + nadp_c h_c + nadh_c + tmrs2eACP_c --> myrsACP_c + nad_c h_c + nadph_c + tmrs2eACP_c --> myrsACP_c + nadp_c h_c + nadh_c + t3c7mrseACP_c --> nad_c + tdeACP_c h_c + nadph_c + t3c7mrseACP_c --> nadp_c + tdeACP_c h_c + nadh_c + tpalm2eACP_c --> nad_c + palmACP_c h_c + nadph_c + tpalm2eACP_c --> nadp_c + palmACP_c h_c + nadh_c + t3c9palmeACP_c --> hdeACP_c + nad_c h_c + nadph_c + t3c9palmeACP_c --> hdeACP_c + nadp_c h_c + nadh_c + toctd2eACP_c --> nad_c + ocdcaACP_c h_c + nadph_c + toctd2eACP_c --> nadp_c + ocdcaACP_c h_c + nadh_c + t3c11vaceACP_c --> nad_c + octeACP_c h_c + nadph_c + t3c11vaceACP_c --> nadp_c + octeACP_c but2eACP_c + h_c + nadh_c --> butACP_c + nad_c but2eACP_c + h_c + nadph_c --> butACP_c + nadp_c h_c + nadh_c + thex2eACP_c --> hexACP_c + nad_c h_c + nadph_c + thex2eACP_c --> hexACP_c + nadp_c h_c + nadh_c + toct2eACP_c --> nad_c + ocACP_c h_c + nadph_c + toct2eACP_c --> nadp_c + ocACP_c atp_c + eca4colipa_p + h2o_c --> adp_c + eca4colipa_e + h_c + pi_c colipa_p + eca4und_p --> eca4colipa_p + h_p + udcpdp_p 2.0 unagamuf_p --> eca2und_p + h_p + udcpdp_p eca2und_p + unagamuf_p --> eca3und_p + h_p + udcpdp_p eca3und_p + unagamuf_p --> eca4und_p + h_p + udcpdp_p unagamuf_c --> unagamuf_p 3hbcoa_c <=> b2coa_c + h2o_c 3hhcoa_c <=> h2o_c + hx2coa_c 3hocoa_c <=> h2o_c + oc2coa_c 3hdcoa_c <=> dc2coa_c + h2o_c 3hddcoa_c <=> dd2coa_c + h2o_c 3htdcoa_c <=> h2o_c + td2coa_c 3hhdcoa_c <=> h2o_c + hdd2coa_c 3hodcoa_c <=> h2o_c + od2coa_c 2ddg6p_c --> g3p_c + pyr_c 6pgc_c --> 2ddg6p_c + h2o_c ddcaACP_c + kdo2lipid4_c --> ACP_c + kdo2lipid4L_c kdo2lipid4L_c + myrsACP_c --> ACP_c + lipa_c hdeACP_c + kdo2lipid4_c --> ACP_c + kdo2lipid4p_c kdo2lipid4p_c + myrsACP_c --> ACP_c + lipa_cold_c egmeACP_c + h_c + nadph_c --> gmeACP_c + nadp_c atp_c + enlipa_p + h2o_c --> adp_c + enlipa_e + h_c + pi_c 2pg_c <=> h2o_c + pep_c 3.0 23dhba_c + 3.0 seramp_c --> 6.0 amp_c + enter_c + 9.0 h_c enter_c + 3.0 h2o_c --> 3.0 23dhbzs_c + 3.0 h_c feenter_c + 3.0 h2o_c --> 3.0 23dhbzs_c + fe3_c + 3.0 h_c epmeACP_c + h_c + nadph_c --> nadp_c + pmeACP_c etha_c --> acald_c + nh4_c etha_p + h_p --> etha_c + h_c etha_e <=> etha_p atp_c + ethso3_p + h2o_c --> adp_c + ethso3_c + h_c + pi_c ethso3_e <=> ethso3_p etoh_e <=> etoh_p etoh_p <=> etoh_c f6p_c <=> dha_c + g3p_c f6p_c + h2o_c --> fru_c + pi_c f6p_p + 2.0 pi_c --> f6p_c + 2.0 pi_p f6p_e <=> f6p_p dcaACP_c + h2o_c --> ACP_c + dca_c + h_c ddcaACP_c + h2o_c --> ACP_c + ddca_c + h_c h2o_c + myrsACP_c --> ACP_c + h_c + ttdca_c h2o_c + tdeACP_c --> ACP_c + h_c + ttdcea_c h2o_c + palmACP_c --> ACP_c + h_c + hdca_c h2o_c + hdeACP_c --> ACP_c + h_c + hdcea_c h2o_c + ocACP_c --> ACP_c + h_c + octa_c dcacoa_c + h2o_c --> coa_c + dca_c + h_c ddcacoa_c + h2o_c --> coa_c + ddca_c + h_c h2o_c + tdcoa_c --> coa_c + h_c + ttdca_c h2o_c + tdecoa_c --> coa_c + h_c + ttdcea_c h2o_c + pmtcoa_c --> coa_c + h_c + hdca_c h2o_c + hdcoa_c --> coa_c + h_c + hdcea_c h2o_c + stcoa_c --> coa_c + h_c + ocdca_c h2o_c + odecoa_c --> coa_c + h_c + ocdcea_c h2o_c + hxcoa_c --> coa_c + h_c + hxa_c h2o_c + occoa_c --> coa_c + h_c + octa_c atp_c + coa_c + dca_p + h_p --> amp_c + dcacoa_c + h_c + ppi_c atp_c + coa_c + ddca_p + h_p --> amp_c + ddcacoa_c + h_c + ppi_c atp_c + coa_c + h_p + ttdca_p --> amp_c + h_c + ppi_c + tdcoa_c atp_c + coa_c + h_p + ttdcea_p --> amp_c + h_c + ppi_c + tdecoa_c atp_c + coa_c + h_p + hdca_p --> amp_c + h_c + pmtcoa_c + ppi_c atp_c + coa_c + h_p + hdcea_p --> amp_c + h_c + hdcoa_c + ppi_c atp_c + coa_c + h_p + ocdca_p --> amp_c + h_c + ppi_c + stcoa_c atp_c + coa_c + h_p + ocdcea_p --> amp_c + h_c + odecoa_c + ppi_c atp_c + coa_c + h_p + hxa_p --> amp_c + h_c + hxcoa_c + ppi_c atp_c + coa_c + h_p + octa_p --> amp_c + h_c + occoa_c + ppi_c fad_c + h_c + nadh_c --> fadh2_c + nad_c fad_c + h_c + nadph_c --> fadh2_c + nadp_c hmgth_c + nad_c <=> Sfglutth_c + h_c + nadh_c fald_e <=> fald_p fald_p <=> fald_c fald_c + gthrd_c <=> hmgth_c fdp_c <=> dhap_c + g3p_c s17bp_c <=> dhap_c + e4p_c fdp_c + h2o_c --> f6p_c + pi_c fuc__L_c <=> fcl__L_c atp_c + fcl__L_c --> adp_c + fc1p_c + h_c fc1p_c <=> dhap_c + lald__L_c fe2_c + ppp9_c --> 2.0 h_c + pheme_c for_p + 2.0 h_c + q8_c --> co2_p + h_p + q8h2_c for_p + 2.0 h_c + mqn8_c --> co2_p + h_p + mql8_c fmnh2_c + isetac_c + o2_c --> fmn_c + gcald_c + h2o_c + h_c + so3_c fmnh2_c + mso3_c + o2_c --> fald_c + fmn_c + h2o_c + h_c + so3_c ethso3_c + fmnh2_c + o2_c --> acald_c + fmn_c + h2o_c + h_c + so3_c butso3_c + fmnh2_c + o2_c --> btal_c + fmn_c + h2o_c + h_c + so3_c fmnh2_c + o2_c + sulfac_c --> fmn_c + glx_c + h2o_c + h_c + so3_c atp_c + fe2_p + h2o_c --> adp_c + fe2_c + h_c + pi_c fe2_p + h_p --> fe2_c + h_c fe2_c + h_p --> fe2_p + h_c fe2_e <=> fe2_p fe2_p --> fe2_c atp_c + fe3dcit_p + h2o_c --> adp_c + 2.0 cit_c + fe3_c + h_c + pi_c fe3dcit_e + h_p --> fe3dcit_p + h_c fe3dhbzs_c --> 23dhbzs_c + fe3_c atp_c + fe3dhbzs_p + h2o_c --> adp_c + fe3dhbzs_c + h_c + pi_c fe3dhbzs_e + h_p --> fe3dhbzs_p + h_c fadh2_c + 2.0 fe3hox_c --> fad_c + 2.0 fe2_c + 2.0 fe3hox_un_c + 2.0 h_c 2.0 fe3hox_c + fmnh2_c --> 2.0 fe2_c + 2.0 fe3hox_un_c + fmn_c + 2.0 h_c 2.0 fe3hox_c + rbflvrd_c --> 2.0 fe2_c + 2.0 fe3hox_un_c + 2.0 h_c + ribflv_c fe3hox_un_c + h_p --> fe3hox_un_p + h_c fe3hox_un_p + h_p --> fe3hox_un_e + h_c atp_c + fe3hox_p + h2o_c --> adp_c + fe3hox_c + h_c + pi_c fe3_e + fe3hox_un_e --> fe3hox_e fe3hox_e + h_p --> fe3hox_p + h_c fadh2_c + 2.0 fe3_c --> fad_c + 2.0 fe2_c + 2.0 h_c atp_c + fe3_p + h2o_c --> adp_c + fe3_c + h_c + pi_c fe3_e <=> fe3_p fadh2_c + 2.0 fecrm_c --> fad_c + 2.0 fe2_c + 2.0 fecrm_un_c + 2.0 h_c 2.0 fecrm_c + fmnh2_c --> 2.0 fe2_c + 2.0 fecrm_un_c + fmn_c + 2.0 h_c 2.0 fecrm_c + rbflvrd_c --> 2.0 fe2_c + 2.0 fecrm_un_c + 2.0 h_c + ribflv_c fecrm_un_p + h_p --> fecrm_un_e + h_c fecrm_un_c + h_p --> fecrm_un_p + h_c atp_c + fecrm_p + h2o_c --> adp_c + fecrm_c + h_c + pi_c fe3_e + fecrm_un_e --> fecrm_e fecrm_e + h_p --> fecrm_p + h_c fadh2_c + 2.0 feenter_c --> 2.0 enter_c + fad_c + 2.0 fe2_c + 2.0 h_c 2.0 feenter_c + fmnh2_c --> 2.0 enter_c + 2.0 fe2_c + fmn_c + 2.0 h_c 2.0 feenter_c + rbflvrd_c --> 2.0 enter_c + 2.0 fe2_c + 2.0 h_c + ribflv_c atp_c + feenter_p + h2o_c --> adp_c + feenter_c + h_c + pi_c enter_e + fe3_e --> feenter_e enter_p + h_p --> enter_e + h_c feenter_e + h_p --> feenter_p + h_c enter_c + h_p --> enter_p + h_c fadh2_c + 2.0 feoxam_c --> fad_c + 2.0 fe2_c + 2.0 feoxam_un_c + 2.0 h_c 2.0 feoxam_c + fmnh2_c --> 2.0 fe2_c + 2.0 feoxam_un_c + fmn_c + 2.0 h_c 2.0 feoxam_c + rbflvrd_c --> 2.0 fe2_c + 2.0 feoxam_un_c + 2.0 h_c + ribflv_c feoxam_un_p + h_p --> feoxam_un_e + h_c feoxam_un_c + h_p --> feoxam_un_p + h_c atp_c + feoxam_p + h2o_c --> adp_c + feoxam_c + h_c + pi_c fe3_e + feoxam_un_e --> feoxam_e feoxam_e + h_p --> feoxam_p + h_c 4.0 fe2_p + 4.0 h_p + o2_p --> 4.0 fe3_p + 2.0 h2o_p 2.0 4fe4s_c + h2o2_c + 2.0 h_c --> 2.0 3fe4s_c + 2.0 fe3_c + 2.0 h2o_c 2.0 4fe4s_c + 2.0 h_c + 2.0 no_c --> 2.0 3fe4s_c + 2.0 fe3_c + h2o_c + n2o_c 3fe4s_c + fe2_c --> 4fe4s_c h2o_c + suc6p_c --> fru_c + g6p_c for_c + h_c --> co2_c + h2_c 2.0 flxso_c + nadph_c --> 2.0 flxr_c + h_c + nadp_c h_c + nadph_c + ribflv_c --> nadp_c + rbflvrd_c h_c + nadh_c + ribflv_c --> nad_c + rbflvrd_c 10fthf_c + mettrna_c --> fmettrna_c + h_c + thf_c atp_c + fmn_c + h_c --> fad_c + ppi_c fmn_c + h_c + nadh_c --> fmnh2_c + nad_c fmn_c + h_c + nadph_c --> fmnh2_c + nadp_c 5fthf_c + h_c --> h2o_c + methf_c forcoa_c + oxa_c <=> for_c + oxalcoa_c for_p + h_p --> for_c + h_c for_e <=> for_p for_c --> for_p fum_c + mql8_c --> mqn8_c + succ_c 2dmmql8_c + fum_c --> 2dmmq8_c + succ_c atp_c + f1p_c --> adp_c + fdp_c + h_c frulysp_c + h2o_c <=> g6p_c + lys__L_c psclys_c <=> frulys_c atp_c + frulys_c --> adp_c + frulysp_c + h_c frulys_p + h_p --> frulys_c + h_c frulys_e <=> frulys_p fruur_p + h_p <=> fruur_c + h_c fruur_e <=> fruur_p fru_p + pep_c --> f6p_c + pyr_c fru_p + pep_c --> f1p_c + pyr_c fru_e <=> fru_p 10fthf_c + h2o_c --> for_c + h_c + thf_c atp_c + for_c + thf_c --> 10fthf_c + adp_c + pi_c fuc__L_e <=> fuc__L_p fuc__L_p + h_p <=> fuc__L_c + h_c fum_c + h2o_c <=> mal__L_c fum_p + 2.0 h_p --> fum_c + 2.0 h_c fum_p + 3.0 h_p --> fum_c + 3.0 h_c fum_e <=> fum_p fusa_e <=> fusa_p fusa_p + h_p --> fusa_e + h_c accoa_c + gam1p_c --> acgam1p_c + coa_c + h_c g1p_p + h2o_p --> glc__D_p + pi_p dttp_c + g1p_c + h_c --> dtdpglu_c + ppi_c g1p_e <=> g1p_p glu1sa_c <=> 5aop_c glyc2p_c + h2o_c --> glyc_c + pi_c glyc2p_p + h2o_p --> glyc_p + pi_p ddcaACP_c + glyc3p_c --> 1ddecg3p_c + ACP_c glyc3p_c + myrsACP_c --> 1tdecg3p_c + ACP_c glyc3p_c + tdeACP_c --> 1tdec7eg3p_c + ACP_c glyc3p_c + palmACP_c --> 1hdecg3p_c + ACP_c glyc3p_c + hdeACP_c --> 1hdec9eg3p_c + ACP_c glyc3p_c + ocdcaACP_c --> 1odecg3p_c + ACP_c glyc3p_c + octeACP_c --> 1odec11eg3p_c + ACP_c atp_c + g3pc_p + h2o_c --> adp_c + g3pc_c + h_c + pi_c g3pc_e <=> g3pc_p glyc3p_c + nadp_c <=> dhap_c + h_c + nadph_c glyc3p_c + q8_c --> dhap_c + q8h2_c glyc3p_c + mqn8_c --> dhap_c + mql8_c 2dmmq8_c + glyc3p_c --> 2dmmql8_c + dhap_c atp_c + g3pe_p + h2o_c --> adp_c + g3pe_c + h_c + pi_c g3pe_e <=> g3pe_p atp_c + g3pg_p + h2o_c --> adp_c + g3pg_c + h_c + pi_c g3pg_e <=> g3pg_p atp_c + g3pi_p + h2o_c --> adp_c + g3pi_c + h_c + pi_c g3pi_e <=> g3pi_p atp_c + g3ps_p + h2o_c --> adp_c + g3ps_c + h_c + pi_c g3ps_e <=> g3ps_p glyc3p_c + h2o_c --> glyc_c + pi_c glu5sa_c --> 1pyr5c_c + h2o_c + h_c glu5p_c + h_c + nadph_c --> glu5sa_c + nadp_c + pi_c gam6p_c + h2o_c --> f6p_c + nh4_c g6p_c + nadp_c <=> 6pgl_c + h_c + nadph_c g6p_c + h2o_c --> glc__D_c + pi_c g6p_p + 2.0 pi_c --> g6p_c + 2.0 pi_p g6p_e <=> g6p_p gal1p_p + h2o_p --> gal_p + pi_p gal1p_e <=> gal1p_p gal_bD_e <=> gal_bD_p galct__D_c --> 5dh4dglc_c + h2o_c galctn__L_c + nad_c --> h_c + nadh_c + tagur_c galctn__D_c --> 2dh3dgal_c + h2o_c galctn__L_p + h_p --> galctn__L_c + h_c galctn__L_e <=> galctn__L_p galctn__D_p + h_p --> galctn__D_c + h_c galctn__D_e <=> galctn__D_p galct__D_p + h_p <=> galct__D_c + h_c galct__D_e <=> galct__D_p atp_c + gal_c <=> adp_c + gal1p_c + h_c gal_bD_p --> gal_p h2o_c + melib_c --> gal_c + glc__D_c gicolipa_c + udpg_c --> gagicolipa_c + h_c + udp_c galt_p + pep_c --> galt1p_c + pyr_c galt_e <=> galt_p galur_p + h_p <=> galur_c + h_c galur_e <=> galur_p g1p_c + h_c + utp_c --> ppi_c + udpg_c atp_c + gal_p + h2o_c --> adp_c + gal_c + h_c + pi_c gal_p + h_p --> gal_c + h_c gal_e <=> gal_p gam6p_p + 2.0 pi_c --> gam6p_c + 2.0 pi_p gam6p_e <=> gam6p_p gam_p + pep_c --> gam6p_c + pyr_c gam_e <=> gam_p g3p_c + nad_c + pi_c <=> 13dpg_c + h_c + nadh_c 10fthf_c + gar_c <=> fgam_c + h_c + thf_c atp_c + for_c + gar_c --> adp_c + fgam_c + h_c + pi_c gbbtn_e <=> gbbtn_p gcald_c + h2o_c + nad_c --> glyclt_c + 2.0 h_c + nadh_c gdpddman_c --> gdpofuc_c atp_c + gdp_c --> amp_c + h_c + ppgpp_c gdpmann_c + h2o_c --> gdp_c + h_c + man_c gdpmann_c + h2o_c --> gmp_c + 2.0 h_c + man1p_c gdptp_c + h2o_c --> gtp_c + ppi_c gdp_e <=> gdp_p f6p_c + gln__L_c --> gam6p_c + glu__L_c ggbutal_c + h2o_c + nadp_c <=> gg4abut_c + 2.0 h_c + nadph_c gg4abut_c + h2o_c --> 4abut_c + glu__L_c ggptrc_c + h2o_c + o2_c --> ggbutal_c + h2o2_c + nh4_c atp_c + glu__L_c + ptrc_c --> adp_c + ggptrc_c + h_c + pi_c h_c + nadh_c + sucsal_c <=> ghb_c + nad_c ser__L_c + thf_c <=> gly_c + h2o_c + mlthf_c atp_c + gmp_c <=> adp_c + gdp_c glycogen_c --> bglycogen_c accoa_c + glc__D_c <=> acglc__D_c + coa_c glc__D_p + h2o_p + q8_c --> glcn_p + h_p + q8h2_c glcn_p + h_p <=> glcn_c + h_c glcn_e <=> glcn_p glycogen_c + pi_c --> g1p_c bglycogen_c + pi_c --> g1p_c 5dh4dglc_c --> 2h3oppan_c + pyr_c glcr_c --> 5dh4dglc_c + h2o_c glcr_p + h_p <=> glcr_c + h_c glcr_e <=> glcr_p adpglc_c --> adp_c + glycogen_c + h_c icolipa_c + udpg_c --> gicolipa_c + h_c + udp_c gagicolipa_c + udpg_c --> ggagicolipa_c + h_c + udp_c ggagicolipa_c + udpg_c --> gggagicolipa_c + h_c + udp_c glcur1p_e <=> glcur1p_p glcur_p + h_p <=> glcur_c + h_c glcur_e <=> glcur_p atp_c + glc__D_p + h2o_c --> adp_c + glc__D_c + h_c + pi_c glc__D_p + pep_c --> g6p_c + pyr_c glc__D_p + h_p --> glc__D_c + h_c glc__D_e <=> glc__D_p glc__D_e --> glc__D_p bglycogen_c --> glycogen_c atp_c + g1p_c + h_c --> adpglc_c + ppi_c atp_c + glu__L_c + nh4_c --> adp_c + gln__L_c + h_c + pi_c atp_c + gln__L_c + trnagln_c --> amp_c + glntrna_c + ppi_c atp_c + gln__L_p + h2o_c --> adp_c + gln__L_c + h_c + pi_c gln__L_e <=> gln__L_p galt1p_c + nad_c <=> h_c + nadh_c + tag6p__D_c atp_c + glu__L_c --> adp_c + glu5p_c 4abut_c + glu__L_p <=> 4abut_p + glu__L_c atp_c + cys__L_c + glu__L_c --> adp_c + glucys_c + h_c + pi_c glu__L_c + h_c --> 4abut_c + co2_c glu__L_c + h2o_c + nadp_c <=> akg_c + h_c + nadph_c + nh4_c gln__L_c + h2o_c --> glu__L_c + nh4_c gln__L_p + h2o_p --> glu__L_p + nh4_p gln__L_c + h2o_c + prpp_c --> glu__L_c + ppi_c + pram_c glu__D_c <=> glu__L_c akg_c + gln__L_c + h_c + nadph_c --> 2.0 glu__L_c + nadp_c glutrna_c + h_c + nadph_c --> glu1sa_c + nadp_c + trnaglu_c atp_c + glu__L_c + trnaglu_c --> amp_c + glutrna_c + ppi_c atp_c + glu__L_p + h2o_c --> adp_c + glu__L_c + h_c + pi_c glu__L_p + h_p <=> glu__L_c + h_c glu__L_p + na1_p --> glu__L_c + na1_c glu__L_e <=> glu__L_p 2.0 glx_c + h_c --> 2h3oppan_c + co2_c glyald_e <=> glyald_p glyald_p <=> glyald_c accoa_c + gly_c <=> 2aobut_c + coa_c atp_c + glyb_p + h2o_c --> adp_c + glyb_c + h_c + pi_c glyb_p + h_p --> glyb_c + h_c glyb_e <=> glyb_p atp_c + glyc2p_p + h2o_c --> adp_c + glyc2p_c + h_c + pi_c glyc2p_e <=> glyc2p_p atp_c + glyc3p_p + h2o_c --> adp_c + glyc3p_c + h_c + pi_c glyc3p_p + pi_c --> glyc3p_c + pi_p glyc3p_e <=> glyc3p_p glyc__R_p + h_p <=> glyc__R_c + h_c glyc__R_e <=> glyc__R_p glyc_c + nad_c --> dha_c + h_c + nadh_c atp_c + glyc__R_c --> 3pg_c + adp_c + h_c atp_c + glyc__R_c --> 2pg_c + adp_c + h_c gly_c + nad_c + thf_c --> co2_c + mlthf_c + nadh_c + nh4_c glx_c + h_c + nadh_c --> glyclt_c + nad_c glx_c + h_c + nadph_c --> glyclt_c + nadp_c glyclt_p + h_p <=> glyclt_c + h_c glyclt_p + na1_p --> glyclt_c + na1_c glyclt_e <=> glyclt_p glyclt_c + q8_c --> glx_c + q8h2_c glyclt_c + mqn8_c --> glx_c + mql8_c 2dmmq8_c + glyclt_c --> 2dmmql8_c + glx_c glyc_e <=> glyc_p glyc_c <=> glyc_p atp_c + glyc_c --> adp_c + glyc3p_c + h_c h2o_c + lgt__S_c --> gthrd_c + h_c + lac__D_c h2o_c + mthgxl_c --> h_c + lac__D_c atp_c + gly_c + trnagly_c --> amp_c + glytrna_c + ppi_c gly_p + h_p --> gly_c + h_c gly_p + h_p <=> gly_c + h_c gly_p + na1_p --> gly_c + na1_c gly_e <=> gly_p gdpmann_c --> gdpddman_c + h2o_c atp_c + gmhep1p_c + h_c --> adphep_DD_c + ppi_c atp_c + gmhep7p_c --> adp_c + gmhep17bp_c + h_c gmhep17bp_c + h2o_c --> gmhep1p_c + pi_c gmp_c + 2.0 h_c + nadph_c --> imp_c + nadp_c + nh4_c atp_c + gln__L_c + h2o_c + xmp_c --> amp_c + glu__L_c + gmp_c + 2.0 h_c + ppi_c gmp_e <=> gmp_p 6pgc_c + nadp_c --> co2_c + nadph_c + ru5p__D_c atp_c + glcn_c --> 6pgc_c + adp_c + h_c gdpofuc_c + h_c + nadph_c --> gdpfuc_c + nadp_c gp4g_c + h2o_c --> 2.0 gdp_c + 2.0 h_c g3pc_c + h2o_c --> chol_c + glyc3p_c + h_c g3pc_p + h2o_p --> chol_p + glyc3p_p + h_p g3pe_c + h2o_c --> etha_c + glyc3p_c + h_c g3pe_p + h2o_p --> etha_p + glyc3p_p + h_p g3ps_c + h2o_c --> glyc3p_c + h_c + ser__L_c g3ps_p + h2o_p --> glyc3p_p + h_p + ser__L_p g3pg_c + h2o_c --> glyc3p_c + glyc_c + h_c g3pg_p + h2o_p --> glyc3p_p + glyc_p + h_p g3pi_c + h2o_c --> glyc3p_c + h_c + inost_c g3pi_p + h2o_p --> glyc3p_p + h_p + inost_p grdp_c + ipdp_c --> frdp_c + ppi_c grxox_c + 2.0 gthrd_c --> grxrd_c + gthox_c atp_c + gsn_c --> adp_c + gmp_c + h_c gsn_p + h_p --> gsn_c + h_c gsn_e <=> gsn_p gtspmd_c + h2o_c --> gthrd_c + spmd_c atp_c + gthrd_c + spmd_c --> adp_c + gtspmd_c + h_c + pi_c gthox_e <=> gthox_p gthox_c + h_c + nadph_c <=> 2.0 gthrd_c + nadp_c 2.0 gthrd_c + h2o2_c --> gthox_c + 2.0 h2o_c gthrd_p + h2o_p --> cgly_p + glu__L_p atp_c + gthrd_c + h2o_c --> adp_c + gthrd_p + h_c + pi_c atp_c + gthrd_p + h2o_c --> adp_c + gthrd_c + h_c + pi_c gthrd_e <=> gthrd_p atp_c + glucys_c + gly_c --> adp_c + gthrd_c + h_c + pi_c gtp_c + h2o_c --> ahdt_c + for_c + h_c gtp_c + 3.0 h2o_c --> 25drapp_c + for_c + 2.0 h_c + ppi_c gdptp_c + h2o_c --> h_c + pi_c + ppgpp_c atp_c + gtp_c --> amp_c + gdptp_c + h_c gtp_c + h2o_c + h_c --> nh4_c + xtp_c gtp_e <=> gtp_p gtp_c --> 35cgmp_c + ppi_c gua_c + h2o_c + h_c --> nh4_c + xan_c gua_c + prpp_c --> gmp_c + ppi_c gua_p + h_p --> gua_c + h_c gua_e <=> gua_p gua_p <=> gua_c glcur_c <=> fruur_c galur_c <=> tagur_c glcur1p_p + h2o_p --> glcur_p + pi_p h2o2_e <=> h2o2_p h2o_e <=> h2o_p h2o_p <=> h2o_c h2s_c + 2.0 o2_c --> 2.0 h_c + so4_c h2s_c --> h2s_p h2s_e <=> h2s_p h2_e <=> h2_p h2_p <=> h2_c aacoa_c + h_c + nadh_c <=> 3hbcoa_c + nad_c 3ohcoa_c + h_c + nadh_c <=> 3hhcoa_c + nad_c 3oocoa_c + h_c + nadh_c <=> 3hocoa_c + nad_c 3odcoa_c + h_c + nadh_c <=> 3hdcoa_c + nad_c 3oddcoa_c + h_c + nadh_c <=> 3hddcoa_c + nad_c 3otdcoa_c + h_c + nadh_c <=> 3htdcoa_c + nad_c 3ohdcoa_c + h_c + nadh_c <=> 3hhdcoa_c + nad_c 3ohodcoa_c + h_c + nadh_c <=> 3hodcoa_c + nad_c 3hadpcoa_c + nad_c <=> h_c + nadh_c + oxadpcoa_c 4hbz_c + octdp_c --> 3ophb_c + ppi_c 3hcinnm_p + h_p <=> 3hcinnm_c + h_c 3hcinnm_e <=> 3hcinnm_p co2_c + h2o_c <=> h_c + hco3_c amet_c + hcys__L_c --> ahcys_c + h_c + met__L_c hcys__L_c + mmet_c --> h_c + 2.0 met__L_c hdca_e --> hdca_p hdcea_e --> hdcea_p frdp_c + h2o_c + pheme_c --> hemeO_c + ppi_c atp_c + hhlipa_c --> adp_c + h_c + phhlipa_c atp_c + hphhlipa_c --> adp_c + h_c + phphhlipa_c adphep_LD_c + lipa_c --> adp_c + h_c + hlipa_c adphep_LD_c + hlipa_c --> adp_c + h_c + hhlipa_c adphep_LD_c + phhlipa_c --> adp_c + h_c + hphhlipa_c adphep_LD_c + gggagicolipa_c --> adp_c + colipa_c + h_c 4mhetz_c + atp_c --> 4mpetz_c + adp_c + h_c atp_c + glc__D_c --> adp_c + g6p_c + h_c atp_c + man_c --> adp_c + h_c + man6p_c atp_c + fru_c --> adp_c + f6p_c + h_c h_p + hxa_p <=> h_c + hxa_c atp_c + h2o_c + hg2_c --> adp_c + h_c + hg2_p + pi_c h_p + hg2_c --> h_c + hg2_p hg2_e <=> hg2_p h2o_c + histd_c + 2.0 nad_c --> 3.0 h_c + his__L_c + 2.0 nadh_c h2o_c + hisp_c --> histd_c + pi_c atp_c + his__L_c + trnahis_c --> amp_c + histrna_c + ppi_c atp_c + h2o_c + his__L_p --> adp_c + h_c + his__L_c + pi_c h_p + his__L_p <=> h_c + his__L_c his__L_e <=> his__L_p h2o_c + hkndd_c --> h_c + op4en_c + succ_c h2o_c + hkntd_c --> fum_c + h_c + op4en_c h2o_c + 4.0 ppbng_c --> hmbil_c + 4.0 nh4_c 4ahmmp_c + atp_c --> 4ampm_c + adp_c + h_c h_p + hom__L_c --> h_c + hom__L_p hom__L_e <=> hom__L_p 4h2opntn_c --> acald_c + pyr_c 6hmhpt_c + atp_c --> 6hmhptpp_c + amp_c + h_c dhpppn_c + o2_c --> h_c + hkndd_c 3hpppn_p + h_p <=> 3hpppn_c + h_c 3hpppn_e <=> 3hpppn_p hpyr_c <=> 2h3oppan_c h_c + hpyr_c + nadh_c --> glyc__R_c + nad_c h_c + hpyr_c + nadph_c --> glyc__R_c + nadp_c hom__L_c + nadp_c <=> aspsa_c + h_c + nadph_c atp_c + hom__L_c --> adp_c + h_c + phom_c hom__L_c + succoa_c --> coa_c + suchms_c glu__L_c + imacp_c --> akg_c + hisp_c h2o_c + hxan_c + nad_c --> h_c + nadh_c + xan_c hxa_e <=> hxa_p accoa_c + hxa_c --> ac_c + hxcoa_c hxan_c + prpp_c --> imp_c + ppi_c h2_c + 2.0 h_c + q8_c --> 2.0 h_p + q8h2_c h2_c + 2.0 h_c + mqn8_c --> 2.0 h_p + mql8_c 2dmmq8_c + h2_c + 2.0 h_c --> 2dmmql8_c + 2.0 h_p h2o_c + pyam5p_c --> pi_c + pydam_c hxan_e <=> hxan_p hxan_p <=> hxan_c h_e <=> h_p 2fe1s_c + iscssh_c + iscu_c --> 4.0 h_c + iscs_c + iscu_2fe2s_c fadh2_c + 2.0 fe2_c + 2.0 iscssh_c + iscu_c --> fad_c + 6.0 h_c + 2.0 iscs_c + iscu_2fe2s_c fadh2_c + 2.0 fe2_c + 2.0 iscssh_c + iscu_2fe2s_c --> fad_c + 6.0 h_c + 2.0 iscs_c + iscu_2fe2s2_c 4.0 h_c + iscu_2fe2s_c --> 2fe2s_c + iscu_c fadh2_c + 2.0 h_c + iscu_2fe2s2_c --> fad_c + iscu_4fe4s_c 4.0 h_c + iscu_4fe4s_c --> 4fe4s_c + iscu_c icit_c + nadp_c <=> akg_c + co2_c + nadph_c chor_c <=> ichor_c chor_c --> ichor_c h2o_c + ichor_c --> 23ddhb_c + pyr_c icit_c --> glx_c + succ_c cys__L_c + iscs_c --> ala__L_c + iscssh_c 5dglcn_c + h_c + nadh_c <=> idon__L_c + nad_c 5dglcn_c + h_c + nadph_c --> idon__L_c + nadp_c h_p + idon__L_p <=> h_c + idon__L_c idon__L_e <=> idon__L_p gln__L_c + prlp_c --> aicar_c + eig3p_c + glu__L_c + h_c eig3p_c --> h2o_c + imacp_c 2cpr5p_c + h_c --> 3ig3p_c + co2_c + h2o_c akg_c + ile__L_c <=> 3mop_c + glu__L_c atp_c + ile__L_c + trnaile_c --> amp_c + iletrna_c + ppi_c atp_c + h2o_c + ile__L_p --> adp_c + h_c + ile__L_c + pi_c h_p + ile__L_p <=> h_c + ile__L_c ile__L_e <=> ile__L_p h2o_c + imp_c <=> fprica_c h2o_c + imp_c + nad_c --> h_c + nadh_c + xmp_c imp_e <=> imp_p h_c + indole_c --> h_p + indole_p h_p + indole_p <=> h_c + indole_c indole_e <=> indole_p inost_p + na1_p --> inost_c + na1_c h2o_c + ins_c --> hxan_c + rib__D_c atp_c + ins_c --> adp_c + h_c + imp_c inost_e <=> inost_p h_p + ins_p --> h_c + ins_c h_p + ins_p <=> h_c + ins_c ins_e <=> ins_p ipdp_c <=> dmpp_c h2mb4p_c + h_c + nadh_c --> h2o_c + ipdp_c + nad_c 3c2hmp_c + nad_c --> 3c4mop_c + h_c + nadh_c 3c2hmp_c <=> 2ippm_c + h2o_c 2ippm_c + h2o_c <=> 3c3hmp_c 3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c + h_c atp_c + h2o_c + isetac_p --> adp_c + h_c + isetac_c + pi_c isetac_e <=> isetac_p atp_c + h2o_c + kdo2lipid4_c --> adp_c + h_c + kdo2lipid4_p + pi_c atp_c + h2o_c + kdo2lipid4_p --> adp_c + h_c + kdo2lipid4_e + pi_c 23dhmb_c + nadp_c <=> alac__S_c + h_c + nadph_c 2ahbut_c + h_c + nadph_c <=> 23dhmp_c + nadp_c acACP_c + h_c + malACP_c --> ACP_c + actACP_c + co2_c accoa_c + h_c + malACP_c --> actACP_c + co2_c + coa_c ctp_c + kdo_c --> ckdo_c + ppi_c h2o_c + kdo8p_c --> kdo_c + pi_c ara5p_c + h2o_c + pep_c --> kdo8p_c + pi_c 3dhgulnp_c + h_c --> co2_c + xu5p__L_c atp_c + h2o_c + k_p --> adp_c + h_c + k_c + pi_c h_p + k_p --> h_c + k_c h_p + k_c --> h_c + k_p k_e <=> k_p lac__L_c + q8_c --> pyr_c + q8h2_c lac__L_c + mqn8_c --> mql8_c + pyr_c h_p + lac__L_p <=> h_c + lac__L_c lac__L_e <=> lac__L_p colipa_p + uLa4n_p --> acolipa_p + udcpp_p h2o_c + lcts_c --> gal_c + glc__D_c h2o_p + lcts_p --> gal_p + glc__D_p LalaDgluMdap_c + h2o_c --> 26dap__M_c + LalaDglu_c LalaDglu_e <=> LalaDglu_p LalaDglu_p + h_p --> LalaDglu_c + h_c LalaLglu_e <=> LalaLglu_p LalaLglu_p + h_p --> LalaLglu_c + h_c h_c + mthgxl_c + nadh_c --> lald__D_c + nad_c h_c + mthgxl_c + nadph_c --> lald__L_c + nadp_c LalaLglu_c + h2o_c --> ala__L_c + glu__L_c h2o_c + lald__L_c + nad_c --> 2.0 h_c + lac__L_c + nadh_c h_c + lald__D_c + nadh_c <=> 12ppd__R_c + nad_c h_c + lald__L_c + nadh_c <=> 12ppd__S_c + nad_c h_p + lcts_c --> h_c + lcts_p lcts_e <=> lcts_p h_p + lcts_p <=> h_c + lcts_c lac__D_c + nad_c <=> h_c + nadh_c + pyr_c lac__D_c + q8_c --> pyr_c + q8h2_c 4mop_c + glu__L_c --> akg_c + leu__L_c atp_c + leu__L_c + trnaleu_c --> amp_c + leutrna_c + ppi_c atp_c + h2o_c + leu__L_p --> adp_c + h_c + leu__L_c + pi_c h_p + leu__L_p <=> h_c + leu__L_c leu__L_e <=> leu__L_p gthrd_c + mthgxl_c --> lgt__S_c atp_c + h2o_c + lipa_cold_c --> adp_c + h_c + lipa_cold_p + pi_c colipa_e + h_e + hdca_e --> h2o_e + hacolipa_e h_e + hdca_e + lipa_e --> h2o_e + halipa_e lipoamp_c --> amp_c + lipopb_c atp_c + lipoate_c --> lipoamp_c + ppi_c atp_c + h2o_c + lipa_c --> adp_c + h_c + lipa_p + pi_c atp_c + h2o_c + lipa_p --> adp_c + h_c + lipa_e + pi_c h_c + ocACP_c --> ACP_c + octapb_c 4fe4s_c + 2.0 amet_c + h_c + nad_c + octapb_c --> 2fe2s_c + 2.0 dad_5_c + 2.0 fe2_c + lipopb_c + 2.0 met__L_c + nadh_c h_p + lipoate_p --> h_c + lipoate_c lipoate_e <=> lipoate_p lipidX_c + u23ga_c --> h_c + lipidAds_c + udp_c 1ddecg3p_p + h2o_p --> ddca_p + glyc3p_p + h_p 1tdecg3p_p + h2o_p --> glyc3p_p + h_p + ttdca_p 1tdec7eg3p_p + h2o_p --> glyc3p_p + h_p + ttdcea_p 1hdecg3p_p + h2o_p --> glyc3p_p + h_p + hdca_p 1hdec9eg3p_p + h2o_p --> glyc3p_p + h_p + hdcea_p 1odecg3p_p + h2o_p --> glyc3p_p + h_p + ocdca_p 1odec11eg3p_p + h2o_p --> glyc3p_p + h_p + ocdcea_p 1agpe120_p + h2o_p --> ddca_p + g3pe_p + h_p 1agpe140_p + h2o_p --> g3pe_p + h_p + ttdca_p 1agpe141_p + h2o_p --> g3pe_p + h_p + ttdcea_p 1agpe160_p + h2o_p --> g3pe_p + h_p + hdca_p 1agpe161_p + h2o_p --> g3pe_p + h_p + hdcea_p 1agpe180_p + h2o_p --> g3pe_p + h_p + ocdca_p 1agpe181_p + h2o_p --> g3pe_p + h_p + ocdcea_p 1agpg120_p + h2o_p --> ddca_p + g3pg_p + h_p 1agpg140_p + h2o_p --> g3pg_p + h_p + ttdca_p 1agpg141_p + h2o_p --> g3pg_p + h_p + ttdcea_p 1agpg160_p + h2o_p --> g3pg_p + h_p + hdca_p 1agpg161_p + h2o_p --> g3pg_p + h_p + hdcea_p 1agpg180_p + h2o_p --> g3pg_p + h_p + ocdca_p 1agpg181_p + h2o_p --> g3pg_p + h_p + ocdcea_p 2ddecg3p_c + h2o_c --> ddca_c + glyc3p_c + 2.0 h_c 2tdecg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + ttdca_c 2tdec7eg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + ttdcea_c 2hdecg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + hdca_c 2hdec9eg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + hdcea_c 2odecg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + ocdca_c 2odec11eg3p_c + h2o_c --> glyc3p_c + 2.0 h_c + ocdcea_c 2agpe120_c + pg120_c --> apg120_c + g3pe_c 2agpe140_c + pg140_c --> apg140_c + g3pe_c 2agpe141_c + pg141_c --> apg141_c + g3pe_c 2agpe160_c + pg160_c --> apg160_c + g3pe_c 2agpe161_c + pg161_c --> apg161_c + g3pe_c 2agpe180_c + pg180_c --> apg180_c + g3pe_c 2agpe181_c + pg181_c --> apg181_c + g3pe_c 2agpg120_c + pg120_c --> apg120_c + g3pg_c 2agpg140_c + pg140_c --> apg140_c + g3pg_c 2agpg141_c + pg141_c --> apg141_c + g3pg_c 2agpg160_c + pg160_c --> apg160_c + g3pg_c 2agpg161_c + pg161_c --> apg161_c + g3pg_c 2agpg180_c + pg180_c --> apg180_c + g3pg_c 2agpg181_c + pg181_c --> apg181_c + g3pg_c 2agpe120_c + h2o_c --> ddca_c + g3pe_c + h_c 2agpe140_c + h2o_c --> g3pe_c + h_c + ttdca_c 2agpe141_c + h2o_c --> g3pe_c + h_c + ttdcea_c 2agpe160_c + h2o_c --> g3pe_c + h_c + hdca_c 2agpe161_c + h2o_c --> g3pe_c + h_c + hdcea_c 2agpe180_c + h2o_c --> g3pe_c + h_c + ocdca_c 2agpe181_c + h2o_c --> g3pe_c + h_c + ocdcea_c 2agpg120_c + h2o_c --> ddca_c + g3pg_c + h_c 2agpg140_c + h2o_c --> g3pg_c + h_c + ttdca_c 2agpg141_c + h2o_c --> g3pg_c + h_c + ttdcea_c 2agpg160_c + h2o_c --> g3pg_c + h_c + hdca_c 2agpg161_c + h2o_c --> g3pg_c + h_c + hdcea_c 2agpg180_c + h2o_c --> g3pg_c + h_c + ocdca_c 2agpg181_c + h2o_c --> g3pg_c + h_c + ocdcea_c nadp_c + ser__L_c <=> 2amsa_c + h_c + nadph_c h_c + lys__L_c --> 15dap_c + co2_c atp_c + lys__L_c + trnalys_c --> amp_c + lystrna_c + ppi_c atp_c + h2o_c + lys__L_p --> adp_c + h_c + lys__L_c + pi_c h_p + lys__L_p --> h_c + lys__L_c h_p + lys__L_c --> h_c + lys__L_p lys__L_e <=> lys__L_p lyx__L_c --> xylu__L_c h_p + lyx__L_p --> h_c + lyx__L_c lyx__L_e <=> lyx__L_p mnl1p_c + nad_c <=> f6p_c + h_c + nadh_c h_c + malACP_c --> acACP_c + co2_c amet_c + malcoa_c --> ahcys_c + malcoame_c mal__D_c + nad_c --> co2_c + nadh_c + pyr_c 2.0 h_p + mal__D_p --> 2.0 h_c + mal__D_c mal__D_e <=> mal__D_p accoa_c + glx_c + h2o_c --> coa_c + h_c + mal__L_c accoa_c + malt_c <=> acmalt_c + coa_c atp_c + h2o_c + malthx_p --> adp_c + h_c + malthx_c + pi_c malthx_e --> malthx_p atp_c + h2o_c + maltpt_p --> adp_c + h_c + maltpt_c + pi_c maltpt_e --> maltpt_p atp_c + h2o_c + malttr_p --> adp_c + h_c + malttr_c + pi_c malttr_e --> malttr_p atp_c + h2o_c + maltttr_p --> adp_c + h_c + maltttr_c + pi_c maltttr_e --> maltttr_p atp_c + h2o_c + malt_p --> adp_c + h_c + malt_c + pi_c malt_p + pep_c --> malt6p_c + pyr_c malt_e --> malt_p 2.0 h_p + mal__L_p --> 2.0 h_c + mal__L_c 3.0 h_p + mal__L_p --> 3.0 h_c + mal__L_c h_p + mal__L_c --> h_c + mal__L_p mal__L_e <=> mal__L_p gdp_c + h_c + man1p_c --> gdpmann_c + pi_c man6p_c <=> f6p_c man6p_p + 2.0 pi_c --> man6p_c + 2.0 pi_p man6p_e <=> man6p_p mana_c + nad_c <=> fruur_c + h_c + nadh_c manglyc_p + pep_c --> man6pglyc_c + pyr_c manglyc_e <=> manglyc_p h2o_c + man6pglyc_c --> glyc__R_c + man6p_c man_p + pep_c --> man6p_c + pyr_c man_e <=> man_p 2mcit_c --> 2mcacn_c + h2o_c micit_c <=> pyr_c + succ_c h2o_c + oaa_c + ppcoa_c --> 2mcit_c + coa_c + h_c ACP_c + malcoa_c <=> coa_c + malACP_c cyan_c + mercppyr_c --> h_c + pyr_c + tcynt_c murein5p5p_p --> ala__D_p + murein5px4p_p murein5p5p_p --> alaala_p + murein5px3p_p murein5p5p5p_p --> 2.0 ala__D_p + murein5px4px4p_p h2o_p + murein5px4p_p --> ala__D_p + murein4px4p_p h2o_p + murein5px4px4p_p --> ala__D_p + murein4px4px4p_p h2o_p + murein5p5p_p --> ala__D_p + murein5p4p_p h2o_p + murein5p4p_p --> ala__D_p + murein4p4p_p h2o_p + murein5p3p_p --> ala__D_p + murein4p3p_p h2o_p + murein4px4p_p --> murein4p4p_p h2o_p + murein3px4p_p --> murein4p3p_p h2o_p + murein5px4p_p --> murein5p4p_p h2o_p + murein4px4px4p_p --> murein4px4p4p_p mal__L_c + nad_c <=> h_c + nadh_c + oaa_c mal__L_c + q8_c --> oaa_c + q8h2_c mal__L_c + mqn8_c --> mql8_c + oaa_c mal__L_c + nad_c --> co2_c + nadh_c + pyr_c mal__L_c + nadp_c --> co2_c + nadph_c + pyr_c 2mecdp_c + 2.0 flxr_c + h_c --> 2.0 flxso_c + h2mb4p_c + h2o_c 2p4c2me_c --> 2mecdp_c + cmp_c h_p + melib_p --> h_c + melib_c h_p + melib_c --> h_c + melib_p melib_e <=> melib_p meoh_e <=> meoh_p meoh_p <=> meoh_c 2me4p_c + ctp_c + h_c --> 4c2me_c + ppi_c atp_c + h2o_c + met__L_c --> amet_c + pi_c + ppi_c atp_c + h2o_c + met__D_p --> adp_c + h_c + met__D_c + pi_c met__D_e <=> met__D_p h2o2_c + met__L_c --> h2o_c + metsox_S__L_c h2o2_c + met__L_c --> h2o_c + metsox_R__L_c 5mthf_c + hcys__L_c --> h_c + met__L_c + thf_c atp_c + h2o_c + metsox_S__L_p --> adp_c + h_c + metsox_S__L_c + pi_c metsox_S__L_e <=> metsox_S__L_p atp_c + h2o_c + metsox_R__L_p --> adp_c + h_c + metsox_R__L_c + pi_c metsox_R__L_e <=> metsox_R__L_p metsox_S__L_c + trdrd_c --> h2o_c + met__L_c + trdox_c metsox_R__L_c + trdrd_c --> h2o_c + met__L_c + trdox_c atp_c + met__L_c + trnamet_c --> amp_c + mettrna_c + ppi_c atp_c + h2o_c + met__L_p --> adp_c + h_c + met__L_c + pi_c met__L_e <=> met__L_p 2.0 h_c + mg2_p <=> 2.0 h_p + mg2_c mg2_e <=> mg2_p mg2_p --> mg2_c atp_c + h2o_c + mg2_p --> adp_c + h_c + mg2_c + pi_c dhap_c --> mthgxl_c + pi_c h2o_c + mi1p__D_c --> inost_c + pi_c 2mcacn_c + h2o_c <=> micit_c mincyc_e <=> mincyc_p h_p + mincyc_p --> h_c + mincyc_e minohp_e --> minohp_p h2o_p + murein5px4p_p --> alaala_p + murein3px4p_p h2o_p + murein4p4p_p --> ala__D_p + murein4p3p_p h2o_p + murein5p5p_p --> alaala_p + murein5p3p_p h2o_p + murein4p3p_p --> ala__D_p + murein3p3p_p h2o_p + murein5px3p_p --> alaala_p + murein3px3p_p h2o_p + murein3px3p_p --> murein3p3p_p h2o_p + murein5px3p_p --> murein5p3p_p h2o_c + malttr_c --> glc__D_c + malt_c h2o_c + maltttr_c --> glc__D_c + malttr_c h2o_c + maltpt_c --> glc__D_c + maltttr_c h2o_c + malthx_c --> glc__D_c + maltpt_c h2o_c + malthp_c --> glc__D_c + malthx_c murein4p4p_p --> 2.0 anhgm4p_p murein4p3p_p --> anhgm3p_p + anhgm4p_p murein3p3p_p --> 2.0 anhgm3p_p murein4px4p4p_p --> anhgm4p_p + murein4px4p_p maltpt_c + pi_c <=> g1p_c + maltttr_c malthx_c + pi_c <=> g1p_c + maltpt_c malthp_c + pi_c <=> g1p_c + malthx_c h_c + mmcoa__S_c --> co2_c + ppcoa_c h_p + mmet_p --> h_c + mmet_c mmet_e <=> mmet_p succoa_c --> mmcoa__S_c h_p + mn2_c --> h_c + mn2_p mn2_p --> mn2_c h2o_c + man6p_c --> man_c + pi_c mnl_p + pep_c --> mnl1p_c + pyr_c mnl_e <=> mnl_p mana_c --> 2ddglcn_c + h2o_c h_p + mn2_p --> h_c + mn2_c mn2_e <=> mn2_p iscssh_c + moadamp_c + nadh_c --> amp_c + iscs_c + moadcosh_c + nad_c ckdo_c + lipidA_c --> cmp_c + h_c + kdolipid4_c ckdo_c + kdolipid4_c --> cmp_c + h_c + kdo2lipid4_c ckdo_c + phphhlipa_c --> cmp_c + h_c + kphphhlipa_c atp_c + h2o_c + mobd_p --> adp_c + h_c + mobd_c + pi_c mobd_e <=> mobd_p ctp_c + h_c + moco_c --> mococdp_c + ppi_c 2.0 h_c + mobd_c + mptamp_c --> amp_c + cu2_c + h2o_c + moco_c gtp_c + h_c + moco_c --> mocogdp_c + ppi_c 3mob_c + h2o_c + mlthf_c --> 2dhp_c + thf_c mal__L_c + o2_c <=> h2o2_c + oaa_c atp_c + h_c + mpt_c --> mptamp_c + ppi_c 2.0 uaagmda_c --> 2.0 h_c + murein5p5p_p + 2.0 udcpdp_c murein5p5p_p + uaagmda_c --> h_c + murein5p5p5p_p + udcpdp_c cpmp_c + cu2_c + 2.0 moadcosh_c --> 5.0 h_c + 2.0 moadcoo_c + mpt_c atp_c + h_c + moadcoo_c --> moadamp_c + ppi_c h_c + msa_c + nadph_c --> 3hpp_c + nadp_c atp_c + h2o_c + mso3_p --> adp_c + h_c + mso3_c + pi_c mso3_e <=> mso3_p 5mta_c + h2o_c --> 5mtr_c + ade_c h2o_c + methf_c <=> 10fthf_c + h_c mlthf_c + nadp_c <=> methf_c + nadph_c 2.0 h_c + mlthf_c + nadh_c --> 5mthf_c + nad_c h2o_c + mdhdhf_c --> mththf_c Nmtrp_c + h2o_c + o2_c --> fald_c + h2o2_c + trp__L_c n2o_e <=> n2o_p n2o_p <=> n2o_c acg5sa_c + h2o_c --> ac_c + glu5sa_c nac_e <=> nac_p nac_p --> nac_c h2o_c + nad_c --> amp_c + 2.0 h_c + nmn_c h_c + mqn8_c + nadh_c --> mql8_c + nad_c 4.0 h_c + nadh_c + q8_c --> 3.0 h_p + nad_c + q8h2_c 4.0 h_c + mqn8_c + nadh_c --> 3.0 h_p + mql8_c + nad_c 2dmmq8_c + 4.0 h_c + nadh_c --> 2dmmql8_c + 3.0 h_p + nad_c h_c + nadh_c + q8_c --> nad_c + q8h2_c 2dmmq8_c + h_c + nadh_c --> 2dmmql8_c + nad_c atp_c + nad_c --> adp_c + h_c + nadp_c h2o_c + nad_c --> adprib_c + h_c + ncam_c h_c + nadph_c + q8_c --> nadp_c + q8h2_c h_c + mqn8_c + nadph_c --> mql8_c + nadp_c 2dmmq8_c + h_c + nadph_c --> 2dmmql8_c + nadp_c h2o_c + nadp_c --> nad_c + pi_c atp_c + dnad_c + nh4_c --> amp_c + h_c + nad_c + ppi_c nad_c + nadph_c --> nadh_c + nadp_c atp_c + h2o_c + nac_c + prpp_c --> adp_c + nicrnt_c + pi_c + ppi_c 3.0 h_p + 2.0 na1_c --> 3.0 h_c + 2.0 na1_p 2.0 h_p + na1_c --> 2.0 h_c + na1_p h_p + na1_c --> h_c + na1_p na1_e <=> na1_p atp_c + gdp_c <=> adp_c + gtp_c atp_c + udp_c <=> adp_c + utp_c atp_c + cdp_c <=> adp_c + ctp_c atp_c + dtdp_c <=> adp_c + dttp_c atp_c + dgdp_c <=> adp_c + dgtp_c atp_c + dudp_c <=> adp_c + dutp_c atp_c + dcdp_c <=> adp_c + dctp_c atp_c + dadp_c <=> adp_c + datp_c nh4_e <=> nh4_p nh4_p <=> nh4_c h_c + nadh_c + 2.0 no_c --> h2o_c + n2o_c + nad_c atp_c + h2o_c + ni2_c --> adp_c + h_c + ni2_p + pi_c h_p + ni2_c --> h_c + ni2_p ni2_e <=> ni2_p ni2_p --> ni2_c atp_c + h2o_c + ni2_p --> adp_c + h_c + ni2_c + pi_c atp_c + h_c + nmn_c --> nad_c + ppi_c h2o_c + nmn_c --> nh4_c + nicrnt_c h2o_c + nmn_c --> h_c + ncam_c + r5p_c nmn_p --> nmn_c h2o_c + nmn_p --> h_c + ncam_c + r5p_c nmn_e <=> nmn_p h2o_c + ncam_c --> nac_c + nh4_c atp_c + h_c + nicrnt_c <=> dnad_c + ppi_c dmbzid_c + nicrnt_c --> 5prdmbz_c + h_c + nac_c 2.0 h_c + prpp_c + quln_c --> co2_c + nicrnt_c + ppi_c h_p + no2_p <=> h_c + no2_c no2_e <=> no2_p no3_p + q8h2_c --> h2o_p + no2_p + q8_c 2.0 h_c + no3_c + q8h2_c --> h2o_c + 2.0 h_p + no2_c + q8_c mql8_c + no3_p --> h2o_p + mqn8_c + no2_p 2.0 h_c + mql8_c + no3_c --> h2o_c + 2.0 h_p + mqn8_c + no2_c no2_c + no3_p --> no2_p + no3_c no3_e <=> no3_p nadh_c + 2.0 no_c + 2.0 o2_c --> h_c + nad_c + 2.0 no3_c nadph_c + 2.0 no_c + 2.0 o2_c --> h_c + nadp_c + 2.0 no3_c novbcn_e <=> novbcn_p h_p + novbcn_p --> h_c + novbcn_e no_e <=> no_p no_p <=> no_c dump_c + h2o_c --> duri_c + pi_c h2o_c + xmp_c --> pi_c + xtsn_c h2o_p + xmp_p --> pi_p + xtsn_p h2o_c + imp_c --> ins_c + pi_c h2o_p + imp_p --> ins_p + pi_p dimp_c + h2o_c --> din_c + pi_c dimp_p + h2o_p --> din_p + pi_p dump_p + h2o_p --> duri_p + pi_p h2o_c + ump_c --> pi_c + uri_c h2o_p + ump_p --> pi_p + uri_p dcmp_c + h2o_c --> dcyt_c + pi_c dcmp_p + h2o_p --> dcyt_p + pi_p cmp_c + h2o_c --> cytd_c + pi_c cmp_p + h2o_p --> cytd_p + pi_p dtmp_c + h2o_c --> pi_c + thymd_c dtmp_p + h2o_p --> pi_p + thymd_p damp_c + h2o_c --> dad_2_c + pi_c damp_p + h2o_p --> dad_2_p + pi_p amp_c + h2o_c --> adn_c + pi_c amp_p + h2o_p --> adn_p + pi_p dgmp_c + h2o_c --> dgsn_c + pi_c dgmp_p + h2o_p --> dgsn_p + pi_p gmp_c + h2o_c --> gsn_c + pi_c gmp_p + h2o_p --> gsn_p + pi_p atp_c + h2o_c --> adp_c + h_c + pi_c h2o_c + itp_c --> h_c + idp_c + pi_c ditp_c + h2o_c --> didp_c + h_c + pi_c h2o_c + xtp_c --> h_c + pi_c + xdp_c gtp_c + h2o_c --> gdp_c + h_c + pi_c gtp_p + h2o_p --> gdp_p + h_p + pi_p ctp_c + h2o_c --> cdp_c + h_c + pi_c dgtp_c + h2o_c --> dgmp_c + h_c + ppi_c ditp_c + h2o_c --> dimp_c + h_c + ppi_c h2o_c + xtp_c --> h_c + ppi_c + xmp_c gtp_c + h2o_c --> gmp_c + h_c + ppi_c dctp_c + h2o_c --> dcmp_c + h_c + ppi_c ctp_c + h2o_c --> cmp_c + h_c + ppi_c datp_c + h2o_c --> damp_c + h_c + ppi_c atp_c + h2o_c --> amp_c + h_c + ppi_c dttp_c + h2o_c --> dtmp_c + h_c + ppi_c h2o_c + utp_c --> h_c + ppi_c + ump_c h2o_c + itp_c --> h_c + imp_c + ppi_c dgtp_c + h2o_c --> dgsn_c + pppi_c gtp_c + h2o_c --> gsn_c + pppi_c 5.0 h_c + 3.0 nadh_c + no2_c --> 2.0 h2o_c + 3.0 nad_c + nh4_c 2.0 h_p + no2_p + 3.0 q8h2_c --> 2.0 h2o_p + nh4_p + 3.0 q8_c 2.0 h_p + 3.0 mql8_c + no2_p --> 2.0 h2o_p + 3.0 mqn8_c + nh4_p atp_c + h2o_c + o16a4colipa_p --> adp_c + h_c + o16a4colipa_e + pi_c colipa_p + o16a4und_p --> h_p + o16a4colipa_p + udcpdp_p 2.0 o16aund_p --> h_p + o16a2und_p + udcpdp_p o16a2und_p + o16aund_p --> h_p + o16a3und_p + udcpdp_p o16a3und_p + o16aund_p --> h_p + o16a4und_p + udcpdp_p accoa_c + ragund_c --> aragund_c + coa_c o16aund_c --> o16aund_p garagund_c + udpgalfur_c --> gfgaragund_c + h_c + udp_c aragund_c + udpg_c --> garagund_c + h_c + udp_c gfgaragund_c + udpg_c --> h_c + o16aund_c + udp_c o2s_e <=> o2s_p o2_e <=> o2_p o2_p <=> o2_c h_c + oaa_c --> co2_c + pyr_c 2obut_c + coa_c --> for_c + ppcoa_c cbp_c + orn_c <=> citr__L_c + h_c + pi_c ocdca_e --> ocdca_p ocdcea_e --> ocdcea_p octa_e <=> octa_p frdp_c + 5.0 ipdp_c --> octdp_c + 5.0 ppi_c atp_c + h_c + octa_c --> amp_c + octapb_c + ppi_c hgmeACP_c --> egmeACP_c + h2o_c h_c + nadph_c + ogmeACP_c --> hgmeACP_c + nadp_c h_c + malACP_c + malcoame_c --> co2_c + coa_c + ogmeACP_c glu__L_c + ohpb_c <=> akg_c + phthr_c 2ohph_c + amet_c --> 2omph_c + ahcys_c + h_c 2ombzl_c + amet_c --> 2ommbl_c + ahcys_c + h_c 3c4mop_c + h_c --> 4mop_c + co2_c 2ommbl_c + 0.5 o2_c --> 2omhmbl_c 2ommbl_c + 2.0 atp_c + 3.0 h2o_c + nad_c --> 2omhmbl_c + 2.0 adp_c + 3.0 h_c + nadh_c + 2.0 pi_c h_c + orot5p_c --> co2_c + ump_c 2omph_c + 0.5 o2_c --> 2ombzl_c 2omph_c + 2.0 atp_c + 3.0 h2o_c + nad_c --> 2ombzl_c + 2.0 adp_c + 3.0 h_c + nadh_c + 2.0 pi_c h2o_c + op4en_c --> 4h2opntn_c 3ophb_c + h_c --> 2oph_c + co2_c 2oph_c + 0.5 o2_c --> 2ohph_c 2oph_c + 2.0 atp_c + 3.0 h2o_c + nad_c --> 2ohph_c + 2.0 adp_c + 3.0 h_c + nadh_c + 2.0 pi_c hpmeACP_c --> epmeACP_c + h2o_c h_c + nadph_c + opmeACP_c --> hpmeACP_c + nadp_c gmeACP_c + h_c + malACP_c --> ACP_c + co2_c + opmeACP_c h_c + orn_c --> co2_c + ptrc_c atp_c + h2o_c + orn_p --> adp_c + h_c + orn_c + pi_c orn_e <=> orn_p 2.0 h_p + orot_p --> 2.0 h_c + orot_c orot_e <=> orot_p orot5p_c + ppi_c <=> orot_c + prpp_c oxur_c + pi_c --> cbp_c + oxam_c h_c + oxalcoa_c --> co2_c + forcoa_c 2oxpaccoa_c + 2.0 h2o_c + nadp_c --> 3oxdhscoa_c + 2.0 h_c + nadph_c 3oxdhscoa_c + coa_c --> 23dhacoa_c + accoa_c 1pyr5c_c + 2.0 h2o_c + nad_c --> glu__L_c + h_c + nadh_c 1pyr5c_c + 2.0 h_c + nadph_c --> nadp_c + pro__L_c atp_c + h2o_c + pa120_c --> adp_c + h_c + pa120_p + pi_c atp_c + h2o_c + pa140_c --> adp_c + h_c + pa140_p + pi_c atp_c + h2o_c + pa141_c --> adp_c + h_c + pa141_p + pi_c atp_c + h2o_c + pa160_c --> adp_c + h_c + pa160_p + pi_c atp_c + h2o_c + pa161_c --> adp_c + h_c + pa161_p + pi_c atp_c + h2o_c + pa180_c --> adp_c + h_c + pa180_p + pi_c atp_c + h2o_c + pa181_c --> adp_c + h_c + pa181_p + pi_c h_p + pacald_p <=> h_c + pacald_c pacald_e <=> pacald_p h_c + nadph_c + o2_c + phaccoa_c --> h2o_c + nadp_c + rephaccoa_c atp_c + coa_c + pac_c --> amp_c + phaccoa_c + ppi_c ala_B_c + atp_c + pant__R_c --> amp_c + h_c + pnto__R_c + ppi_c h2o_c + pa120_c --> 12dgr120_c + pi_c h2o_p + pa120_p --> 12dgr120_p + pi_p h2o_c + pa140_c --> 12dgr140_c + pi_c h2o_p + pa140_p --> 12dgr140_p + pi_p h2o_c + pa141_c --> 12dgr141_c + pi_c h2o_p + pa141_p --> 12dgr141_p + pi_p h2o_c + pa160_c --> 12dgr160_c + pi_c h2o_p + pa160_p --> 12dgr160_p + pi_p h2o_c + pa161_c --> 12dgr161_c + pi_c h2o_p + pa161_p --> 12dgr161_p + pi_p h2o_c + pa180_c --> 12dgr180_c + pi_c h2o_p + pa180_p --> 12dgr180_p + pi_p h2o_c + pa181_c --> 12dgr181_c + pi_c h2o_p + pa181_p --> 12dgr181_p + pi_p udcpp_c + ugmda_c --> uagmda_c + ump_c paps_c + trdrd_c --> 2.0 h_c + pap_c + so3_c + trdox_c grxrd_c + paps_c --> grxox_c + 2.0 h_c + pap_c + so3_c camp_c + h2o_c --> amp_c + h_c 35cgmp_c + h2o_c --> gmp_c + h_c coa_c + nad_c + pyr_c --> accoa_c + co2_c + nadh_c nad_c + pdx5p_c --> h_c + nadh_c + pydx5p_c o2_c + pdx5p_c --> h2o2_c + pydx5p_c dxyl5p_c + nad_c + phthr_c --> co2_c + 2.0 h2o_c + h_c + nadh_c + pdx5p_c + pi_c h2o_c + pdx5p_c --> pi_c + pydxn_c atp_c + h2o_c + pe120_c --> adp_c + h_c + pe120_p + pi_c atp_c + h2o_c + pe140_c --> adp_c + h_c + pe140_p + pi_c atp_c + h2o_c + pe141_c --> adp_c + h_c + pe141_p + pi_c atp_c + h2o_c + pe160_c --> adp_c + h_c + pe160_p + pi_c atp_c + h2o_c + pe161_c --> adp_c + h_c + pe161_p + pi_c atp_c + h2o_c + pe180_c --> adp_c + h_c + pe180_p + pi_c atp_c + h2o_c + pe181_c --> adp_c + h_c + pe181_p + pi_c h2o_p + o2_p + peamn_p --> h2o2_p + nh4_p + pacald_p peamn_e <=> peamn_p 4per_c + nad_c <=> h_c + nadh_c + ohpb_c lipa_p + pe161_p --> 12dgr161_p + enlipa_p lipa_p + pe181_p --> 12dgr181_p + enlipa_p atp_c + f6p_c --> adp_c + fdp_c + h_c atp_c + tag6p__D_c --> adp_c + h_c + tagdp__D_c atp_c + s7p_c --> adp_c + h_c + s17bp_c coa_c + pyr_c --> accoa_c + for_c atp_c + h2o_c + pg120_c --> adp_c + h_c + pg120_p + pi_c atp_c + h2o_c + pg140_c --> adp_c + h_c + pg140_p + pi_c atp_c + h2o_c + pg141_c --> adp_c + h_c + pg141_p + pi_c atp_c + h2o_c + pg160_c --> adp_c + h_c + pg160_p + pi_c atp_c + h2o_c + pg161_c --> adp_c + h_c + pg161_p + pi_c atp_c + h2o_c + pg180_c --> adp_c + h_c + pg180_p + pi_c atp_c + h2o_c + pg181_c --> adp_c + h_c + pg181_p + pi_c gam1p_c <=> gam6p_c 3pg_c + nad_c --> 3php_c + h_c + nadh_c g6p_c <=> f6p_c 3pg_c + atp_c <=> 13dpg_c + adp_c 6pgl_c + h2o_c --> 6pgc_c + h_c 2pglyc_c + h2o_c --> glyclt_c + pi_c 2pg_c <=> 3pg_c g1p_c <=> g6p_c atp_c + h2o_c + pgp120_c --> adp_c + h_c + pgp120_p + pi_c atp_c + h2o_c + pgp140_c --> adp_c + h_c + pgp140_p + pi_c atp_c + h2o_c + pgp141_c --> adp_c + h_c + pgp141_p + pi_c atp_c + h2o_c + pgp160_c --> adp_c + h_c + pgp160_p + pi_c atp_c + h2o_c + pgp161_c --> adp_c + h_c + pgp161_p + pi_c atp_c + h2o_c + pgp180_c --> adp_c + h_c + pgp180_p + pi_c atp_c + h2o_c + pgp181_c --> adp_c + h_c + pgp181_p + pi_c h2o_c + pgp120_c --> pg120_c + pi_c h2o_p + pgp120_p --> pg120_p + pi_p h2o_c + pgp140_c --> pg140_c + pi_c h2o_p + pgp140_p --> pg140_p + pi_p h2o_c + pgp141_c --> pg141_c + pi_c h2o_p + pgp141_p --> pg141_p + pi_p h2o_c + pgp160_c --> pg160_c + pi_c h2o_p + pgp160_p --> pg160_p + pi_p h2o_c + pgp161_c --> pg161_c + pi_c h2o_p + pgp161_p --> pg161_p + pi_p h2o_c + pgp180_c --> pg180_c + pi_c h2o_p + pgp180_p --> pg180_p + pi_p h2o_c + pgp181_c --> pg181_c + pi_c h2o_p + pgp181_p --> pg181_p + pi_p cdpdddecg_c + glyc3p_c --> cmp_c + h_c + pgp120_c cdpdtdecg_c + glyc3p_c --> cmp_c + h_c + pgp140_c cdpdtdec7eg_c + glyc3p_c --> cmp_c + h_c + pgp141_c cdpdhdecg_c + glyc3p_c --> cmp_c + h_c + pgp160_c cdpdhdec9eg_c + glyc3p_c --> cmp_c + h_c + pgp161_c cdpdodecg_c + glyc3p_c --> cmp_c + h_c + pgp180_c cdpdodec11eg_c + glyc3p_c --> cmp_c + h_c + pgp181_c atp_c + h2o_c + pheme_c --> adp_c + h_c + pheme_p + pi_c pheme_p --> pheme_e akg_c + phe__L_c <=> glu__L_c + phpyr_c atp_c + phe__L_c + trnaphe_c --> amp_c + phetrna_c + ppi_c h_p + phe__L_p <=> h_c + phe__L_c phe__L_e <=> phe__L_p 6.0 h2o_p + minohp_p --> inost_p + 6.0 pi_p h_p + pi_p <=> h_c + pi_c pi_e <=> pi_p atp_c + h2o_c + pi_p --> adp_c + h_c + 2.0 pi_c h2o_p + pa120_p --> 2ddecg3p_p + ddca_p h2o_p + pa140_p --> 2tdecg3p_p + ttdca_p h2o_p + pa141_p --> 2tdec7eg3p_p + ttdcea_p h2o_p + pa160_p --> 2hdecg3p_p + hdca_p h2o_p + pa161_p --> 2hdec9eg3p_p + hdcea_p h2o_p + pa180_p --> 2odecg3p_p + ocdca_p h2o_p + pa181_p --> 2odec11eg3p_p + ocdcea_p h2o_p + pe120_p --> 2agpe120_p + ddca_p + h_p h2o_p + pe140_p --> 2agpe140_p + h_p + ttdca_p h2o_p + pe141_p --> 2agpe141_p + h_p + ttdcea_p h2o_p + pe160_p --> 2agpe160_p + h_p + hdca_p h2o_p + pe161_p --> 2agpe161_p + h_p + hdcea_p h2o_p + pe180_p --> 2agpe180_p + h_p + ocdca_p h2o_p + pe181_p --> 2agpe181_p + h_p + ocdcea_p h2o_p + pg120_p --> 2agpg120_p + ddca_p + h_p h2o_p + pg140_p --> 2agpg140_p + h_p + ttdca_p h2o_p + pg141_p --> 2agpg141_p + h_p + ttdcea_p h2o_p + pg160_p --> 2agpg160_p + h_p + hdca_p h2o_p + pg161_p --> 2agpg161_p + h_p + hdcea_p h2o_p + pg180_p --> 2agpg180_p + h_p + ocdca_p h2o_p + pg181_p --> 2agpg181_p + h_p + ocdcea_p h2o_p + pa120_p --> 1ddecg3p_p + ddca_p + h_p h2o_p + pa140_p --> 1tdecg3p_p + h_p + ttdca_p h2o_p + pa141_p --> 1tdec7eg3p_p + h_p + ttdcea_p h2o_p + pa160_p --> 1hdecg3p_p + h_p + hdca_p h2o_p + pa161_p --> 1hdec9eg3p_p + h_p + hdcea_p h2o_p + pa180_p --> 1odecg3p_p + h_p + ocdca_p h2o_p + pa181_p --> 1odec11eg3p_p + h_p + ocdcea_p h2o_p + pe120_p --> 1agpe120_p + ddca_p + h_p h2o_p + pe140_p --> 1agpe140_p + h_p + ttdca_p h2o_p + pe141_p --> 1agpe141_p + h_p + ttdcea_p h2o_p + pe160_p --> 1agpe160_p + h_p + hdca_p h2o_p + pe161_p --> 1agpe161_p + h_p + hdcea_p h2o_p + pe180_p --> 1agpe180_p + h_p + ocdca_p h2o_p + pe181_p --> 1agpe181_p + h_p + ocdcea_p h2o_p + pg120_p --> 1agpg120_p + ddca_p + h_p h2o_p + pg140_p --> 1agpg140_p + h_p + ttdca_p h2o_p + pg141_p --> 1agpg141_p + h_p + ttdcea_p h2o_p + pg160_p --> 1agpg160_p + h_p + hdca_p h2o_p + pg161_p --> 1agpg161_p + h_p + hdcea_p h2o_p + pg180_p --> 1agpg180_p + h_p + ocdca_p h2o_p + pg181_p --> 1agpg181_p + h_p + ocdcea_p man1p_c <=> man6p_c 5aprbu_c + h2o_c --> 4r5au_c + pi_c h2o_c + pmeACP_c --> meoh_c + pimACP_c 4ampm_c + atp_c --> 2mahmp_c + adp_c atp_c + pnto__R_c --> 4ppan_c + adp_c + h_c na1_p + pnto__R_p --> na1_c + pnto__R_c pnto__R_e <=> pnto__R_p nadh_c + poaac_c --> 3amac_c + h2o_c + nad_c coa_c + 2.0 flxso_c + pyr_c <=> accoa_c + co2_c + 2.0 flxr_c + h_c h2o_c + pyr_c + q8_c --> ac_c + co2_c + q8h2_c h2o_c + ppi_c --> h_c + 2.0 pi_c h2o_c + pppi_c --> h_c + pi_c + ppi_c adp_c + ppap_c <=> atp_c + ppa_c ppal_e <=> ppal_p ppal_c <=> ppal_p na1_p + ppa_p --> na1_c + ppa_c ppa_e <=> ppa_p 2.0 5aop_c --> 2.0 h2o_c + h_c + ppbng_c co2_c + h2o_c + pep_c --> h_c + oaa_c + pi_c 4ppcys_c + h_c --> co2_c + pan4p_c atp_c + oaa_c --> adp_c + co2_c + pep_c ppcoa_c + succ_c --> ppa_c + succoa_c h2o_c + ppgpp_c --> gdp_c + ppi_c atp_c + ppi_c <=> adp_c + pppi_c atp_c + pi_c <=> adp_c + ppi_c r1p_c <=> r5p_c 2dr1p_c <=> 2dr5p_c 4ppan_c + ctp_c + cys__L_c --> 4ppcys_c + cmp_c + h_c + ppi_c nad_c + pphn_c --> 34hpp_c + co2_c + nadh_c h_c + pphn_c --> co2_c + h2o_c + phpyr_c 1.5 o2_c + pppg9_c --> 3.0 h2o_c + ppp9_c 3.0 fum_c + pppg9_c --> ppp9_c + 3.0 succ_c h_c + nadh_c + o2_c + pppn_c --> cechddd_c + nad_c h_p + pppn_p <=> h_c + pppn_c pppn_e <=> pppn_p atp_c + h2o_c + pyr_c --> amp_c + 2.0 h_c + pep_c + pi_c h2o_p + ppt_p --> h2_p + pi_p ppt_e <=> ppt_p atp_c + gly_c + pram_c <=> adp_c + gar_c + h_c + pi_c atp_c + fpram_c --> adp_c + air_c + 2.0 h_c + pi_c pran_c --> 2cpr5p_c h2o_c + prbamp_c --> prfp_c 5aizc_c + asp__L_c + atp_c --> 25aics_c + adp_c + h_c + pi_c h2o_c + prbatp_c --> h_c + ppi_c + prbamp_c atp_c + fgam_c + gln__L_c + h2o_c --> adp_c + fpram_c + glu__L_c + h_c + pi_c prfp_c <=> prlp_c fad_c + pro__L_c --> 1pyr5c_c + fadh2_c + h_c atp_c + h2o_c + progly_p --> adp_c + h_c + pi_c + progly_c progly_e <=> progly_p atp_c + pro__L_c + trnapro_c --> amp_c + ppi_c + protrna_c atp_c + h2o_c + pro__L_p --> adp_c + h_c + pi_c + pro__L_c h_p + pro__L_p <=> h_c + pro__L_c na1_p + pro__L_p --> na1_c + pro__L_c pro__L_e <=> pro__L_p atp_c + r5p_c <=> amp_c + h_c + prpp_c h_p + psclys_p --> h_c + psclys_c psclys_e <=> psclys_p pep_c + skm5p_c <=> 3psme_c + pi_c h_c + ps120_c --> co2_c + pe120_c h_c + ps140_c --> co2_c + pe140_c h_c + ps141_c --> co2_c + pe141_c h_c + ps160_c --> co2_c + pe160_c h_c + ps161_c --> co2_c + pe161_c h_c + ps180_c --> co2_c + pe180_c h_c + ps181_c --> co2_c + pe181_c 3php_c + glu__L_c --> akg_c + pser__L_c pser__L_e <=> pser__L_p h2o_c + pser__L_c --> pi_c + ser__L_c h2o_p + pser__L_p --> pi_p + ser__L_p cdpdddecg_c + ser__L_c --> cmp_c + h_c + ps120_c cdpdtdecg_c + ser__L_c --> cmp_c + h_c + ps140_c cdpdtdec7eg_c + ser__L_c --> cmp_c + h_c + ps141_c cdpdhdecg_c + ser__L_c --> cmp_c + h_c + ps160_c cdpdhdec9eg_c + ser__L_c --> cmp_c + h_c + ps161_c cdpdodecg_c + ser__L_c --> cmp_c + h_c + ps180_c cdpdodec11eg_c + ser__L_c --> cmp_c + h_c + ps181_c pi_c + ppcoa_c --> coa_c + ppap_c accoa_c + pi_c <=> actp_c + coa_c h2o_p + thrp_p --> pi_p + thr__L_p atp_c + h_c + pan4p_c --> dpcoa_c + ppi_c orn_c + ptrc_p <=> orn_p + ptrc_c akg_c + ptrc_c --> 4abutn_c + glu__L_c atp_c + h2o_c + ptrc_p --> adp_c + h_c + pi_c + ptrc_c h_p + ptrc_p --> h_c + ptrc_c ptrc_e <=> ptrc_p adn_c + pi_c <=> ade_c + r1p_c dad_2_c + pi_c <=> 2dr1p_c + ade_c gsn_c + pi_c <=> gua_c + r1p_c dgsn_c + pi_c <=> 2dr1p_c + gua_c ins_c + pi_c <=> hxan_c + r1p_c din_c + pi_c <=> 2dr1p_c + hxan_c pi_c + xtsn_c <=> r1p_c + xan_c h2o_c + o2_c + pyam5p_c --> h2o2_c + nh4_c + pydx5p_c atp_c + pydam_c --> adp_c + h_c + pyam5p_c pydam_e <=> pydam_p pydam_p --> pydam_c atp_c + pydx_c --> adp_c + h_c + pydx5p_c atp_c + pydxn_c --> adp_c + h_c + pdx5p_c pydxn_e <=> pydxn_p pydxn_p --> pydxn_c h2o_c + pydx5p_c --> pi_c + pydx_c pydx_e <=> pydx_p pydx_p --> pydx_c adp_c + h_c + pep_c --> atp_c + pyr_c pi_c + uri_c <=> r1p_c + ura_c h_c + nadh_c + o2_c + ura_c --> nad_c + uracp_c h_p + pyr_p <=> h_c + pyr_c pyr_e <=> pyr_p 2.0 o2_c + q8h2_c --> 2.0 h_c + 2.0 o2s_c + q8_c mql8_c + 2.0 o2_c --> 2.0 h_c + mqn8_c + 2.0 o2s_c quin_e <=> quin_p quin_p <=> quin_c nad_c + quin_c <=> 3dhq_c + 2.0 h_c + nadh_c dhap_c + iasp_c --> 2.0 h2o_c + pi_c + quln_c atp_c + r15bp_c --> adp_c + prpp_c atp_c + r1p_c --> adp_c + h_c + r15bp_c h2o_c + r5p_c --> pi_c + rib__D_c h2o_p + r5p_p --> pi_p + rib__D_p r5p_e <=> r5p_p atp_c + ribflv_c --> adp_c + fmn_c + h_c 4r5au_c + db4p_c --> dmlz_c + 2.0 h2o_c + pi_c 2.0 dmlz_c --> 4r5au_c + ribflv_c atp_c + rib__D_c --> adp_c + h_c + r5p_c atp_c + rbl__L_c --> adp_c + h_c + ru5p__L_c ru5p__L_c <=> xu5p__D_c rephaccoa_c <=> 2oxpaccoa_c rfamp_e <=> rfamp_p h_p + rfamp_p --> h_c + rfamp_e dtdprmn_c + kphphhlipa_c --> dtdp_c + h_c + icolipa_c rhcys_c --> dhptd_c + hcys__L_c atp_c + h2o_c + rib__D_p --> adp_c + h_c + pi_c + rib__D_c rib__D_e <=> rib__D_p rmn_c <=> rml_c atp_c + rml_c --> adp_c + h_c + rml1p_c rmn_e <=> rmn_p h_p + rmn_p --> h_c + rmn_c rml1p_c <=> dhap_c + lald__L_c adp_c + trdrd_c --> dadp_c + h2o_c + trdox_c adp_c + grxrd_c --> dadp_c + grxox_c + h2o_c gdp_c + trdrd_c --> dgdp_c + h2o_c + trdox_c gdp_c + grxrd_c --> dgdp_c + grxox_c + h2o_c cdp_c + trdrd_c --> dcdp_c + h2o_c + trdox_c cdp_c + grxrd_c --> dcdp_c + grxox_c + h2o_c trdrd_c + udp_c --> dudp_c + h2o_c + trdox_c grxrd_c + udp_c --> dudp_c + grxox_c + h2o_c atp_c + 2.0 flxr_c + 2.0 h_c --> datp_c + 2.0 flxso_c + h2o_c 2.0 flxr_c + gtp_c + 2.0 h_c --> dgtp_c + 2.0 flxso_c + h2o_c ctp_c + 2.0 flxr_c + 2.0 h_c --> dctp_c + 2.0 flxso_c + h2o_c 2.0 flxr_c + 2.0 h_c + utp_c --> dutp_c + 2.0 flxso_c + h2o_c ru5p__D_c <=> xu5p__D_c r5p_c <=> ru5p__D_c 5prdmbz_c + h2o_c --> pi_c + rdmbzi_c 2fe1s_c + atp_c + h2o_c + sufbcd_c + sufsesh_c --> adp_c + 5.0 h_c + pi_c + sufbcd_2fe2s_c + sufse_c atp_c + fadh2_c + 2.0 fe2_c + h2o_c + sufbcd_c + 2.0 sufsesh_c --> adp_c + fad_c + 7.0 h_c + pi_c + sufbcd_2fe2s_c + 2.0 sufse_c atp_c + fadh2_c + 2.0 fe2_c + h2o_c + sufbcd_2fe2s_c + 2.0 sufsesh_c --> adp_c + fad_c + 7.0 h_c + pi_c + sufbcd_2fe2s2_c + 2.0 sufse_c 4.0 h_c + sufbcd_2fe2s_c --> 2fe2s_c + sufbcd_c fadh2_c + 2.0 h_c + sufbcd_2fe2s2_c --> fad_c + sufbcd_4fe4s_c 4.0 h_c + sufbcd_4fe4s_c --> 4fe4s_c + sufbcd_c s7p_c --> gmhep7p_c 2.0 h2o_c + 2.0 h_c + sucarg_c --> co2_c + 2.0 nh4_c + sucorn_c atp_c + gtp_c + h2o_c + so4_c --> aps_c + gdp_c + pi_c + ppi_c h2o_c + o2_c + sarcs_c --> fald_c + gly_c + h2o2_c nad_c + sbt6p_c <=> f6p_c + h_c + nadh_c pep_c + sbt__D_p --> pyr_c + sbt6p_c sbt__D_e <=> sbt__D_p cys__L_c + sufse_c --> ala__L_c + sufsesh_c h2o_c + sl26da_c --> 26dap_LL_c + succ_c akg_c + sl26da_c <=> glu__L_c + sl2a6o_c selnp_c + sertrna_sec_c --> h_c + pi_c + sectrna_c 4.0 gthrd_c + 2.0 h_c + slnt_c --> dgslnt_c + gthox_c + 3.0 h2o_c dgslnt_c + h_c + nadph_c --> gslnt_c + gthrd_c + nadp_c gslnt_c + nadph_c --> gthrd_c + nadp_c + seln_c atp_c + h2o_c + seln_c --> amp_c + pi_c + selnp_c mql8_c + sel_c --> h2o_c + mqn8_c + slnt_c sel_e <=> sel_p 2.0 h_p + sel_p --> 2.0 h_c + sel_c akg_c + h_c + ichor_c --> 2sephchc_c + co2_c atp_c + h_c + ser__L_c <=> ppi_c + seramp_c accoa_c + ser__L_c <=> acser_c + coa_c ser__D_c --> nh4_c + pyr_c ser__L_c --> nh4_c + pyr_c atp_c + ser__L_c + trnaser_c --> amp_c + ppi_c + sertrna_c atp_c + ser__L_c + trnasecys_c --> amp_c + ppi_c + sertrna_sec_c h_p + ser__L_p <=> h_c + ser__L_c na1_p + ser__L_p --> na1_c + ser__L_c ser__L_e <=> ser__L_p Sfglutth_c + h2o_c --> for_c + gthrd_c + h_c h2o_c + sucglu_c --> glu__L_c + succ_c h2o_c + nad_c + sucgsa_c --> 2.0 h_c + nadh_c + sucglu_c 2sephchc_c --> 2shchc_c + pyr_c dscl_c + nad_c --> h_c + nadh_c + scl_c fe2_c + scl_c --> 3.0 h_c + sheme_c 3dhsk_c + h_c + nadph_c <=> nadp_c + skm_c atp_c + skm_c --> adp_c + h_c + skm5p_c cys__L_c + suchms_c --> cyst__L_c + h_c + succ_c h_p + skm_p --> h_c + skm_c skm_e <=> skm_p slnt_e <=> slnt_p h_p + slnt_p --> h_c + slnt_c so2_e <=> so2_p so2_p <=> so2_c so3_e <=> so3_p h_p + so4_p --> h_c + so4_c so4_e <=> so4_p akg_c + sucorn_c --> glu__L_c + sucgsa_c accoa_c + spmd_c --> N1aspmd_c + coa_c + h_c accoa_c + spmd_c --> coa_c + h_c + n8aspmd_c atp_c + h2o_c + spmd_p --> adp_c + h_c + pi_c + spmd_c h_p + spmd_c --> h_c + spmd_p spmd_e <=> spmd_p ametam_c + ptrc_c --> 5mta_c + h_c + spmd_c 2.0 h_c + 2.0 o2s_c --> h2o2_c + o2_c 2.0 h_p + 2.0 o2s_p --> h2o2_p + o2_p h2o_c + nad_c + sucsal_c --> 2.0 h_c + nadh_c + succ_c h2o_c + nadp_c + sucsal_c --> 2.0 h_c + nadph_c + succ_c asp__L_p + succ_c --> asp__L_c + succ_p atp_c + coa_c + sucbz_c --> amp_c + ppi_c + sbzcoa_c 2shchc_c --> h2o_c + sucbz_c 2.0 h_p + succ_p --> 2.0 h_c + succ_c 3.0 h_p + succ_p --> 3.0 h_c + succ_c h_p + succ_c --> h_c + succ_p succ_e <=> succ_p q8_c + succ_c --> fum_c + q8h2_c fum_p + succ_c --> fum_c + succ_p mal__L_p + succ_c --> mal__L_c + succ_p atp_c + coa_c + succ_c <=> adp_c + pi_c + succoa_c sucr_e <=> sucr_p succ_c + tartr__D_p --> succ_p + tartr__D_c pep_c + sucr_p --> pyr_c + suc6p_c atp_c + h2o_c + sulfac_p --> adp_c + h_c + pi_c + sulfac_c sulfac_e <=> sulfac_p 5.0 h_c + 3.0 nadph_c + so3_c --> 3.0 h2o_c + h2s_c + 3.0 nadp_c atp_c + h2o_c + so4_p --> adp_c + h_c + pi_c + so4_c tdec2eACP_c <=> cdec3eACP_c altrn_c + nad_c <=> h_c + nadh_c + tagur_c g3p_c + s7p_c <=> e4p_c + f6p_c tartr__L_c --> h2o_c + oaa_c tartr__D_e <=> tartr__D_p succ_c + tartr__L_p <=> succ_p + tartr__L_c tartr__L_e <=> tartr__L_p 3.0 h_p + tartr__D_p --> 3.0 h_c + tartr__D_c akg_c + o2_c + taur_c --> aacald_c + co2_c + h_c + so3_c + succ_c atp_c + h2o_c + taur_p --> adp_c + h_c + pi_c + taur_c taur_e <=> taur_p tcynt_e <=> tcynt_p h2o_c + thmpp_c --> h_c + pi_c + thmmp_c accoa_c + dtdp4addg_c --> coa_c + dtdp4aaddg_c + h_c dtdp4d6dg_c + glu__L_c --> akg_c + dtdp4addg_c dtdp4d6dg_c --> dtdp4d6dm_c dtdp4d6dm_c + h_c + nadph_c --> dtdprmn_c + nadp_c dtdpglu_c --> dtdp4d6dg_c + h2o_c atp_c + lipidAds_c --> adp_c + h_c + lipidA_c dsbcox_p + dsbdrd_c --> dsbcrd_p + dsbdox_c dsbdrd_c + dsbgox_p --> dsbdox_c + dsbgrd_p tagdp__D_c <=> dhap_c + g3p_c 2.0 h_p + nadh_c + nadp_c --> 2.0 h_c + nad_c + nadph_c h2o_c + succoa_c + thdp_c --> coa_c + sl2a6o_c h2o_c + methf_c --> 5fthf_c + h_c h2o2_c + trdrd_c --> 2.0 h2o_c + trdox_c h_p + thymd_p --> h_c + thymd_c h_p + thymd_p <=> h_c + thymd_c thymd_e <=> thymd_p atp_c + h2o_c + thm_p --> adp_c + h_c + pi_c + thm_c thm_e <=> thm_p athr__L_c --> acald_c + gly_c thr__L_c --> acald_c + gly_c nad_c + thr__L_c --> 2aobut_c + h_c + nadh_c thr__L_c --> 2obut_c + nh4_c thrp_e <=> thrp_p h2o_c + phom_c --> pi_c + thr__L_c atp_c + thr__L_c + trnathr_c --> amp_c + ppi_c + thrtrna_c atp_c + h2o_c + thr__L_p --> adp_c + h_c + pi_c + thr__L_c h_p + thr__L_c --> h_c + thr__L_p h_p + thr__L_p <=> h_c + thr__L_c na1_p + thr__L_p --> na1_c + thr__L_c thr__L_e <=> thr__L_p h_p + thym_c --> h_c + thym_p thym_e <=> thym_p atp_c + dhgly_c + dxyl5p_c + h_c + iscssh_c + nadph_c --> 4mpetz_c + amp_c + co2_c + 2.0 h2o_c + iscs_c + nadp_c + ppi_c r5p_c + xu5p__D_c <=> g3p_c + s7p_c e4p_c + xu5p__D_c <=> f6p_c + g3p_c h_c + mql8_c + tmao_c --> h2o_c + mqn8_c + tma_c h_p + mql8_c + tmao_p --> h2o_p + mqn8_c + tma_p 2dmmql8_c + h_c + tmao_c --> 2dmmq8_c + h2o_c + tma_c 2dmmql8_c + h_p + tmao_p --> 2dmmq8_c + h2o_p + tma_p tmao_e <=> tmao_p tma_e <=> tma_p atp_c + thymd_c --> adp_c + dtmp_c + h_c pi_c + thymd_c <=> 2dr1p_c + thym_c dump_c + mlthf_c --> dhf_c + dtmp_c atp_c + thm_c --> adp_c + h_c + thmmp_c atp_c + thmmp_c --> adp_c + thmpp_c 2mahmp_c + 4mpetz_c + h_c --> ppi_c + thmmp_c dhap_c <=> g3p_c atp_c + dpcoa_c --> 2tpr3dpcoa_c + ade_c h_c + nadph_c + trdox_c --> nadp_c + trdrd_c h2o_c + tre6p_c --> g6p_c + glc__D_c h2o_c + tre6p_c --> pi_c + tre_c g6p_c + udpg_c --> h_c + tre6p_c + udp_c h2o_c + tre_c --> 2.0 glc__D_c h2o_p + tre_p --> 2.0 glc__D_p pep_c + tre_p --> pyr_c + tre6p_c tre_e <=> tre_p h2o_c + trp__L_c <=> indole_c + nh4_c + pyr_c 3ig3p_c + ser__L_c --> g3p_c + h2o_c + trp__L_c indole_c + ser__L_c --> h2o_c + trp__L_c 3ig3p_c --> g3p_c + indole_c atp_c + trnatrp_c + trp__L_c --> amp_c + ppi_c + trptrna_c h_p + trp__L_p <=> h_c + trp__L_c trp__L_e <=> trp__L_p 2h3oppan_c + h_c + nadh_c <=> glyc__R_c + nad_c atp_c + h2o_c + tsul_p --> adp_c + h_c + pi_c + tsul_c tsul_e <=> tsul_p ttdca_e --> ttdca_p ttdcea_e --> ttdcea_p ttrcyc_e <=> ttrcyc_p h_p + ttrcyc_p --> h_c + ttrcyc_e atp_c + h2o_c + tungs_p --> adp_c + h_c + pi_c + tungs_c tungs_e <=> tungs_p tym_e <=> tym_p amet_c + nadph_c + tyr__L_c --> 4crsol_c + dad_5_c + dhgly_c + h_c + met__L_c + nadp_c h2o_p + o2_p + tym_p --> 4hoxpacd_p + h2o2_p + nh4_p h2o_p + tyrp_p --> pi_p + tyr__L_p tyrp_e <=> tyrp_p akg_c + tyr__L_c <=> 34hpp_c + glu__L_c atp_c + trnatyr_c + tyr__L_c --> amp_c + ppi_c + tyrtrna_c h_p + tyr__L_p <=> h_c + tyr__L_c tyr__L_e <=> tyr__L_p adp_c + h_c + thmpp_c --> athtp_c + pi_c 3hmrsACP_c + u3hga_c --> ACP_c + h_c + u23ga_c 26dap__M_c + atp_c + uamag_c --> adp_c + h_c + pi_c + ugmd_c h2o_p + udpacgal_p --> acgal1p_p + 2.0 h_p + ump_p h2o_p + uacgam_p --> acgam1p_p + 2.0 h_p + ump_p uacgam_e <=> uacgam_p h2o_c + 2.0 nad_c + uacmam_c --> 3.0 h_c + 2.0 nadh_c + uacmamu_c uacgam_c <=> uacmam_c 3hmrsACP_c + uacgam_c <=> ACP_c + u3aga_c pep_c + uacgam_c --> pi_c + uaccg_c acgam1p_c + h_c + utp_c --> ppi_c + uacgam_c uacgam_c + uagmda_c --> h_c + uaagmda_c + udp_c atp_c + glu__D_c + uama_c --> adp_c + h_c + pi_c + uamag_c ala__L_c + atp_c + uamr_c --> adp_c + h_c + pi_c + uama_c h_c + nadph_c + uaccg_c --> nadp_c + uamr_c h2o_c + udcpdp_c --> h_c + pi_c + udcpp_c frdp_c + 8.0 ipdp_c --> 8.0 ppi_c + udcpdp_c h2o_p + udcpdp_p --> h_p + pi_p + udcpp_p udcpp_p --> udcpp_c udpacgal_e <=> udpacgal_p udpg_c <=> udpgal_c udpgal_c --> udpgalfur_c h2o_p + udpgal_p --> gal1p_p + 2.0 h_p + ump_p udpgal_e <=> udpgal_p h2o_c + 2.0 nad_c + udpg_c --> 3.0 h_c + 2.0 nadh_c + udpglcur_c nad_c + udpglcur_c --> co2_c + nadh_c + udpLa4o_c udpglcur_e <=> udpglcur_p h2o_p + udpg_p --> g1p_p + 2.0 h_p + ump_p udpg_e <=> udpg_p glu__L_c + udpLa4o_c <=> akg_c + udpLa4n_c h2o_p + udpglcur_p --> glcur1p_p + 2.0 h_p + ump_p gal1p_c + udpg_c <=> g1p_c + udpgal_c h2o_c + 2.0 h_c + urdglyc_c --> co2_c + glx_c + 2.0 nh4_c alaala_c + atp_c + ugmd_c --> adp_c + h_c + pi_c + ugmda_c h2o_c + u3aga_c --> ac_c + u3hga_c 10fthf_c + udpLa4n_c --> h_c + thf_c + udpLa4fn_c uLa4n_c --> uLa4n_p LalaDgluMdap_c + atp_c + uamr_c --> adp_c + h_c + pi_c + ugmd_c h2o_c + um4p_c --> ala__D_c + ugmd_c LalaDgluMdapDala_c + atp_c + uamr_c --> adp_c + h_c + pi_c + um4p_c atp_c + ump_c <=> adp_c + udp_c ump_e <=> ump_p h2o_c + uLa4fn_c --> for_c + uLa4n_c udcpp_c + udpLa4fn_c --> uLa4fn_c + udp_c 2.0 amet_c + uppg3_c --> 2.0 ahcys_c + dscl_c + h_c hmbil_c --> h2o_c + uppg3_c 4.0 h_c + uppg3_c --> 4.0 co2_c + cpppg3_c prpp_c + ura_c --> ppi_c + ump_c h2o_c + uracp_c --> cbm_c + h_c + poaac_c h_p + ura_p --> h_c + ura_c h_p + ura_p <=> h_c + ura_c ura_e <=> ura_p nad_c + urdglyc_c --> h_c + nadh_c + oxur_c urea_e <=> urea_p urea_p <=> urea_c 2.0 h2o_c + o2_c + urate_c --> alltn_c + co2_c + h2o2_c h2o_c + uri_c --> rib__D_c + ura_c gtp_c + uri_c --> gdp_c + h_c + ump_c h_p + uri_p --> h_c + uri_c h_p + uri_p <=> h_c + uri_c uri_e <=> uri_p h2o_c + u23ga_c --> 2.0 h_c + lipidX_c + ump_c akg_c + val__L_c <=> 3mob_c + glu__L_c atp_c + trnaval_c + val__L_c --> amp_c + ppi_c + valtrna_c atp_c + h2o_c + val__L_p --> adp_c + h_c + pi_c + val__L_c h_p + val__L_p <=> h_c + val__L_c val__L_e <=> val__L_p 3mob_c + ala__L_c <=> pyr_c + val__L_c 2.0 h_c + mptamp_c + tungs_c --> amp_c + cu2_c + h2o_c + wco_c xu5p__L_c --> ru5p__L_c h2o_c + nad_c + xan_c --> h_c + nadh_c + urate_c h_p + xan_p --> h_c + xan_c xan_e <=> xan_p xan_p <=> xan_c xmp_e <=> xmp_p prpp_c + xan_c --> ppi_c + xmp_c h2o_c + xtsn_c --> rib__D_c + xan_c h_p + xtsn_p <=> h_c + xtsn_c xtsn_e <=> xtsn_p xyl__D_c <=> xylu__D_c glc__D_c <=> fru_c atp_c + xylu__D_c --> adp_c + h_c + xu5p__D_c atp_c + xylu__L_c --> adp_c + h_c + xu5p__L_c h_p + xylu__L_p --> h_c + xylu__L_c xylu__L_e <=> xylu__L_p atp_c + h2o_c + xyl__D_p --> adp_c + h_c + pi_c + xyl__D_c h_p + xyl__D_p --> h_c + xyl__D_c xyl__D_e <=> xyl__D_p atp_c + h2o_c + zn2_c --> adp_c + h_c + pi_c + zn2_p h_p + zn2_c --> h_c + zn2_p zn2_p --> zn2_c atp_c + h2o_c + zn2_p --> adp_c + h_c + pi_c + zn2_c zn2_e <=> zn2_p | \n",
"
\n", " | fluxes | \n", "reduced_costs | \n", "
---|---|---|
DM_4crsol_c | \n", "0.000219 | \n", "0.000000 | \n", "
DM_5drib_c | \n", "0.000221 | \n", "0.000000 | \n", "
DM_aacald_c | \n", "-0.000000 | \n", "0.000000 | \n", "
DM_amob_c | \n", "0.000002 | \n", "0.000000 | \n", "
... | \n", "... | \n", "... | \n", "
ZN2t3pp | \n", "0.000000 | \n", "-0.002074 | \n", "
ZN2tpp | \n", "0.000335 | \n", "0.000000 | \n", "
ZNabcpp | \n", "0.000000 | \n", "-0.008295 | \n", "
Zn2tex | \n", "0.000335 | \n", "-0.000000 | \n", "
2583 rows × 2 columns
\n", "\n", " | fluxes | \n", "reduced_costs | \n", "
---|---|---|
DM_4crsol_c | \n", "0.000219 | \n", "0.000000 | \n", "
DM_5drib_c | \n", "0.000221 | \n", "0.000000 | \n", "
DM_aacald_c | \n", "-0.000000 | \n", "0.000000 | \n", "
DM_amob_c | \n", "0.000002 | \n", "0.000000 | \n", "
... | \n", "... | \n", "... | \n", "
ZN2t3pp | \n", "0.000000 | \n", "-0.002074 | \n", "
ZN2tpp | \n", "0.000335 | \n", "0.000000 | \n", "
ZNabcpp | \n", "0.000000 | \n", "-0.008295 | \n", "
Zn2tex | \n", "0.000335 | \n", "-0.000000 | \n", "
2583 rows × 2 columns
\n", "\n", " | fluxes | \n", "reduced_costs | \n", "
---|---|---|
DM_4crsol_c | \n", "0.000219 | \n", "0.0 | \n", "
DM_5drib_c | \n", "0.000221 | \n", "0.0 | \n", "
DM_amob_c | \n", "0.000002 | \n", "0.0 | \n", "
DM_mththf_c | \n", "0.000440 | \n", "0.0 | \n", "
... | \n", "... | \n", "... | \n", "
USHD | \n", "0.019113 | \n", "0.0 | \n", "
VALTA | \n", "-0.415702 | \n", "0.0 | \n", "
ZN2tpp | \n", "0.000335 | \n", "0.0 | \n", "
Zn2tex | \n", "0.000335 | \n", "-0.0 | \n", "
438 rows × 2 columns
\n", "Id | PGK | \n", "
Name | Phosphoglycerate kinase | \n", "
Stoichiometry | 3pg_c + atp_c <=> 13dpg_c + adp_c | \n", "
GPR | b2926 | \n", "
Lower bound | -1000.000000 | \n", "
Upper bound | 1000.000000 | \n", "
Id | E4PD | \n", "
Name | Erythrose 4-phosphate dehydrogenase | \n", "
Stoichiometry | e4p_c + h2o_c + nad_c <=> 4per_c + 2.0 h_c + nadh_c | \n", "
GPR | b2927 or b1779 | \n", "
Lower bound | -1000.000000 | \n", "
Upper bound | 1000.000000 | \n", "
Id | 12DGR120tipp | \n", "
Name | 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0) | \n", "
Stoichiometry | 12dgr120_p --> 12dgr120_c | \n", "
GPR | \n", " |
Lower bound | 0.000000 | \n", "
Upper bound | 1000.000000 | \n", "
Id | glc__D_c | \n", "
Name | D-Glucose | \n", "
Formula | C6H12O6 | \n", "
\n", " | reaction_id | \n", "reaction_name | \n", "lower_bound | \n", "upper_bound | \n", "
---|---|---|---|---|
0 | \n", "EX_ca2_e | \n", "Calcium exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
1 | \n", "EX_cbl1_e | \n", "Cob(I)alamin exchange | \n", "-0.01 | \n", "1000.0 | \n", "
2 | \n", "EX_cl_e | \n", "Chloride exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
3 | \n", "EX_co2_e | \n", "CO2 exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
21 | \n", "EX_slnt_e | \n", "Selenite exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
22 | \n", "EX_so4_e | \n", "Sulfate exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
23 | \n", "EX_tungs_e | \n", "Tungstate exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
24 | \n", "EX_zn2_e | \n", "Zinc exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
25 rows × 4 columns
\n", "