{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Getting started with cameo " ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "**cameo** reuses and extends model data structures defined by [cobrapy](https://opencobra.github.io/cobrapy/) (**CO**nstraints-**B**ased **R**econstruction and **A**nalysis tool for **Py**thon). So, in addition to following this quick start guide and other **cameo** tutorials, we encourage you to explore cobrapy's [documentation](https://cobrapy.readthedocs.org/en/latest/cobra.core.html) as well." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Step 1: Load a model\n", "-------------------\n", "\n", "Loading a model is easy. Just import the `~cameo.io.load_model` function." ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [] }, "metadata": {}, "output_type": "display_data" }, { "data": { "application/javascript": [ "\n", "(function(global) {\n", " function now() {\n", " return new Date();\n", " }\n", "\n", " if (typeof (window._bokeh_onload_callbacks) === \"undefined\") {\n", " window._bokeh_onload_callbacks = [];\n", " }\n", "\n", " function run_callbacks() {\n", " window._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n", " delete window._bokeh_onload_callbacks\n", " console.info(\"Bokeh: all callbacks have finished\");\n", " }\n", "\n", " function load_libs(js_urls, callback) {\n", " window._bokeh_onload_callbacks.push(callback);\n", " if (window._bokeh_is_loading > 0) {\n", " console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n", " return null;\n", " }\n", " if (js_urls == null || js_urls.length === 0) {\n", " run_callbacks();\n", " return null;\n", " }\n", " console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n", " window._bokeh_is_loading = js_urls.length;\n", " for (var i = 0; i < js_urls.length; i++) {\n", " var url = js_urls[i];\n", " var s = document.createElement('script');\n", " s.src = url;\n", " s.async = false;\n", " s.onreadystatechange = s.onload = function() {\n", " window._bokeh_is_loading--;\n", " if (window._bokeh_is_loading === 0) {\n", " console.log(\"Bokeh: all BokehJS libraries loaded\");\n", " run_callbacks()\n", " }\n", " };\n", " s.onerror = function() {\n", " console.warn(\"failed to load library \" + url);\n", " };\n", " console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n", " document.getElementsByTagName(\"head\")[0].appendChild(s);\n", " }\n", " };\n", "\n", " var js_urls = ['https://cdn.pydata.org/bokeh/release/bokeh-0.11.1.min.js', 'https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.11.1.min.js', 'https://cdn.pydata.org/bokeh/release/bokeh-compiler-0.11.1.min.js'];\n", "\n", " var inline_js = [\n", " function(Bokeh) {\n", " Bokeh.set_log_level(\"info\");\n", " },\n", " \n", " function(Bokeh) {\n", " Bokeh.$(\"#5071fad5-f39d-4c66-8c32-db39c8b3182d\").text(\"BokehJS successfully loaded\");\n", " },\n", " function(Bokeh) {\n", " console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.11.1.min.css\");\n", " Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.11.1.min.css\");\n", " console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.11.1.min.css\");\n", " Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.11.1.min.css\");\n", " }\n", " ];\n", "\n", " function run_inline_js() {\n", " for (var i = 0; i < inline_js.length; i++) {\n", " inline_js[i](window.Bokeh);\n", " }\n", " }\n", "\n", " if (window._bokeh_is_loading === 0) {\n", " console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n", " run_inline_js();\n", " } else {\n", " load_libs(js_urls, function() {\n", " console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n", " run_inline_js();\n", " });\n", " }\n", "}(this));" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "from cameo import load_model" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "For example, load the most current genome-scale metabolic reconstruction of _Escherichia coli_." ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": false }, "outputs": [], "source": [ "model = load_model(\"iJO1366\")" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Models, reactions, metabolites, etc., provide return HTML when evaluated in Jupyter notebooks and can thus be easily inspected." ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
Name | \n", "iJO1366 | \n", "
Number of metabolites | \n", "1805 | \n", "
Number of reactions | \n", "2583 | \n", "
Reactions | \n", "4crsol_c --> 5drib_c --> aacald_c --> amob_c --> mththf_c --> oxam_c --> 0.012379 nh4_c + 0.000223 thf_c + 0.499149 ala__L_c + 0.000674 cu2_c + 0.001345 murein3p3p_p + 0.000223 ribflv_c + 0.000223 enter_c + 0.140101 utp_c + 0.000279 accoa_c + 0.000223 fad_c + 0.008151 colipa_e + 0.000223 gthrd_c + 0.214798 pro__L_c + 0.234232 asn__L_c + 0.000223 mql8_c + 2e-06 btn_c + 0.00118 clpn181_p + 0.000112 nadp_c + 0.000223 hemeO_c + 0.025612 dctp_c + 0.154187 glycogen_c + 0.001961 pg181_p + 7e-06 mocogdp_c + 7e-06 mococdp_c + 0.000673 murein4px4px4p_p + 0.003805 pg161_p + 0.006744 spmd_c + 0.129799 ctp_c + 0.282306 ile__L_c + 9.8e-05 succoa_c + 0.000324 zn2_c + 0.005381 murein4p4p_p + 0.005448 murein4px4p_p + 0.000223 5mthf_c + 0.000307 ni2_c + 0.595297 gly_c + 0.004952 cl_c + 0.000223 q8h2_c + 0.000223 mlthf_c + 0.024805 dttp_c + 0.004892 pg160_p + 0.234232 asp__L_c + 48.752916 h2o_c + 0.004126 so4_c + 0.007428 fe3_c + 0.006388 fe2_c + 0.000605 murein3px4p_p + 0.180021 phe__L_c + 0.255712 gln__L_c + 0.000658 mn2_c + 0.024732 pe161_p + 0.000223 chor_c + 0.000223 pydx5p_c + 0.000223 10fthf_c + 0.209121 gtp_c + 0.000223 adocbl_c + 0.012747 pe181_p + 0.002944 clpn160_p + 0.333448 lys__L_c + 0.092056 his__L_c + 0.000116 bmocogdp_c + 0.004952 ca2_c + 0.03327 ptrc_c + 0.18569 k_c + 0.031798 pe160_p + 0.000223 sheme_c + 0.000223 pheme_c + 0.002288 pg181_c + 3e-06 lipopb_c + 0.255712 glu__L_c + 2.4e-05 cobalt2_c + 2.5e-05 2fe2s_c + 0.149336 met__L_c + 0.012366 pe160_c + 0.088988 cys__L_c + 0.000223 thmpp_c + 0.001787 nad_c + 0.000168 coa_c + 0.209684 ser__L_c + 5.5e-05 udcpdp_c + 0.005707 pg160_c + 0.004439 pg161_c + 0.000223 2dmmql8_c + 0.004957 pe181_c + 0.008253 mg2_c + 0.009618 pe161_c + 0.28742 arg__L_c + 54.119975 atp_c + 0.055234 trp__L_c + 3.1e-05 malcoa_c + 0.246506 thr__L_c + 0.024805 datp_c + 4.5e-05 nadh_c + 0.025612 dgtp_c + 0.411184 val__L_c + 0.000335 nadph_c + 0.00229 clpn161_p + 0.000248 4fe4s_c + 0.133993 tyr__L_c + 0.437778 leu__L_c + 0.000223 amet_c + 7e-06 mobd_c --> 0.749831 ppi_c + 53.95 h_c + 53.95 adp_c + 53.945874 pi_c 0.000691 mn2_c + 0.000223 pydx5p_c + 0.006715 fe2_c + 0.513689 ala__L_c + 0.027017 dctp_c + 0.137896 tyr__L_c + 0.000223 ribflv_c + 0.144104 utp_c + 0.094738 his__L_c + 0.215096 gtp_c + 0.000223 fad_c + 0.000122 bmocogdp_c + 0.423162 val__L_c + 0.26316 glu__L_c + 2.5e-05 cobalt2_c + 0.09158 cys__L_c + 7e-06 mobd_c + 2e-06 btn_c + 0.195193 k_c + 0.045946 pe160_p + 0.241055 asn__L_c + 0.000223 sheme_c + 0.00026 4fe4s_c + 0.013013 nh4_c + 0.005205 ca2_c + 2.6e-05 2fe2s_c + 0.000447 nadp_c + 0.253687 thr__L_c + 0.133508 ctp_c + 0.001831 nad_c + 0.056843 trp__L_c + 0.215792 ser__L_c + 0.013894 murein5px4p_p + 0.000709 cu2_c + 0.343161 lys__L_c + 0.153686 met__L_c + 0.000576 coa_c + 0.019456 kdo2lipid4_e + 0.290529 ile__L_c + 0.008675 mg2_c + 54.124831 atp_c + 0.054154 pe161_c + 0.000223 2ohph_c + 0.000223 thmpp_c + 0.000223 thf_c + 5.5e-05 udcpdp_c + 0.000323 ni2_c + 0.612638 gly_c + 0.005205 cl_c + 0.000223 mlthf_c + 0.026166 dttp_c + 0.026166 datp_c + 0.241055 asp__L_c + 0.26316 gln__L_c + 0.004338 so4_c + 0.000223 10fthf_c + 0.027017 dgtp_c + 0.007808 fe3_c + 48.601527 h2o_c + 0.000341 zn2_c + 0.000223 pheme_c + 0.185265 phe__L_c + 0.017868 pe160_c + 0.221055 pro__L_c + 0.295792 arg__L_c + 0.02106 pe161_p + 0.450531 leu__L_c + 0.000223 amet_c --> 0.773903 ppi_c + 53.945662 pi_c + 53.95 h_c + 53.95 adp_c 12ppd__R_e --> 12ppd__S_e --> 14glucan_e --> 15dap_e --> 23camp_e --> 23ccmp_e --> 23cgmp_e --> 23cump_e --> 23dappa_e --> 26dap__M_e --> 2ddglcn_e --> 34dhpac_e --> 3amp_e --> 3cmp_e --> 3gmp_e --> 3hcinnm_e --> 3hpp_e --> 3hpppn_e --> 3ump_e --> 4abut_e --> 4hoxpacd_e --> 5dglcn_e --> 5mtr_e --> LalaDglu_e --> LalaDgluMdap_e --> LalaDgluMdapDala_e --> LalaLglu_e --> ac_e --> acac_e --> acald_e --> acgal_e --> acgal1p_e --> acgam_e --> acgam1p_e --> acmana_e --> acmum_e --> acnam_e --> acolipa_e --> acser_e --> ade_e --> adn_e --> adocbl_e --> ag_e --> agm_e --> akg_e --> ala_B_e --> ala__D_e --> ala__L_e --> alaala_e --> all__D_e --> alltn_e --> amp_e --> anhgm_e --> arab__L_e --> arbt_e --> arbtn_e --> arbtn_fe3_e --> arg__L_e --> ascb__L_e --> asn__L_e --> aso3_e --> asp__L_e --> btn_e --> but_e --> butso3_e --> ca2_e <=> cbi_e --> cbl1_e <=> cd2_e --> cgly_e --> chol_e --> chtbs_e --> cit_e --> cl_e <=> cm_e --> cmp_e --> co2_e <=> cobalt2_e <=> colipa_e --> colipap_e --> cpgn_e --> cpgn_un_e --> crn_e --> crn__D_e --> csn_e --> cu_e --> cu2_e <=> cyan_e --> cynt_e --> cys__D_e --> cys__L_e --> cytd_e --> dad_2_e --> damp_e --> dca_e --> dcmp_e --> dcyt_e --> ddca_e --> dgmp_e --> dgsn_e --> dha_e --> dimp_e --> din_e --> dms_e --> dmso_e --> dopa_e --> doxrbcn_e --> dtmp_e --> dump_e --> duri_e --> eca4colipa_e --> enlipa_e --> enter_e --> etha_e --> ethso3_e --> etoh_e --> f6p_e --> fald_e --> fe2_e <=> fe3_e <=> fe3dcit_e --> fe3dhbzs_e --> fe3hox_e --> fe3hox_un_e --> fecrm_e --> fecrm_un_e --> feenter_e --> feoxam_e --> feoxam_un_e --> for_e --> fru_e --> frulys_e --> fruur_e --> fuc__L_e --> fum_e --> fusa_e --> g1p_e --> g3pc_e --> g3pe_e --> g3pg_e --> g3pi_e --> g3ps_e --> g6p_e --> gal_e --> gal_bD_e --> gal1p_e --> galct__D_e --> galctn__D_e --> galctn__L_e --> galt_e --> galur_e --> gam_e --> gam6p_e --> gbbtn_e --> gdp_e --> glc__D_e <=> glcn_e --> glcr_e --> glcur_e --> glcur1p_e --> gln__L_e --> glu__L_e --> gly_e --> glyald_e --> glyb_e --> glyc_e --> glyc__R_e --> glyc2p_e --> glyc3p_e --> glyclt_e --> gmp_e --> gsn_e --> gthox_e --> gthrd_e --> gtp_e --> gua_e --> h_e <=> h2_e --> h2o_e <=> h2o2_e --> h2s_e --> hacolipa_e --> halipa_e --> hdca_e --> hdcea_e --> hg2_e --> his__L_e --> hom__L_e --> hxa_e --> hxan_e --> idon__L_e --> ile__L_e --> imp_e --> indole_e --> inost_e --> ins_e --> isetac_e --> k_e <=> kdo2lipid4_e --> lac__D_e --> lac__L_e --> lcts_e --> leu__L_e --> lipa_e --> lipa_cold_e --> lipoate_e --> lys__L_e --> lyx__L_e --> mal__D_e --> mal__L_e --> malt_e --> malthx_e --> maltpt_e --> malttr_e --> maltttr_e --> man_e --> man6p_e --> manglyc_e --> melib_e --> meoh_e --> met__D_e --> met__L_e --> metsox_R__L_e --> metsox_S__L_e --> mg2_e <=> mincyc_e --> minohp_e --> mmet_e --> mn2_e <=> mnl_e --> mobd_e <=> mso3_e --> n2o_e --> na1_e <=> nac_e --> nh4_e <=> ni2_e <=> nmn_e --> no_e --> no2_e --> no3_e --> novbcn_e --> o16a4colipa_e --> o2_e <=> o2s_e --> ocdca_e --> ocdcea_e --> octa_e --> orn_e --> orot_e --> pacald_e --> peamn_e --> phe__L_e --> pheme_e --> pi_e <=> pnto__R_e --> ppa_e --> ppal_e --> pppn_e --> ppt_e --> pro__L_e --> progly_e --> psclys_e --> pser__L_e --> ptrc_e --> pydam_e --> pydx_e --> pydxn_e --> pyr_e --> quin_e --> r5p_e --> rfamp_e --> rib__D_e --> rmn_e --> sbt__D_e --> sel_e <=> ser__D_e --> ser__L_e --> skm_e --> slnt_e <=> so2_e --> so3_e --> so4_e <=> spmd_e --> succ_e --> sucr_e --> sulfac_e --> tartr__D_e --> tartr__L_e --> taur_e --> tcynt_e --> thm_e --> thr__L_e --> thrp_e --> thym_e --> thymd_e --> tma_e --> tmao_e --> tre_e --> trp__L_e --> tsul_e --> ttdca_e --> ttdcea_e --> ttrcyc_e --> tungs_e <=> tym_e --> tyr__L_e --> tyrp_e --> uacgam_e --> udpacgal_e --> udpg_e --> udpgal_e --> udpglcur_e --> ump_e --> ura_e --> urea_e --> uri_e --> val__L_e --> xan_e --> xmp_e --> xtsn_e --> xyl__D_e --> xylu__L_e --> zn2_e <=> 12dgr120_p --> 12dgr120_c 12dgr140_p --> 12dgr140_c 12dgr141_p --> 12dgr141_c 12dgr160_p --> 12dgr160_c 12dgr161_p --> 12dgr161_c 12dgr180_p --> 12dgr180_c 12dgr181_p --> 12dgr181_c 12ppd__R_e <=> 12ppd__R_p 12ppd__R_p <=> 12ppd__R_c 12ppd__S_e <=> 12ppd__S_p 12ppd__S_p <=> 12ppd__S_c 14glucan_p + atp_c + h2o_c --> 14glucan_c + pi_c + h_c + adp_c 14glucan_e --> 14glucan_p 23camp_e <=> 23camp_p 23ccmp_e <=> 23ccmp_p 23cgmp_e <=> 23cgmp_p 23cump_e <=> 23cump_p 23dappa_p + h_p --> 23dappa_c + h_c 23dappa_e <=> 23dappa_p 23cump_p + h2o_p --> h_p + 3ump_p 23ccmp_p + h2o_p --> 3cmp_p + h_p h2o_p + 23camp_p --> h_p + 3amp_p 23cgmp_p + h2o_p --> h_p + 3gmp_p 26dap__M_e <=> 26dap__M_p 2ddecg3p_p --> 2ddecg3p_c 2tdecg3p_p --> 2tdecg3p_c 2tdec7eg3p_p --> 2tdec7eg3p_c 2hdecg3p_p --> 2hdecg3p_c 2hdec9eg3p_p --> 2hdec9eg3p_c 2odecg3p_p --> 2odecg3p_c 2odec11eg3p_p --> 2odec11eg3p_c 2agpe120_p --> 2agpe120_c 2agpe140_p --> 2agpe140_c 2agpe141_p --> 2agpe141_c 2agpe160_p --> 2agpe160_c 2agpe161_p --> 2agpe161_c 2agpe180_p --> 2agpe180_c 2agpe181_p --> 2agpe181_c ddca_c + 2agpe120_c + atp_c --> ppi_c + pe120_c + amp_c 2agpe140_c + ttdca_c + atp_c --> pe140_c + ppi_c + amp_c ttdcea_c + 2agpe141_c + atp_c --> pe141_c + ppi_c + amp_c hdca_c + 2agpe160_c + atp_c --> pe160_c + ppi_c + amp_c hdcea_c + 2agpe161_c + atp_c --> ppi_c + pe161_c + amp_c 2agpe180_c + ocdca_c + atp_c --> ppi_c + pe180_c + amp_c 2agpe181_c + ocdcea_c + atp_c --> ppi_c + pe181_c + amp_c 2agpg120_p --> 2agpg120_c 2agpg140_p --> 2agpg140_c 2agpg141_p --> 2agpg141_c 2agpg160_p --> 2agpg160_c 2agpg161_p --> 2agpg161_c 2agpg180_p --> 2agpg180_c 2agpg181_p --> 2agpg181_c ddca_c + 2agpg120_c + atp_c --> pg120_c + ppi_c + amp_c 2agpg140_c + ttdca_c + atp_c --> ppi_c + amp_c + pg140_c ttdcea_c + 2agpg141_c + atp_c --> ppi_c + pg141_c + amp_c hdca_c + 2agpg160_c + atp_c --> pg160_c + ppi_c + amp_c 2agpg161_c + hdcea_c + atp_c --> pg161_c + ppi_c + amp_c ocdca_c + 2agpg180_c + atp_c --> pg180_c + ppi_c + amp_c 2agpg181_c + ocdcea_c + atp_c --> ppi_c + pg181_c + amp_c 2dhguln_c + nadh_c + h_c --> glcn_c + nad_c 2dhguln_c + nadph_c + h_c --> glcn_c + nadp_c 2dhguln_c + nadh_c + h_c --> nad_c + idon__L_c 2dhguln_c + nadph_c + h_c --> nadp_c + idon__L_c 2mahmp_c + h2o_c --> pi_c + 4ampm_c + h_c 34dhpac_e <=> 34dhpac_p 3amac_c + h2o_c + h_c --> nh4_c + msa_c 3amp_e <=> 3amp_p 3cmp_e <=> 3cmp_p 3gmp_e <=> 3gmp_p 3hdecACP_c --> h2o_c + tdec2eACP_c 3hddecACP_c --> h2o_c + tddec2eACP_c 3hcddec5eACP_c --> t3c5ddeceACP_c + h2o_c 3hmrsACP_c --> h2o_c + tmrs2eACP_c 3hcmrs7eACP_c --> t3c7mrseACP_c + h2o_c 3hpalmACP_c --> h2o_c + tpalm2eACP_c 3hcpalm9eACP_c --> h2o_c + t3c9palmeACP_c 3hoctaACP_c --> toctd2eACP_c + h2o_c 3hcvac11eACP_c --> t3c11vaceACP_c + h2o_c 3haACP_c --> but2eACP_c + h2o_c 3hhexACP_c --> thex2eACP_c + h2o_c 3hoctACP_c --> toct2eACP_c + h2o_c 3hcinnm_c + h_c + nadh_c + o2_c --> dhcinnm_c + nad_c + h2o_c 3hpppn_c + nadh_c + h_c + o2_c --> nad_c + dhpppn_c + h2o_c 3hpp_e <=> 3hpp_p 3hpp_c + h_c --> 3hpp_p + h_p 3dhguln_c + atp_c --> adp_c + 3dhgulnp_c + h_c 3ump_p + h2o_p --> pi_p + uri_p 3cmp_p + h2o_p --> cytd_p + pi_p h2o_p + 3amp_p --> pi_p + adn_p h2o_p + 3gmp_p --> gsn_p + pi_p 3odecACP_c + nadph_c + h_c <=> nadp_c + 3hdecACP_c 3oddecACP_c + h_c + nadph_c <=> nadp_c + 3hddecACP_c nadph_c + 3ocddec5eACP_c + h_c --> nadp_c + 3hcddec5eACP_c nadph_c + 3omrsACP_c + h_c <=> 3hmrsACP_c + nadp_c 3ocmrs7eACP_c + nadph_c + h_c --> 3hcmrs7eACP_c + nadp_c 3opalmACP_c + nadph_c + h_c <=> nadp_c + 3hpalmACP_c nadph_c + h_c + 3ocpalm9eACP_c --> nadp_c + 3hcpalm9eACP_c nadph_c + 3ooctdACP_c + h_c <=> nadp_c + 3hoctaACP_c nadph_c + 3ocvac11eACP_c + h_c --> 3hcvac11eACP_c + nadp_c actACP_c + nadph_c + h_c <=> nadp_c + 3haACP_c nadph_c + h_c + 3ohexACP_c <=> nadp_c + 3hhexACP_c nadph_c + 3ooctACP_c + h_c <=> nadp_c + 3hoctACP_c ocACP_c + h_c + malACP_c --> co2_c + 3odecACP_c + ACP_c h_c + dcaACP_c + malACP_c --> co2_c + 3oddecACP_c + ACP_c h_c + malACP_c + cdec3eACP_c --> co2_c + ACP_c + 3ocddec5eACP_c ddcaACP_c + h_c + malACP_c --> 3omrsACP_c + co2_c + ACP_c cddec5eACP_c + h_c + malACP_c --> co2_c + 3ocmrs7eACP_c + ACP_c malACP_c + myrsACP_c + h_c --> co2_c + 3opalmACP_c + ACP_c tdeACP_c + h_c + malACP_c --> co2_c + ACP_c + 3ocpalm9eACP_c palmACP_c + h_c + malACP_c --> co2_c + 3ooctdACP_c + ACP_c h_c + hdeACP_c + malACP_c --> co2_c + ACP_c + 3ocvac11eACP_c h_c + butACP_c + malACP_c --> 3ohexACP_c + co2_c + ACP_c h_c + hexACP_c + malACP_c --> co2_c + ACP_c + 3ooctACP_c coa_c + oxadpcoa_c --> accoa_c + succoa_c LalaDgluMdap_p + h2o_c + atp_c --> h_c + pi_c + LalaDgluMdap_c + adp_c LalaDgluMdap_e <=> LalaDgluMdap_p 3ump_e <=> 3ump_p dopa_p + h2o_p + o2_p --> nh4_p + 34dhpac_p + h2o2_p 4hoxpacd_e <=> 4hoxpacd_p h2o_c + phthr_c --> 4hthr_c + pi_c h2o_c + LalaDgluMdapDala_c --> ala__D_c + LalaDgluMdap_c LalaDgluMdapDala_p + h2o_p --> LalaDgluMdap_p + ala__D_p LalaDgluMdapDala_p + atp_c + h2o_c --> LalaDgluMdapDala_c + pi_c + h_c + adp_c LalaDgluMdapDala_e <=> LalaDgluMdapDala_p nadph_c + 5dglcn_c + h_c <=> glcn_c + nadp_c 5dglcn_p + h_p <=> 5dglcn_c + h_c 5dglcn_e <=> 5dglcn_p dad_5_c + h2o_c --> 5drib_c + ade_c 5mtr_e <=> 5mtr_p 5mtr_c + h_c --> h_p + 5mtr_p ru5p__D_c <=> ara5p_c ACP_c + ttdca_c + atp_c --> ppi_c + myrsACP_c + amp_c ttdcea_c + ACP_c + atp_c --> tdeACP_c + ppi_c + amp_c hdca_c + ACP_c + atp_c --> palmACP_c + ppi_c + amp_c hdcea_c + ACP_c + atp_c --> ppi_c + hdeACP_c + amp_c ACP_c + ocdcea_c + atp_c --> ppi_c + octeACP_c + amp_c ACP_c + ocdca_c + atp_c --> ocdcaACP_c + ppi_c + amp_c ddca_c + ACP_c + atp_c --> ddcaACP_c + ppi_c + amp_c ACP_c + dca_c + atp_c --> ppi_c + dcaACP_c + amp_c ACP_c + atp_c + octa_c --> ocACP_c + ppi_c + amp_c aact_c + o2_c + h2o_c --> mthgxl_c + h2o2_c + nh4_c unagamu_c + dtdp4aaddg_c --> unagamuf_c + dtdp_c + h_c 14glucan_c --> malthx_c 14glucan_p --> malthx_p arbt6p_c + h2o_c --> g6p_c + hqn_c 4abut_c + akg_c --> glu__L_c + sucsal_c nad_c + 4abutn_c + h2o_c --> 4abut_c + 2.0 h_c + nadh_c 4abut_p + h_p --> 4abut_c + h_c 4abut_e <=> 4abut_p accoa_c + acac_c --> ac_c + aacoa_c 2.0 accoa_c <=> coa_c + aacoa_c accoa_c + btcoa_c <=> coa_c + 3ohcoa_c hxcoa_c + accoa_c <=> coa_c + 3oocoa_c accoa_c + occoa_c <=> 3odcoa_c + coa_c dcacoa_c + accoa_c <=> coa_c + 3oddcoa_c accoa_c + ddcacoa_c <=> coa_c + 3otdcoa_c tdcoa_c + accoa_c <=> 3ohdcoa_c + coa_c 3oodcoa_c + coa_c <=> accoa_c + pmtcoa_c h_p + acac_p <=> acac_c + h_c acac_e <=> acac_p acald_c + coa_c + nad_c <=> h_c + nadh_c + accoa_c acald_e <=> acald_p acald_p <=> acald_c anth_c + accoa_c --> coa_c + acanth_c adocbip_c + gtp_c + h_c --> ppi_c + agdpcbi_c hco3_c + accoa_c + atp_c --> malcoa_c + h_c + pi_c + adp_c ppa_c + coa_c + atp_c --> ppcoa_c + pi_c + adp_c acgal1p_p + h2o_p --> acgal_p + pi_p acgal1p_e <=> acgal1p_p acgal_e <=> acgal_p acgam1p_p + h2o_p --> pi_p + acgam_p acgam1p_e <=> acgam1p_p atp_c + acgam_c --> acgam6p_c + adp_c + h_c udcpp_c + uacgam_c --> ump_c + unaga_c pep_c + acgam_p --> acgam6p_c + pyr_c acgam_e <=> acgam_p acglu_c + atp_c --> acg5p_c + adp_c glu__L_c + accoa_c --> coa_c + acglu_c + h_c 2obut_c + pyr_c + h_c --> 2ahbut_c + co2_c ac_c + atp_c <=> actp_c + adp_c 2.0 pyr_c + h_c --> co2_c + alac__S_c h2o_c + acmum6p_c --> acgam6p_c + lac__D_c uacmamu_c + unaga_c --> unagamu_c + udp_c + h_c pep_c + acmana_p --> acmanap_c + pyr_c acmana_e <=> acmana_p pep_c + acmum_p --> pyr_c + acmum6p_c acmum_e --> acmum_p h_p + acnam_p --> acnam_c + h_c acnam_e <=> acnam_p acnam_c --> acmana_c + pyr_c fad_c + btcoa_c <=> b2coa_c + fadh2_c hxcoa_c + fad_c <=> hx2coa_c + fadh2_c fad_c + occoa_c <=> fadh2_c + oc2coa_c dcacoa_c + fad_c <=> dc2coa_c + fadh2_c fad_c + ddcacoa_c <=> fadh2_c + dd2coa_c tdcoa_c + fad_c <=> fadh2_c + td2coa_c fad_c + pmtcoa_c <=> hdd2coa_c + fadh2_c stcoa_c + fad_c <=> fadh2_c + od2coa_c ACP_c + accoa_c <=> coa_c + acACP_c acorn_c + h2o_c --> orn_c + ac_c acolipa_p + atp_c + h2o_c --> acolipa_e + h_c + pi_c + adp_c acon_T_c <=> acon_C_c acon_T_c + amet_c --> ahcys_c + aconm_c cit_c <=> acon_C_c + h2o_c acon_C_c + h2o_c <=> icit_c akg_c + acorn_c <=> acg5sa_c + glu__L_c pi_c + ddcaACP_c + h_c --> ACP_c + ddcap_c myrsACP_c + pi_c + h_c --> ACP_c + ttdcap_c pi_c + tdeACP_c + h_c --> ACP_c + ttdceap_c palmACP_c + pi_c + h_c --> ACP_c + hdcap_c pi_c + h_c + hdeACP_c --> ACP_c + hdceap_c pi_c + ocdcaACP_c + h_c --> ACP_c + ocdcap_c pi_c + octeACP_c + h_c --> ocdceap_c + ACP_c apoACP_c + coa_c --> pap_c + ACP_c + h_c coa_c + ac_c + atp_c --> ppi_c + accoa_c + amp_c acser_e <=> acser_p acser_c --> acser_p h_p + ac_p <=> ac_c + h_c ac_p + na1_p --> ac_c + na1_c ac_e <=> ac_p adn_c + h_c + h2o_c --> ins_c + nh4_c 4adcho_c --> pyr_c + 4abz_c + h_c chor_c + gln__L_c --> 4adcho_c + glu__L_c ade_c + h2o_c + h_c --> hxan_c + nh4_c h_p + ade_p <=> ade_c + h_c ade_e <=> ade_p amp_c + atp_c <=> 2.0 adp_c amp_c + gtp_c <=> gdp_c + adp_c itp_c + amp_c <=> idp_c + adp_c amet_c + h_c --> ametam_c + co2_c atp_c --> ppi_c + camp_c adn_c + atp_c --> amp_c + adp_c + h_c adn_c + h2o_c --> rib__D_c + ade_c h_p + adn_p --> adn_c + h_c h_p + adn_p <=> adn_c + h_c adn_e <=> adn_p adocbi_c + atp_c --> adp_c + adocbip_c + h_c rdmbzi_c + agdpcbi_c --> adocbl_c + gmp_c + h_c adocbl_p + atp_c + h2o_c --> h_c + adocbl_c + pi_c + adp_c adocbl_e + h_p --> adocbl_p + h_c adprib_c + h2o_c --> amp_c + 2.0 h_c + r5p_c ade_c + prpp_c --> ppi_c + amp_c aps_c + atp_c --> paps_c + adp_c + h_c dcamp_c <=> fum_c + amp_c 25aics_c <=> fum_c + aicar_c imp_c + asp__L_c + gtp_c --> gdp_c + 2.0 h_c + pi_c + dcamp_c acgam6p_c + h2o_c --> gam6p_c + ac_c anhgm3p_c + h2o_c --> anhgm_c + LalaDgluMdap_c anhgm3p_p + h2o_p --> LalaDgluMdap_p + anhgm_p anhgm3p_c + h2o_c --> anhm3p_c + acgam_c h_p + anhgm3p_p --> anhgm3p_c + h_c h2o_c + anhgm4p_c --> anhgm_c + LalaDgluMdapDala_c h2o_p + anhgm4p_p --> LalaDgluMdapDala_p + anhgm_p h2o_c + anhgm4p_c --> anhgm3p_c + ala__D_c h2o_p + anhgm4p_p --> anhgm3p_p + ala__D_p anhgm4p_c + h2o_c --> anhm4p_c + acgam_c h_p + anhgm4p_p --> anhgm4p_c + h_c anhgm_c + h2o_c --> anhm_c + acgam_c adphep_DD_c --> adphep_LD_c agm_c + h2o_c --> urea_c + ptrc_c h_p + anhgm_p --> anhgm_c + h_c agm_e <=> agm_p ddcaACP_c + 1ddecg3p_c --> ACP_c + pa120_c myrsACP_c + 1tdecg3p_c --> ACP_c + pa140_c 1tdec7eg3p_c + tdeACP_c --> ACP_c + pa141_c palmACP_c + 1hdecg3p_c --> pa160_c + ACP_c hdeACP_c + 1hdec9eg3p_c --> ACP_c + pa161_c ocdcaACP_c + 1odecg3p_c --> pa180_c + ACP_c 1odec11eg3p_c + octeACP_c --> pa181_c + ACP_c acg5sa_c + pi_c + nadp_c <=> nadph_c + acg5p_c + h_c h_e + ag_c --> ag_e + h_c ahcys_c + h2o_c --> rhcys_c + ade_c 10fthf_c + aicar_c <=> fprica_c + thf_c air_c + hco3_c + atp_c --> h_c + pi_c + 5caiz_c + adp_c 5aizc_c <=> 5caiz_c akg_c + coa_c + nad_c --> co2_c + nadh_c + succoa_c h_p + akg_p <=> akg_c + h_c akg_e <=> akg_p alaala_c + h2o_c --> 2.0 ala__D_c alaala_p + atp_c + h2o_c --> h_c + pi_c + alaala_c + adp_c 2.0 ala__D_c + atp_c <=> h_c + pi_c + alaala_c + adp_c alaala_e <=> alaala_p LalaDglu_c <=> LalaLglu_c ala__L_c <=> ala__D_c pydx5p_c + ala__D_c --> pyr_c + pyam5p_c ala__L_c + akg_c <=> pyr_c + glu__L_c ala__L_c + pydx5p_c --> pyr_c + pyam5p_c trnaala_c + ala__L_c + atp_c --> ppi_c + amp_c + alatrna_c ala__L_p + atp_c + h2o_c --> h_c + ala__L_c + pi_c + adp_c ala__L_p + h_p --> ala__L_c + h_c ala__L_p + h_p <=> ala__L_c + h_c ala__L_p + na1_p --> ala__L_c + na1_c ala__L_e <=> ala__L_p nadh_c + glyald_c + h_c <=> nad_c + glyc_c etoh_c + nad_c <=> nadh_c + acald_c + h_c nad_c + pacald_c + h2o_c <=> pac_c + 2.0 h_c + nadh_c acald_c + nad_c + h2o_c --> nadh_c + 2.0 h_c + ac_c acald_c + nadp_c + h2o_c --> nadph_c + 2.0 h_c + ac_c nadp_c + ppal_c + h2o_c --> 2.0 h_c + ppa_c + nadph_c nad_c + btal_c + h2o_c --> but_c + 2.0 h_c + nadh_c all__D_c + atp_c --> adp_c + all6p_c + h_c all6p_c <=> allul6p_c alltt_c + 2.0 h_c + 2.0 h2o_c --> co2_c + urdglyc_c + 2.0 nh4_c alltn_c + h2o_c --> alltt_c + h_c h_p + alltn_p <=> alltn_c + h_c alltn_e <=> alltn_p allul6p_c <=> f6p_c all__D_p + atp_c + h2o_c --> all__D_c + h_c + pi_c + adp_c all__D_e <=> all__D_p pe160_p + alpp_p --> lpp_p + 2agpe160_p alpp_p + pg160_p --> lpp_p + 2agpg160_p mthgxl_c + nadph_c + h_c --> acetol_c + nadp_c h_c + acetol_c + nadh_c --> nad_c + 12ppd__R_c altrn_c --> 2ddglcn_c + h2o_c anhm3p_c + h2o_c --> LalaDgluMdap_c + anhm_c anhm4p_c + h2o_c --> anhm_c + LalaDgluMdapDala_c anhm4p_c + h2o_c --> anhm3p_c + ala__D_c malttr_c + malt_c --> glc__D_c + maltttr_c malt_c + maltttr_c --> glc__D_c + maltpt_c malt_c + maltpt_c --> glc__D_c + malthx_c malt_c + malthx_c --> glc__D_c + malthp_c acmanap_c <=> acgam6p_c acmana_c + atp_c --> acmanap_c + adp_c + h_c 8aonn_c + amet_c <=> amob_c + dann_c 2dmmql8_c + amet_c --> ahcys_c + mql8_c + h_c air_c + nad_c + h2o_c --> nadh_c + 2.0 for_c + 3.0 h_c + 4ampm_c amp_c + h2o_c --> ade_c + r5p_c h2o_c + cgly_c --> gly_c + cys__L_c h2o_c + progly_c --> pro__L_c + gly_c amp_e <=> amp_p anhgm_e <=> anhgm_p h2o_c + anhm_c + atp_c --> adp_c + h_c + acmum6p_c anth_c + prpp_c --> pran_c + ppi_c chor_c + gln__L_c --> anth_c + h_c + pyr_c + glu__L_c 2aobut_c + h_c --> aact_c + co2_c ala__L_c + pimACP_c --> ACP_c + 8aonn_c + co2_c ap4a_c + h2o_c --> 2.0 h_c + 2.0 adp_c 2.0 atp_c + h_c --> ap4a_c + ppi_c ap5a_c + h2o_c --> adp_c + atp_c + 2.0 h_c ametam_c + 15dap_c --> 5mta_c + na15dap_c + h_c glyc3p_c + ddcap_c --> pi_c + 1ddecg3p_c + h_c glyc3p_c + ttdcap_c --> pi_c + 1tdecg3p_c + h_c glyc3p_c + ttdceap_c --> 1tdec7eg3p_c + pi_c + h_c glyc3p_c + hdcap_c --> 1hdecg3p_c + pi_c + h_c glyc3p_c + hdceap_c --> h_c + 1hdec9eg3p_c + pi_c glyc3p_c + ocdcap_c --> pi_c + 1odecg3p_c + h_c ocdceap_c + glyc3p_c --> 1odec11eg3p_c + pi_c + h_c h2o_c + ddcap_c --> pi_c + ddca_c + 2.0 h_c h2o_c + ttdcap_c --> pi_c + ttdca_c + 2.0 h_c ttdceap_c + h2o_c --> ttdcea_c + pi_c + 2.0 h_c hdcap_c + h2o_c --> pi_c + 2.0 h_c + hdca_c h2o_c + hdceap_c --> pi_c + 2.0 h_c + hdcea_c h2o_c + ocdcap_c --> ocdca_c + pi_c + 2.0 h_c ocdceap_c + h2o_c --> pi_c + ocdcea_c + 2.0 h_c h_c + nadh_c + aact_c <=> nad_c + appl_c nadph_c + 5apru_c + h_c --> 5aprbu_c + nadp_c arab__L_c <=> rbl__L_c 2.0 arbtn_fe3_c + fadh2_c --> 2.0 arbtn_c + 2.0 h_c + fad_c + 2.0 fe2_c 2.0 arbtn_fe3_c + fmnh2_c --> 2.0 arbtn_c + 2.0 h_c + 2.0 fe2_c + fmn_c 2.0 arbtn_fe3_c + rbflvrd_c --> 2.0 arbtn_c + 2.0 h_c + 2.0 fe2_c + ribflv_c arbtn_fe3_p + atp_c + h2o_c --> arbtn_fe3_c + h_c + pi_c + adp_c arbtn_e + fe3_e --> arbtn_fe3_e arbtn_p + h_p --> arbtn_e + h_c h_p + arbtn_fe3_e --> arbtn_fe3_p + h_c arbtn_c + h_p --> arbtn_p + h_c pep_c + arbt_p --> pyr_c + arbt6p_c arbt_e --> arbt_p arab__L_p + atp_c + h2o_c --> h_c + pi_c + arab__L_c + adp_c arab__L_p + h_p <=> arab__L_c + h_c arab__L_c + h_p --> arab__L_p + h_c arab__L_e <=> arab__L_p agm_c + arg__L_p <=> arg__L_c + agm_p arg__L_c + h_c --> agm_c + co2_c h_p + arg__L_p --> agm_p + co2_p orn_c + arg__L_p <=> arg__L_c + orn_p argsuc_c <=> arg__L_c + fum_c asp__L_c + atp_c + citr__L_c --> argsuc_c + ppi_c + h_c + amp_c arg__L_c + trnaarg_c + atp_c --> ppi_c + argtrna_c + amp_c arg__L_p + atp_c + h2o_c --> arg__L_c + pi_c + h_c + adp_c arg__L_c + h_p --> h_c + arg__L_p arg__L_e <=> arg__L_p pi_c + aspsa_c + nadp_c <=> nadph_c + h_c + 4pasp_c h2o_c + ascb6p_c --> h_c + 3dhgulnp_c ascb__L_p + pep_c --> pyr_c + ascb6p_c ascb__L_e <=> ascb__L_p asn__L_c + h2o_c --> nh4_c + asp__L_c asn__L_p + h2o_p --> nh4_p + asp__L_p atp_c + asp__L_c + h2o_c + gln__L_c --> asn__L_c + h_c + ppi_c + glu__L_c + amp_c asp__L_c + nh4_c + atp_c --> asn__L_c + ppi_c + h_c + amp_c asn__L_c + trnaasn_c + atp_c --> ppi_c + asntrna_c + amp_c asn__L_p + atp_c + h2o_c --> asn__L_c + h_c + adp_c + pi_c h_p + asn__L_p <=> asn__L_c + h_c asn__L_e <=> asn__L_p aso3_c + atp_c + h2o_c --> h_c + aso3_p + pi_c + adp_c aso3_e <=> aso3_p asp__L_c + h_c --> co2_c + ala_B_c cbp_c + asp__L_c --> pi_c + cbasp_c + h_c atp_c + asp__L_c <=> 4pasp_c + adp_c q8_c + asp__L_c --> iasp_c + h_c + q8h2_c mqn8_c + asp__L_c --> mql8_c + iasp_c + h_c fum_c + asp__L_c --> iasp_c + succ_c + h_c o2_c + asp__L_c --> h2o2_c + iasp_c + h_c asp__L_c --> nh4_c + fum_c akg_c + asp__L_c <=> oaa_c + glu__L_c asp__L_c + trnaasp_c + atp_c --> asptrna_c + ppi_c + amp_c asp__L_p + atp_c + h2o_c --> asp__L_c + h_c + pi_c + adp_c 2.0 h_p + asp__L_p --> asp__L_c + 2.0 h_c 3.0 h_p + asp__L_p --> asp__L_c + 3.0 h_c h_p + asp__L_p --> asp__L_c + h_c h_p + asp__L_p <=> asp__L_c + h_c asp__L_e <=> asp__L_p 2.0 gthrd_c + aso4_c --> aso3_c + gthox_c + h2o_c arg__L_c + succoa_c --> sucarg_c + coa_c + h_c nadp_c + athr__L_c <=> nadph_c + 2aobut_c + h_c h2o_c + atp_c + h_c --> itp_c + nh4_c h2o_c + atp_c --> pi_c + adp_c + h_c prpp_c + atp_c --> ppi_c + prbatp_c pi_c + 4.0 h_p + adp_c <=> 3.0 h_c + h2o_c + atp_c ala_B_p + h_p --> ala_B_c + h_c ala_B_e <=> ala_B_p betald_c + nad_c + h2o_c --> glyb_c + 2.0 h_c + nadh_c nadp_c + betald_c + h2o_c --> nadph_c + glyb_c + 2.0 h_c mptamp_c + moco_c --> amp_c + cu2_c + bmoco_c bmoco_c + gtp_c + h_c --> ppi_c + bmoco1gdp_c gtp_c + bmoco1gdp_c + h_c --> bmocogdp_c + ppi_c pap_c + h2o_c --> pi_c + amp_c h_c + nadh_c + btnso_c --> btn_c + nad_c + h2o_c nadph_c + h_c + btnso_c --> btn_c + h2o_c + nadp_c h_p + btn_p --> btn_c + h_c btn_e <=> btn_p 2fe2s_c + dtbt_c + amet_c --> dad_5_c + 2fe1s_c + met__L_c + h_c + btn_c but_c + accoa_c --> ac_c + btcoa_c butso3_p + atp_c + h2o_c --> h_c + butso3_c + adp_c + pi_c butso3_e <=> butso3_p but_p + h_p <=> but_c + h_c but_e <=> but_p bwco_c + gtp_c + h_c --> ppi_c + bwco1gdp_c bwco1gdp_c + gtp_c + h_c --> bwcogdp_c + ppi_c mptamp_c + wco_c --> cu2_c + bwco_c + amp_c h_p + ca2_c --> ca2_p + h_c ca2_e <=> ca2_p 15dap_c + lys__L_p + h_p --> lys__L_c + h_c + 15dap_p 2.0 h2o2_c --> o2_c + 2.0 h2o_c ca2_c + na1_p <=> ca2_p + na1_c cbi_c + atp_c + h_c <=> pppi_c + adocbi_c cbi_e + h_p --> cbi_p + h_c cbi_p + atp_c + h2o_c --> cbi_c + h_c + pi_c + adp_c cbl1_p + atp_c + h2o_c --> cbl1_c + h_c + pi_c + adp_c h_p + cbl1_e --> cbl1_p + h_c cbl1_c + atp_c + h_c <=> pppi_c + adocbl_c cbm_c + 2.0 h_c --> co2_c + nh4_c co2_c + nh4_c + atp_c <=> 2.0 h_c + cbp_c + adp_c hco3_c + h2o_c + 2.0 atp_c + gln__L_c --> 2.0 h_c + cbp_c + pi_c + glu__L_c + 2.0 adp_c cdg_c + nh4_c + atp_c --> h_c + h2o_c + preq0_c + pi_c + adp_c cd2_c + atp_c + h2o_c --> cd2_p + h_c + pi_c + adp_c h_p + cd2_c --> cd2_p + h_c cd2_e <=> cd2_p cd2_p --> cd2_c h2o_c + cdpdddecg_c --> cmp_c + pa120_c + 2.0 h_c cdpdtdecg_c + h2o_c --> pa140_c + cmp_c + 2.0 h_c h2o_c + cdpdtdec7eg_c --> 2.0 h_c + pa141_c + cmp_c h2o_c + cdpdhdecg_c --> pa160_c + cmp_c + 2.0 h_c h2o_c + cdpdhdec9eg_c --> 2.0 h_c + cmp_c + pa161_c cdpdodecg_c + h2o_c --> pa180_c + cmp_c + 2.0 h_c h2o_c + cdpdodec11eg_c --> pa181_c + cmp_c + 2.0 h_c preq0_c + 2.0 nadph_c + 3.0 h_c --> 2.0 nadp_c + preq1_c cph4_c + h_c --> cdg_c + nh4_c 4c2me_c + atp_c --> 2p4c2me_c + adp_c + h_c 2.0 amet_c + pe161_c --> 2.0 ahcys_c + 2.0 h_c + cpe160_c 2.0 amet_c + pg161_c --> cpg160_c + 2.0 ahcys_c + 2.0 h_c pe181_c + 2.0 amet_c --> 2.0 ahcys_c + 2.0 h_c + cpe180_c pg181_c + 2.0 amet_c --> 2.0 ahcys_c + cpg180_c + 2.0 h_c h2o_c + cgly_p + atp_c --> h_c + pi_c + adp_c + cgly_c cgly_e <=> cgly_p chol_p + atp_c + h2o_c --> chol_c + h_c + pi_c + adp_c h_p + chol_p --> chol_c + h_c chol_e <=> chol_p nad_c + chol_c --> nadh_c + betald_c + h_c chor_c --> pphn_c 3psme_c --> pi_c + chor_c chor_c --> pyr_c + 4hbz_c pep_c + chtbs_p --> pyr_c + chtbs6p_c chtbs_e <=> chtbs_p cinnm_c + h_c + nadh_c + o2_c --> cenchddd_c + nad_c cit_c --> oaa_c + ac_c h_p + cit_c --> cit_p + h_c cit_p + succ_c --> succ_p + cit_c cit_e <=> cit_p lipa_cold_p + atp_c + h2o_c --> lipa_cold_e + h_c + pi_c + adp_c clpn120_p + h2o_p --> pa120_p + pg120_p + h_p h2o_p + clpn140_p --> h_p + pa140_p + pg140_p clpn141_p + h2o_p --> pg141_p + h_p + pa141_p clpn160_p + h2o_p --> pa160_p + h_p + pg160_p clpn161_p + h2o_p --> pg161_p + h_p + pa161_p clpn180_p + h2o_p --> pa180_p + h_p + pg180_p clpn181_p + h2o_p --> h_p + pa181_p + pg181_p 2.0 pg120_p <=> clpn120_p + glyc_p 2.0 pg140_p <=> glyc_p + clpn140_p 2.0 pg141_p <=> clpn141_p + glyc_p 2.0 pg160_p <=> clpn160_p + glyc_p 2.0 pg161_p <=> glyc_p + clpn161_p 2.0 pg180_p <=> clpn180_p + glyc_p 2.0 pg181_p <=> clpn181_p + glyc_p 2.0 cl_p + h_c --> 2.0 cl_c + h_p cl_e <=> cl_p cmp_c + h2o_c --> csn_c + r5p_c cmp_e <=> cmp_p cm_e <=> cm_p cm_p + h_p --> cm_e + h_c co2_e <=> co2_p co2_p <=> co2_c cobalt2_c + atp_c + h2o_c --> cobalt2_p + h_c + pi_c + adp_c h_p + cobalt2_c --> cobalt2_p + h_c cobalt2_e <=> cobalt2_p cobalt2_p --> cobalt2_c colipa_p + udcpdp_p --> colipap_p + udcpp_p colipap_p + atp_c + h2o_c --> pi_c + h_c + colipap_e + adp_c colipa_c + atp_c + h2o_c --> h_c + pi_c + adp_c + colipa_p colipa_p + h2o_c + atp_c --> h_c + pi_c + colipa_e + adp_c 2.0 cpgn_c + fadh2_c --> 2.0 h_c + fad_c + 2.0 fe2_c + 2.0 cpgn_un_c 2.0 cpgn_c + fmnh2_c --> 2.0 h_c + 2.0 fe2_c + fmn_c + 2.0 cpgn_un_c 2.0 cpgn_c + rbflvrd_c --> 2.0 h_c + 2.0 fe2_c + 2.0 cpgn_un_c + ribflv_c cpgn_un_p + h_p --> cpgn_un_e + h_c h_p + cpgn_un_c --> cpgn_un_p + h_c cpgn_p + atp_c + h2o_c --> h_c + pi_c + cpgn_c + adp_c fe3_e + cpgn_un_e --> cpgn_e cpgn_e + h_p --> cpgn_p + h_c ahdt_c + h2o_c --> acald_c + h_c + pppi_c + cph4_c gtp_c + h2o_c --> cpmp_c + ppi_c cpppg3_c + 2.0 h_c + o2_c --> 2.0 co2_c + pppg9_c + 2.0 h2o_c cpppg3_c + 2.0 amet_c --> 2.0 met__L_c + 2.0 co2_c + 2.0 dad_5_c + pppg9_c bbtcoa_c + crn_c <=> gbbtn_c + crncoa_c crn_c + coa_c + atp_c --> crncoa_c + pi_c + adp_c crncoa_c <=> crnDcoa_c ctbtcoa_c + crn_c <=> crncoa_c + ctbt_c crncoa_c <=> ctbtcoa_c + h2o_c crn__D_c + coa_c + atp_c --> crnDcoa_c + pi_c + adp_c crn__D_p + atp_c + h2o_c --> crn__D_c + h_c + pi_c + adp_c h_p + crn__D_p <=> h_c + crn__D_c crn__D_e <=> crn__D_p crn_p + atp_c + h2o_c --> crn_c + h_c + pi_c + adp_c crn_p + h_p <=> crn_c + h_c crn_p + gbbtn_c --> crn_c + gbbtn_p crn_p + crn__D_c --> crn_c + crn__D_p crn_e <=> crn_p oaa_c + accoa_c + h2o_c --> cit_c + h_c + coa_c h_c + csn_c + h2o_c --> nh4_c + ura_c csn_p + h_p --> csn_c + h_c csn_e <=> csn_p ctbt_c + coa_c + atp_c --> ctbtcoa_c + pi_c + adp_c ctbt_p + atp_c + h2o_c --> ctbt_c + h_c + pi_c + adp_c ctbt_p + h_p <=> ctbt_c + h_c tdecoa_c <=> td2coa_c hdcoa_c <=> hdd2coa_c odecoa_c <=> od2coa_c utp_c + atp_c + h2o_c + gln__L_c --> ctp_c + pi_c + glu__L_c + 2.0 h_c + adp_c 4.0 h_p + 4.0 cu_p + o2_p --> 4.0 cu2_p + 2.0 h2o_p cu_c + atp_c + h2o_c --> cu_p + h_c + pi_c + adp_c cu2_c + atp_c + h2o_c --> cu2_p + h_c + pi_c + adp_c cu2_e <=> cu2_p cu2_p --> cu2_c h_e + cu_c --> cu_e + h_c cu_e <=> cu_p tsul_c + cyan_c --> tcynt_c + so3_c + h_c cyan_p + tsul_p --> so3_p + h_p + tcynt_p cyan_e <=> cyan_p cynt_c + hco3_c + 3.0 h_c --> nh4_c + 2.0 co2_c cynt_p + h_p --> cynt_c + h_c cynt_e <=> cynt_p cys__D_c + h2o_c --> pyr_c + nh4_c + h2s_c cys__L_c + h2o_c --> pyr_c + nh4_c + h2s_c h2o_c + atp_c + cys__D_p --> h_c + pi_c + cys__D_c + adp_c cys__D_e <=> cys__D_p acser_c + h2s_c --> ac_c + cys__L_c + h_c 3sala_c + 2.0 h_c --> ala__L_c + so2_c cyst__L_c + h2o_c --> pyr_c + nh4_c + hcys__L_c cys__L_c + trnacys_c + atp_c --> cystrna_c + ppi_c + amp_c cys__L_c + atp_c + h2o_c --> cys__L_p + h_c + pi_c + adp_c cys__L_p + atp_c + h2o_c --> cys__L_c + h_c + pi_c + adp_c cys__L_e <=> cys__L_p cys__L_c --> cys__L_p 2.0 h_c + 0.5 o2_c + mql8_c --> mqn8_c + 2.0 h_p + h2o_c 2.0 h_c + 0.5 o2_c + q8h2_c --> 2.0 h_p + q8_c + h2o_c 4.0 h_c + 0.5 o2_c + q8h2_c --> 4.0 h_p + q8_c + h2o_c h2o_c + cytd_c + h_c --> nh4_c + uri_c cytd_c + h2o_c --> rib__D_c + csn_c gtp_c + cytd_c --> cmp_c + gdp_c + h_c h_p + cytd_p --> cytd_c + h_c h_p + cytd_p <=> cytd_c + h_c cytd_e <=> cytd_p atp_c + cmp_c <=> cdp_c + adp_c dcmp_c + atp_c <=> adp_c + dcdp_c lac__D_p + h_p <=> lac__D_c + h_c lac__D_e <=> lac__D_p ala__D_c + fad_c + h2o_c --> pyr_c + nh4_c + fadh2_c h_c + h2o_c + dad_2_c --> din_c + nh4_c atp_c + damp_c <=> dadp_c + adp_c dad_2_p + h_p --> dad_2_c + h_c dad_2_e <=> dad_2_p 12dgr120_c + atp_c --> pa120_c + adp_c + h_c 12dgr140_c + atp_c --> pa140_c + adp_c + h_c 12dgr141_c + atp_c --> adp_c + pa141_c + h_c 12dgr160_c + atp_c --> adp_c + pa160_c + h_c 12dgr161_c + atp_c --> h_c + adp_c + pa161_c 12dgr180_c + atp_c --> pa180_c + adp_c + h_c 12dgr181_c + atp_c --> pa181_c + adp_c + h_c h_p + ala__D_p --> ala__D_c + h_c ala__D_e <=> ala__D_p damp_e <=> damp_p 23dappa_c + h2o_c --> pyr_c + 2.0 nh4_c h_c + 26dap__M_c --> lys__L_c + co2_c 26dap_LL_c <=> 26dap__M_c h2o_c + 26dap__M_p + atp_c --> adp_c + h_c + pi_c + 26dap__M_c 15dap_e <=> 15dap_p h_c + pa120_c + ctp_c --> ppi_c + cdpdddecg_c pa140_c + h_c + ctp_c --> cdpdtdecg_c + ppi_c h_c + ctp_c + pa141_c --> ppi_c + cdpdtdec7eg_c h_c + pa160_c + ctp_c --> cdpdhdecg_c + ppi_c h_c + pa161_c + ctp_c --> ppi_c + cdpdhdec9eg_c pa180_c + h_c + ctp_c --> cdpdodecg_c + ppi_c pa181_c + ctp_c + h_c --> cdpdodec11eg_c + ppi_c h2o_c + datp_c + h_c --> nh4_c + ditp_c ru5p__D_c --> h_c + db4p_c + for_c dann_c + co2_c + atp_c --> dtbt_c + 3.0 h_c + pi_c + adp_c chtbs6p_c + h2o_c --> acgam6p_c + acgam_c dca_e <=> dca_p dcmp_e <=> dcmp_p dctp_c + h2o_c + h_c --> nh4_c + dutp_c dcyt_c + h2o_c + h_c --> duri_c + nh4_c h_p + dcyt_p --> dcyt_c + h_c dcyt_e <=> dcyt_p ddca_e --> ddca_p 2dh3dgal_c + atp_c --> adp_c + 2dh3dgal6p_c + h_c h_p + 2ddglcn_p <=> 2ddglcn_c + h_c 2ddglcn_e <=> 2ddglcn_p 2ddglcn_c + atp_c --> 2ddg6p_c + adp_c + h_c e4p_c + pep_c + h2o_c --> pi_c + 2dda7p_c 2dh3dgal6p_c <=> pyr_c + g3p_c dgmp_c + atp_c <=> dgdp_c + adp_c dgmp_e <=> dgmp_p h_p + dgsn_p --> dgsn_c + h_c dgsn_e <=> dgsn_p 23dhacoa_c + h2o_c <=> 3hadpcoa_c 23dhmb_c --> 3mob_c + h2o_c 23dhmp_c --> h2o_c + 3mop_c pep_c + dha_c --> dhap_c + pyr_c dha_e <=> dha_p dha_p <=> dha_c nad_c + 23ddhb_c <=> 23dhb_c + nadh_c + h_c 23dhb_c + atp_c + h_c --> 23dhba_c + ppi_c 23dhbzs_c + h2o_c --> 23dhb_c + ser__L_c nad_c + cenchddd_c --> dhcinnm_c + h_c + nadh_c dhcinnm_c + o2_c --> hkntd_c + h_c 23dhdp_c + nadph_c + h_c --> nadp_c + thdp_c pyr_c + aspsa_c --> 23dhdp_c + 2.0 h2o_c + h_c dhf_c + nadph_c + h_c <=> nadp_c + thf_c dhpt_c + glu__L_c + atp_c --> h_c + dhf_c + pi_c + adp_c dhmpt_c + nadph_c + h_c --> nadp_c + thmnp_c octdp_c + dhna_c + h_c --> ppi_c + co2_c + 2dmmql8_c sbzcoa_c + h_c --> h2o_c + 14dhncoa_c 14dhncoa_c + h2o_c --> coa_c + dhna_c + h_c dhnpt_c <=> gcald_c + 6hmhpt_c dhnpt_c <=> dhmpt_c q8_c + dhor__S_c --> orot_c + q8h2_c mqn8_c + dhor__S_c --> orot_c + mql8_c fum_c + dhor__S_c --> orot_c + succ_c h2o_c + dhor__S_c <=> cbasp_c + h_c nad_c + cechddd_c --> nadh_c + h_c + dhpppn_c 25drapp_c + h2o_c + h_c --> 5apru_c + nh4_c 6hmhptpp_c + 4abz_c --> dhpt_c + ppi_c dhptd_c --> mdhdhf_c dhptdn_c + nadph_c + 3.0 h_c --> thptdn_c + nadp_c nadh_c + dhptdn_c + 3.0 h_c --> thptdn_c + nad_c ahdt_c <=> dhmptp_c 2dda7p_c --> pi_c + 3dhq_c 3dhq_c --> 3dhsk_c + h2o_c dimp_e <=> dimp_p din_p + h_p --> h_c + din_c din_e <=> din_p 25dkglcn_c + nadph_c + h_c --> 2dhguln_c + nadp_c h_c + 25dkglcn_c + nadh_c --> nad_c + 5dglcn_c nadph_c + 25dkglcn_c + h_c --> nadp_c + 5dglcn_c dmpp_c + ipdp_c --> grdp_c + ppi_c h2mb4p_c + h_c + nadh_c --> dmpp_c + nad_c + h2o_c 2omhmbl_c + amet_c --> h_c + ahcys_c + q8h2_c dmso_c + mql8_c --> mqn8_c + dms_c + h2o_c mql8_c + dmso_p --> dms_p + mqn8_c + h2o_p 2dmmql8_c + dmso_c --> dms_c + 2dmmq8_c + h2o_c 2dmmql8_c + dmso_p --> dms_p + h2o_p + 2dmmq8_c dmso_e <=> dmso_p dmso_p <=> dmso_c dms_e <=> dms_p dhpmp_c + h2o_c --> pi_c + dhnpt_c ahdt_c + h2o_c --> ppi_c + dhpmp_c + h_c 23doguln_c + nadh_c + h_c --> nad_c + 3dhguln_c dopa_e <=> dopa_p doxrbcn_e <=> doxrbcn_p doxrbcn_p + h_p --> doxrbcn_e + h_c dpcoa_c + atp_c --> coa_c + adp_c + h_c 2dhp_c + nadph_c + h_c --> nadp_c + pant__R_c 2dr5p_c --> acald_c + g3p_c q8_c + dsbard_p --> dsbaox_p + q8h2_c dsbard_p + mqn8_c --> dsbaox_p + mql8_c 2.0 gthrd_p + dsbcox_p --> dsbcrd_p + gthox_p trdrd_c + dsbdox_c --> dsbdrd_c + trdox_c dsbgox_p + 2.0 gthrd_p --> dsbgrd_p + gthox_p nadp_c + ser__D_c <=> 2amsa_c + nadph_c + h_c ser__D_p + h_p --> ser__D_c + h_c ser__D_e <=> ser__D_p tartr__D_c --> oaa_c + h2o_c dtmp_c + atp_c <=> dtdp_c + adp_c dtmp_e <=> dtmp_p dump_e <=> dump_p 56dura_c + nad_c <=> nadh_c + ura_c + h_c duri_c + atp_c --> dump_c + adp_c + h_c pi_c + duri_c <=> 2dr1p_c + ura_c duri_p + h_p --> duri_c + h_c duri_e <=> duri_p h2o_c + dutp_c --> dump_c + ppi_c + h_c h_c + nadph_c + dxyl5p_c --> nadp_c + 2me4p_c g3p_c + pyr_c + h_c --> co2_c + dxyl5p_c dxyl_c + atp_c --> h_c + adp_c + dxyl5p_c e4p_c + nad_c + h2o_c <=> nadh_c + 2.0 h_c + 4per_c nadh_c + h_c + tdec2eACP_c --> dcaACP_c + nad_c h_c + nadph_c + tdec2eACP_c --> dcaACP_c + nadp_c nadh_c + tddec2eACP_c + h_c --> nad_c + ddcaACP_c tddec2eACP_c + nadph_c + h_c --> nadp_c + ddcaACP_c nadh_c + t3c5ddeceACP_c + h_c --> nad_c + cddec5eACP_c t3c5ddeceACP_c + nadph_c + h_c --> nadp_c + cddec5eACP_c tmrs2eACP_c + nadh_c + h_c --> nad_c + myrsACP_c tmrs2eACP_c + nadph_c + h_c --> myrsACP_c + nadp_c nadh_c + t3c7mrseACP_c + h_c --> tdeACP_c + nad_c nadph_c + t3c7mrseACP_c + h_c --> nadp_c + tdeACP_c nadh_c + tpalm2eACP_c + h_c --> palmACP_c + nad_c nadph_c + tpalm2eACP_c + h_c --> palmACP_c + nadp_c nadh_c + t3c9palmeACP_c + h_c --> nad_c + hdeACP_c t3c9palmeACP_c + nadph_c + h_c --> nadp_c + hdeACP_c toctd2eACP_c + nadh_c + h_c --> nad_c + ocdcaACP_c toctd2eACP_c + nadph_c + h_c --> nadp_c + ocdcaACP_c t3c11vaceACP_c + h_c + nadh_c --> nad_c + octeACP_c t3c11vaceACP_c + nadph_c + h_c --> nadp_c + octeACP_c nadh_c + but2eACP_c + h_c --> butACP_c + nad_c but2eACP_c + nadph_c + h_c --> butACP_c + nadp_c nadh_c + thex2eACP_c + h_c --> hexACP_c + nad_c thex2eACP_c + nadph_c + h_c --> hexACP_c + nadp_c toct2eACP_c + h_c + nadh_c --> nad_c + ocACP_c toct2eACP_c + nadph_c + h_c --> nadp_c + ocACP_c eca4colipa_p + atp_c + h2o_c --> eca4colipa_e + h_c + pi_c + adp_c eca4und_p + colipa_p --> udcpdp_p + h_p + eca4colipa_p 2.0 unagamuf_p --> h_p + eca2und_p + udcpdp_p eca2und_p + unagamuf_p --> eca3und_p + h_p + udcpdp_p eca3und_p + unagamuf_p --> eca4und_p + h_p + udcpdp_p unagamuf_c --> unagamuf_p 3hbcoa_c <=> b2coa_c + h2o_c 3hhcoa_c <=> hx2coa_c + h2o_c 3hocoa_c <=> h2o_c + oc2coa_c 3hdcoa_c <=> dc2coa_c + h2o_c 3hddcoa_c <=> h2o_c + dd2coa_c 3htdcoa_c <=> td2coa_c + h2o_c 3hhdcoa_c <=> hdd2coa_c + h2o_c 3hodcoa_c <=> od2coa_c + h2o_c 2ddg6p_c --> g3p_c + pyr_c 6pgc_c --> 2ddg6p_c + h2o_c kdo2lipid4_c + ddcaACP_c --> ACP_c + kdo2lipid4L_c myrsACP_c + kdo2lipid4L_c --> ACP_c + lipa_c hdeACP_c + kdo2lipid4_c --> kdo2lipid4p_c + ACP_c kdo2lipid4p_c + myrsACP_c --> ACP_c + lipa_cold_c egmeACP_c + nadph_c + h_c --> nadp_c + gmeACP_c enlipa_p + atp_c + h2o_c --> enlipa_e + h_c + pi_c + adp_c 2pg_c <=> pep_c + h2o_c 3.0 seramp_c + 3.0 23dhba_c --> enter_c + 6.0 amp_c + 9.0 h_c enter_c + 3.0 h2o_c --> 3.0 23dhbzs_c + 3.0 h_c 3.0 h2o_c + feenter_c --> fe3_c + 3.0 23dhbzs_c + 3.0 h_c epmeACP_c + nadph_c + h_c --> nadp_c + pmeACP_c etha_c --> acald_c + nh4_c h_p + etha_p --> etha_c + h_c etha_e <=> etha_p ethso3_p + atp_c + h2o_c --> h_c + pi_c + adp_c + ethso3_c ethso3_e <=> ethso3_p etoh_e <=> etoh_p etoh_p <=> etoh_c f6p_c <=> g3p_c + dha_c h2o_c + f6p_c --> pi_c + fru_c f6p_p + 2.0 pi_c --> 2.0 pi_p + f6p_c f6p_e <=> f6p_p dcaACP_c + h2o_c --> ACP_c + dca_c + h_c h2o_c + ddcaACP_c --> ACP_c + ddca_c + h_c myrsACP_c + h2o_c --> ACP_c + ttdca_c + h_c tdeACP_c + h2o_c --> ttdcea_c + ACP_c + h_c palmACP_c + h2o_c --> ACP_c + hdca_c + h_c hdeACP_c + h2o_c --> ACP_c + hdcea_c + h_c ocACP_c + h2o_c --> ACP_c + octa_c + h_c dcacoa_c + h2o_c --> dca_c + coa_c + h_c ddcacoa_c + h2o_c --> coa_c + ddca_c + h_c tdcoa_c + h2o_c --> coa_c + ttdca_c + h_c tdecoa_c + h2o_c --> ttdcea_c + coa_c + h_c h2o_c + pmtcoa_c --> coa_c + hdca_c + h_c hdcoa_c + h2o_c --> coa_c + hdcea_c + h_c stcoa_c + h2o_c --> ocdca_c + coa_c + h_c h2o_c + odecoa_c --> coa_c + ocdcea_c + h_c hxcoa_c + h2o_c --> coa_c + hxa_c + h_c occoa_c + h2o_c --> coa_c + octa_c + h_c dca_p + coa_c + h_p + atp_c --> ppi_c + h_c + dcacoa_c + amp_c ddca_p + coa_c + h_p + atp_c --> ddcacoa_c + ppi_c + h_c + amp_c coa_c + ttdca_p + h_p + atp_c --> tdcoa_c + ppi_c + h_c + amp_c ttdcea_p + coa_c + h_p + atp_c --> ppi_c + h_c + tdecoa_c + amp_c coa_c + h_p + hdca_p + atp_c --> pmtcoa_c + ppi_c + h_c + amp_c atp_c + coa_c + h_p + hdcea_p --> ppi_c + h_c + hdcoa_c + amp_c coa_c + h_p + ocdca_p + atp_c --> stcoa_c + ppi_c + h_c + amp_c ocdcea_p + coa_c + h_p + atp_c --> ppi_c + h_c + odecoa_c + amp_c hxa_p + coa_c + h_p + atp_c --> ppi_c + hxcoa_c + h_c + amp_c octa_p + h_p + coa_c + atp_c --> ppi_c + h_c + occoa_c + amp_c fad_c + nadh_c + h_c --> nad_c + fadh2_c nadph_c + fad_c + h_c --> nadp_c + fadh2_c nad_c + hmgth_c <=> Sfglutth_c + nadh_c + h_c fald_e <=> fald_p fald_p <=> fald_c gthrd_c + fald_c <=> hmgth_c fdp_c <=> dhap_c + g3p_c s17bp_c <=> e4p_c + dhap_c fdp_c + h2o_c --> pi_c + f6p_c fuc__L_c <=> fcl__L_c fcl__L_c + atp_c --> fc1p_c + adp_c + h_c fc1p_c <=> dhap_c + lald__L_c fe2_c + ppp9_c --> pheme_c + 2.0 h_c 2.0 h_c + for_p + q8_c --> h_p + co2_p + q8h2_c mqn8_c + 2.0 h_c + for_p --> mql8_c + co2_p + h_p fmnh2_c + o2_c + isetac_c --> so3_c + gcald_c + h_c + fmn_c + h2o_c mso3_c + fmnh2_c + o2_c --> fald_c + so3_c + h_c + fmn_c + h2o_c fmnh2_c + ethso3_c + o2_c --> acald_c + so3_c + h_c + fmn_c + h2o_c fmnh2_c + butso3_c + o2_c --> so3_c + h_c + fmn_c + btal_c + h2o_c sulfac_c + fmnh2_c + o2_c --> so3_c + h_c + fmn_c + glx_c + h2o_c fe2_p + atp_c + h2o_c --> h_c + pi_c + fe2_c + adp_c fe2_p + h_p --> fe2_c + h_c fe2_c + h_p --> fe2_p + h_c fe2_e <=> fe2_p fe2_p --> fe2_c fe3dcit_p + h2o_c + atp_c --> fe3_c + 2.0 cit_c + h_c + pi_c + adp_c h_p + fe3dcit_e --> fe3dcit_p + h_c fe3dhbzs_c --> fe3_c + 23dhbzs_c fe3dhbzs_p + atp_c + h2o_c --> fe3dhbzs_c + h_c + pi_c + adp_c fe3dhbzs_e + h_p --> fe3dhbzs_p + h_c 2.0 fe3hox_c + fadh2_c --> fad_c + 2.0 h_c + 2.0 fe3hox_un_c + 2.0 fe2_c 2.0 fe3hox_c + fmnh2_c --> 2.0 h_c + 2.0 fe3hox_un_c + 2.0 fe2_c + fmn_c 2.0 fe3hox_c + rbflvrd_c --> 2.0 h_c + 2.0 fe3hox_un_c + 2.0 fe2_c + ribflv_c fe3hox_un_c + h_p --> fe3hox_un_p + h_c h_p + fe3hox_un_p --> fe3hox_un_e + h_c fe3hox_p + atp_c + h2o_c --> fe3hox_c + pi_c + h_c + adp_c fe3hox_un_e + fe3_e --> fe3hox_e fe3hox_e + h_p --> fe3hox_p + h_c 2.0 fe3_c + fadh2_c --> fad_c + 2.0 fe2_c + 2.0 h_c fe3_p + atp_c + h2o_c --> fe3_c + h_c + pi_c + adp_c fe3_e <=> fe3_p 2.0 fecrm_c + fadh2_c --> 2.0 h_c + fad_c + 2.0 fe2_c + 2.0 fecrm_un_c 2.0 fecrm_c + fmnh2_c --> 2.0 h_c + 2.0 fe2_c + fmn_c + 2.0 fecrm_un_c 2.0 fecrm_c + rbflvrd_c --> 2.0 h_c + 2.0 fe2_c + 2.0 fecrm_un_c + ribflv_c h_p + fecrm_un_p --> fecrm_un_e + h_c h_p + fecrm_un_c --> fecrm_un_p + h_c fecrm_p + atp_c + h2o_c --> fecrm_c + h_c + pi_c + adp_c fe3_e + fecrm_un_e --> fecrm_e fecrm_e + h_p --> fecrm_p + h_c 2.0 feenter_c + fadh2_c --> 2.0 h_c + 2.0 enter_c + fad_c + 2.0 fe2_c fmnh2_c + 2.0 feenter_c --> 2.0 h_c + 2.0 enter_c + 2.0 fe2_c + fmn_c rbflvrd_c + 2.0 feenter_c --> 2.0 h_c + 2.0 enter_c + 2.0 fe2_c + ribflv_c feenter_p + atp_c + h2o_c --> h_c + pi_c + adp_c + feenter_c fe3_e + enter_e --> feenter_e h_p + enter_p --> h_c + enter_e feenter_e + h_p --> feenter_p + h_c enter_c + h_p --> h_c + enter_p 2.0 feoxam_c + fadh2_c --> 2.0 feoxam_un_c + 2.0 h_c + fad_c + 2.0 fe2_c 2.0 feoxam_c + fmnh2_c --> 2.0 feoxam_un_c + 2.0 h_c + 2.0 fe2_c + fmn_c 2.0 feoxam_c + rbflvrd_c --> 2.0 feoxam_un_c + 2.0 h_c + 2.0 fe2_c + ribflv_c feoxam_un_p + h_p --> feoxam_un_e + h_c feoxam_un_c + h_p --> feoxam_un_p + h_c feoxam_p + atp_c + h2o_c --> feoxam_c + h_c + pi_c + adp_c feoxam_un_e + fe3_e --> feoxam_e h_p + feoxam_e --> feoxam_p + h_c 4.0 fe2_p + o2_p + 4.0 h_p --> 2.0 h2o_p + 4.0 fe3_p 2.0 4fe4s_c + 2.0 h_c + h2o2_c --> 2.0 fe3_c + 2.0 3fe4s_c + 2.0 h2o_c 2.0 4fe4s_c + 2.0 no_c + 2.0 h_c --> 2.0 fe3_c + n2o_c + 2.0 3fe4s_c + h2o_c fe2_c + 3fe4s_c --> 4fe4s_c suc6p_c + h2o_c --> g6p_c + fru_c h_c + for_c --> co2_c + h2_c nadph_c + 2.0 flxso_c --> nadp_c + 2.0 flxr_c + h_c ribflv_c + nadph_c + h_c --> rbflvrd_c + nadp_c ribflv_c + nadh_c + h_c --> rbflvrd_c + nad_c mettrna_c + 10fthf_c --> fmettrna_c + thf_c + h_c fmn_c + atp_c + h_c --> fad_c + ppi_c nadh_c + fmn_c + h_c --> fmnh2_c + nad_c fmn_c + nadph_c + h_c --> fmnh2_c + nadp_c 5fthf_c + h_c --> methf_c + h2o_c oxa_c + forcoa_c <=> oxalcoa_c + for_c for_p + h_p --> h_c + for_c for_e <=> for_p for_c --> for_p mql8_c + fum_c --> mqn8_c + succ_c 2dmmql8_c + fum_c --> 2dmmq8_c + succ_c f1p_c + atp_c --> fdp_c + adp_c + h_c h2o_c + frulysp_c <=> g6p_c + lys__L_c psclys_c <=> frulys_c frulys_c + atp_c --> h_c + adp_c + frulysp_c frulys_p + h_p --> frulys_c + h_c frulys_e <=> frulys_p fruur_p + h_p <=> fruur_c + h_c fruur_e <=> fruur_p fru_p + pep_c --> pyr_c + f6p_c fru_p + pep_c --> pyr_c + f1p_c fru_e <=> fru_p h2o_c + 10fthf_c --> h_c + thf_c + for_c thf_c + for_c + atp_c --> pi_c + 10fthf_c + adp_c fuc__L_e <=> fuc__L_p fuc__L_p + h_p <=> fuc__L_c + h_c fum_c + h2o_c <=> mal__L_c 2.0 h_p + fum_p --> fum_c + 2.0 h_c 3.0 h_p + fum_p --> fum_c + 3.0 h_c fum_e <=> fum_p fusa_e <=> fusa_p h_p + fusa_p --> fusa_e + h_c accoa_c + gam1p_c --> acgam1p_c + coa_c + h_c g1p_p + h2o_p --> glc__D_p + pi_p g1p_c + dttp_c + h_c --> dtdpglu_c + ppi_c g1p_e <=> g1p_p glu1sa_c <=> 5aop_c glyc2p_c + h2o_c --> glyc_c + pi_c glyc2p_p + h2o_p --> pi_p + glyc_p ddcaACP_c + glyc3p_c --> ACP_c + 1ddecg3p_c glyc3p_c + myrsACP_c --> 1tdecg3p_c + ACP_c glyc3p_c + tdeACP_c --> 1tdec7eg3p_c + ACP_c palmACP_c + glyc3p_c --> 1hdecg3p_c + ACP_c glyc3p_c + hdeACP_c --> 1hdec9eg3p_c + ACP_c glyc3p_c + ocdcaACP_c --> 1odecg3p_c + ACP_c glyc3p_c + octeACP_c --> 1odec11eg3p_c + ACP_c g3pc_p + atp_c + h2o_c --> h_c + pi_c + adp_c + g3pc_c g3pc_e <=> g3pc_p glyc3p_c + nadp_c <=> dhap_c + nadph_c + h_c glyc3p_c + q8_c --> dhap_c + q8h2_c glyc3p_c + mqn8_c --> dhap_c + mql8_c glyc3p_c + 2dmmq8_c --> 2dmmql8_c + dhap_c g3pe_p + atp_c + h2o_c --> h_c + g3pe_c + pi_c + adp_c g3pe_e <=> g3pe_p g3pg_p + atp_c + h2o_c --> g3pg_c + h_c + pi_c + adp_c g3pg_e <=> g3pg_p g3pi_p + atp_c + h2o_c --> g3pi_c + h_c + pi_c + adp_c g3pi_e <=> g3pi_p g3ps_p + atp_c + h2o_c --> g3ps_c + pi_c + h_c + adp_c g3ps_e <=> g3ps_p glyc3p_c + h2o_c --> glyc_c + pi_c glu5sa_c --> h_c + 1pyr5c_c + h2o_c nadph_c + h_c + glu5p_c --> pi_c + glu5sa_c + nadp_c gam6p_c + h2o_c --> nh4_c + f6p_c nadp_c + g6p_c <=> nadph_c + 6pgl_c + h_c g6p_c + h2o_c --> glc__D_c + pi_c 2.0 pi_c + g6p_p --> g6p_c + 2.0 pi_p g6p_e <=> g6p_p h2o_p + gal1p_p --> gal_p + pi_p gal1p_e <=> gal1p_p gal_bD_e <=> gal_bD_p galct__D_c --> 5dh4dglc_c + h2o_c nad_c + galctn__L_c --> nadh_c + h_c + tagur_c galctn__D_c --> 2dh3dgal_c + h2o_c h_p + galctn__L_p --> galctn__L_c + h_c galctn__L_e <=> galctn__L_p galctn__D_p + h_p --> galctn__D_c + h_c galctn__D_e <=> galctn__D_p h_p + galct__D_p <=> galct__D_c + h_c galct__D_e <=> galct__D_p gal_c + atp_c <=> adp_c + gal1p_c + h_c gal_bD_p --> gal_p h2o_c + melib_c --> glc__D_c + gal_c gicolipa_c + udpg_c --> h_c + udp_c + gagicolipa_c pep_c + galt_p --> galt1p_c + pyr_c galt_e <=> galt_p galur_p + h_p <=> h_c + galur_c galur_e <=> galur_p utp_c + g1p_c + h_c --> udpg_c + ppi_c gal_p + atp_c + h2o_c --> h_c + pi_c + adp_c + gal_c gal_p + h_p --> gal_c + h_c gal_e <=> gal_p gam6p_p + 2.0 pi_c --> 2.0 pi_p + gam6p_c gam6p_e <=> gam6p_p pep_c + gam_p --> gam6p_c + pyr_c gam_e <=> gam_p g3p_c + pi_c + nad_c <=> h_c + 13dpg_c + nadh_c 10fthf_c + gar_c <=> fgam_c + thf_c + h_c gar_c + for_c + atp_c --> fgam_c + h_c + pi_c + adp_c gbbtn_e <=> gbbtn_p gcald_c + nad_c + h2o_c --> 2.0 h_c + nadh_c + glyclt_c gdpddman_c --> gdpofuc_c gdp_c + atp_c --> amp_c + h_c + ppgpp_c h2o_c + gdpmann_c --> gdp_c + man_c + h_c h2o_c + gdpmann_c --> gmp_c + man1p_c + 2.0 h_c gdptp_c + h2o_c --> ppi_c + gtp_c gdp_e <=> gdp_p f6p_c + gln__L_c --> gam6p_c + glu__L_c nadp_c + ggbutal_c + h2o_c <=> nadph_c + 2.0 h_c + gg4abut_c gg4abut_c + h2o_c --> glu__L_c + 4abut_c ggptrc_c + o2_c + h2o_c --> h2o2_c + nh4_c + ggbutal_c ptrc_c + glu__L_c + atp_c --> ggptrc_c + h_c + pi_c + adp_c nadh_c + h_c + sucsal_c <=> nad_c + ghb_c thf_c + ser__L_c <=> gly_c + h2o_c + mlthf_c gmp_c + atp_c <=> gdp_c + adp_c glycogen_c --> bglycogen_c glc__D_c + accoa_c <=> acglc__D_c + coa_c glc__D_p + h2o_p + q8_c --> glcn_p + h_p + q8h2_c glcn_p + h_p <=> glcn_c + h_c glcn_e <=> glcn_p glycogen_c + pi_c --> g1p_c bglycogen_c + pi_c --> g1p_c 5dh4dglc_c --> pyr_c + 2h3oppan_c glcr_c --> 5dh4dglc_c + h2o_c h_p + glcr_p <=> glcr_c + h_c glcr_e <=> glcr_p adpglc_c --> glycogen_c + adp_c + h_c icolipa_c + udpg_c --> gicolipa_c + udp_c + h_c udpg_c + gagicolipa_c --> udp_c + h_c + ggagicolipa_c udpg_c + ggagicolipa_c --> gggagicolipa_c + udp_c + h_c glcur1p_e <=> glcur1p_p glcur_p + h_p <=> glcur_c + h_c glcur_e <=> glcur_p glc__D_p + atp_c + h2o_c --> h_c + glc__D_c + pi_c + adp_c pep_c + glc__D_p --> g6p_c + pyr_c glc__D_p + h_p --> glc__D_c + h_c glc__D_e <=> glc__D_p glc__D_e --> glc__D_p bglycogen_c --> glycogen_c g1p_c + atp_c + h_c --> adpglc_c + ppi_c nh4_c + glu__L_c + atp_c --> gln__L_c + h_c + pi_c + adp_c trnagln_c + gln__L_c + atp_c --> glntrna_c + ppi_c + amp_c gln__L_p + atp_c + h2o_c --> gln__L_c + h_c + pi_c + adp_c gln__L_e <=> gln__L_p galt1p_c + nad_c <=> tag6p__D_c + nadh_c + h_c glu__L_c + atp_c --> glu5p_c + adp_c glu__L_p + 4abut_c <=> 4abut_p + glu__L_c cys__L_c + glu__L_c + atp_c --> h_c + pi_c + glucys_c + adp_c glu__L_c + h_c --> 4abut_c + co2_c nadp_c + glu__L_c + h2o_c <=> h_c + akg_c + nh4_c + nadph_c gln__L_c + h2o_c --> nh4_c + glu__L_c h2o_p + gln__L_p --> nh4_p + glu__L_p prpp_c + gln__L_c + h2o_c --> pram_c + ppi_c + glu__L_c glu__D_c <=> glu__L_c h_c + akg_c + nadph_c + gln__L_c --> nadp_c + 2.0 glu__L_c nadph_c + glutrna_c + h_c --> nadp_c + glu1sa_c + trnaglu_c trnaglu_c + glu__L_c + atp_c --> glutrna_c + ppi_c + amp_c glu__L_p + atp_c + h2o_c --> h_c + pi_c + adp_c + glu__L_c h_p + glu__L_p <=> glu__L_c + h_c glu__L_p + na1_p --> glu__L_c + na1_c glu__L_e <=> glu__L_p 2.0 glx_c + h_c --> 2h3oppan_c + co2_c glyald_e <=> glyald_p glyald_p <=> glyald_c accoa_c + gly_c <=> 2aobut_c + coa_c glyb_p + atp_c + h2o_c --> glyb_c + h_c + pi_c + adp_c glyb_p + h_p --> glyb_c + h_c glyb_e <=> glyb_p glyc2p_p + atp_c + h2o_c --> h_c + glyc2p_c + pi_c + adp_c glyc2p_e <=> glyc2p_p glyc3p_p + atp_c + h2o_c --> glyc3p_c + h_c + pi_c + adp_c pi_c + glyc3p_p --> glyc3p_c + pi_p glyc3p_e <=> glyc3p_p h_p + glyc__R_p <=> h_c + glyc__R_c glyc__R_e <=> glyc__R_p glyc_c + nad_c --> h_c + nadh_c + dha_c atp_c + glyc__R_c --> adp_c + 3pg_c + h_c glyc__R_c + atp_c --> adp_c + 2pg_c + h_c thf_c + gly_c + nad_c --> nadh_c + co2_c + nh4_c + mlthf_c nadh_c + glx_c + h_c --> nad_c + glyclt_c nadph_c + glx_c + h_c --> glyclt_c + nadp_c glyclt_p + h_p <=> glyclt_c + h_c glyclt_p + na1_p --> glyclt_c + na1_c glyclt_e <=> glyclt_p q8_c + glyclt_c --> glx_c + q8h2_c mqn8_c + glyclt_c --> mql8_c + glx_c 2dmmq8_c + glyclt_c --> 2dmmql8_c + glx_c glyc_e <=> glyc_p glyc_c <=> glyc_p glyc_c + atp_c --> glyc3p_c + adp_c + h_c lgt__S_c + h2o_c --> gthrd_c + h_c + lac__D_c mthgxl_c + h2o_c --> lac__D_c + h_c trnagly_c + gly_c + atp_c --> ppi_c + amp_c + glytrna_c gly_p + h_p --> gly_c + h_c gly_p + h_p <=> gly_c + h_c gly_p + na1_p --> gly_c + na1_c gly_e <=> gly_p gdpmann_c --> gdpddman_c + h2o_c gmhep1p_c + atp_c + h_c --> adphep_DD_c + ppi_c gmhep7p_c + atp_c --> adp_c + gmhep17bp_c + h_c gmhep17bp_c + h2o_c --> gmhep1p_c + pi_c nadph_c + 2.0 h_c + gmp_c --> imp_c + nh4_c + nadp_c atp_c + h2o_c + xmp_c + gln__L_c --> 2.0 h_c + ppi_c + gmp_c + glu__L_c + amp_c gmp_e <=> gmp_p nadp_c + 6pgc_c --> ru5p__D_c + nadph_c + co2_c glcn_c + atp_c --> 6pgc_c + adp_c + h_c gdpofuc_c + nadph_c + h_c --> nadp_c + gdpfuc_c gp4g_c + h2o_c --> 2.0 gdp_c + 2.0 h_c g3pc_c + h2o_c --> glyc3p_c + chol_c + h_c g3pc_p + h2o_p --> h_p + glyc3p_p + chol_p g3pe_c + h2o_c --> glyc3p_c + etha_c + h_c g3pe_p + h2o_p --> etha_p + h_p + glyc3p_p h2o_c + g3ps_c --> glyc3p_c + h_c + ser__L_c h2o_p + g3ps_p --> h_p + glyc3p_p + ser__L_p h2o_c + g3pg_c --> glyc3p_c + glyc_c + h_c g3pg_p + h2o_p --> h_p + glyc3p_p + glyc_p h2o_c + g3pi_c --> inost_c + glyc3p_c + h_c g3pi_p + h2o_p --> glyc3p_p + h_p + inost_p grdp_c + ipdp_c --> frdp_c + ppi_c 2.0 gthrd_c + grxox_c --> grxrd_c + gthox_c gsn_c + atp_c --> gmp_c + adp_c + h_c h_p + gsn_p --> gsn_c + h_c gsn_e <=> gsn_p gtspmd_c + h2o_c --> gthrd_c + spmd_c gthrd_c + spmd_c + atp_c --> h_c + gtspmd_c + pi_c + adp_c gthox_e <=> gthox_p gthox_c + nadph_c + h_c <=> 2.0 gthrd_c + nadp_c h2o2_c + 2.0 gthrd_c --> gthox_c + 2.0 h2o_c gthrd_p + h2o_p --> cgly_p + glu__L_p gthrd_c + atp_c + h2o_c --> gthrd_p + h_c + pi_c + adp_c gthrd_p + atp_c + h2o_c --> gthrd_c + h_c + pi_c + adp_c gthrd_e <=> gthrd_p gly_c + glucys_c + atp_c --> gthrd_c + h_c + pi_c + adp_c h2o_c + gtp_c --> ahdt_c + h_c + for_c gtp_c + 3.0 h2o_c --> for_c + 2.0 h_c + ppi_c + 25drapp_c gdptp_c + h2o_c --> pi_c + h_c + ppgpp_c atp_c + gtp_c --> gdptp_c + amp_c + h_c h2o_c + gtp_c + h_c --> nh4_c + xtp_c gtp_e <=> gtp_p gtp_c --> 35cgmp_c + ppi_c h_c + h2o_c + gua_c --> xan_c + nh4_c prpp_c + gua_c --> gmp_c + ppi_c gua_p + h_p --> h_c + gua_c gua_e <=> gua_p gua_p <=> gua_c glcur_c <=> fruur_c galur_c <=> tagur_c glcur1p_p + h2o_p --> glcur_p + pi_p h2o2_e <=> h2o2_p h2o_e <=> h2o_p h2o_p <=> h2o_c h2s_c + 2.0 o2_c --> so4_c + 2.0 h_c h2s_c --> h2s_p h2s_e <=> h2s_p h2_e <=> h2_p h2_p <=> h2_c nadh_c + h_c + aacoa_c <=> nad_c + 3hbcoa_c 3ohcoa_c + h_c + nadh_c <=> nad_c + 3hhcoa_c 3oocoa_c + h_c + nadh_c <=> 3hocoa_c + nad_c 3odcoa_c + nadh_c + h_c <=> nad_c + 3hdcoa_c nadh_c + 3oddcoa_c + h_c <=> nad_c + 3hddcoa_c nadh_c + 3otdcoa_c + h_c <=> nad_c + 3htdcoa_c h_c + nadh_c + 3ohdcoa_c <=> nad_c + 3hhdcoa_c 3oodcoa_c + nadh_c + h_c <=> 3hodcoa_c + nad_c nad_c + 3hadpcoa_c <=> oxadpcoa_c + nadh_c + h_c octdp_c + 4hbz_c --> 3ophb_c + ppi_c 3hcinnm_p + h_p <=> h_c + 3hcinnm_c 3hcinnm_e <=> 3hcinnm_p co2_c + h2o_c <=> hco3_c + h_c hcys__L_c + amet_c --> met__L_c + ahcys_c + h_c hcys__L_c + mmet_c --> 2.0 met__L_c + h_c hdca_e --> hdca_p hdcea_e --> hdcea_p pheme_c + frdp_c + h2o_c --> hemeO_c + ppi_c hhlipa_c + atp_c --> phhlipa_c + adp_c + h_c hphhlipa_c + atp_c --> adp_c + phphhlipa_c + h_c adphep_LD_c + lipa_c --> adp_c + hlipa_c + h_c adphep_LD_c + hlipa_c --> hhlipa_c + adp_c + h_c adphep_LD_c + phhlipa_c --> h_c + hphhlipa_c + adp_c gggagicolipa_c + adphep_LD_c --> colipa_c + adp_c + h_c 4mhetz_c + atp_c --> adp_c + 4mpetz_c + h_c glc__D_c + atp_c --> g6p_c + adp_c + h_c atp_c + man_c --> man6p_c + adp_c + h_c atp_c + fru_c --> adp_c + h_c + f6p_c h_p + hxa_p <=> hxa_c + h_c hg2_c + atp_c + h2o_c --> hg2_p + h_c + pi_c + adp_c h_p + hg2_c --> hg2_p + h_c hg2_e <=> hg2_p histd_c + 2.0 nad_c + h2o_c --> his__L_c + 3.0 h_c + 2.0 nadh_c hisp_c + h2o_c --> pi_c + histd_c his__L_c + trnahis_c + atp_c --> histrna_c + ppi_c + amp_c his__L_p + atp_c + h2o_c --> his__L_c + h_c + pi_c + adp_c h_p + his__L_p <=> his__L_c + h_c his__L_e <=> his__L_p h2o_c + hkndd_c --> h_c + op4en_c + succ_c hkntd_c + h2o_c --> fum_c + op4en_c + h_c 4.0 ppbng_c + h2o_c --> hmbil_c + 4.0 nh4_c 4ahmmp_c + atp_c --> adp_c + 4ampm_c + h_c hom__L_c + h_p --> hom__L_p + h_c hom__L_e <=> hom__L_p 4h2opntn_c --> pyr_c + acald_c atp_c + 6hmhpt_c --> amp_c + 6hmhptpp_c + h_c dhpppn_c + o2_c --> h_c + hkndd_c h_p + 3hpppn_p <=> 3hpppn_c + h_c 3hpppn_e <=> 3hpppn_p hpyr_c <=> 2h3oppan_c hpyr_c + nadh_c + h_c --> nad_c + glyc__R_c hpyr_c + nadph_c + h_c --> nadp_c + glyc__R_c hom__L_c + nadp_c <=> aspsa_c + nadph_c + h_c hom__L_c + atp_c --> adp_c + phom_c + h_c hom__L_c + succoa_c --> suchms_c + coa_c glu__L_c + imacp_c --> akg_c + hisp_c hxan_c + nad_c + h2o_c --> h_c + xan_c + nadh_c hxa_e <=> hxa_p accoa_c + hxa_c --> hxcoa_c + ac_c hxan_c + prpp_c --> imp_c + ppi_c q8_c + 2.0 h_c + h2_c --> 2.0 h_p + q8h2_c mqn8_c + h2_c + 2.0 h_c --> 2.0 h_p + mql8_c 2dmmq8_c + h2_c + 2.0 h_c --> 2dmmql8_c + 2.0 h_p h2o_c + pyam5p_c --> pi_c + pydam_c hxan_e <=> hxan_p hxan_p <=> hxan_c h_e <=> h_p iscssh_c + 2fe1s_c + iscu_c --> iscs_c + 4.0 h_c + iscu_2fe2s_c 2.0 iscssh_c + 2.0 fe2_c + iscu_c + fadh2_c --> 2.0 iscs_c + 6.0 h_c + fad_c + iscu_2fe2s_c 2.0 iscssh_c + iscu_2fe2s_c + 2.0 fe2_c + fadh2_c --> iscu_2fe2s2_c + 2.0 iscs_c + 6.0 h_c + fad_c iscu_2fe2s_c + 4.0 h_c --> 2fe2s_c + iscu_c iscu_2fe2s2_c + fadh2_c + 2.0 h_c --> fad_c + iscu_4fe4s_c iscu_4fe4s_c + 4.0 h_c --> 4fe4s_c + iscu_c nadp_c + icit_c <=> nadph_c + akg_c + co2_c chor_c <=> ichor_c chor_c --> ichor_c h2o_c + ichor_c --> pyr_c + 23ddhb_c icit_c --> glx_c + succ_c iscs_c + cys__L_c --> ala__L_c + iscssh_c nadh_c + 5dglcn_c + h_c <=> nad_c + idon__L_c nadph_c + 5dglcn_c + h_c --> nadp_c + idon__L_c idon__L_p + h_p <=> idon__L_c + h_c idon__L_e <=> idon__L_p prlp_c + gln__L_c --> h_c + aicar_c + glu__L_c + eig3p_c eig3p_c --> h2o_c + imacp_c 2cpr5p_c + h_c --> co2_c + 3ig3p_c + h2o_c ile__L_c + akg_c <=> glu__L_c + 3mop_c ile__L_c + trnaile_c + atp_c --> ppi_c + iletrna_c + amp_c ile__L_p + atp_c + h2o_c --> h_c + ile__L_c + pi_c + adp_c h_p + ile__L_p <=> ile__L_c + h_c ile__L_e <=> ile__L_p imp_c + h2o_c <=> fprica_c imp_c + nad_c + h2o_c --> nadh_c + h_c + xmp_c imp_e <=> imp_p h_c + indole_c --> h_p + indole_p h_p + indole_p <=> h_c + indole_c indole_e <=> indole_p inost_p + na1_p --> inost_c + na1_c ins_c + h2o_c --> hxan_c + rib__D_c ins_c + atp_c --> imp_c + adp_c + h_c inost_e <=> inost_p ins_p + h_p --> ins_c + h_c ins_p + h_p <=> ins_c + h_c ins_e <=> ins_p ipdp_c <=> dmpp_c h2mb4p_c + h_c + nadh_c --> nad_c + ipdp_c + h2o_c nad_c + 3c2hmp_c --> nadh_c + h_c + 3c4mop_c 3c2hmp_c <=> 2ippm_c + h2o_c h2o_c + 2ippm_c <=> 3c3hmp_c 3mob_c + accoa_c + h2o_c --> 3c3hmp_c + h_c + coa_c isetac_p + atp_c + h2o_c --> h_c + pi_c + adp_c + isetac_c isetac_e <=> isetac_p kdo2lipid4_c + atp_c + h2o_c --> kdo2lipid4_p + h_c + pi_c + adp_c kdo2lipid4_p + atp_c + h2o_c --> h_c + kdo2lipid4_e + pi_c + adp_c nadp_c + 23dhmb_c <=> alac__S_c + nadph_c + h_c 2ahbut_c + nadph_c + h_c <=> nadp_c + 23dhmp_c h_c + acACP_c + malACP_c --> co2_c + actACP_c + ACP_c h_c + malACP_c + accoa_c --> co2_c + actACP_c + coa_c kdo_c + ctp_c --> ckdo_c + ppi_c h2o_c + kdo8p_c --> pi_c + kdo_c ara5p_c + pep_c + h2o_c --> pi_c + kdo8p_c 3dhgulnp_c + h_c --> xu5p__L_c + co2_c k_p + atp_c + h2o_c --> k_c + h_c + pi_c + adp_c h_p + k_p --> k_c + h_c k_c + h_p --> k_p + h_c k_e <=> k_p lac__L_c + q8_c --> pyr_c + q8h2_c lac__L_c + mqn8_c --> pyr_c + mql8_c h_p + lac__L_p <=> lac__L_c + h_c lac__L_e <=> lac__L_p uLa4n_p + colipa_p --> acolipa_p + udcpp_p lcts_c + h2o_c --> glc__D_c + gal_c lcts_p + h2o_p --> glc__D_p + gal_p h2o_c + LalaDgluMdap_c --> LalaDglu_c + 26dap__M_c LalaDglu_e <=> LalaDglu_p h_p + LalaDglu_p --> LalaDglu_c + h_c LalaLglu_e <=> LalaLglu_p LalaLglu_p + h_p --> LalaLglu_c + h_c nadh_c + h_c + mthgxl_c --> lald__D_c + nad_c mthgxl_c + nadph_c + h_c --> lald__L_c + nadp_c LalaLglu_c + h2o_c --> ala__L_c + glu__L_c lald__L_c + nad_c + h2o_c --> lac__L_c + 2.0 h_c + nadh_c lald__D_c + h_c + nadh_c <=> nad_c + 12ppd__R_c lald__L_c + nadh_c + h_c <=> nad_c + 12ppd__S_c lcts_c + h_p --> lcts_p + h_c lcts_e <=> lcts_p lcts_p + h_p <=> lcts_c + h_c nad_c + lac__D_c <=> h_c + nadh_c + pyr_c lac__D_c + q8_c --> pyr_c + q8h2_c glu__L_c + 4mop_c --> akg_c + leu__L_c trnaleu_c + atp_c + leu__L_c --> leutrna_c + ppi_c + amp_c leu__L_p + atp_c + h2o_c --> pi_c + h_c + leu__L_c + adp_c leu__L_p + h_p <=> h_c + leu__L_c leu__L_e <=> leu__L_p gthrd_c + mthgxl_c --> lgt__S_c lipa_cold_c + atp_c + h2o_c --> lipa_cold_p + h_c + pi_c + adp_c h_e + hdca_e + colipa_e --> h2o_e + hacolipa_e h_e + lipa_e + hdca_e --> halipa_e + h2o_e lipoamp_c --> amp_c + lipopb_c lipoate_c + atp_c --> ppi_c + lipoamp_c lipa_c + atp_c + h2o_c --> lipa_p + h_c + pi_c + adp_c lipa_p + atp_c + h2o_c --> lipa_e + h_c + pi_c + adp_c h_c + ocACP_c --> ACP_c + octapb_c h_c + 4fe4s_c + nad_c + 2.0 amet_c + octapb_c --> 2fe2s_c + 2.0 met__L_c + nadh_c + lipopb_c + 2.0 dad_5_c + 2.0 fe2_c h_p + lipoate_p --> lipoate_c + h_c lipoate_e <=> lipoate_p lipidX_c + u23ga_c --> udp_c + lipidAds_c + h_c h2o_p + 1ddecg3p_p --> ddca_p + h_p + glyc3p_p 1tdecg3p_p + h2o_p --> h_p + glyc3p_p + ttdca_p 1tdec7eg3p_p + h2o_p --> ttdcea_p + h_p + glyc3p_p 1hdecg3p_p + h2o_p --> glyc3p_p + hdca_p + h_p 1hdec9eg3p_p + h2o_p --> h_p + glyc3p_p + hdcea_p 1odecg3p_p + h2o_p --> h_p + glyc3p_p + ocdca_p 1odec11eg3p_p + h2o_p --> glyc3p_p + h_p + ocdcea_p 1agpe120_p + h2o_p --> ddca_p + g3pe_p + h_p h2o_p + 1agpe140_p --> g3pe_p + h_p + ttdca_p 1agpe141_p + h2o_p --> ttdcea_p + h_p + g3pe_p h2o_p + 1agpe160_p --> g3pe_p + hdca_p + h_p 1agpe161_p + h2o_p --> g3pe_p + h_p + hdcea_p 1agpe180_p + h2o_p --> g3pe_p + h_p + ocdca_p h2o_p + 1agpe181_p --> g3pe_p + h_p + ocdcea_p 1agpg120_p + h2o_p --> ddca_p + h_p + g3pg_p 1agpg140_p + h2o_p --> h_p + g3pg_p + ttdca_p 1agpg141_p + h2o_p --> ttdcea_p + h_p + g3pg_p 1agpg160_p + h2o_p --> hdca_p + h_p + g3pg_p 1agpg161_p + h2o_p --> h_p + g3pg_p + hdcea_p 1agpg180_p + h2o_p --> h_p + g3pg_p + ocdca_p 1agpg181_p + h2o_p --> g3pg_p + h_p + ocdcea_p 2ddecg3p_c + h2o_c --> glyc3p_c + ddca_c + 2.0 h_c h2o_c + 2tdecg3p_c --> glyc3p_c + 2.0 h_c + ttdca_c h2o_c + 2tdec7eg3p_c --> ttdcea_c + glyc3p_c + 2.0 h_c 2hdecg3p_c + h2o_c --> 2.0 h_c + hdca_c + glyc3p_c h2o_c + 2hdec9eg3p_c --> glyc3p_c + hdcea_c + 2.0 h_c h2o_c + 2odecg3p_c --> glyc3p_c + 2.0 h_c + ocdca_c 2odec11eg3p_c + h2o_c --> glyc3p_c + ocdcea_c + 2.0 h_c 2agpe120_c + pg120_c --> g3pe_c + apg120_c 2agpe140_c + pg140_c --> apg140_c + g3pe_c pg141_c + 2agpe141_c --> g3pe_c + apg141_c pg160_c + 2agpe160_c --> g3pe_c + apg160_c 2agpe161_c + pg161_c --> g3pe_c + apg161_c 2agpe180_c + pg180_c --> g3pe_c + apg180_c pg181_c + 2agpe181_c --> g3pe_c + apg181_c pg120_c + 2agpg120_c --> apg120_c + g3pg_c 2agpg140_c + pg140_c --> apg140_c + g3pg_c pg141_c + 2agpg141_c --> g3pg_c + apg141_c pg160_c + 2agpg160_c --> g3pg_c + apg160_c pg161_c + 2agpg161_c --> apg161_c + g3pg_c 2agpg180_c + pg180_c --> apg180_c + g3pg_c pg181_c + 2agpg181_c --> g3pg_c + apg181_c 2agpe120_c + h2o_c --> g3pe_c + ddca_c + h_c 2agpe140_c + h2o_c --> g3pe_c + h_c + ttdca_c h2o_c + 2agpe141_c --> g3pe_c + ttdcea_c + h_c h2o_c + 2agpe160_c --> g3pe_c + hdca_c + h_c 2agpe161_c + h2o_c --> g3pe_c + hdcea_c + h_c h2o_c + 2agpe180_c --> g3pe_c + ocdca_c + h_c h2o_c + 2agpe181_c --> g3pe_c + ocdcea_c + h_c h2o_c + 2agpg120_c --> g3pg_c + ddca_c + h_c h2o_c + 2agpg140_c --> g3pg_c + ttdca_c + h_c h2o_c + 2agpg141_c --> ttdcea_c + g3pg_c + h_c h2o_c + 2agpg160_c --> g3pg_c + hdca_c + h_c h2o_c + 2agpg161_c --> h_c + g3pg_c + hdcea_c 2agpg180_c + h2o_c --> ocdca_c + g3pg_c + h_c 2agpg181_c + h2o_c --> ocdcea_c + g3pg_c + h_c nadp_c + ser__L_c <=> 2amsa_c + nadph_c + h_c lys__L_c + h_c --> 15dap_c + co2_c lys__L_c + atp_c + trnalys_c --> ppi_c + amp_c + lystrna_c lys__L_p + atp_c + h2o_c --> lys__L_c + h_c + pi_c + adp_c lys__L_p + h_p --> lys__L_c + h_c lys__L_c + h_p --> lys__L_p + h_c lys__L_e <=> lys__L_p lyx__L_c --> xylu__L_c h_p + lyx__L_p --> lyx__L_c + h_c lyx__L_e <=> lyx__L_p mnl1p_c + nad_c <=> nadh_c + f6p_c + h_c h_c + malACP_c --> acACP_c + co2_c malcoa_c + amet_c --> ahcys_c + malcoame_c nad_c + mal__D_c --> nadh_c + pyr_c + co2_c mal__D_p + 2.0 h_p --> mal__D_c + 2.0 h_c mal__D_e <=> mal__D_p accoa_c + glx_c + h2o_c --> mal__L_c + h_c + coa_c malt_c + accoa_c <=> coa_c + acmalt_c malthx_p + atp_c + h2o_c --> h_c + malthx_c + pi_c + adp_c malthx_e --> malthx_p maltpt_p + atp_c + h2o_c --> maltpt_c + h_c + pi_c + adp_c maltpt_e --> maltpt_p malttr_p + atp_c + h2o_c --> h_c + malttr_c + pi_c + adp_c malttr_e --> malttr_p maltttr_p + atp_c + h2o_c --> h_c + maltttr_c + adp_c + pi_c maltttr_e --> maltttr_p malt_p + atp_c + h2o_c --> h_c + malt_c + pi_c + adp_c pep_c + malt_p --> pyr_c + malt6p_c malt_e --> malt_p mal__L_p + 2.0 h_p --> mal__L_c + 2.0 h_c mal__L_p + 3.0 h_p --> mal__L_c + 3.0 h_c mal__L_c + h_p --> mal__L_p + h_c mal__L_e <=> mal__L_p man1p_c + gdp_c + h_c --> pi_c + gdpmann_c man6p_c <=> f6p_c 2.0 pi_c + man6p_p --> man6p_c + 2.0 pi_p man6p_e <=> man6p_p mana_c + nad_c <=> nadh_c + fruur_c + h_c pep_c + manglyc_p --> pyr_c + man6pglyc_c manglyc_e <=> manglyc_p man6pglyc_c + h2o_c --> man6p_c + glyc__R_c pep_c + man_p --> pyr_c + man6p_c man_e <=> man_p 2mcit_c --> 2mcacn_c + h2o_c micit_c <=> pyr_c + succ_c oaa_c + ppcoa_c + h2o_c --> h_c + coa_c + 2mcit_c ACP_c + malcoa_c <=> coa_c + malACP_c mercppyr_c + cyan_c --> tcynt_c + pyr_c + h_c murein5p5p_p --> murein5px4p_p + ala__D_p murein5p5p_p --> alaala_p + murein5px3p_p murein5p5p5p_p --> murein5px4px4p_p + 2.0 ala__D_p murein5px4p_p + h2o_p --> murein4px4p_p + ala__D_p murein5px4px4p_p + h2o_p --> murein4px4px4p_p + ala__D_p h2o_p + murein5p5p_p --> murein5p4p_p + ala__D_p h2o_p + murein5p4p_p --> murein4p4p_p + ala__D_p murein5p3p_p + h2o_p --> murein4p3p_p + ala__D_p murein4px4p_p + h2o_p --> murein4p4p_p murein3px4p_p + h2o_p --> murein4p3p_p murein5px4p_p + h2o_p --> murein5p4p_p murein4px4px4p_p + h2o_p --> murein4px4p4p_p nad_c + mal__L_c <=> oaa_c + nadh_c + h_c mal__L_c + q8_c --> oaa_c + q8h2_c mal__L_c + mqn8_c --> oaa_c + mql8_c nad_c + mal__L_c --> nadh_c + pyr_c + co2_c nadp_c + mal__L_c --> nadph_c + pyr_c + co2_c 2mecdp_c + h_c + 2.0 flxr_c --> 2.0 flxso_c + h2mb4p_c + h2o_c 2p4c2me_c --> 2mecdp_c + cmp_c melib_p + h_p --> melib_c + h_c h_p + melib_c --> melib_p + h_c melib_e <=> melib_p meoh_e <=> meoh_p meoh_p <=> meoh_c h_c + 2me4p_c + ctp_c --> 4c2me_c + ppi_c met__L_c + atp_c + h2o_c --> ppi_c + pi_c + amet_c h2o_c + met__D_p + atp_c --> adp_c + h_c + pi_c + met__D_c met__D_e <=> met__D_p h2o2_c + met__L_c --> metsox_S__L_c + h2o_c h2o2_c + met__L_c --> metsox_R__L_c + h2o_c 5mthf_c + hcys__L_c --> met__L_c + thf_c + h_c metsox_S__L_p + atp_c + h2o_c --> metsox_S__L_c + h_c + pi_c + adp_c metsox_S__L_e <=> metsox_S__L_p metsox_R__L_p + atp_c + h2o_c --> h_c + pi_c + adp_c + metsox_R__L_c metsox_R__L_e <=> metsox_R__L_p trdrd_c + metsox_S__L_c --> met__L_c + trdox_c + h2o_c trdrd_c + metsox_R__L_c --> met__L_c + trdox_c + h2o_c trnamet_c + met__L_c + atp_c --> ppi_c + mettrna_c + amp_c met__L_p + atp_c + h2o_c --> h_c + met__L_c + pi_c + adp_c met__L_e <=> met__L_p mg2_p + 2.0 h_c <=> mg2_c + 2.0 h_p mg2_e <=> mg2_p mg2_p --> mg2_c mg2_p + atp_c + h2o_c --> mg2_c + h_c + pi_c + adp_c dhap_c --> pi_c + mthgxl_c mi1p__D_c + h2o_c --> inost_c + pi_c 2mcacn_c + h2o_c <=> micit_c mincyc_e <=> mincyc_p mincyc_p + h_p --> mincyc_e + h_c minohp_e --> minohp_p murein5px4p_p + h2o_p --> murein3px4p_p + alaala_p murein4p4p_p + h2o_p --> murein4p3p_p + ala__D_p h2o_p + murein5p5p_p --> murein5p3p_p + alaala_p murein4p3p_p + h2o_p --> murein3p3p_p + ala__D_p murein5px3p_p + h2o_p --> alaala_p + murein3px3p_p murein3px3p_p + h2o_p --> murein3p3p_p murein5px3p_p + h2o_p --> murein5p3p_p malttr_c + h2o_c --> glc__D_c + malt_c maltttr_c + h2o_c --> glc__D_c + malttr_c maltpt_c + h2o_c --> glc__D_c + maltttr_c h2o_c + malthx_c --> glc__D_c + maltpt_c h2o_c + malthp_c --> glc__D_c + malthx_c murein4p4p_p --> 2.0 anhgm4p_p murein4p3p_p --> anhgm3p_p + anhgm4p_p murein3p3p_p --> 2.0 anhgm3p_p murein4px4p4p_p --> murein4px4p_p + anhgm4p_p pi_c + maltpt_c <=> maltttr_c + g1p_c pi_c + malthx_c <=> maltpt_c + g1p_c malthp_c + pi_c <=> g1p_c + malthx_c mmcoa__S_c + h_c --> co2_c + ppcoa_c h_p + mmet_p --> h_c + mmet_c mmet_e <=> mmet_p succoa_c --> mmcoa__S_c mn2_c + h_p --> mn2_p + h_c mn2_p --> mn2_c man6p_c + h2o_c --> pi_c + man_c pep_c + mnl_p --> mnl1p_c + pyr_c mnl_e <=> mnl_p mana_c --> h2o_c + 2ddglcn_c h_p + mn2_p --> mn2_c + h_c mn2_e <=> mn2_p iscssh_c + moadamp_c + nadh_c --> iscs_c + moadcosh_c + nad_c + amp_c lipidA_c + ckdo_c --> kdolipid4_c + cmp_c + h_c ckdo_c + kdolipid4_c --> kdo2lipid4_c + cmp_c + h_c phphhlipa_c + ckdo_c --> cmp_c + kphphhlipa_c + h_c mobd_p + atp_c + h2o_c --> mobd_c + pi_c + h_c + adp_c mobd_e <=> mobd_p h_c + moco_c + ctp_c --> mococdp_c + ppi_c mptamp_c + mobd_c + 2.0 h_c --> amp_c + cu2_c + moco_c + h2o_c gtp_c + moco_c + h_c --> mocogdp_c + ppi_c 3mob_c + mlthf_c + h2o_c --> 2dhp_c + thf_c mal__L_c + o2_c <=> h2o2_c + oaa_c mpt_c + atp_c + h_c --> mptamp_c + ppi_c 2.0 uaagmda_c --> 2.0 udcpdp_c + murein5p5p_p + 2.0 h_c uaagmda_c + murein5p5p_p --> murein5p5p5p_p + udcpdp_c + h_c cpmp_c + 2.0 moadcosh_c + cu2_c --> 2.0 moadcoo_c + 5.0 h_c + mpt_c moadcoo_c + atp_c + h_c --> moadamp_c + ppi_c msa_c + nadph_c + h_c --> 3hpp_c + nadp_c mso3_p + atp_c + h2o_c --> mso3_c + h_c + pi_c + adp_c mso3_e <=> mso3_p h2o_c + 5mta_c --> ade_c + 5mtr_c methf_c + h2o_c <=> 10fthf_c + h_c nadp_c + mlthf_c <=> methf_c + nadph_c nadh_c + mlthf_c + 2.0 h_c --> 5mthf_c + nad_c mdhdhf_c + h2o_c --> mththf_c Nmtrp_c + o2_c + h2o_c --> trp__L_c + h2o2_c + fald_c n2o_e <=> n2o_p n2o_p <=> n2o_c acg5sa_c + h2o_c --> ac_c + glu5sa_c nac_e <=> nac_p nac_p --> nac_c nad_c + h2o_c --> amp_c + 2.0 h_c + nmn_c nadh_c + mqn8_c + h_c --> mql8_c + nad_c 4.0 h_c + nadh_c + q8_c --> 3.0 h_p + nad_c + q8h2_c mqn8_c + 4.0 h_c + nadh_c --> mql8_c + nad_c + 3.0 h_p 4.0 h_c + nadh_c + 2dmmq8_c --> 2dmmql8_c + nad_c + 3.0 h_p nadh_c + q8_c + h_c --> nad_c + q8h2_c nadh_c + 2dmmq8_c + h_c --> 2dmmql8_c + nad_c nad_c + atp_c --> nadp_c + adp_c + h_c nad_c + h2o_c --> ncam_c + adprib_c + h_c h_c + q8_c + nadph_c --> nadp_c + q8h2_c mqn8_c + nadph_c + h_c --> nadp_c + mql8_c nadph_c + 2dmmq8_c + h_c --> 2dmmql8_c + nadp_c nadp_c + h2o_c --> pi_c + nad_c dnad_c + nh4_c + atp_c --> ppi_c + h_c + nad_c + amp_c nadph_c + nad_c --> nadp_c + nadh_c nac_c + h2o_c + prpp_c + atp_c --> ppi_c + nicrnt_c + pi_c + adp_c 3.0 h_p + 2.0 na1_c --> 3.0 h_c + 2.0 na1_p 2.0 h_p + na1_c --> 2.0 h_c + na1_p h_p + na1_c --> h_c + na1_p na1_e <=> na1_p gdp_c + atp_c <=> gtp_c + adp_c udp_c + atp_c <=> utp_c + adp_c cdp_c + atp_c <=> adp_c + ctp_c dtdp_c + atp_c <=> dttp_c + adp_c dgdp_c + atp_c <=> dgtp_c + adp_c dudp_c + atp_c <=> dutp_c + adp_c atp_c + dcdp_c <=> dctp_c + adp_c dadp_c + atp_c <=> datp_c + adp_c nh4_e <=> nh4_p nh4_p <=> nh4_c h_c + 2.0 no_c + nadh_c --> n2o_c + nad_c + h2o_c ni2_c + atp_c + h2o_c --> ni2_p + h_c + pi_c + adp_c ni2_c + h_p --> ni2_p + h_c ni2_e <=> ni2_p ni2_p --> ni2_c ni2_p + atp_c + h2o_c --> ni2_c + h_c + pi_c + adp_c nmn_c + atp_c + h_c --> nad_c + ppi_c nmn_c + h2o_c --> nicrnt_c + nh4_c nmn_c + h2o_c --> h_c + ncam_c + r5p_c nmn_p --> nmn_c h2o_c + nmn_p --> h_c + r5p_c + ncam_c nmn_e <=> nmn_p ncam_c + h2o_c --> nh4_c + nac_c nicrnt_c + atp_c + h_c <=> dnad_c + ppi_c dmbzid_c + nicrnt_c --> nac_c + 5prdmbz_c + h_c quln_c + 2.0 h_c + prpp_c --> ppi_c + nicrnt_c + co2_c no2_p + h_p <=> no2_c + h_c no2_e <=> no2_p no3_p + q8h2_c --> h2o_p + no2_p + q8_c no3_c + 2.0 h_c + q8h2_c --> no2_c + 2.0 h_p + h2o_c + q8_c mql8_c + no3_p --> no2_p + mqn8_c + h2o_p no3_c + 2.0 h_c + mql8_c --> no2_c + mqn8_c + 2.0 h_p + h2o_c no2_c + no3_p --> no3_c + no2_p no3_e <=> no3_p 2.0 no_c + nadh_c + 2.0 o2_c --> 2.0 no3_c + h_c + nad_c 2.0 no_c + 2.0 o2_c + nadph_c --> 2.0 no3_c + nadp_c + h_c novbcn_e <=> novbcn_p novbcn_p + h_p --> novbcn_e + h_c no_e <=> no_p no_p <=> no_c dump_c + h2o_c --> duri_c + pi_c xmp_c + h2o_c --> pi_c + xtsn_c xmp_p + h2o_p --> pi_p + xtsn_p imp_c + h2o_c --> pi_c + ins_c imp_p + h2o_p --> ins_p + pi_p dimp_c + h2o_c --> pi_c + din_c dimp_p + h2o_p --> din_p + pi_p dump_p + h2o_p --> duri_p + pi_p ump_c + h2o_c --> pi_c + uri_c h2o_p + ump_p --> pi_p + uri_p dcmp_c + h2o_c --> dcyt_c + pi_c h2o_p + dcmp_p --> pi_p + dcyt_p cmp_c + h2o_c --> pi_c + cytd_c h2o_p + cmp_p --> cytd_p + pi_p dtmp_c + h2o_c --> pi_c + thymd_c dtmp_p + h2o_p --> thymd_p + pi_p damp_c + h2o_c --> pi_c + dad_2_c damp_p + h2o_p --> dad_2_p + pi_p h2o_c + amp_c --> pi_c + adn_c amp_p + h2o_p --> pi_p + adn_p dgmp_c + h2o_c --> dgsn_c + pi_c dgmp_p + h2o_p --> dgsn_p + pi_p gmp_c + h2o_c --> pi_c + gsn_c gmp_p + h2o_p --> pi_p + gsn_p h2o_c + atp_c --> pi_c + adp_c + h_c itp_c + h2o_c --> pi_c + idp_c + h_c h2o_c + ditp_c --> pi_c + didp_c + h_c h2o_c + xtp_c --> xdp_c + pi_c + h_c h2o_c + gtp_c --> pi_c + gdp_c + h_c gtp_p + h2o_p --> pi_p + h_p + gdp_p ctp_c + h2o_c --> pi_c + cdp_c + h_c dgtp_c + h2o_c --> dgmp_c + ppi_c + h_c h2o_c + ditp_c --> dimp_c + ppi_c + h_c h2o_c + xtp_c --> xmp_c + ppi_c + h_c h2o_c + gtp_c --> gmp_c + ppi_c + h_c dctp_c + h2o_c --> dcmp_c + ppi_c + h_c h2o_c + ctp_c --> h_c + ppi_c + cmp_c h2o_c + datp_c --> ppi_c + damp_c + h_c atp_c + h2o_c --> amp_c + h_c + ppi_c h2o_c + dttp_c --> dtmp_c + ppi_c + h_c h2o_c + utp_c --> ump_c + ppi_c + h_c itp_c + h2o_c --> imp_c + ppi_c + h_c dgtp_c + h2o_c --> pppi_c + dgsn_c gtp_c + h2o_c --> pppi_c + gsn_c no2_c + 5.0 h_c + 3.0 nadh_c --> 3.0 nad_c + nh4_c + 2.0 h2o_c no2_p + 2.0 h_p + 3.0 q8h2_c --> nh4_p + 2.0 h2o_p + 3.0 q8_c no2_p + 3.0 mql8_c + 2.0 h_p --> 3.0 mqn8_c + 2.0 h2o_p + nh4_p o16a4colipa_p + atp_c + h2o_c --> o16a4colipa_e + h_c + pi_c + adp_c o16a4und_p + colipa_p --> h_p + o16a4colipa_p + udcpdp_p 2.0 o16aund_p --> h_p + o16a2und_p + udcpdp_p o16a2und_p + o16aund_p --> h_p + udcpdp_p + o16a3und_p o16aund_p + o16a3und_p --> o16a4und_p + h_p + udcpdp_p accoa_c + ragund_c --> coa_c + aragund_c o16aund_c --> o16aund_p garagund_c + udpgalfur_c --> gfgaragund_c + udp_c + h_c aragund_c + udpg_c --> garagund_c + udp_c + h_c gfgaragund_c + udpg_c --> h_c + udp_c + o16aund_c o2s_e <=> o2s_p o2_e <=> o2_p o2_p <=> o2_c oaa_c + h_c --> pyr_c + co2_c 2obut_c + coa_c --> ppcoa_c + for_c cbp_c + orn_c <=> pi_c + h_c + citr__L_c ocdca_e --> ocdca_p ocdcea_e --> ocdcea_p octa_e <=> octa_p frdp_c + 5.0 ipdp_c --> octdp_c + 5.0 ppi_c h_c + atp_c + octa_c --> ppi_c + amp_c + octapb_c hgmeACP_c --> egmeACP_c + h2o_c ogmeACP_c + nadph_c + h_c --> nadp_c + hgmeACP_c h_c + malACP_c + malcoame_c --> ogmeACP_c + coa_c + co2_c ohpb_c + glu__L_c <=> akg_c + phthr_c amet_c + 2ohph_c --> 2omph_c + ahcys_c + h_c 2ombzl_c + amet_c --> 2ommbl_c + ahcys_c + h_c h_c + 3c4mop_c --> co2_c + 4mop_c 0.5 o2_c + 2ommbl_c --> 2omhmbl_c 3.0 h2o_c + nad_c + 2ommbl_c + 2.0 atp_c --> 3.0 h_c + 2.0 pi_c + 2omhmbl_c + nadh_c + 2.0 adp_c orot5p_c + h_c --> co2_c + ump_c 2omph_c + 0.5 o2_c --> 2ombzl_c 2omph_c + 3.0 h2o_c + nad_c + 2.0 atp_c --> 3.0 h_c + 2ombzl_c + 2.0 pi_c + nadh_c + 2.0 adp_c op4en_c + h2o_c --> 4h2opntn_c 3ophb_c + h_c --> co2_c + 2oph_c 0.5 o2_c + 2oph_c --> 2ohph_c 2oph_c + 3.0 h2o_c + nad_c + 2.0 atp_c --> 2ohph_c + 3.0 h_c + 2.0 pi_c + nadh_c + 2.0 adp_c hpmeACP_c --> epmeACP_c + h2o_c nadph_c + opmeACP_c + h_c --> nadp_c + hpmeACP_c gmeACP_c + h_c + malACP_c --> co2_c + opmeACP_c + ACP_c orn_c + h_c --> co2_c + ptrc_c orn_p + atp_c + h2o_c --> h_c + orn_c + pi_c + adp_c orn_e <=> orn_p orot_p + 2.0 h_p --> orot_c + 2.0 h_c orot_e <=> orot_p ppi_c + orot5p_c <=> prpp_c + orot_c pi_c + oxur_c --> cbp_c + oxam_c oxalcoa_c + h_c --> forcoa_c + co2_c nadp_c + 2oxpaccoa_c + 2.0 h2o_c --> 3oxdhscoa_c + 2.0 h_c + nadph_c coa_c + 3oxdhscoa_c --> accoa_c + 23dhacoa_c nad_c + 1pyr5c_c + 2.0 h2o_c --> h_c + nadh_c + glu__L_c 1pyr5c_c + nadph_c + 2.0 h_c --> pro__L_c + nadp_c pa120_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pa120_p pa140_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pa140_p pa141_c + h2o_c + atp_c --> h_c + pi_c + adp_c + pa141_p pa160_c + atp_c + h2o_c --> pa160_p + h_c + pi_c + adp_c h2o_c + atp_c + pa161_c --> pa161_p + h_c + pi_c + adp_c pa180_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pa180_p pa181_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pa181_p pacald_p + h_p <=> pacald_c + h_c pacald_e <=> pacald_p phaccoa_c + h_c + o2_c + nadph_c --> nadp_c + rephaccoa_c + h2o_c pac_c + coa_c + atp_c --> ppi_c + phaccoa_c + amp_c ala_B_c + pant__R_c + atp_c --> pnto__R_c + ppi_c + h_c + amp_c pa120_c + h2o_c --> pi_c + 12dgr120_c pa120_p + h2o_p --> 12dgr120_p + pi_p h2o_c + pa140_c --> 12dgr140_c + pi_c pa140_p + h2o_p --> 12dgr140_p + pi_p pa141_c + h2o_c --> pi_c + 12dgr141_c h2o_p + pa141_p --> 12dgr141_p + pi_p pa160_c + h2o_c --> pi_c + 12dgr160_c pa160_p + h2o_p --> 12dgr160_p + pi_p h2o_c + pa161_c --> pi_c + 12dgr161_c pa161_p + h2o_p --> 12dgr161_p + pi_p pa180_c + h2o_c --> 12dgr180_c + pi_c h2o_p + pa180_p --> 12dgr180_p + pi_p pa181_c + h2o_c --> pi_c + 12dgr181_c pa181_p + h2o_p --> pi_p + 12dgr181_p udcpp_c + ugmda_c --> ump_c + uagmda_c paps_c + trdrd_c --> trdox_c + so3_c + 2.0 h_c + pap_c paps_c + grxrd_c --> so3_c + grxox_c + 2.0 h_c + pap_c h2o_c + camp_c --> amp_c + h_c 35cgmp_c + h2o_c --> gmp_c + h_c pyr_c + coa_c + nad_c --> co2_c + nadh_c + accoa_c nad_c + pdx5p_c --> nadh_c + pydx5p_c + h_c o2_c + pdx5p_c --> h2o2_c + pydx5p_c phthr_c + nad_c + dxyl5p_c --> co2_c + pdx5p_c + h_c + nadh_c + pi_c + 2.0 h2o_c pdx5p_c + h2o_c --> pi_c + pydxn_c pe120_c + atp_c + h2o_c --> pe120_p + h_c + pi_c + adp_c pe140_c + atp_c + h2o_c --> pe140_p + h_c + pi_c + adp_c pe141_c + atp_c + h2o_c --> pe141_p + pi_c + h_c + adp_c pe160_c + atp_c + h2o_c --> h_c + pi_c + pe160_p + adp_c pe161_c + atp_c + h2o_c --> h_c + pe161_p + pi_c + adp_c pe180_c + atp_c + h2o_c --> pe180_p + h_c + pi_c + adp_c pe181_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pe181_p h2o_p + peamn_p + o2_p --> pacald_p + nh4_p + h2o2_p peamn_e <=> peamn_p nad_c + 4per_c <=> nadh_c + ohpb_c + h_c pe161_p + lipa_p --> 12dgr161_p + enlipa_p lipa_p + pe181_p --> enlipa_p + 12dgr181_p f6p_c + atp_c --> fdp_c + adp_c + h_c tag6p__D_c + atp_c --> tagdp__D_c + adp_c + h_c s7p_c + atp_c --> adp_c + s17bp_c + h_c pyr_c + coa_c --> accoa_c + for_c pg120_c + atp_c + h2o_c --> pg120_p + h_c + pi_c + adp_c pg140_c + atp_c + h2o_c --> pg140_p + h_c + pi_c + adp_c pg141_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pg141_p pg160_c + atp_c + h2o_c --> pg160_p + h_c + pi_c + adp_c pg161_c + h2o_c + atp_c --> h_c + pi_c + pg161_p + adp_c pg180_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pg180_p pg181_c + atp_c + h2o_c --> h_c + pi_c + pg181_p + adp_c gam1p_c <=> gam6p_c nad_c + 3pg_c --> nadh_c + 3php_c + h_c g6p_c <=> f6p_c 3pg_c + atp_c <=> 13dpg_c + adp_c h2o_c + 6pgl_c --> 6pgc_c + h_c h2o_c + 2pglyc_c --> pi_c + glyclt_c 2pg_c <=> 3pg_c g1p_c <=> g6p_c pgp120_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pgp120_p pgp140_c + atp_c + h2o_c --> h_c + pgp140_p + pi_c + adp_c pgp141_c + atp_c + h2o_c --> h_c + pi_c + pgp141_p + adp_c pgp160_c + atp_c + h2o_c --> h_c + pi_c + adp_c + pgp160_p pgp161_c + atp_c + h2o_c --> pgp161_p + h_c + pi_c + adp_c pgp180_c + atp_c + h2o_c --> pgp180_p + h_c + pi_c + adp_c pgp181_c + atp_c + h2o_c --> h_c + pgp181_p + pi_c + adp_c pgp120_c + h2o_c --> pg120_c + pi_c pgp120_p + h2o_p --> pg120_p + pi_p pgp140_c + h2o_c --> pi_c + pg140_c pgp140_p + h2o_p --> pg140_p + pi_p h2o_c + pgp141_c --> pg141_c + pi_c pgp141_p + h2o_p --> pi_p + pg141_p pgp160_c + h2o_c --> pg160_c + pi_c pgp160_p + h2o_p --> pg160_p + pi_p pgp161_c + h2o_c --> pi_c + pg161_c h2o_p + pgp161_p --> pg161_p + pi_p pgp180_c + h2o_c --> pi_c + pg180_c pgp180_p + h2o_p --> pi_p + pg180_p pgp181_c + h2o_c --> pg181_c + pi_c pgp181_p + h2o_p --> pi_p + pg181_p glyc3p_c + cdpdddecg_c --> pgp120_c + cmp_c + h_c cdpdtdecg_c + glyc3p_c --> pgp140_c + cmp_c + h_c glyc3p_c + cdpdtdec7eg_c --> h_c + cmp_c + pgp141_c glyc3p_c + cdpdhdecg_c --> pgp160_c + cmp_c + h_c glyc3p_c + cdpdhdec9eg_c --> pgp161_c + cmp_c + h_c cdpdodecg_c + glyc3p_c --> pgp180_c + cmp_c + h_c glyc3p_c + cdpdodec11eg_c --> pgp181_c + cmp_c + h_c pheme_c + atp_c + h2o_c --> h_c + pi_c + pheme_p + adp_c pheme_p --> pheme_e phe__L_c + akg_c <=> phpyr_c + glu__L_c phe__L_c + trnaphe_c + atp_c --> ppi_c + amp_c + phetrna_c h_p + phe__L_p <=> phe__L_c + h_c phe__L_e <=> phe__L_p minohp_p + 6.0 h2o_p --> 6.0 pi_p + inost_p h_p + pi_p <=> pi_c + h_c pi_e <=> pi_p pi_p + atp_c + h2o_c --> h_c + 2.0 pi_c + adp_c pa120_p + h2o_p --> ddca_p + 2ddecg3p_p pa140_p + h2o_p --> ttdca_p + 2tdecg3p_p h2o_p + pa141_p --> ttdcea_p + 2tdec7eg3p_p h2o_p + pa160_p --> 2hdecg3p_p + hdca_p pa161_p + h2o_p --> 2hdec9eg3p_p + hdcea_p h2o_p + pa180_p --> ocdca_p + 2odecg3p_p pa181_p + h2o_p --> 2odec11eg3p_p + ocdcea_p pe120_p + h2o_p --> ddca_p + h_p + 2agpe120_p h2o_p + pe140_p --> h_p + 2agpe140_p + ttdca_p h2o_p + pe141_p --> ttdcea_p + 2agpe141_p + h_p pe160_p + h2o_p --> hdca_p + h_p + 2agpe160_p pe161_p + h2o_p --> 2agpe161_p + h_p + hdcea_p pe180_p + h2o_p --> 2agpe180_p + h_p + ocdca_p pe181_p + h2o_p --> ocdcea_p + h_p + 2agpe181_p pg120_p + h2o_p --> ddca_p + 2agpg120_p + h_p pg140_p + h2o_p --> h_p + 2agpg140_p + ttdca_p h2o_p + pg141_p --> 2agpg141_p + ttdcea_p + h_p pg160_p + h2o_p --> hdca_p + h_p + 2agpg160_p pg161_p + h2o_p --> 2agpg161_p + h_p + hdcea_p pg180_p + h2o_p --> 2agpg180_p + h_p + ocdca_p h2o_p + pg181_p --> ocdcea_p + 2agpg181_p + h_p pa120_p + h2o_p --> ddca_p + h_p + 1ddecg3p_p pa140_p + h2o_p --> 1tdecg3p_p + h_p + ttdca_p h2o_p + pa141_p --> ttdcea_p + 1tdec7eg3p_p + h_p pa160_p + h2o_p --> hdca_p + 1hdecg3p_p + h_p pa161_p + h2o_p --> 1hdec9eg3p_p + h_p + hdcea_p pa180_p + h2o_p --> h_p + 1odecg3p_p + ocdca_p pa181_p + h2o_p --> 1odec11eg3p_p + h_p + ocdcea_p pe120_p + h2o_p --> ddca_p + h_p + 1agpe120_p h2o_p + pe140_p --> h_p + 1agpe140_p + ttdca_p h2o_p + pe141_p --> ttdcea_p + 1agpe141_p + h_p pe160_p + h2o_p --> hdca_p + h_p + 1agpe160_p pe161_p + h2o_p --> 1agpe161_p + h_p + hdcea_p pe180_p + h2o_p --> h_p + 1agpe180_p + ocdca_p pe181_p + h2o_p --> h_p + 1agpe181_p + ocdcea_p pg120_p + h2o_p --> ddca_p + 1agpg120_p + h_p pg140_p + h2o_p --> h_p + 1agpg140_p + ttdca_p pg141_p + h2o_p --> ttdcea_p + h_p + 1agpg141_p h2o_p + pg160_p --> h_p + hdca_p + 1agpg160_p pg161_p + h2o_p --> h_p + hdcea_p + 1agpg161_p pg180_p + h2o_p --> 1agpg180_p + h_p + ocdca_p h2o_p + pg181_p --> ocdcea_p + 1agpg181_p + h_p man1p_c <=> man6p_c 5aprbu_c + h2o_c --> 4r5au_c + pi_c pmeACP_c + h2o_c --> meoh_c + pimACP_c 4ampm_c + atp_c --> 2mahmp_c + adp_c pnto__R_c + atp_c --> adp_c + 4ppan_c + h_c pnto__R_p + na1_p --> pnto__R_c + na1_c pnto__R_e <=> pnto__R_p nadh_c + poaac_c --> 3amac_c + nad_c + h2o_c 2.0 flxso_c + pyr_c + coa_c <=> h_c + accoa_c + 2.0 flxr_c + co2_c h2o_c + pyr_c + q8_c --> co2_c + ac_c + q8h2_c h2o_c + ppi_c --> 2.0 pi_c + h_c pppi_c + h2o_c --> pi_c + ppi_c + h_c ppap_c + adp_c <=> ppa_c + atp_c ppal_e <=> ppal_p ppal_c <=> ppal_p ppa_p + na1_p --> ppa_c + na1_c ppa_e <=> ppa_p 2.0 5aop_c --> h_c + ppbng_c + 2.0 h2o_c pep_c + co2_c + h2o_c --> oaa_c + h_c + pi_c 4ppcys_c + h_c --> pan4p_c + co2_c oaa_c + atp_c --> co2_c + pep_c + adp_c ppcoa_c + succ_c --> ppa_c + succoa_c h2o_c + ppgpp_c --> gdp_c + ppi_c ppi_c + atp_c <=> pppi_c + adp_c pi_c + atp_c <=> ppi_c + adp_c r1p_c <=> r5p_c 2dr1p_c <=> 2dr5p_c 4ppan_c + ctp_c + cys__L_c --> cmp_c + ppi_c + h_c + 4ppcys_c nad_c + pphn_c --> 34hpp_c + nadh_c + co2_c pphn_c + h_c --> phpyr_c + co2_c + h2o_c pppg9_c + 1.5 o2_c --> ppp9_c + 3.0 h2o_c 3.0 fum_c + pppg9_c --> ppp9_c + 3.0 succ_c nadh_c + h_c + o2_c + pppn_c --> nad_c + cechddd_c pppn_p + h_p <=> pppn_c + h_c pppn_e <=> pppn_p pyr_c + atp_c + h2o_c --> 2.0 h_c + amp_c + pi_c + pep_c ppt_p + h2o_p --> h2_p + pi_p ppt_e <=> ppt_p pram_c + gly_c + atp_c <=> gar_c + h_c + pi_c + adp_c fpram_c + atp_c --> air_c + 2.0 h_c + pi_c + adp_c pran_c --> 2cpr5p_c prbamp_c + h2o_c --> prfp_c 5aizc_c + asp__L_c + atp_c --> h_c + pi_c + 25aics_c + adp_c h2o_c + prbatp_c --> h_c + ppi_c + prbamp_c fgam_c + atp_c + h2o_c + gln__L_c --> fpram_c + h_c + pi_c + glu__L_c + adp_c prfp_c <=> prlp_c pro__L_c + fad_c --> 1pyr5c_c + fadh2_c + h_c progly_p + atp_c + h2o_c --> h_c + pi_c + adp_c + progly_c progly_e <=> progly_p trnapro_c + pro__L_c + atp_c --> protrna_c + ppi_c + amp_c pro__L_p + atp_c + h2o_c --> h_c + pro__L_c + pi_c + adp_c h_p + pro__L_p <=> pro__L_c + h_c pro__L_p + na1_p --> pro__L_c + na1_c pro__L_e <=> pro__L_p r5p_c + atp_c <=> amp_c + prpp_c + h_c h_p + psclys_p --> psclys_c + h_c psclys_e <=> psclys_p pep_c + skm5p_c <=> 3psme_c + pi_c ps120_c + h_c --> co2_c + pe120_c ps140_c + h_c --> pe140_c + co2_c ps141_c + h_c --> co2_c + pe141_c ps160_c + h_c --> co2_c + pe160_c h_c + ps161_c --> co2_c + pe161_c ps180_c + h_c --> pe180_c + co2_c ps181_c + h_c --> co2_c + pe181_c glu__L_c + 3php_c --> akg_c + pser__L_c pser__L_e <=> pser__L_p pser__L_c + h2o_c --> pi_c + ser__L_c pser__L_p + h2o_p --> ser__L_p + pi_p ser__L_c + cdpdddecg_c --> ps120_c + cmp_c + h_c cdpdtdecg_c + ser__L_c --> ps140_c + cmp_c + h_c ser__L_c + cdpdtdec7eg_c --> h_c + ps141_c + cmp_c cdpdhdecg_c + ser__L_c --> ps160_c + cmp_c + h_c cdpdhdec9eg_c + ser__L_c --> cmp_c + ps161_c + h_c cdpdodecg_c + ser__L_c --> ps180_c + cmp_c + h_c ser__L_c + cdpdodec11eg_c --> ps181_c + cmp_c + h_c pi_c + ppcoa_c --> ppap_c + coa_c pi_c + accoa_c <=> coa_c + actp_c thrp_p + h2o_p --> pi_p + thr__L_p pan4p_c + atp_c + h_c --> dpcoa_c + ppi_c orn_c + ptrc_p <=> ptrc_c + orn_p akg_c + ptrc_c --> glu__L_c + 4abutn_c ptrc_p + atp_c + h2o_c --> ptrc_c + h_c + pi_c + adp_c h_p + ptrc_p --> ptrc_c + h_c ptrc_e <=> ptrc_p pi_c + adn_c <=> ade_c + r1p_c pi_c + dad_2_c <=> 2dr1p_c + ade_c gsn_c + pi_c <=> r1p_c + gua_c dgsn_c + pi_c <=> 2dr1p_c + gua_c pi_c + ins_c <=> hxan_c + r1p_c pi_c + din_c <=> hxan_c + 2dr1p_c pi_c + xtsn_c <=> xan_c + r1p_c pyam5p_c + o2_c + h2o_c --> pydx5p_c + h2o2_c + nh4_c pydam_c + atp_c --> pyam5p_c + adp_c + h_c pydam_e <=> pydam_p pydam_p --> pydam_c pydx_c + atp_c --> pydx5p_c + adp_c + h_c pydxn_c + atp_c --> h_c + pdx5p_c + adp_c pydxn_e <=> pydxn_p pydxn_p --> pydxn_c pydx5p_c + h2o_c --> pydx_c + pi_c pydx_e <=> pydx_p pydx_p --> pydx_c pep_c + adp_c + h_c --> pyr_c + atp_c pi_c + uri_c <=> ura_c + r1p_c ura_c + h_c + nadh_c + o2_c --> nad_c + uracp_c h_p + pyr_p <=> pyr_c + h_c pyr_e <=> pyr_p 2.0 o2_c + q8h2_c --> q8_c + 2.0 h_c + 2.0 o2s_c 2.0 o2_c + mql8_c --> mqn8_c + 2.0 o2s_c + 2.0 h_c quin_e <=> quin_p quin_p <=> quin_c quin_c + nad_c <=> 3dhq_c + 2.0 h_c + nadh_c dhap_c + iasp_c --> pi_c + quln_c + 2.0 h2o_c atp_c + r15bp_c --> adp_c + prpp_c r1p_c + atp_c --> r15bp_c + adp_c + h_c r5p_c + h2o_c --> rib__D_c + pi_c r5p_p + h2o_p --> rib__D_p + pi_p r5p_e <=> r5p_p ribflv_c + atp_c --> h_c + fmn_c + adp_c 4r5au_c + db4p_c --> pi_c + 2.0 h2o_c + dmlz_c 2.0 dmlz_c --> 4r5au_c + ribflv_c rib__D_c + atp_c --> adp_c + r5p_c + h_c rbl__L_c + atp_c --> adp_c + ru5p__L_c + h_c ru5p__L_c <=> xu5p__D_c rephaccoa_c <=> 2oxpaccoa_c rfamp_e <=> rfamp_p rfamp_p + h_p --> rfamp_e + h_c dtdprmn_c + kphphhlipa_c --> dtdp_c + icolipa_c + h_c rhcys_c --> dhptd_c + hcys__L_c rib__D_p + atp_c + h2o_c --> rib__D_c + pi_c + h_c + adp_c rib__D_e <=> rib__D_p rmn_c <=> rml_c rml_c + atp_c --> rml1p_c + adp_c + h_c rmn_e <=> rmn_p h_p + rmn_p --> rmn_c + h_c rml1p_c <=> dhap_c + lald__L_c trdrd_c + adp_c --> trdox_c + dadp_c + h2o_c grxrd_c + adp_c --> dadp_c + grxox_c + h2o_c trdrd_c + gdp_c --> trdox_c + dgdp_c + h2o_c grxrd_c + gdp_c --> h2o_c + grxox_c + dgdp_c trdrd_c + cdp_c --> trdox_c + h2o_c + dcdp_c grxrd_c + cdp_c --> h2o_c + grxox_c + dcdp_c trdrd_c + udp_c --> trdox_c + dudp_c + h2o_c grxrd_c + udp_c --> dudp_c + grxox_c + h2o_c 2.0 h_c + 2.0 flxr_c + atp_c --> 2.0 flxso_c + datp_c + h2o_c gtp_c + 2.0 h_c + 2.0 flxr_c --> 2.0 flxso_c + dgtp_c + h2o_c ctp_c + 2.0 flxr_c + 2.0 h_c --> 2.0 flxso_c + dctp_c + h2o_c utp_c + 2.0 h_c + 2.0 flxr_c --> 2.0 flxso_c + dutp_c + h2o_c ru5p__D_c <=> xu5p__D_c r5p_c <=> ru5p__D_c 5prdmbz_c + h2o_c --> pi_c + rdmbzi_c sufbcd_c + h2o_c + 2fe1s_c + sufsesh_c + atp_c --> sufbcd_2fe2s_c + 5.0 h_c + sufse_c + pi_c + adp_c 2.0 fe2_c + 2.0 sufsesh_c + atp_c + h2o_c + sufbcd_c + fadh2_c --> 2.0 sufse_c + 7.0 h_c + pi_c + sufbcd_2fe2s_c + fad_c + adp_c 2.0 sufsesh_c + 2.0 fe2_c + atp_c + h2o_c + sufbcd_2fe2s_c + fadh2_c --> 2.0 sufse_c + 7.0 h_c + pi_c + sufbcd_2fe2s2_c + fad_c + adp_c sufbcd_2fe2s_c + 4.0 h_c --> 2fe2s_c + sufbcd_c sufbcd_2fe2s2_c + fadh2_c + 2.0 h_c --> sufbcd_4fe4s_c + fad_c sufbcd_4fe4s_c + 4.0 h_c --> 4fe4s_c + sufbcd_c s7p_c --> gmhep7p_c 2.0 h_c + sucarg_c + 2.0 h2o_c --> co2_c + 2.0 nh4_c + sucorn_c gtp_c + so4_c + atp_c + h2o_c --> gdp_c + ppi_c + pi_c + aps_c sarcs_c + o2_c + h2o_c --> fald_c + h2o2_c + gly_c nad_c + sbt6p_c <=> nadh_c + f6p_c + h_c sbt__D_p + pep_c --> pyr_c + sbt6p_c sbt__D_e <=> sbt__D_p sufse_c + cys__L_c --> ala__L_c + sufsesh_c h2o_c + sl26da_c --> 26dap_LL_c + succ_c akg_c + sl26da_c <=> sl2a6o_c + glu__L_c sertrna_sec_c + selnp_c --> pi_c + sectrna_c + h_c 4.0 gthrd_c + 2.0 h_c + slnt_c --> gthox_c + dgslnt_c + 3.0 h2o_c dgslnt_c + h_c + nadph_c --> gthrd_c + nadp_c + gslnt_c nadph_c + gslnt_c --> gthrd_c + seln_c + nadp_c seln_c + atp_c + h2o_c --> selnp_c + pi_c + amp_c mql8_c + sel_c --> mqn8_c + slnt_c + h2o_c sel_e <=> sel_p sel_p + 2.0 h_p --> sel_c + 2.0 h_c ichor_c + akg_c + h_c --> co2_c + 2sephchc_c atp_c + ser__L_c + h_c <=> ppi_c + seramp_c accoa_c + ser__L_c <=> acser_c + coa_c ser__D_c --> pyr_c + nh4_c ser__L_c --> pyr_c + nh4_c ser__L_c + trnaser_c + atp_c --> ppi_c + sertrna_c + amp_c ser__L_c + trnasecys_c + atp_c --> ppi_c + sertrna_sec_c + amp_c ser__L_p + h_p <=> ser__L_c + h_c ser__L_p + na1_p --> na1_c + ser__L_c ser__L_e <=> ser__L_p Sfglutth_c + h2o_c --> gthrd_c + h_c + for_c sucglu_c + h2o_c --> glu__L_c + succ_c sucgsa_c + nad_c + h2o_c --> 2.0 h_c + sucglu_c + nadh_c 2sephchc_c --> pyr_c + 2shchc_c nad_c + dscl_c --> nadh_c + scl_c + h_c scl_c + fe2_c --> sheme_c + 3.0 h_c 3dhsk_c + h_c + nadph_c <=> nadp_c + skm_c skm_c + atp_c --> adp_c + skm5p_c + h_c suchms_c + cys__L_c --> cyst__L_c + succ_c + h_c skm_p + h_p --> skm_c + h_c skm_e <=> skm_p slnt_e <=> slnt_p slnt_p + h_p --> slnt_c + h_c so2_e <=> so2_p so2_p <=> so2_c so3_e <=> so3_p h_p + so4_p --> h_c + so4_c so4_e <=> so4_p sucorn_c + akg_c --> glu__L_c + sucgsa_c spmd_c + accoa_c --> N1aspmd_c + coa_c + h_c spmd_c + accoa_c --> n8aspmd_c + coa_c + h_c spmd_p + atp_c + h2o_c --> h_c + spmd_c + adp_c + pi_c spmd_c + h_p --> spmd_p + h_c spmd_e <=> spmd_p ametam_c + ptrc_c --> spmd_c + 5mta_c + h_c 2.0 o2s_c + 2.0 h_c --> h2o2_c + o2_c 2.0 h_p + 2.0 o2s_p --> h2o2_p + o2_p nad_c + sucsal_c + h2o_c --> nadh_c + succ_c + 2.0 h_c nadp_c + sucsal_c + h2o_c --> succ_c + 2.0 h_c + nadph_c asp__L_p + succ_c --> succ_p + asp__L_c sucbz_c + coa_c + atp_c --> ppi_c + sbzcoa_c + amp_c 2shchc_c --> sucbz_c + h2o_c succ_p + 2.0 h_p --> succ_c + 2.0 h_c succ_p + 3.0 h_p --> succ_c + 3.0 h_c h_p + succ_c --> succ_p + h_c succ_e <=> succ_p q8_c + succ_c --> fum_c + q8h2_c fum_p + succ_c --> fum_c + succ_p succ_c + mal__L_p --> mal__L_c + succ_p succ_c + coa_c + atp_c <=> succoa_c + pi_c + adp_c sucr_e <=> sucr_p tartr__D_p + succ_c --> succ_p + tartr__D_c pep_c + sucr_p --> suc6p_c + pyr_c sulfac_p + h2o_c + atp_c --> sulfac_c + h_c + pi_c + adp_c sulfac_e <=> sulfac_p so3_c + 5.0 h_c + 3.0 nadph_c --> h2s_c + 3.0 nadp_c + 3.0 h2o_c so4_p + atp_c + h2o_c --> so4_c + pi_c + h_c + adp_c tdec2eACP_c <=> cdec3eACP_c nad_c + altrn_c <=> h_c + nadh_c + tagur_c s7p_c + g3p_c <=> e4p_c + f6p_c tartr__L_c --> oaa_c + h2o_c tartr__D_e <=> tartr__D_p tartr__L_p + succ_c <=> succ_p + tartr__L_c tartr__L_e <=> tartr__L_p 3.0 h_p + tartr__D_p --> tartr__D_c + 3.0 h_c taur_c + akg_c + o2_c --> succ_c + co2_c + so3_c + h_c + aacald_c taur_p + atp_c + h2o_c --> taur_c + h_c + pi_c + adp_c taur_e <=> taur_p tcynt_e <=> tcynt_p h2o_c + thmpp_c --> pi_c + h_c + thmmp_c dtdp4addg_c + accoa_c --> dtdp4aaddg_c + coa_c + h_c dtdp4d6dg_c + glu__L_c --> dtdp4addg_c + akg_c dtdp4d6dg_c --> dtdp4d6dm_c dtdp4d6dm_c + nadph_c + h_c --> dtdprmn_c + nadp_c dtdpglu_c --> dtdp4d6dg_c + h2o_c lipidAds_c + atp_c --> h_c + adp_c + lipidA_c dsbdrd_c + dsbcox_p --> dsbcrd_p + dsbdox_c dsbdrd_c + dsbgox_p --> dsbgrd_p + dsbdox_c tagdp__D_c <=> dhap_c + g3p_c nadp_c + nadh_c + 2.0 h_p --> 2.0 h_c + nad_c + nadph_c thdp_c + succoa_c + h2o_c --> sl2a6o_c + coa_c methf_c + h2o_c --> 5fthf_c + h_c h2o2_c + trdrd_c --> trdox_c + 2.0 h2o_c thymd_p + h_p --> thymd_c + h_c thymd_p + h_p <=> thymd_c + h_c thymd_e <=> thymd_p h2o_c + atp_c + thm_p --> thm_c + h_c + pi_c + adp_c thm_e <=> thm_p athr__L_c --> gly_c + acald_c thr__L_c --> gly_c + acald_c nad_c + thr__L_c --> 2aobut_c + nadh_c + h_c thr__L_c --> 2obut_c + nh4_c thrp_e <=> thrp_p phom_c + h2o_c --> pi_c + thr__L_c trnathr_c + thr__L_c + atp_c --> ppi_c + thrtrna_c + amp_c thr__L_p + atp_c + h2o_c --> thr__L_c + h_c + pi_c + adp_c thr__L_c + h_p --> thr__L_p + h_c h_p + thr__L_p <=> thr__L_c + h_c thr__L_p + na1_p --> thr__L_c + na1_c thr__L_e <=> thr__L_p thym_c + h_p --> thym_p + h_c thym_e <=> thym_p nadph_c + dxyl5p_c + iscssh_c + atp_c + dhgly_c + h_c --> ppi_c + co2_c + amp_c + nadp_c + iscs_c + 2.0 h2o_c + 4mpetz_c xu5p__D_c + r5p_c <=> s7p_c + g3p_c xu5p__D_c + e4p_c <=> g3p_c + f6p_c tmao_c + h_c + mql8_c --> mqn8_c + h2o_c + tma_c tmao_p + mql8_c + h_p --> tma_p + h2o_p + mqn8_c tmao_c + h_c + 2dmmql8_c --> h2o_c + 2dmmq8_c + tma_c 2dmmql8_c + tmao_p + h_p --> tma_p + h2o_p + 2dmmq8_c tmao_e <=> tmao_p tma_e <=> tma_p thymd_c + atp_c --> adp_c + dtmp_c + h_c pi_c + thymd_c <=> 2dr1p_c + thym_c dump_c + mlthf_c --> dhf_c + dtmp_c thm_c + atp_c --> adp_c + thmmp_c + h_c thmmp_c + atp_c --> thmpp_c + adp_c 2mahmp_c + 4mpetz_c + h_c --> thmmp_c + ppi_c dhap_c <=> g3p_c dpcoa_c + atp_c --> 2tpr3dpcoa_c + ade_c trdox_c + nadph_c + h_c --> trdrd_c + nadp_c tre6p_c + h2o_c --> glc__D_c + g6p_c tre6p_c + h2o_c --> pi_c + tre_c g6p_c + udpg_c --> tre6p_c + udp_c + h_c h2o_c + tre_c --> 2.0 glc__D_c tre_p + h2o_p --> 2.0 glc__D_p tre_p + pep_c --> tre6p_c + pyr_c tre_e <=> tre_p trp__L_c + h2o_c <=> indole_c + pyr_c + nh4_c 3ig3p_c + ser__L_c --> g3p_c + trp__L_c + h2o_c indole_c + ser__L_c --> trp__L_c + h2o_c 3ig3p_c --> indole_c + g3p_c trp__L_c + trnatrp_c + atp_c --> trptrna_c + ppi_c + amp_c trp__L_p + h_p <=> trp__L_c + h_c trp__L_e <=> trp__L_p nadh_c + 2h3oppan_c + h_c <=> nad_c + glyc__R_c tsul_p + atp_c + h2o_c --> h_c + pi_c + adp_c + tsul_c tsul_e <=> tsul_p ttdca_e --> ttdca_p ttdcea_e --> ttdcea_p ttrcyc_e <=> ttrcyc_p h_p + ttrcyc_p --> ttrcyc_e + h_c tungs_p + atp_c + h2o_c --> h_c + tungs_c + pi_c + adp_c tungs_e <=> tungs_p tym_e <=> tym_p amet_c + nadph_c + tyr__L_c --> met__L_c + nadp_c + dhgly_c + 4crsol_c + dad_5_c + h_c tym_p + h2o_p + o2_p --> 4hoxpacd_p + nh4_p + h2o2_p h2o_p + tyrp_p --> tyr__L_p + pi_p tyrp_e <=> tyrp_p akg_c + tyr__L_c <=> 34hpp_c + glu__L_c trnatyr_c + tyr__L_c + atp_c --> tyrtrna_c + ppi_c + amp_c tyr__L_p + h_p <=> tyr__L_c + h_c tyr__L_e <=> tyr__L_p thmpp_c + adp_c + h_c --> pi_c + athtp_c u3hga_c + 3hmrsACP_c --> ACP_c + u23ga_c + h_c uamag_c + atp_c + 26dap__M_c --> ugmd_c + h_c + pi_c + adp_c h2o_p + udpacgal_p --> acgal1p_p + 2.0 h_p + ump_p uacgam_p + h2o_p --> acgam1p_p + 2.0 h_p + ump_p uacgam_e <=> uacgam_p 2.0 nad_c + uacmam_c + h2o_c --> 2.0 nadh_c + uacmamu_c + 3.0 h_c uacgam_c <=> uacmam_c 3hmrsACP_c + uacgam_c <=> u3aga_c + ACP_c pep_c + uacgam_c --> pi_c + uaccg_c acgam1p_c + utp_c + h_c --> uacgam_c + ppi_c uacgam_c + uagmda_c --> uaagmda_c + udp_c + h_c glu__D_c + uama_c + atp_c --> uamag_c + h_c + pi_c + adp_c ala__L_c + uamr_c + atp_c --> h_c + pi_c + uama_c + adp_c uaccg_c + nadph_c + h_c --> nadp_c + uamr_c udcpdp_c + h2o_c --> udcpp_c + pi_c + h_c frdp_c + 8.0 ipdp_c --> udcpdp_c + 8.0 ppi_c udcpdp_p + h2o_p --> pi_p + udcpp_p + h_p udcpp_p --> udcpp_c udpacgal_e <=> udpacgal_p udpg_c <=> udpgal_c udpgal_c --> udpgalfur_c udpgal_p + h2o_p --> 2.0 h_p + ump_p + gal1p_p udpgal_e <=> udpgal_p 2.0 nad_c + udpg_c + h2o_c --> 3.0 h_c + 2.0 nadh_c + udpglcur_c nad_c + udpglcur_c --> udpLa4o_c + nadh_c + co2_c udpglcur_e <=> udpglcur_p udpg_p + h2o_p --> g1p_p + 2.0 h_p + ump_p udpg_e <=> udpg_p udpLa4o_c + glu__L_c <=> udpLa4n_c + akg_c udpglcur_p + h2o_p --> glcur1p_p + 2.0 h_p + ump_p gal1p_c + udpg_c <=> g1p_c + udpgal_c 2.0 h_c + urdglyc_c + h2o_c --> co2_c + 2.0 nh4_c + glx_c ugmd_c + alaala_c + atp_c --> h_c + ugmda_c + pi_c + adp_c u3aga_c + h2o_c --> u3hga_c + ac_c 10fthf_c + udpLa4n_c --> udpLa4fn_c + thf_c + h_c uLa4n_c --> uLa4n_p uamr_c + LalaDgluMdap_c + atp_c --> ugmd_c + h_c + pi_c + adp_c h2o_c + um4p_c --> ugmd_c + ala__D_c uamr_c + LalaDgluMdapDala_c + atp_c --> um4p_c + h_c + pi_c + adp_c ump_c + atp_c <=> udp_c + adp_c ump_e <=> ump_p uLa4fn_c + h2o_c --> uLa4n_c + for_c udpLa4fn_c + udcpp_c --> udp_c + uLa4fn_c 2.0 amet_c + uppg3_c --> 2.0 ahcys_c + h_c + dscl_c hmbil_c --> h2o_c + uppg3_c uppg3_c + 4.0 h_c --> cpppg3_c + 4.0 co2_c ura_c + prpp_c --> ump_c + ppi_c uracp_c + h2o_c --> h_c + cbm_c + poaac_c ura_p + h_p --> ura_c + h_c ura_p + h_p <=> ura_c + h_c ura_e <=> ura_p urdglyc_c + nad_c --> nadh_c + oxur_c + h_c urea_e <=> urea_p urea_p <=> urea_c urate_c + o2_c + 2.0 h2o_c --> alltn_c + co2_c + h2o2_c uri_c + h2o_c --> rib__D_c + ura_c uri_c + gtp_c --> ump_c + gdp_c + h_c h_p + uri_p --> h_c + uri_c h_p + uri_p <=> h_c + uri_c uri_e <=> uri_p u23ga_c + h2o_c --> lipidX_c + ump_c + 2.0 h_c akg_c + val__L_c <=> 3mob_c + glu__L_c trnaval_c + atp_c + val__L_c --> ppi_c + amp_c + valtrna_c val__L_p + h2o_c + atp_c --> h_c + pi_c + adp_c + val__L_c h_p + val__L_p <=> h_c + val__L_c val__L_e <=> val__L_p ala__L_c + 3mob_c <=> pyr_c + val__L_c mptamp_c + 2.0 h_c + tungs_c --> wco_c + amp_c + cu2_c + h2o_c xu5p__L_c --> ru5p__L_c xan_c + nad_c + h2o_c --> nadh_c + h_c + urate_c h_p + xan_p --> xan_c + h_c xan_e <=> xan_p xan_p <=> xan_c xmp_e <=> xmp_p xan_c + prpp_c --> xmp_c + ppi_c xtsn_c + h2o_c --> xan_c + rib__D_c h_p + xtsn_p <=> h_c + xtsn_c xtsn_e <=> xtsn_p xyl__D_c <=> xylu__D_c glc__D_c <=> fru_c xylu__D_c + atp_c --> xu5p__D_c + adp_c + h_c xylu__L_c + atp_c --> xu5p__L_c + adp_c + h_c h_p + xylu__L_p --> xylu__L_c + h_c xylu__L_e <=> xylu__L_p xyl__D_p + atp_c + h2o_c --> xyl__D_c + pi_c + h_c + adp_c xyl__D_p + h_p --> h_c + xyl__D_c xyl__D_e <=> xyl__D_p h2o_c + zn2_c + atp_c --> adp_c + h_c + pi_c + zn2_p h_p + zn2_c --> h_c + zn2_p zn2_p --> zn2_c h2o_c + atp_c + zn2_p --> adp_c + h_c + pi_c + zn2_c zn2_e <=> zn2_p | \n",
"
\n", " | fluxes | \n", "reduced_costs | \n", "
---|---|---|
DM_4crsol_c | \n", "0.000219 | \n", "0.000000e+00 | \n", "
DM_5drib_c | \n", "0.000221 | \n", "-3.775930e-24 | \n", "
DM_aacald_c | \n", "0.000000 | \n", "0.000000e+00 | \n", "
DM_amob_c | \n", "0.000002 | \n", "4.867441e-23 | \n", "
... | \n", "... | \n", "... | \n", "
ZN2t3pp | \n", "0.000000 | \n", "-2.073827e-03 | \n", "
ZN2tpp | \n", "0.000335 | \n", "0.000000e+00 | \n", "
ZNabcpp | \n", "0.000000 | \n", "-8.295308e-03 | \n", "
Zn2tex | \n", "0.000335 | \n", "0.000000e+00 | \n", "
2583 rows × 2 columns
\n", "\n", " | fluxes | \n", "reduced_costs | \n", "
---|---|---|
DM_4crsol_c | \n", "0.000219 | \n", "0.000000e+00 | \n", "
DM_5drib_c | \n", "0.000221 | \n", "-3.775930e-24 | \n", "
DM_aacald_c | \n", "0.000000 | \n", "0.000000e+00 | \n", "
DM_amob_c | \n", "0.000002 | \n", "4.867441e-23 | \n", "
... | \n", "... | \n", "... | \n", "
ZN2t3pp | \n", "0.000000 | \n", "-2.073827e-03 | \n", "
ZN2tpp | \n", "0.000335 | \n", "0.000000e+00 | \n", "
ZNabcpp | \n", "0.000000 | \n", "-8.295308e-03 | \n", "
Zn2tex | \n", "0.000335 | \n", "0.000000e+00 | \n", "
2583 rows × 2 columns
\n", "\n", " | fluxes | \n", "reduced_costs | \n", "
---|---|---|
DM_4crsol_c | \n", "0.000219 | \n", "0.000000e+00 | \n", "
DM_5drib_c | \n", "0.000221 | \n", "-3.775930e-24 | \n", "
DM_amob_c | \n", "0.000002 | \n", "4.867441e-23 | \n", "
DM_mththf_c | \n", "0.000440 | \n", "0.000000e+00 | \n", "
... | \n", "... | \n", "... | \n", "
USHD | \n", "0.019113 | \n", "7.372575e-18 | \n", "
VALTA | \n", "-0.415702 | \n", "-0.000000e+00 | \n", "
ZN2tpp | \n", "0.000335 | \n", "0.000000e+00 | \n", "
Zn2tex | \n", "0.000335 | \n", "0.000000e+00 | \n", "
461 rows × 2 columns
\n", "Id | PGK | \n", "
Name | Phosphoglycerate kinase | \n", "
Stoichiometry | 3pg_c + atp_c <=> 13dpg_c + adp_c | \n", "
Lower bound | -1000.000000 | \n", "
Upper bound | 1000.000000 | \n", "
Id | E4PD | \n", "
Name | Erythrose 4-phosphate dehydrogenase | \n", "
Stoichiometry | e4p_c + nad_c + h2o_c <=> nadh_c + 2.0 h_c + 4per_c | \n", "
Lower bound | -1000.000000 | \n", "
Upper bound | 1000.000000 | \n", "
Id | 12DGR120tipp | \n", "
Name | 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0) | \n", "
Stoichiometry | 12dgr120_p --> 12dgr120_c | \n", "
Lower bound | 0.000000 | \n", "
Upper bound | 1000.000000 | \n", "
\n", " | reaction_id | \n", "reaction_name | \n", "lower_bound | \n", "upper_bound | \n", "
---|---|---|---|---|
0 | \n", "EX_ca2_e | \n", "Calcium exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
1 | \n", "EX_cbl1_e | \n", "Cob(I)alamin exchange | \n", "-0.01 | \n", "1000.0 | \n", "
2 | \n", "EX_cl_e | \n", "Chloride exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
3 | \n", "EX_co2_e | \n", "CO2 exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
21 | \n", "EX_slnt_e | \n", "Selenite exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
22 | \n", "EX_so4_e | \n", "Sulfate exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
23 | \n", "EX_tungs_e | \n", "Tungstate exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
24 | \n", "EX_zn2_e | \n", "Zinc exchange | \n", "-1000.00 | \n", "1000.0 | \n", "
25 rows × 4 columns
\n", "