\n",
" \n",
" 0 | \n",
" 1 | \n",
" iJR904 | \n",
" 10.1186/gb-2003-4-9-r54 | \n",
" Reed | \n",
" 2003 | \n",
" [sbml] | \n",
" Escherichia coli str. K12 substr. MG1655 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 1 | \n",
" 2 | \n",
" iAF1260 | \n",
" 10.1038/msb4100155 | \n",
" Feist | \n",
" 2007 | \n",
" [sbml] | \n",
" Escherichia coli str. K12 substr. MG1655 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 2 | \n",
" 3 | \n",
" iMM904 | \n",
" 10.1186/1752-0509-3-37 | \n",
" Mo | \n",
" 2007 | \n",
" [sbml] | \n",
" Saccharomyces cerevisiae | \n",
" Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... | \n",
" True | \n",
"
\n",
" \n",
" 3 | \n",
" 4 | \n",
" iJP815 | \n",
" 10.1371/journal.pcbi.1000210 | \n",
" Puchalka | \n",
" 2008 | \n",
" [sbml] | \n",
" Pseudomonas putida str. KT2440 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 4 | \n",
" 5 | \n",
" iMO1056 | \n",
" 10.1128/JB.01583-07 | \n",
" Oberhardt | \n",
" 2008 | \n",
" [excel] | \n",
" Pseudomonas aeruginosa str. PAO1 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" False | \n",
"
\n",
" \n",
" 5 | \n",
" 6 | \n",
" iIN800 | \n",
" 10.1186/1752-0509-2-71 | \n",
" Nookaew | \n",
" 2008 | \n",
" [sbml] | \n",
" Saccharomyces cerevisiae | \n",
" Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... | \n",
" False | \n",
"
\n",
" \n",
" 6 | \n",
" 7 | \n",
" iFF708 | \n",
" 10.1101/gr.234503 | \n",
" Förster | \n",
" 2003 | \n",
" [sbml] | \n",
" Saccharomyces cerevisiae str. Sc288 | \n",
" Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... | \n",
" False | \n",
"
\n",
" \n",
" 7 | \n",
" 8 | \n",
" iCA1273 | \n",
" 10.1186/1471-2164-12-9 | \n",
" Archer | \n",
" 2011 | \n",
" [sbml] | \n",
" Escherichia coli W | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 8 | \n",
" 9 | \n",
" iJO1366 | \n",
" 10.1038/msb.2011.65 | \n",
" Orth | \n",
" 2011 | \n",
" [sbml] | \n",
" Escherichia coli str. K12 substr. MG1655 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 9 | \n",
" 10 | \n",
" yeast 4.0 | \n",
" 10.1186/1752-0509-4-145 | \n",
" Dobson | \n",
" 2010 | \n",
" [] | \n",
" Yeast | \n",
" Eukaryota; Opisthokonta; Fungi; | \n",
" False | \n",
"
\n",
" \n",
" 10 | \n",
" 11 | \n",
" iJN746 | \n",
" 10.1186/1752-0509-2-79 | \n",
" Nogales | \n",
" 2008 | \n",
" [sbml] | \n",
" Pseudomonas putida str. KT2440 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 11 | \n",
" 12 | \n",
" AbyMBEL891 | \n",
" 10.1039/B916446D | \n",
" Kim | \n",
" 2010 | \n",
" [sbml] | \n",
" Acinetobacter baumannii AYE | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" False | \n",
"
\n",
" \n",
" 12 | \n",
" 13 | \n",
" iJP962 | \n",
" 10.1371/journal.pcbi.1001116 | \n",
" Oberhardt | \n",
" 2011 | \n",
" [sbml] | \n",
" Pseudomonas putida str. KT2440 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 13 | \n",
" 14 | \n",
" iYL1228 | \n",
" 10.1128/JB.01218-10 | \n",
" Liao | \n",
" 2011 | \n",
" [sbml] | \n",
" Klebsiella pneumoniae str. MGH 78578 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 14 | \n",
" 15 | \n",
" iSR432 | \n",
" 10.1186/1752-0509-4-31 | \n",
" Roberts | \n",
" 2010 | \n",
" [sbml] | \n",
" Clostridium thermocellum str. ATCC 27405 | \n",
" Bacteria; Firmicutes; Clostridia; Clostridial... | \n",
" True | \n",
"
\n",
" \n",
" 15 | \n",
" 16 | \n",
" iNJ661m | \n",
" 10.1186/1752-0509-4-160 | \n",
" Fang | \n",
" 2010 | \n",
" [sbml] | \n",
" Mycobacterium tuberculosis str. H37Rv | \n",
" Bacteria; Actinobacteria; Actinobacteria; Acti... | \n",
" True | \n",
"
\n",
" \n",
" 16 | \n",
" 17 | \n",
" iCM925 | \n",
" 10.1186/1752-0509-5-130 | \n",
" Milne | \n",
" 2011 | \n",
" [sbml] | \n",
" Clostridium beijerinckii str. NCIMB 8052 | \n",
" Bacteria; Firmicutes; Clostridia; Clostridiale... | \n",
" True | \n",
"
\n",
" \n",
" 17 | \n",
" 18 | \n",
" iBsu1103 | \n",
" 10.1186/gb-2009-10-6-r69 | \n",
" Henry | \n",
" 2009 | \n",
" [sbml] | \n",
" Bacillus subtilis 168 | \n",
" Bacteria; Firmicutes; Bacilli; Bacillales; Bac... | \n",
" True | \n",
"
\n",
" \n",
" 18 | \n",
" 19 | \n",
" iAI549 | \n",
" 10.1371/journal.pcbi.1000887 | \n",
" Islam | \n",
" 2010 | \n",
" [sbml] | \n",
" Dehalococcoides ethenogenes str. 2061 | \n",
" Bacteria; Chloroflexi; Dehalococcoidetes; Deha... | \n",
" True | \n",
"
\n",
" \n",
" 19 | \n",
" 20 | \n",
" iAF692 | \n",
" 10.1038/msb4100046 | \n",
" Feist | \n",
" 2006 | \n",
" [sbml] | \n",
" Methanosarcina barkeri | \n",
" Archaea; Euryarchaeota; Methanomicrobia; Metha... | \n",
" True | \n",
"
\n",
" \n",
" 20 | \n",
" 21 | \n",
" AraGEM | \n",
" 10.1186/1471-2164-12-S4-S5 | \n",
" de Oliveira Dal'Molin | \n",
" 2010 | \n",
" [sbml] | \n",
" Arabidopsis thaliana | \n",
" Eukaryota; Viridiplantae; Streptophyta; Strept... | \n",
" True | \n",
"
\n",
" \n",
" 21 | \n",
" 22 | \n",
" Ecoli core Model | \n",
" doi:10.1128/ecosalplus.10.2.1 | \n",
" Orth | \n",
" 2010 | \n",
" [sbml] | \n",
" Escherichia coli str. K12 substr. MG1655 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" True | \n",
"
\n",
" \n",
" 22 | \n",
" 23 | \n",
" iIT341 | \n",
" 10.1128/JB.187.16.5818-5830.2005 | \n",
" Thiele | \n",
" 2005 | \n",
" [sbml] | \n",
" Helicobacter pylori str. 26695 | \n",
" Bacteria; Proteobacteria; delta/epsilon subdi... | \n",
" True | \n",
"
\n",
" \n",
" 23 | \n",
" 24 | \n",
" iMH805/775 | \n",
" 10.1038/nbt1492 | \n",
" Herrgård | \n",
" 2008 | \n",
" [sbml] | \n",
" Saccharomyces cerevisiae str. Sc288 | \n",
" Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... | \n",
" False | \n",
"
\n",
" \n",
" 24 | \n",
" 25 | \n",
" iND750 | \n",
" 10.1101/gr.2250904 | \n",
" Duarte | \n",
" 2004 | \n",
" [sbml] | \n",
" Saccharomyces cerevisiae str. Sc288 | \n",
" Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... | \n",
" True | \n",
"
\n",
" \n",
" 25 | \n",
" 26 | \n",
" iRC1080 | \n",
" 10.1038/msb.2011.52 | \n",
" Chang | \n",
" 2011 | \n",
" [sbml] | \n",
" Chlamydomonas reinhardtii | \n",
" Eukaryota; Viridiplantae; Chlorophyta; Chlorop... | \n",
" True | \n",
"
\n",
" \n",
" 26 | \n",
" 27 | \n",
" iSB619 | \n",
" 10.1186/1471-2180-5-8 | \n",
" Becker | \n",
" 2005 | \n",
" [sbml] | \n",
" Staphylococcus aureus | \n",
" Bacteria; Firmicutes; Bacilli; Bacillales; St... | \n",
" True | \n",
"
\n",
" \n",
" 27 | \n",
" 28 | \n",
" iTH366 | \n",
" 10.1038/msb.2010.60 | \n",
" Plata | \n",
" 2010 | \n",
" [sbml] | \n",
" Plasmodium falciparum | \n",
" Eukaryota; Alveolata; Apicomplexa; Aconoidasid... | \n",
" True | \n",
"
\n",
" \n",
" 28 | \n",
" 29 | \n",
" iTZ479 | \n",
" 10.1126/science.1174671 | \n",
" Zhang | \n",
" 2009 | \n",
" [sbml] | \n",
" Thermotoga maritima str. MSB8 | \n",
" Bacteria; Thermotogae; Thermotogae; Thermotoga... | \n",
" True | \n",
"
\n",
" \n",
" 29 | \n",
" 30 | \n",
" recon2 | \n",
" 10.1038/nbt.2488 | \n",
" Thiele | \n",
" 2013 | \n",
" [sbml] | \n",
" Homo sapiens | \n",
" Eukaryota; Opisthokonta; Metazoa; Eumetazoa; B... | \n",
" True | \n",
"
\n",
" \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
" ... | \n",
"
\n",
" \n",
" 118 | \n",
" 123 | \n",
" iCyc792 | \n",
" 10.1186/1752-0509-7-142 | \n",
" Mueller | \n",
" 2013 | \n",
" [sbml, excel] | \n",
" Cyanothece sp. PCC 7424 | \n",
" Bacteria; Cyanobacteria; Oscillatoriophycideae... | \n",
" False | \n",
"
\n",
" \n",
" 119 | \n",
" 124 | \n",
" iCyn731 | \n",
" 10.1186/1752-0509-7-142 | \n",
" Mueller | \n",
" 2013 | \n",
" [sbml, excel] | \n",
" Cyanothece sp. PCC 7425 | \n",
" Bacteria; Cyanobacteria; Oscillatoriophycideae... | \n",
" False | \n",
"
\n",
" \n",
" 120 | \n",
" 125 | \n",
" iCyj826 | \n",
" 10.1186/1752-0509-7-142 | \n",
" Mueller | \n",
" 2013 | \n",
" [sbml, excel] | \n",
" Cyanothece sp. PCC 7822 | \n",
" Bacteria; Cyanobacteria; Oscillatoriophycideae... | \n",
" False | \n",
"
\n",
" \n",
" 121 | \n",
" 126 | \n",
" iCyp752 | \n",
" 10.1186/1752-0509-7-142 | \n",
" Mueller | \n",
" 2013 | \n",
" [sbml, excel] | \n",
" Cyanothece sp. PCC 8801 | \n",
" Bacteria; Cyanobacteria; Oscillatoriophycideae... | \n",
" False | \n",
"
\n",
" \n",
" 122 | \n",
" 127 | \n",
" iCyh755 | \n",
" 10.1186/1752-0509-7-142 | \n",
" Mueller | \n",
" 2013 | \n",
" [sbml, excel] | \n",
" Cyanothece sp. PCC 8802 | \n",
" Bacteria; Cyanobacteria; Oscillatoriophycideae... | \n",
" False | \n",
"
\n",
" \n",
" 123 | \n",
" 128 | \n",
" iNF518 | \n",
" 10.1007/s00253-013-5140-2 | \n",
" Flahaut | \n",
" 2013 | \n",
" [sbml] | \n",
" Lactococcus lactis subsp. cremoris MG1363 | \n",
" Bacteria; Firmicutes; Bacilli; Lactobacillales... | \n",
" True | \n",
"
\n",
" \n",
" 124 | \n",
" 129 | \n",
" iJL1454 | \n",
" 10.1039/C3MB70090A | \n",
" Jie Liu | \n",
" 2013 | \n",
" [excel] | \n",
" Aspergillus terreus NIH2624 | \n",
" Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... | \n",
" False | \n",
"
\n",
" \n",
" 125 | \n",
" 130 | \n",
" iBif452 | \n",
" 10.1186/1752-0509-8-41 | \n",
" El-Semman | \n",
" 2014 | \n",
" [sbml, excel] | \n",
" Bifidobacterium adolescentis L2-32 | \n",
" Bacteria; Actinobacteria; Actinobacteria; Acti... | \n",
" False | \n",
"
\n",
" \n",
" 126 | \n",
" 131 | \n",
" iFap484 | \n",
" 10.1186/1752-0509-8-41 | \n",
" El-Semman | \n",
" 2014 | \n",
" [sbml, excel] | \n",
" Faecalibacterium prausnitzii A2-165 | \n",
" Bacteria; Firmicutes; Clostridia; Clostridiale... | \n",
" False | \n",
"
\n",
" \n",
" 127 | \n",
" 132 | \n",
" iAM388 | \n",
" 10.1186/1471-2164-12-535 | \n",
" Aline Metris | \n",
" 2011 | \n",
" [excel] | \n",
" Campylobacter jejuni subsp. jejuni NCTC 11168 | \n",
" Bacteria; Proteobacteria; delta/epsilon subdiv... | \n",
" False | \n",
"
\n",
" \n",
" 128 | \n",
" 133 | \n",
" iTT548 | \n",
" 10.1186/1475-2859-13-61 | \n",
" Na-Rae Lee | \n",
" 2014 | \n",
" [sbml, excel] | \n",
" Thermus thermophilus | \n",
" Bacteria; Deinococcus-Thermus; Deinococci; The... | \n",
" True | \n",
"
\n",
" \n",
" 129 | \n",
" 134 | \n",
" EctoGEM-1.0 | \n",
" 10.1111/tpj.12627 | \n",
" Prigent | \n",
" 2014 | \n",
" [sbml] | \n",
" Ectocarpus siliculosus | \n",
" Eukaryota; Stramenopiles; PX clade; Phaeophyce... | \n",
" False | \n",
"
\n",
" \n",
" 130 | \n",
" 135 | \n",
" iMF721 | \n",
" 10.1111/1462-2920.12513 | \n",
" Fondi | \n",
" 2014 | \n",
" [sbml] | \n",
" Pseudoalteromonas haloplanktis TAC125 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" False | \n",
"
\n",
" \n",
" 131 | \n",
" 136 | \n",
" Arabidopsis core model | \n",
" 10.1104/pp.114.235358 | \n",
" Arnold | \n",
" 2014 | \n",
" [sbml] | \n",
" Arabidopsis thaliana | \n",
" Eukaryota; Viridiplantae; Streptophyta; Strept... | \n",
" False | \n",
"
\n",
" \n",
" 132 | \n",
" 137 | \n",
" iHN637 | \n",
" 10.1186/1475-2859-12-118 | \n",
" Harish Nagarajan | \n",
" 2013 | \n",
" [excel] | \n",
" Clostridium ljungdahlii | \n",
" Bacteria; Firmicutes; Clostridia; Clostridiale... | \n",
" False | \n",
"
\n",
" \n",
" 133 | \n",
" 138 | \n",
" iCac802 | \n",
" 10.1186/s13068-014-0144-4 | \n",
" Satyakam Dash | \n",
" 2014 | \n",
" [sbml] | \n",
" Clostridium acetobutylicum ATCC 824 | \n",
" Bacteria; Firmicutes; Clostridia; Clostridiale... | \n",
" True | \n",
"
\n",
" \n",
" 134 | \n",
" 139 | \n",
" iMLTC806cdf | \n",
" 10.1186/s12918-014-0117-z | \n",
" M. Larocque | \n",
" 2014 | \n",
" [sbml, excel] | \n",
" Clostridium difficile 630 | \n",
" Bacteria; Firmicutes; Clostridia; Clostridiale... | \n",
" True | \n",
"
\n",
" \n",
" 135 | \n",
" 140 | \n",
" iCY1106 | \n",
" 10.1186/s12918-014-0137-8 | \n",
" Chao Ye | \n",
" 2015 | \n",
" [sbml] | \n",
" Mortierella alpina | \n",
" Eukaryota; Opisthokonta; Fungi; Fungi incertae... | \n",
" False | \n",
"
\n",
" \n",
" 136 | \n",
" 141 | \n",
" iMM518 | \n",
" 10.1039/c3mb70421a | \n",
" N. Goyal | \n",
" 2014 | \n",
" [excel] | \n",
" Methanococcus maripaludis S2 | \n",
" Archaea; Euryarchaeota; Methanococci; Methanoc... | \n",
" False | \n",
"
\n",
" \n",
" 137 | \n",
" 142 | \n",
" iPC1209 | \n",
" 10.1016/j.febslet.2014.12.010 | \n",
" Cheng Wang | \n",
" 2015 | \n",
" [] | \n",
" Pectobacterium carotovorum subsp. carotovorum PC1 | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" False | \n",
"
\n",
" \n",
" 138 | \n",
" 143 | \n",
" iNV706 | \n",
" 10.1128/AEM.03279-14 | \n",
" N. Veith | \n",
" 2014 | \n",
" [] | \n",
" Enterococcus faecalis V583 | \n",
" Bacteria; Firmicutes; Bacilli; Lactobacillales... | \n",
" False | \n",
"
\n",
" \n",
" 139 | \n",
" 144 | \n",
" KoxGSC1457 | \n",
" 10.1186/1475-2859-12-20 | \n",
" J. Park | \n",
" 2013 | \n",
" [] | \n",
" Klebsiella oxytoca | \n",
" Bacteria; Proteobacteria; Gammaproteobacteria;... | \n",
" False | \n",
"
\n",
" \n",
" 140 | \n",
" 145 | \n",
" iJL846 | \n",
" 10.1016/j.gene.2014.10.034 | \n",
" Jie Liu | \n",
" 2015 | \n",
" [] | \n",
" Lactobacillus casei LC2W | \n",
" Bacteria; Firmicutes; Bacilli; Lactobacillales... | \n",
" False | \n",
"
\n",
" \n",
" 141 | \n",
" 146 | \n",
" yeast 7.6 | \n",
" 10.1089/ind.2013.0013 | \n",
" Aung (updated) | \n",
" 2015 | \n",
" [sbml] | \n",
" Yeast | \n",
" Eukaryota; Opisthokonta; Fungi; | \n",
" False | \n",
"
\n",
" \n",
" 142 | \n",
" 147 | \n",
" iJK849 | \n",
" 10.1111/tpj.13081 | \n",
" Joomi Kim | \n",
" 2015 | \n",
" [sbml, excel] | \n",
" Phaeodactylum tricornutum | \n",
" Eukaryota; Stramenopiles; Bacillariophyta; Bac... | \n",
" True | \n",
"
\n",
" \n",
" 143 | \n",
" 148 | \n",
" iNL895 | \n",
" 10.1186/1752-0509-6-35 | \n",
" Nicolas Loira | \n",
" 2012 | \n",
" [sbml] | \n",
" Yarrowia lipolytica | \n",
" Eukaryota; Fungi; Dikarya; Ascomycota; Sacchar... | \n",
" False | \n",
"
\n",
" \n",
" 144 | \n",
" 149 | \n",
" iYali4 | \n",
" 10.1038/npjsba.2016.5 | \n",
" Kerkhoven | \n",
" 2016 | \n",
" [sbml] | \n",
" Yarrowia lipolytica | \n",
" Eukaryota; Fungi; Dikarya; Ascomycota; Sacchar... | \n",
" False | \n",
"
\n",
" \n",
" 145 | \n",
" 150 | \n",
" iLB1027_lipid | \n",
" 10.1371/journal.pone.0155038 | \n",
" Jennifer Levering | \n",
" 2016 | \n",
" [sbml] | \n",
" Phaeodactylum tricornutum | \n",
" Eukaryota; Stramenopiles; Bacillariophyta; Bac... | \n",
" True | \n",
"
\n",
" \n",
" 146 | \n",
" 151 | \n",
" iLB1027 | \n",
" 10.1371/journal.pone.0155038 | \n",
" Jennifer Levering | \n",
" 2016 | \n",
" [sbml] | \n",
" Phaeodactylum tricornutum | \n",
" Eukaryota; Stramenopiles; Bacillariophyta; Bac... | \n",
" True | \n",
"
\n",
" \n",
" 147 | \n",
" 152 | \n",
" iMT1174 | \n",
" 10.1186/s12918-015-0190-y | \n",
" Mohammad Tajparast | \n",
" 2015 | \n",
" [excel] | \n",
" Rhodococcus jostii RHA1 | \n",
" Bacteria; Terrabacteria group; Actinobacteria;... | \n",
" False | \n",
"
\n",
" \n",
"