"
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"\n",
" \n",
" \n",
"\n",
"\n",
"
\n",
" "
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"\n",
" \n",
" "
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"Predicting pathways for product vanillin in Escherichia coli (using model iJO1366)."
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"application/javascript": [
"\n",
" jQuery(\"#cc4c525c-ac33-4073-89ef-740372ea8cc9\").remove();\n",
" "
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"\n",
"\n",
" \n",
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"\n",
" \n",
" "
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"Predicting pathways for product vanillin in Saccharomyces cerevisiae (using model iMM904)."
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"application/javascript": [
"\n",
" jQuery(\"#2c6d50ad-2157-47be-a3d9-e6bd62f9021a\").remove();\n",
" "
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"\n",
"\n",
" \n",
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"Optimizing 8 pathways\n",
"Starting optimization at Tue, 24 May 2016 12:00:41\n",
"Finished after 00:02:56\n",
"Starting optimization at Tue, 24 May 2016 12:04:07\n",
"Finished after 00:03:40\n",
"Starting optimization at Tue, 24 May 2016 12:08:26\n",
"Finished after 00:04:09\n",
"Starting optimization at Tue, 24 May 2016 12:12:53\n",
"Finished after 00:01:57\n",
"Starting optimization at Tue, 24 May 2016 12:15:11\n",
"Finished after 00:01:27\n",
"Starting optimization at Tue, 24 May 2016 12:16:49\n",
"Finished after 00:01:22\n",
"Starting optimization at Tue, 24 May 2016 12:18:22\n",
"Finished after 00:01:09\n",
"Starting optimization at Tue, 24 May 2016 12:19:40\n",
"Finished after 00:02:31\n"
]
}
],
"source": [
"report = api.design(product='vanillin')"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"text/plain": [
"[(,\n",
" +MNXR5336+MNXR5340+MNXR7229+MNXR68718),\n",
" (,\n",
" +MNXR230+MNXR640+MNXR5336+MNXR5340),\n",
" (,\n",
" +MNXR640+MNXR5336+MNXR5340+MNXR68718),\n",
" (,\n",
" +MNXR5336+MNXR5340+MNXR7734+MNXR68718),\n",
" (,\n",
" +MNXR5336+MNXR5340+MNXR68718),\n",
" (,\n",
" +MNXR5336+MNXR5340+MNXR14769),\n",
" (,\n",
" +MNXR230+MNXR5336+MNXR5340),\n",
" (,\n",
" +MNXR5336+MNXR5340+MNXR5836+MNXR7067)]"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"report"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### IPython notebook"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Click [here](http://nbviewer.ipython.org/github/biosustain/cameo/blob/devel/docs/cameo_high_level_interface.ipynb) to download this page as an IPython notebook."
]
}
],
"metadata": {
"kernelspec": {
"display_name": "IPython (Python 3)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.4.2"
}
},
"nbformat": 4,
"nbformat_minor": 0
}