{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Work in progress, it is far from trivial to make ``quantities`` and ``sympy`` play nice together"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import math\n",
    "from chempy import Equilibrium, ReactionSystem\n",
    "from chempy.units import SI_base_registry, Backend, default_units as u, default_constants as c\n",
    "from chempy.thermodynamics import GibbsEqConst\n",
    "from chempy.kinetics.rates import MassAction, Arrhenius\n",
    "from chempy.kinetics.ode import get_odesys"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "DH, DS, R = -20e3 * u.J/u.mol, -30 * u.J/u.mol/u.K, c.molar_gas_constant.definition\n",
    "ref = 'reinterpreted from: M. W. Lister & D. E. Rivington: Can. J. Chem., 1955, 33(10): 1572-1590'\n",
    "eq = Equilibrium({'Fe+3', 'SCN-'}, {'FeSCN+2'}, GibbsEqConst([DH/R, DS/R]))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "be = Backend()\n",
    "eq.equilibrium_constant({'temperature': 298.15*u.K}, backend=be)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "A, Ea = math.exp(35.5)/u.molar/u.s, 72.2e3 * u.J/u.mol\n",
    "fw, bw = eq.as_reactions(kf=MassAction(Arrhenius([A, Ea/R])))\n",
    "fw.param.dedimensionalisation(SI_base_registry)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "params = {'temperature': 298.15*u.K, 'Fe+3': 1e-2*u.molar, 'SCN-': 1e-3*u.molar, 'FeSCN+2': 1e-6*u.molar}\n",
    "fw.rate(params, backend=be)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "bw.param.dedimensionalisation(SI_base_registry)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "bw.rate(params, backend=be)  # note incorrect formula in bw case (need to divide by c0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "rsys = ReactionSystem([fw, bw])\n",
    "rsys"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Still failing\n",
    "#odesys = get_odesys(rsys, units=SI_base_registry)[0]"
   ]
  }
 ],
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