Analysis started at: Tue Dec 3 14:49:45 2024 Using BPP version: 4.8.2 pver sha1: 1a053a3b61831dc4fb680235a5f6e63e8158ea54 Command: bpp --cfile baobab.A00.msci.ctl Seed: 183243873 (randomly generated) Initial species tree: (Smic, (Agre,(Adig,((z[&phi=0.200000,tau-parent=yes],Arub)y,(Agra,(Amad)z[&phi=0.800000,tau-parent=yes])e)d)c)b)a; Species tree contains hybridization/introgression events. Hybridization events: 1 Bidirectional introgressions: 0 Label Node Child1 Child2 Parent Adig 0 N/A N/A 8 Agra 1 N/A N/A 11 Agre 2 N/A N/A 7 Amad 3 N/A N/A 12 Arub 4 N/A N/A 10 Smic 5 N/A N/A 6 a 6 5 7 N/A b 7 2 8 6 c 8 0 9 7 d 9 10 11 8 y 10 13 4 9 e 11 1 12 9 z 12 3 N/A 11 [tau = 1, phi = 0.800000, prop_tau = 1, has_phi = 1] phi_z : e -> z z 13 N/A N/A 10 Mirrored hybridization node [Hybrid = z (12)] [tau = 1, phi = 0.200000, prop_tau = 0, has_phi = 0] Locus | Model | Sequences | Length | Ambiguous sites | Compressed | Base freqs -------+-------+-----------+--------+-----------------+------------+------------ 1 | JC69 | 10 | 960 | 12 | 19 | Fixed 2 | JC69 | 10 | 933 | 72 | 18 | Fixed 3 | JC69 | 10 | 5945 | 4532 | 103 | Fixed 4 | JC69 | 10 | 4753 | 2331 | 56 | Fixed 5 | JC69 | 10 | 1623 | 312 | 30 | Fixed 6 | JC69 | 10 | 1158 | 0 | 15 | Fixed 7 | JC69 | 10 | 4890 | 437 | 63 | Fixed 8 | JC69 | 10 | 4217 | 3284 | 83 | Fixed 9 | JC69 | 10 | 1800 | 0 | 23 | Fixed 10 | JC69 | 10 | 1020 | 132 | 13 | Fixed 11 | JC69 | 10 | 807 | 195 | 28 | Fixed 12 | JC69 | 10 | 1104 | 114 | 23 | Fixed 13 | JC69 | 10 | 1805 | 783 | 101 | Fixed 14 | JC69 | 10 | 10366 | 5339 | 153 | Fixed 15 | JC69 | 10 | 1674 | 62 | 37 | Fixed 16 | JC69 | 10 | 1566 | 108 | 33 | Fixed 17 | JC69 | 10 | 870 | 0 | 9 | Fixed 18 | JC69 | 10 | 2918 | 1213 | 86 | Fixed 19 | JC69 | 10 | 2109 | 18 | 32 | Fixed 20 | JC69 | 10 | 2271 | 36 | 37 | Fixed 21 | JC69 | 10 | 1728 | 543 | 36 | Fixed 22 | JC69 | 10 | 3429 | 1507 | 67 | Fixed 23 | JC69 | 10 | 1411 | 433 | 33 | Fixed 24 | JC69 | 10 | 1371 | 0 | 17 | Fixed 25 | JC69 | 10 | 4002 | 1464 | 77 | Fixed 26 | JC69 | 10 | 1620 | 699 | 32 | Fixed 27 | JC69 | 10 | 2016 | 33 | 21 | Fixed 28 | JC69 | 10 | 3387 | 1458 | 75 | Fixed 29 | JC69 | 10 | 1140 | 0 | 23 | Fixed 30 | JC69 | 10 | 2112 | 6 | 30 | Fixed 31 | JC69 | 10 | 810 | 3 | 13 | Fixed 32 | JC69 | 10 | 4229 | 1961 | 36 | Fixed 33 | JC69 | 10 | 828 | 3 | 18 | Fixed 34 | JC69 | 10 | 7527 | 2958 | 71 | Fixed 35 | JC69 | 10 | 1137 | 191 | 49 | Fixed 36 | JC69 | 10 | 1539 | 102 | 39 | Fixed 37 | JC69 | 10 | 6710 | 1122 | 128 | Fixed 38 | JC69 | 10 | 1068 | 189 | 27 | Fixed 39 | JC69 | 10 | 1740 | 6 | 19 | Fixed 40 | JC69 | 10 | 873 | 0 | 16 | Fixed 41 | JC69 | 10 | 2476 | 802 | 54 | Fixed 42 | JC69 | 10 | 1516 | 1054 | 39 | Fixed 43 | JC69 | 10 | 1098 | 12 | 23 | Fixed 44 | JC69 | 10 | 4221 | 744 | 29 | Fixed 45 | JC69 | 10 | 1684 | 739 | 37 | Fixed 46 | JC69 | 10 | 6431 | 3832 | 49 | Fixed 47 | JC69 | 10 | 2302 | 998 | 45 | Fixed 48 | JC69 | 10 | 1395 | 342 | 12 | Fixed 49 | JC69 | 10 | 1500 | 93 | 28 | Fixed 50 | JC69 | 10 | 933 | 3 | 15 | Fixed 51 | JC69 | 10 | 1935 | 831 | 28 | Fixed 52 | JC69 | 10 | 7083 | 108 | 49 | Fixed 53 | JC69 | 10 | 1647 | 126 | 27 | Fixed 54 | JC69 | 10 | 2029 | 378 | 58 | Fixed 55 | JC69 | 10 | 1875 | 438 | 27 | Fixed 56 | JC69 | 10 | 1563 | 15 | 34 | Fixed 57 | JC69 | 10 | 1044 | 213 | 25 | Fixed 58 | JC69 | 10 | 11353 | 6452 | 68 | Fixed 59 | JC69 | 10 | 2562 | 3 | 28 | Fixed 60 | JC69 | 10 | 1614 | 6 | 31 | Fixed 61 | JC69 | 10 | 1482 | 168 | 23 | Fixed 62 | JC69 | 10 | 2281 | 1138 | 45 | Fixed 63 | JC69 | 10 | 2182 | 724 | 45 | Fixed 64 | JC69 | 10 | 1434 | 525 | 44 | Fixed 65 | JC69 | 10 | 6538 | 1672 | 49 | Fixed 66 | JC69 | 10 | 2410 | 1325 | 40 | Fixed 67 | JC69 | 10 | 5328 | 699 | 52 | Fixed 68 | JC69 | 10 | 1797 | 675 | 87 | Fixed 69 | JC69 | 10 | 4701 | 561 | 45 | Fixed 70 | JC69 | 10 | 5854 | 2525 | 92 | Fixed 71 | JC69 | 10 | 3064 | 1822 | 50 | Fixed 72 | JC69 | 10 | 1557 | 153 | 26 | Fixed 73 | JC69 | 10 | 960 | 195 | 18 | Fixed 74 | JC69 | 10 | 1530 | 6 | 19 | Fixed 75 | JC69 | 10 | 864 | 162 | 23 | Fixed 76 | JC69 | 10 | 1800 | 288 | 31 | Fixed 77 | JC69 | 10 | 1782 | 9 | 30 | Fixed 78 | JC69 | 10 | 1606 | 25 | 28 | Fixed 79 | JC69 | 10 | 1194 | 102 | 29 | Fixed 80 | JC69 | 10 | 1713 | 6 | 32 | Fixed 81 | JC69 | 10 | 1946 | 1577 | 67 | Fixed 82 | JC69 | 10 | 1349 | 524 | 27 | Fixed 83 | JC69 | 10 | 912 | 48 | 27 | Fixed 84 | JC69 | 10 | 3989 | 2918 | 105 | Fixed 85 | JC69 | 10 | 1863 | 150 | 29 | Fixed 86 | JC69 | 10 | 1241 | 19 | 23 | Fixed 87 | JC69 | 10 | 1138 | 298 | 27 | Fixed 88 | JC69 | 10 | 1335 | 3 | 28 | Fixed 89 | JC69 | 10 | 3489 | 384 | 58 | Fixed 90 | JC69 | 10 | 3948 | 2640 | 66 | Fixed 91 | JC69 | 10 | 3812 | 750 | 43 | Fixed 92 | JC69 | 10 | 855 | 537 | 35 | Fixed 93 | JC69 | 10 | 999 | 3 | 16 | Fixed 94 | JC69 | 10 | 1428 | 546 | 37 | Fixed 95 | JC69 | 10 | 5307 | 2118 | 41 | Fixed 96 | JC69 | 10 | 2400 | 609 | 35 | Fixed 97 | JC69 | 10 | 1035 | 0 | 16 | Fixed 98 | JC69 | 10 | 1110 | 231 | 34 | Fixed 99 | JC69 | 10 | 2487 | 1310 | 65 | Fixed 100 | JC69 | 10 | 1443 | 612 | 33 | Fixed COMPRESSED ALIGNMENTS 10 19 P ^Age001 TGGTCACAAT TCCTTAXXX ^Adi002 TGGTCACAAT TTTCACXXX ^Adi001 TGGTCACAAT CCTCACXXX ^Aru127 TGGTCACAGC TCCCATXXX ^Aru001 TGGTCACGAC TCCCATXXX ^Ama006 TGGTCCGTAT TCCCATXXX ^Smi165 TGGCTAAAAT CCCTATAXX ^Aga001 TAXTTACTAT TCCCATXGX ^Ama018 TGGTCCGTAT TCCCATXXX ^Aga002 TAXTTACTAT TCCCATXGX 905 4 3 17 1 2 1 1 2 2 1 1 3 1 6 1 3 3 3 10 18 P ^Age001 CGCGTACCTG CAACTXXX ^Adi002 CGCGTACCTG TGGGAAAC ^Adi001 CGCGTACCTG CGGGAAAG ^Aru127 CGCGTAGTAC CAGGGAGC ^Aru001 CGCGTACTAC CAGGGAGC ^Ama006 CGCGTGCCTC CAGGAAAC ^Smi165 CGCGCACCGG CAAGAAAC ^Aga001 CGCATACCTG CAGGAAAC ^Ama018 CGTGTGCCTC CAGGAAAC ^Aga002 CACATACCTG CAGGAAAC 777 1 2 5 25 3 1 1 1 1 1 2 1 39 1 70 1 1 10 103 P ^Age001 AGGGATTTCA CTGCTCCAGT AAAGCTGTTA CTGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 AGGGATTTCA CTATGTTGAC GGGTGCCGCC XXXAGATTGA TTCGAGTTAA AGCTAAAGGC CGGTAGGTCA CCACACAGCT GGTCXXXXXX XXXXXXXXXX XXX ^Adi001 AGGGATTTCA CGGCGTTGAC GGGTGCCGCT XXXAGATTGA TTCGAGTTAA AGCTAAAGGC CGGTAGGTCA CCACACAGTC AAGTXXXXXX XXXXXXXXXX XXX ^Aru127 AGGGATTTTT TTGCTCCAGT AGGTGCTAAA XXXAGATTGA TTCGAGTTAA AGCTAAAGGC GTAGTCAATG TGGACGXXCT GAGTAAGXXX XXXXXXXXXX XXX ^Aru001 AGGGATTACT TTGCTCCAGC GAAGGAGAAA CCXAGATTGA CCGCGXXXXX XXXXXXXXXX CGAGTAXXXX XXXXXXXXGX XACXXXXGXX XXXXXXXXXX XXX ^Ama006 AGGGAAGTCA CTGCTCTGAC GGGTGCCTCC XXXAGATCAG TTCGGGTTAA AGCTAAGCCX CTGGTGGTCA CGGATXAACT TAGTAGCXAT GAGAGCTXXX XXX ^Smi165 AGGGTTTTCA TTGGTTCGAT GAGCGCCTAC XXXAAGXTGA TCTXAGTTAA AATATXAGCC CTATTTGATC GCGAACAGCT GAGTAACXAT GGTCTTXGTA XXX ^Aga001 AGACATGTCA CTGCTCTGCC GGGTGCCTCC XXXAGATTGG TTCGGGTTTC XGTGGAATGC CTGGTGGTCA TGGXACXXCT GAGTAACXAC XATTAXXGAX GXX ^Ama018 AGGGAAGTCA CTGCTCTGAC GGGTGCCTCC XXXAGATTAG TTCGGGTCAA AGCTAAACGC CTGGTGGTCA CGGATCXXCT TAGTAACXXX XXXXXXXXXX XXX ^Aga002 ATGCATGTCA CTGCTCTGCC GGGTGCCTCC XXXAGGTTGG TTCGGGCTAC AGTTGAACGC CTGGTGGTTA TGGAACXXCT GAGTAACXAT XAGAAXXXXX XCX 1231 1 1 7 33 3 5 17 11 6 2 3 1 1 11 2 11 6 1 1 4 1 31 1 15 3 1 1 1 1 717 168 375 325 14 2 3 1 1 1 87 4 2 3 1 629 1 2 3 2 2 26 1 1 1 11 4 1 1 12 6 2 1 1 2 1 1 1 1 1 1 3 2 1 1 1 5 2 2 1 1 1 1 2 5 1 1 49 1 1 214 1 1 1 1 42 80 10 2 102 36 51 1491 10 56 P ^Age001 CCAATCGTCC CAGACATCGT TAGTGAAACT GGTXXXXXXX XXXXXXXXXX XXXXXX ^Adi002 CCAATCGTCC CAGACATCGT TAGTAGGGTC AAXAAACTCA AXXXXXXXXX XXXXXX ^Adi001 CCAATCGTCC CAGACATCGT TAGGGAAGTC AAXXXXXXXX XXXXXXXXXX XXXXXX ^Aru127 CCAATCGTCC CAGACATTAC CGTTGAAACC AAXAAACTCG GGGTAXXXXX XXXXXX ^Aru001 CCAATCGTCC CAGACACCGC CGTTGAAACC AAXXXXXXXX XXXXXXXXXX XXXXXX ^Ama006 CCAATCGTCT TTATTTTCGT CGCTGAAACC AAXAAACTGA GGGTAAGGAT TAGXXX ^Smi165 CCAATTCXXC CAATAXTCAT TGGTGGTATT AXXAAATCCA GGGCXXXXXX XXXAXX ^Aga001 CCAGGCGTAC CTGTTATCGT CACTGAAACC AAXAATCCCA GGACXAGGAA XXXXXX ^Ama018 CCGATCGTCC TTATTATCGT CGCTGAAACC AAXAGACTGA GGGTAAXXXX XXXXXX ^Aga002 CTAAGCATCC CTGTTATCGT CGCTGAAACC AAXXXXXXXX XXXXXAGCXX TGXXCX 2241 1 2 2 1 130 1 136 2 1 1 5 1 1 1 1 1 3 1 3 1 1 1 1 1 1 1 4 1 1 13 1 9 90 2 6 1 3 1 1 1 19 1 1 33 84 9 1 160 25 765 109 479 197 187 7 10 30 P ^Age001 GAGTATGACA CATATTATAC ATAXXXXXXX ^Adi002 GAGTATGACA CATGCCGAGG CCXCAGATTA ^Adi001 GAGTATGACA CATATCGAGG CCXCAGATTG ^Aru127 GAGTATACTX XXXAXTAAGG CXXCAGAGXG ^Aru001 GAGTACGATX XXXAXTGAGG CXXCAGTGXG ^Ama006 GAGCGTGCTA CACATTAAGG CCXCAGAGXG ^Smi165 GAATATGATA CGCATTATGG TCXCATAGTG ^Aga001 GGGTATGATA CACATTGAAG CCXCGGAGTG ^Ama018 GAGTGTGCTA TACATTAAGG CCXCAGAGXG ^Aga002 GGGTATGATX XXXAXTGAAG CXXCGGAGXG 1241 2 19 2 1 3 3 2 1 143 2 1 1 3 1 1 1 1 1 29 1 2 3 141 2 7 1 3 3 2 10 15 P ^Age001 TCCTTCCTAC TGCTG ^Adi002 TCCTTCCTAC TATCT ^Adi001 TCCTTCCTAC TATCT ^Aru127 TCCTTCCTGT CGCCT ^Aru001 TCCTTCTCGT CGCCT ^Ama006 TCCTTTCTAT CGTCT ^Smi165 TCCTCCCTAC CGTTT ^Aga001 TCCCTCCCAC TGTTT ^Ama018 TCTCTCCTAC TGTCT ^Aga002 TGCCTCCTAC TGTCT 1107 1 2 1 29 2 2 1 1 1 1 1 1 1 7 10 63 P ^Age001 AACAATTGCT CAGACCCTGT CCACGAGCTA ACTCTCATCC AXXXXXXXXX XXXXXXXXXX XXX ^Adi002 AACAATTGCT CAGACCCTGT CCACGAATCG GTCTCGTCTT XCATTCACGC AXXXXXXXXX XXX ^Adi001 AACAATTGCT CAGACCCTGT CCCTTXGCCG GTCTCGTCXX XCATTCACGG XCTCGTGTTT AXX ^Aru127 AACAATTGCT CAGACTTCAC TTACAAGCTA ATCTCGTACT XCATTCGAXA XCTCGTGTCG XXX ^Aru001 AACAATTGCT CAGCTCCTAC TTACAAGCTA ATCTCGTACT XCATTCGAXA XCTCGTGACG XXX ^Ama006 AACAATTGCG TGAACCCTGT CCACGAGCTA ACCTCGTCCT XCATCTAAXC XCTCGTGTCG XXX ^Smi165 AACAACGCGT CAGATCCCGT TTACGAGGTA GTTTCGGCTT XCACTCAAGG ACTCGCATCA XGX ^Aga001 AACGGTTCAT CGAACCTTGC CTACGAGCTG ATCCCGTCCT XCGTTTAAGT ACTGXTXTCG XXX ^Ama018 AAGAATTGCT TGAACCCTGT CCACGAGCTA ACCTCGTCCT XCATCTAAXC XCGCGTGTCG XXX ^Aga002 AGCAGTGCAT CAAACCTTGC GTATGXGCTG ATCCTGTCXX XCGTTTAAGT XCTCGTGTCG AXX 4122 3 6 3 15 153 1 1 1 5 11 1 1 1 1 4 1 1 17 3 1 2 7 14 1 39 5 1 28 1 1 2 3 1 1 32 1 1 1 1 9 147 1 10 2 1 3 3 2 1 1 30 1 3 8 2 1 1 1 1 39 111 18 10 83 P ^Age001 GTTCCGACCT ATCGCGCATA TGTAGCTAGG CAGACTGCAA TATGATTTTG TAAAXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 GTTCCGACCT ATCGCGCATA TGTAGTCGAA AGAGTCAGGC GCGACGGAXX XXXXTCATAG AACCTTCTGT GACTCATXXX XXX ^Adi001 GTTCCGACCT ATCGCGCATA TCCGTCTAGA AGAGTCAGGC GCGACAACTG CXXXTCATAG AACCTTCTGT GACCTCCTCC TXX ^Aru127 GTTCCGACCT ATCGCAGGCG CGTGTCTAAG CAGATCAGGC GCACTGACTC CXXXTCATAG AACCTTTGAC AGTTCCCTCT CXX ^Aru001 GTTCCGACCT ATTCTGCGCG CGTATCTAAG CAGATCAGGC GCACTGGCXX XXXXTCATAG AACCTATGAC AGTTCCCXXX XXX ^Ama006 GTTCCGACCC GCCGCGCATG CGTGTCTGAG CAAGCTAGGC GTGATGACTG CXXXTCATAG AGTTCTCTGT AGTTCCCTTC CXX ^Smi165 GTTCTTXXXT XXCCXGXAXA XGXXXCXAXG AXAXCXGGGG XXTXXXXXXX XAGXTCATAA XACTCTCTAX GGXTTCXXXX XCX ^Aga001 GTTTCGACTT ATCGCGCATG CGTATCTAAG CAAACCACGC GCGATGGCXX XXXXTCACTG AACCTTCGGT AGTTCCCXXX XXC ^Ama018 GTACCAATCC ACCGCGCATG CGTGTCTGAG CAAGCCAGGC GTGATGACTG CXXXTCGTAG AATCCTCTGT AGTTCCCTCC CXX ^Aga002 GCTTCGACTT ATCGCGCATG CGTATCTAAG CAAACCACGC GCGATGGCXX XXXXTGATTG AACCTTCGGT AGTTCCCXXX XXX 816 1 1 3 32 1 358 1 1 1 2 1 1 1 1 1 2 7 3 1 1 3 1 2 1 5 2 1 1 3 1 3 1 1 1 1 36 1 12 2 340 1 1 1 1 1 1 3 29 1 24 649 32 398 1129 1 1 1 2 61 47 2 7 1 1 2 3 1 2 1 2 5 1 1 1 1 1 73 1 1 3 60 9 10 23 P ^Age001 AAGTCCCTCA GAAGCCACGA CCT ^Adi002 AAGTCCCTCA GAAGCCGTAG TAG ^Adi001 AAGTCCCTCA GAAGGTACGG TAG ^Aru127 AAGTCCCTTG ATGACCACGA CAG ^Aru001 AAGTCCCGCG ATGCCCACGA CAG ^Ama006 AAGTTGTTCA GTGACCACGA CAG ^Smi165 AAGCCCTTCA AATGCCACAA TCG ^Aga001 AACTCCCTCA GTGACTACGA CAG ^Ama018 AGGTCGCTCA GTGACCATGA CAG ^Aga002 AACTCCCTCA ATGACTACGA CAG 1710 2 2 45 2 3 1 1 3 2 1 1 1 1 3 1 1 1 1 5 1 1 11 10 13 P ^Age001 TCTTCTATTA TCX ^Adi002 TCTTCTATCG CAX ^Adi001 TCTTCTAGTG CAX ^Aru127 TCTTCTCTTA CAX ^Aru001 TCTTCTCTTA CAX ^Ama006 TCTTGCATTA CAX ^Smi165 TCTACTATTA TAC ^Aga001 TCCTCCATTA CAX ^Ama018 TATTGCATTA CAX ^Aga002 TCCTCCATTA CAX 856 1 3 12 2 1 3 2 1 2 1 4 132 10 28 P ^Age001 GTGGAGGTGT TAAGCGCAAG CCTGCAXX ^Adi002 GTGGAGGTGT TAATTATGGA TAAXXXXX ^Adi001 GTGGAGGTGC CTGGCGCGGA TAAXXXXX ^Aru127 GTGGAGGCAT TAGGCGCAGA TAAGGXTA ^Aru001 GTGGAGACAT TAGGCGCAGA TAAGGXXX ^Ama006 GTGGGAGTGT TAAGCGCAAA TAAGCXTC ^Smi165 GTAXAAGTXT CXGGCAXXGG TGXXXXXX ^Aga001 GCGGAGGTGT TAAGCGCAAA TCAGCXXX ^Ama018 GTGGGAGTGT TAAGTGCAAA TAAGCXTC ^Aga002 GCGGAGGTGT TAAGCGCGAA TCAXXXXX 570 1 15 62 1 1 1 4 2 3 3 2 1 3 1 1 1 1 1 1 4 1 4 77 1 3 41 1 10 23 P ^Age001 GGTATCTCAT TGATTCGCCX XXX ^Adi002 GGTATCTCAT TGATTCATGT CCX ^Adi001 GGTATCTCAT TGATTCATGT CAX ^Aru127 GGTATCTCAT TGTCGGGTGT CCX ^Aru001 GGTATCTCAT TATCGGGTGT XXX ^Ama006 GGTATCTCGC CGATGGGTGT CCX ^Smi165 GGTATACTAT TGATTGGTAT CCX ^Aga001 GGCGGCTCAT CGACGGGTGT CCX ^Ama018 GGTATCTCAC CGATGGGTGT CCX ^Aga002 GCTGACCAAT TGACGGGTGT CCA 914 29 1 1 1 15 2 1 1 3 1 1 3 1 1 1 7 6 1 18 11 1 84 10 101 P ^Age001 CTAATATACC ATTTACGTAG CGCCAAGCAT AGCTGGACAA ATGCCCCGAG CTGTACGAGA TCCTGCGCAA TGGXXXXXXX XXXXXXXXXX XXXXXXXXXX X ^Adi002 CTAATATACC ATTTACGTAG CGCCAAGCAC GAGACAGGTC GAATTGTTTX XXXXXXXXXX XXXXXXXXXX XXXACTGCCC CGACAGGATG TTCTGXXXXX X ^Adi001 CTAATATACC ATTTACGTAG CGCCAAGATT AGCACAGGTC GAATTGTTGG CTGTACGAGA TCCTTTAGGX XXXACTGCCC CGACAGGATG CGTXXXXXXX X ^Aru127 CTAATATACC ATTTACGTAG CGTTCGACAT AGCTGGACAA ATGCTGTTAG CTGTACGAGA TTTCGCAGTA TGGACTGCCC CGGTGTAGCA TGTTXXXXXX X ^Aru001 CTAATATACC ATTTACGTAG AXCCCGACAT AGCTGGACAA ATAATGTTAG CTGTACGAGA GTTCGCAGTA TGGACTGCCC CGGTGTAGCA TGTTXXXXXX X ^Ama006 CTAATATACC ATTTGATGGX CGCCAAACAT AAATGGACTC GCGCCGTTAG CTGTACGCTX TCXXGTAGXA TTAACTGCCA AAACAGAGCA TGTTXTTXXX X ^Smi165 CTAATATATA GGCXACGGGG CGCCAAGCAT AGCTGGGTTC TTGCCCTTAG CTGTCTXAGA TCCTGTAGGA CGGACTAXXC CXACGCGACT TTXXXXXAXX X ^Aga001 CTAATGCXCC ACXTACGTXG CGCAAAGCGT AGCTGAACAC GTGCCGTTAG CTACACGAGA TCCTGCATGA TGGACCGCTC CGATACGGCA TGTTXXXXXX X ^Ama018 CTAGXATACC ATTTAAXGGX CGCCAAACAT XGATTGACTC GCGCCGTTAG CGGTACGCCX TCXXGTAGXA TTTATTGCCC AAACAGAGCA TGTTXTGXAT X ^Aga002 CCXATACXCT XCXTACGTXG CGCCAXGCGT AGCTGAACAC GTGCCGTXAG GTGCAGGAGA TCCCGCAGGA TGGACCGCTC CCATACGGCA TGTTXXXXAX X 855 4 13 1 3 3 10 8 40 2 1 1 3 3 2 13 1 5 1 6 1 3 2 1 8 1 1 4 1 2 1 1 1 19 1 3 2 2 4 4 1 1 2 1 1 1 21 1 1 359 1 2 2 1 21 1 1 2 1 6 1 2 1 1 7 2 8 1 1 15 1 1 1 164 2 4 16 51 1 1 2 1 2 1 1 1 1 2 6 1 2 1 1 3 1 5 1 13 4 4 7 10 153 P ^Age001 GAGTTTTAAC GAGAACGCAG TATCTTGAGA TCGAACAACA TTCCCTTTCG GTTAAGGTAC AGTTGTAGCA CGCGAAGCGC CGTGCTTACG CGGGGAGGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 GAGTTTTAAC GAGAACGCAG TATCTTGAGA TCGAACAACA TTCCCTTTCG GTTAAGGTTT GTCATCCAAT TATAGGTTAA TACATCCTTA GAATATACTC GTGCTCAGGG TCGTCGTCCG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi001 GAGTTTTAAC GAGAACGCAG TATCTTGAGA TCGAACAACA TTCCCTTTGA TCGTCATCAC AGTTGTAGCA TATAGGTTAA TACATCCTTA GAATATCATC GTGCTCAGGG TCGTCGTCTA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Aru127 GAGTTTTAAC GAGAACGCAG TATCTTGAGG ATAGTTTGTG CCTTTCACCG GTTAAGGCAC GTCATCCAGG CGCGAAGCGC CACATCCTTA GAATATACTC GTGCTCAGGG TTACATGACA ATCACAATCA ACGCCCGATT CATXXXXXXX XXX ^Aru001 GAGTTTTAAC GAGAACGCAG TATCCCAGAA TCGAACTGTG CCTTTCCXCG GTTAAGGCAA AGTTGTAACA CGCGAAGCGC TGTGCCCTTA GAATATGCTC GTXXXXXXXX XTXXXXXXXX ATCACAATCA GTATXXXXXX XXXACTGTXX XXX ^Ama006 GAGTTTTAAC GAGTGTATCT XXXXTTGGXA ATAGXXAACA CCTTXXTCCG GTTACAXCAC ATCATCCAAG CGCGAAGTAX CACAXCCTTA GAAAXXACTC AXGGXXXXXX XCAXXXXXXX ATCACAGXXX ACATCAXXXX XXXXXXXXAX XXX ^Smi165 GAGTTCCGTA XXXAATAGGX TGXXTCTGGA TCAGAXAGTT TCTTGXTXCG GCGXAATCAC GGTTGCCGGG CGTACCXCGC TGTAXTTTTA GTXXGXAATG TTXXTCGXXX XCXTAXXXXX AGTXXXXTGX AXXXXXGGXX XXXXXXXXXA XXX ^Aga001 GAGAATTGTG GGCAACGCAG TATATTGAGA TTGGACAATA TTTTCCTTCG GTTAAGGTAC AGTACTCAAG CACAACGCAC CGCGTTCACA GAATATGCTC GTGCTAAGGG CCGTCGTACA ATTACGGXXA ACATXXGATC AXXAGXXXXX AXX ^Ama018 GAATTTTAAC GAGAGCACCG TATCTTGGGA ATAGACAACA CCTTCTTCCG GTTACAGCAC ATCATCCAAG CGCGAAGTAC CACATCCTTA GAATATACTC AXGCTCAGGT CCATCGGACA ATCATAAXXA ACAACCGATT AACXXTAXXX AGX ^Aga002 GGGTATCATC GACAACGCAG TATATTGAGA TCGAACAATA TTCTCCTTCA CTGAAGGCAC GGCAGCCGAG CACGAAGCAC CACATTCATG GAATATCATC GTGCTAAGAG CCGTCGTACA ATTACGGXXA ACATXXGATC AXXAGXXXXX AXX 4407 15 4 39 8 220 1 47 1 4 105 1 1 4 14 3 2 3 3 16 55 45 163 1 18 21 1 1 1 9 2 2 1 17 1 1 24 2 1 2 1 7 3 1 1 1 1 1 7 13 1 1 3 1 1 1 1 2 1 1 1 2 2 1 1 12 8 8 1 1 20 1 2 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 2 23 4 1 1 1 4 1 1 10 3 1 6 6 1 66 2 48 524 1 10 1 1 2 1 1 8 1 1 1 1 34 30 1 192 3 2 1 10 11 10 1 3 4 1 467 46 1 3 39 1 1 345 54 64 2 90 3 1 3 60 3 1677 1074 10 37 P ^Age001 CGATACGATA GTCATTTCAC TCATTXXXXX XXXXXXX ^Adi002 CGATACGATA GTCATTTCGT CTCCXTTAGA GATTCXX ^Adi001 CGATACGATA GTCATTTTGT CTCCXTTAGA GATTTXX ^Aru127 CGATACGATC ACTTXXXCAC CTTXTTAXXX XXXXTXX ^Aru001 CGATACGATC ACTTXXXCAC CTTXTTAXXX XXXXTXX ^Ama006 CGATACGGXA GTTTTTTCAC CTCTTXXAGA GGXXXXX ^Smi165 CGATGTAATA AGCATTCCAT CTCTTXXAGA AATXXXX ^Aga001 CGGXACAAXA GTCTTXTCAC TTCXTTAAAX GAXTTAX ^Ama018 CGATACGGXA GTTTTTTCAC CTCTTXXAGA GGXXXXX ^Aga002 CAGXATAAXA GTCTTXTCAC TTCXTTAAAX GAXTTAX 1518 2 2 1 49 2 1 9 2 6 1 2 1 2 1 2 1 1 5 1 1 8 1 1 3 3 1 27 1 2 1 1 1 1 1 9 3 10 33 P ^Age001 TGGGCTCTCT CCAATGGATG CGTCCGTAAG XXX ^Adi002 TGGGCTCTCT CCCGAATGAA TAGAXXXXXX AXX ^Adi001 TGGGCTCTCT CAAAAATGAA TAGGXXXXXX AXX ^Aru127 TGGGCTCTCA TCAATGGAAA TCACCGTXXX XXX ^Aru001 TGGGCTCTGT TCAATGGAAA TCACCGTXXX XXX ^Ama006 TGGGCTTGCT CCAATGGGTA TGACCGTXXX XTX ^Smi165 TGGGCCCTCT CCAATAAAAG TGAGCGCXXX AXX ^Aga001 TGGTTTCTCT CCAGAATGAA TAAGCXXAGX AXX ^Ama018 TGCGCTCGCT CCAATGGGTA TGACCGTXXX XTX ^Aga002 TAGGTTCTCT CCAGAATGAA TAAGCXXXXX AXX 1354 2 1 3 5 34 1 2 4 1 5 7 6 1 5 4 2 1 3 2 12 1 1 1 3 8 1 14 1 3 6 3 69 10 9 P ^Age001 ATACTCAGG ^Adi002 ATACTTGAA ^Adi001 ATACCCGAA ^Aru127 ATAGTCGAA ^Aru001 ATAGTCGAA ^Ama006 ATACTCGAA ^Smi165 ATGCTCAAA ^Aga001 AGACTCGAA ^Ama018 ATACTCGAA ^Aga002 AGACTCGAT 842 2 15 1 2 1 2 4 1 10 86 P ^Age001 TTCGGTGCCT ATGCATGGTA AACTAGCTGC ACTGGCCGTA GCGTCCGCGG GCGGAAAGAC CGCGGTGXXX XXXXXXXXXX XXXXXX ^Adi002 TTCGGTGCCT ATGCATGGTA AACTAGCTGC ACTGGCCGTA GCGTTGATAC AAACTCGATG GCGXXXXTGC CAATTGGTGA GCGXXX ^Adi001 TTCGGTGCCT ATGCATGGTA AACTAGCTGC ACTGGCCTGG TTACCCGTAC AAACTCGATG GCGGAXXTGC CAATTGGTGA GCGXXX ^Aru127 TTCGGTGCCT ATGCATGGTA AACTAAAACT CTCTTTXGTA GCACCCACGG GAACTCGATG GCAGGXXTGC CAATTGGTGA AAAXXX ^Aru001 TTCGGTGCCT ATGCATGGTA ACAGXGCTCT CTCTXXCGTA GTGCCCACGG GAACTCGATG GCGGGXXTGC CAAGGTTXXX GAXXXX ^Ama006 TTCGGTGCCT ATATGGAAXX XACTAGCTGC ACTGGCCGTA GCGCCCGCGG ACGGACGATG GTGGGXXTGC CGTTTTTTGG GAAGXX ^Smi165 TTCGGTATTG GXGCGCXXTG XAGXAGTXGC ATCXGTXGTG ATGCCTGCCX GCAXXAGACX XTGGGTXTTX XXXTXTXXXX XXXXGX ^Aga001 TTCCAXGCTA XTGCATGATA AACTAGCTGT GCCGGCCGCG GCACCCACGG GAGGTCGCTC GCGGGXXTGC TATTTGGTAA GAGXXX ^Ama018 TTTGGTGCCT ATGTGGAAXX XACTAGCTGC ACTGGCCGTA GCGCCCGCGG ACGGACGATG GTGGGXXTGC CGTTTTTTGG GAAGXX ^Aga002 TCCGAXGATA XTGCATGATA AACTAGCTGT GCCGGCCGCG GCACCCACGG GAAGTCGCTC GCGGGXXTGC TATTTGGTGA GAGXXX 1443 6 1 3 15 2 86 1 1 1 1 332 1 25 11 1 8 1 5 1 3 1 1 1 1 5 1 2 7 1 1 1 1 3 1 1 3 2 1 1 1 1 1 1 8 1 1 12 1 5 1 1 1 1 2 13 37 2 3 1 9 1 1 5 1 15 9 3 1 80 1 1 1 1 2 1 1 99 1 1 1 3 1 3 5 594 10 32 P ^Age001 CTCTGCAGTG CGTCGATAGA CTGTTAGGAG GG ^Adi002 CTCTGCAGTG CGTCGATAGC TCAGCGAAGA AC ^Adi001 CTCTGCAGTG CGTCGGAGTA CTGGCGAAGA AC ^Aru127 CTCTGCAGTA TCCAAATAGA CCATTAAAGA TA ^Aru001 CTCTGCAGTG TCCAAATAGA CCATTAAAGA TA ^Ama006 CTCTGCAGCG CGTAAATACA CCATCCGAGA GA ^Smi165 CTCTAAXXTG CGCCAAATGA TTATTAGGGT GC ^Aga001 CTACGAAGTG CCTAAATAGA CCATCAAAGA GA ^Ama018 CCCTGCAACG CGTAAATAGA CCATCCGAGA GA ^Aga002 CTCCGAAGTG CCTAAATAGA CCATCAAAGA GA 1939 3 1 7 63 1 17 1 2 2 4 2 2 6 6 11 1 1 1 9 1 1 2 2 1 1 1 1 17 1 1 1 10 37 P ^Age001 AGCACAGTAT GCGGTGCGCG TCGTGACCCA CCTTGAX ^Adi002 AGCACAGTAT GCGGTGCGCG TCGTGAGATG TGCGACX ^Adi001 AGCACAGTAT GCGGTGCGCG TCGTGGCCCG TGCGACX ^Aru127 AGCACAGTAT GCGGCATATA CGAXXACCCA CGCGACX ^Aru001 AGCACAGTAT GCGATGCATA CGATGACCCA CGCGACX ^Ama006 AGCACAGTAT GTAGTGCGCG CGATGACCCA CCCGACX ^Smi165 AGCACAGCTC CCAGTGGGCT TCATTACCGA TGTGATX ^Aga001 AGCGTGXTTC ACGGTTCGTC TGGTGACTGA CCCTACX ^Ama018 AGTACAGTAT GTAGTGCGCG CGATGACCCA CCCGACX ^Aga002 ACCATTGTAC GCGGTGCGCG CCGTGACCTA CCCTACX 2019 3 4 49 6 1 3 77 9 1 1 5 1 6 1 1 1 7 1 1 1 1 1 25 2 3 2 1 1 11 1 1 2 1 14 1 6 10 36 P ^Age001 GTAACGCGTT GGCGACCCGC TGCCTCCCCT AXXXXX ^Adi002 GTAACGCGTT GGCGACCCGC TGCAGTTTTG GAGXXX ^Adi001 GTAACGCGTT GGCGACCTAA ACXCTTTTTA CAACXX ^Aru127 GTAACGCGTT GGAAGTTCGC TGCCGCTTTT GAGXXX ^Aru001 GTAACGCGTT GACGGTTCGC TGCCGCTTTT GAGXXX ^Ama006 GTAACGCAGC XGCGATGCGC TACCGCTTTT GAGXXX ^Smi165 GTAAAXXGTX XGCXACCCAA CGCCGCCTXT GAGXAX ^Aga001 GTCGCGTGGT XGCGACTCGT TGCCGCTTTT GAGXXX ^Ama018 GTAACGCGTT XGCGACTCGT TGCCGCTTTT GAGXXX ^Aga002 GCAGCGTGGT XGCGACTCGT TGCCGCTTTT GAGXXX 989 1 5 1 91 180 1 2 1 1 6 1 2 1 1 1 1 60 10 1 2 1 9 4 1 2 2 4 3 1 1 2 1 3 306 30 10 67 P ^Age001 AGGAATCTTA TTGCGACTGT ATGGAGATTA CAAGCCACGA TTACCTGTCG AACTCGTTGA XXXXXXX ^Adi002 AGGAATCTTA TTGCGACTGT CGAAGACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Adi001 AGGAATCTTA TTGCGACTGT AGAAGACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Aru127 AGGAATCTTA TTGCGATCCG CTGGAACAGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Aru001 AGGAATCTTA TTGCAGCTGG CTGGAACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Ama006 AGGAATCTTT CCAGGACTGT CTGAGACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Smi165 AGGAAAACXA TTATGGCCXT CTAAGGCAGA CAAGTTTTTC XXXXXXXXXX XXXXXXXXXX AXXXXXX ^Aga001 AGGCCTCTTA TCGCGACTGT CTGGGACTCA CAGCCCATAG TTACCTGAGC CGTXXXXXXX XGXXXXX ^Ama018 AGAAATCCTA CCGGGACTGT CTGAAACCCA CCAGCCACTG TTATGXXTCG AGATCGCCCX XXATCXX ^Aga002 AAGACTTTTA TCGCGACTGT CTGGGACTCA GAAACTXTGG TGXCTTCTGA XAATAXTAXX XXAGXTX 1771 2 13 1 4 55 2 1 15 2 3 2 1 2 2 1 9 13 4 12 1 10 1 1 1 1 9 1 1 3 1 1 1 1 1 1 1 1 1 1 16 3 12 2 1 1 1 13 15 9 11 3 2 12 19 149 1 1 82 3 21 126 2 1 914 6 49 10 33 P ^Age001 CGTCCTACGC GTTACTAGAG ACGCGCCXXX XXX ^Adi002 CGTCCTACGC GTTACTAGGA TXXXXXXTTA CTX ^Adi001 CGTCCTACGC GTTACGXXGA XXXXXXXTTA CTX ^Aru127 CGTCCTACGT ACCGTTAAAA ACGCGCTTTG TAX ^Aru001 CGTCCCTTAC GTCGTTAAAA ACGCGCTTTA CTX ^Ama006 CGTCTTACGC ACTGTTAGAA ACGCTTCTTG TAX ^Smi165 CGGACTATCC GCTGTTACAA ACGTGCCTGA TGX ^Aga001 CATACTTTCC GTTATTAGAA ACTCGCCTTA CTX ^Ama018 CGTCTTACGC ACTGTTAGAA ACGCGTCTTG TAX ^Aga002 CATACTTTCC GTTATTAGAA ACTCGCCTTA CTX 911 3 18 10 3 1 1 1 1 3 8 1 1 1 1 4 27 1 2 8 2 155 1 4 2 2 1 55 2 1 1 1 178 10 17 P ^Age001 CGAATGCTGA ACTGCAC ^Adi002 CGAATGCTGA ATCATGA ^Adi001 CGAATGCTGA GTCATGA ^Aru127 CGAATGTCTG ACTGTGA ^Aru001 CGAATTCCTG ACTGTGA ^Ama006 CGAAAGCTGA ACTGTGA ^Smi165 CGAGTGCTGA ACCTCGG ^Aga001 CGAATGCTTG ACTGTGA ^Ama018 CGCAAGCTGA ACTGTGA ^Aga002 CAAATGCTGG ACTGTGA 1299 1 2 33 6 1 1 2 1 2 2 7 1 1 2 9 1 10 77 P ^Age001 ACAGAAAGCA GTCTGACGAT GACTAGTTGT GGTACGCATC AAGTGATCTT ACTGATAGTA CACCTCGGTA AXXXXXX ^Adi002 ACAGAAAGCA GTCTGACGAT GACTAGTTGT GGTAAATGCT GGACAGCTCA GTGCTGCACT TGTTGGCACX XGCCTXX ^Adi001 ACAGAAAGCA GTCTGACGGC ACTCGAAGAG AACXCGCATC AAGTGATCTT ACTGATAACT TGTTGGCTGA AGCXXTX ^Aru127 ACAGAAAGCA GTCTGGATAT GACTAGTTGT AAAACGCATC GGACAGCTCA GTGCGCTGTA TGTTATTGCX XGTCTXX ^Aru001 ACAGAAAGCA GTCCAAATAT GATCGAAACC AATACGCACT AAGTAGCTCA GTGTTCTGTA TGTGGTTTCX XGTCTXX ^Ama006 ACAGAAAGAG ACGTGACTAT GACTAGCTGT GATACATGCT AGACAGCTCA GTGCTCTGCT TGTTGGTGCX XGCCTXX ^Smi165 ACAGAGGACA GTCTGACGAT GCCCGTGTGC GACACGTGTT AAACGATTCA GAACTTCGTT CGGTGGCGCA TGCCCXX ^Aga001 ACAAGAAACA GCTTGACGAT ACCTGGATAT GACACGCGCT AAGCGACCTA GCGGTTAGCT TGTTGGCGTA AGCXXXX ^Ama018 ACGGAAAGCG ACGTGACTAT GACTAGCTGT GATACATGCT AGACAGCTGA GTGCTCTGCT TGTTGGTGCX XGCCTXX ^Aga002 AAAGGACGCA ACTTTACGAC GACTAGTTGT GATACGCATC AGACGGTTCT GTTCACTGCT TGTTGGCGCX XGCCTXX 2187 10 1 8 5 32 1 1 3 10 1 1 1 17 1 6 4 1 10 1 7 7 38 12 1 3 1 1 1 1 1 1 1 3 18 1 1 2 2 6 1 1 1 1 1 26 2 48 1 4 1 3 1 1 1 1 1 1 3 4 1 20 1 1 1 1 1 2 1 8 1 2 1 2 1 393 1053 10 32 P ^Age001 AAGGTAGATC AACCAGGGCT ACAGAAXXXX XX ^Adi002 AAGGTAGATC AACCAGGATC GTGCCXXXXX XX ^Adi001 AAGGTAGATC AACCAGGGTC GTGCCXXXXX XX ^Aru127 AAGGTAGATC AATTTATACT GTGCTXXXXX XX ^Aru001 AAGGTAGATC TGCCAGGGTC GTGCTXXXXX XX ^Ama006 AAGGTAGATT AGCCAGGATC GTGCCXTTAX XX ^Smi165 AAGGTAGTCC AACCTAAGCC ACGAAXXXXT XX ^Aga001 AAGCGXXAAC AGCTATGGTC GXGCCXTGXX GX ^Ama018 AAAGTACATC AGCCAGGGTC GTGCCXXXXX XX ^Aga002 ATGGGAGATC AGCTAGGATC ATGCAXXXXX XX 838 6 4 10 4 65 1 8 1 2 5 1 20 1 6 1 1 1 1 1 3 3 5 1 1 12 41 46 84 12 282 153 10 21 P ^Age001 CCGAGGCCTC GCATCCTGXX X ^Adi002 CCGAGGCCTC GCGCTTCCXX X ^Adi001 CCGAGGCCTC GGACTTCCXX X ^Aru127 CCGAGGCCCT CCATCTCCXX X ^Aru001 CCGAGGCATT CCATCTCCXX X ^Ama006 CCGGAAXCTC GCATTTCTCX X ^Smi165 CCAAACCCTC GCATTTGCXG X ^Aga001 CTGAGGCCTC ACATCTCCXX X ^Ama018 CCGGAAXCTC GCATTTCTCX X ^Aga002 CTGAGGCCTC ACATCTCCXX X 1745 14 50 116 17 4 9 2 2 6 1 2 1 9 1 11 1 1 18 3 3 10 75 P ^Age001 AAAGTGTTGT ATTTGCTCTA TAATCGCTGC TTTTGCGGGT GTGATGCCCX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 AAAGTGTTGT ATTTGCTCTA TAATCATGAG CACCATCACC CAXXXXXXXG GTAAGCAATT GTCTGAATGA XXXXX ^Adi001 AAAGTGTTGT ATTTGCTCTA TAATTATGAG CACCATCACC CAXXXXXXXG GTAAGCAATT GTCTGAATGG XXXXX ^Aru127 AAAGTGTTGT ATTTGCTCCG CGGCCGCTGC TACCATCACC TGGAAAXXXG GTAAGCAATT GTCTAGGXXA CTXXX ^Aru001 AAAGTGTTGT ATTTGCATTA CGGCCGCTGC TACCATCACC GGGAAAXXXG GTAAGCAATT GTCCAGGXXA CTXXX ^Ama006 AAAGTGTTGT ACGCATTTTA TAATCGCTGC CTCCATCACC GGGATAXXXG GTAAGCAATA TXXTGGGXXA CGXXX ^Smi165 AAAGTACAAX XTTXXXTCTG TAGXCGCGTX CTTTATCATX GGGXTACGXG GTAAAAGXXT GXXTAGGTCA XXCXX ^Aga001 AAGAXGTAAT CTTTGTXCTA TGATCGTGGC CACCGTCACC GGGAAAXXXG GTGXGGXXXT GTTTGGXXXA CGXTX ^Ama018 AAAGTGTTGT ATGTATTCTA TAATCGCTGC CTCCATCACC GGGATAXXXG GCAAGCAATT TXXTGGGXXA CGXXX ^Aga002 ATAATGCTAT CTTTGTTCTA TAATCGCTGC CTTCACCTCC GGXXTAXXXG CTAAGCAAGT GXXTAAGTGA XXXXX 1720 6 2 1 3 60 2 3 1 110 1 1 3 1 1 1 1 1 3 1 2 1 2 1 1 9 1 1 1 1 1 17 1 8 1 1 66 1 9 4 1 1 2 4 2 1 1 5 404 414 2 1 3 39 7 1 3 1 1 1 1 2 1 1 1 1 1 25 2 1 14 1 384 1 6 10 23 P ^Age001 CGATATAAAG TACTGACCAG GTA ^Adi002 CGATATAAAG TACTGACCGC ACG ^Adi001 CGATATAAAG TACTGGAAAG ACG ^Aru127 CGATATAACT CGTGAACCAG ACG ^Aru001 CGATATAAAG TACGAACCAC ACG ^Ama006 CGATATGTAG TGTTAACCGG GCG ^Smi165 CGATGAAAAG AATTAAAGGG ACT ^Aga001 CGACAAATAG TGTTAACCAG ACG ^Ama018 CGGTATAAAT TACGAACCAG GCG ^Aga002 CTACAAATAG TGTTAACCAG ACG 1068 2 3 3 29 1 1 2 4 1 1 2 1 1 1 4 2 1 1 1 1 9 1 10 30 P ^Age001 GTCGCCTTCT CTAGAGAAAC TCAATATAAX ^Adi002 GTCGCCTTCT CTAGAGAAAC CTTGCGCGGX ^Adi001 GTCGCCTTCT CTAGAGAAGT TCTGCGCGGX ^Aru127 GTCGCCTTCT CTAGACGCAC TCAATGCGCX ^Aru001 GTCGCCTTCT CTAGTGGCAC TCAATGCGCX ^Ama006 GTCGCCTTCC TCCXAGAAAC TCAATATGGX ^Smi165 GTCGCCAATT CCGGAGACAT TTAACGCGGX ^Aga001 GTCGATTTTT TCAXAGAAAC TCACTACGGX ^Ama018 GTGACCTTCT TCAGAGAAAC TCAATACGGX ^Aga002 GCCACTTACT TCAGAGAAAC TCAATACGGX 1992 2 5 1 4 2 46 1 1 3 10 3 1 3 2 3 3 1 2 1 5 1 4 1 1 1 1 8 1 3 10 13 P ^Age001 TCCAACTACG GGX ^Adi002 TCCAACTACT TAX ^Adi001 TCCAACTAGG TAX ^Aru127 TCCAACTTCG GAX ^Aru001 TCCAACATCG GAX ^Ama006 TCCAGTTACG GAX ^Smi165 TCCGACTACG GAA ^Aga001 TTTAACTACG GAX ^Ama018 TCCAATTACG GAX ^Aga002 TCTAACTACG GAX 747 1 4 30 1 3 2 2 1 7 4 5 3 10 36 P ^Age001 AGACTTGAAT CTTTGCGTCG GGGTGTAAGA AXXXXX ^Adi002 AGACTTGAAT CTTTGCGTCG TAACACGGAG CXXXXX ^Adi001 AGACTTGAAT CTTTGCGTCA GGACACGGAG CXXXXX ^Aru127 AGACTTGAAT CTTAATCATG GGGTGCGGAG TTCAXX ^Aru001 AGACTTGAAT CTGTGTCATG GGGTGCGGAG TXXXXX ^Ama006 AGACTTGAAC TCTTACCATG GGGTGTGGAG TTCAXX ^Smi165 AGACTAAGCT CCTTGCGTTG GGGTATAAAG TXXXXX ^Aga001 AGATCTGACT CTTTGCCGTG GAGTGCGGAG TXXXXX ^Ama018 AGGCTTATCT TTTTGCCATG GGGCGTAGGG TTTXAX ^Aga002 AAACCTGACT CTTTGCCGTG GAGTGCGGAG TXXXXX 2085 2 28 6 2 35 45 5 1 3 1 1 1 1 2 2 1 1 1 2 1 1 4 1 1 1 2 2 1 28 1 83 23 2 5 1848 10 18 P ^Age001 TGAGTGACCG CCACCGGX ^Adi002 TGAGTGACCG CCCTTACC ^Adi001 TGAGTGACCA ATATTAAC ^Aru127 TGAGTGGTTG ATACCAAC ^Aru001 TGAGTAACTG CCACCACC ^Ama006 TGAGGGACCG ATACCAAC ^Smi165 TGAATGACCG CTACTACC ^Aga001 TGGGTGATCG ATACCAAC ^Ama018 TAAGGGACCG ATACCAAC ^Aga002 TGGGTGATCG ATACCAAC 754 2 3 27 5 2 2 1 5 4 1 2 1 6 2 7 1 3 10 71 P ^Age001 CATTGAATCA TCCCATACCC GTCCTGCCCG GAGCCCATTG ATATGGAXXX XXXXXXXXXX XXXXXXXXXX X ^Adi002 CATTGAATCA TCCCATACCC GTCCTATTTA TGATTTGCGA GCGGAXXGCC TCAGAGAACT CGATGGXXXX X ^Adi001 CATTGAATCA TCCCATACCC GTCCCGCCCG GAATTTGCGA GCGGAXXGCC TCAAGATGGC TATXXXTXXX X ^Aru127 CATTGAATCA TCCCATGTTT ACATTGCCCG GGGCCCATTG GCGCTXXGTX XXXGGATTTX XXXXXXXTCX X ^Aru001 CATTGAATCA TCCCGAACCT ACATTGCCCG GGGCCCATTG GCGTTXXGCC XXXAAAXGAC AXXXXXXXXX X ^Ama006 CATTGAATCG ATGTAXATXC GTCGTGCCCG GAGCCCGCAX GCGTGXXXXX XXXXXXXXXX XXXXXXXXXX X ^Smi165 CATTGAGCTA TCCTATACCC GCGCTGCCTA AAGCTAACGA ACCACGTGCC TTXAAATGAC AAXTTXXAXA X ^Aga001 CATTATATTA TTTCATACCC ACACTGCCCG GAGTCCATGA GCGACXXGCC XXXAGAXGAC AXXXXXXXXX X ^Ama018 CATCGAATCA ATCTAXATXC GTCGTGCCCG GAGCCCGCAX GCGTGXXXXX XXXXXXXXXX XXXXXXXXXX X ^Aga002 CTXTGTACTA TTTCATACCC ACACTGTACA TGGTCCATGA GCGACXXGCC XXXAGAXGAC AXXXXXXXXX X 4250 10 3 3 8 16 100 1 2 2 22 1 1 1 2 1 9 1 1 17 7 9 1 1 4 6 25 2 1 1 1 1 18 1 2 1 2 1 1 1 2 32 2 1 1 2 1 8 10 1 98 15 675 4 1 7 1 5 1 1 1 2 155 15 11 1008 8 2 3 168 749 10 49 P ^Age001 CGCGTCACTT CTGAAGTGCT CGGAACAAAA TCAXXXXXXX XXXXXXXXX ^Adi002 CGCGTCACTT CTGAAGTGCT CGAGGTGGCC XXXAAGTTGA GTTGAAXXX ^Adi001 CGCGTCACTT CTGAAGTGCT AAGGGTGGCC TCGAAGTTGA GTTGGGXXX ^Aru127 CGCGTCACTT CTGAAGTTAX CGGAATGGCG TCGAAGTTGA GCGXAGGXX ^Aru001 CGCGTCACTT CTAGGXXGAT CGGAGCGGCG TCGAAGTTAC CTGGAGXXX ^Ama006 CGCGTCACGC AXGGGXXGCT CGGAGCGGCG TCGAAGTXGC CTGGAGXCX ^Smi165 CGCGTCATTT TTGAGGCGCT CGGAGCAGCG TCGAAGCTAC CTGGAGXXX ^Aga001 CGCGCTXCTT CTGGGXXGCT CGGAGCGGCG TCGAAATTGC CTGGAGXXX ^Ama018 CGCTTCACTC AXGGGXXGCT CGGAGCGGCG TCGAAGTXGC TTGGAGXCX ^Aga002 CAXGTTACTT CTGGGXXGCT CAGAGCGGTG TAGATGTTGC CTGGAGXXX 820 1 3 1 7 3 3 25 1 9 1 5 11 11 5 7 2 11 3 6 4 1 8 7 1 1 1 12 1 1 1 1 1 130 3 1 5 3 1 1 1 3 1 1 1 2 1 2 6 10 39 P ^Age001 TATGGTACCA ATCAGATTGC GTAAAACCAA CAXXXXXXX ^Adi002 TATGGTACCA ATCAGATTGC GCCGGGGTGT GXCCGCAXX ^Adi001 TATGGTACCA ATCAGATTGG CTAAGGGTGT AACCXXXXX ^Aru127 TATGGTACCA ATCAAGCCTC GTCGAACCGT GACCGCCTX ^Aru001 TATGGTACCA ACTTGACCTC GTAAAACCGT GACCXXXXX ^Ama006 TATGGTATTG CTCAGATCTC CTCGAACTGT GACTGTCTX ^Smi165 TATGGCGCCG GTTGGGTTTC GTAAAAATAT GACCXXXXA ^Aga001 TATTATGCTA CTTAGATCTC GTAGAACCGT GACTXXXXX ^Ama018 TGXGGTATTG CTCAGATCTC GTCGAACTGT GACTGTCTX ^Aga002 TATGATGCTA CTTAGATCTC GTAGATCCGT GACTXXXXX 1263 4 3 2 8 66 1 11 8 1 1 1 1 1 5 1 8 1 1 3 2 4 3 1 10 1 1 1 1 25 1 3 2 1 72 2 1 6 12 10 128 P ^Age001 TGCGAGTATG CTACACCACC CAGCCCAAGT GACGAGCGGA ATTAAGTCAA CAGCTTTAGG TCTTTAGTCG TCAGACATGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX ^Adi002 TGCGAGTATG CTACACCACC CAGCCCAAGT GACGAGCGGA AACGGTCGGG GGAGCACTCA CACGGCAATA XXXXXXXXXA TAGCTGGACC TGAGTTGAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX ^Adi001 TGCGAGTATG CTACACCACC CAGCCCAAGT GGTTGTGAXX XTTGGTCGGG GGAGCACTCA CACGGCXXXX XXXXXXXXXA TAGCTGGACC TGAGTTTCCT CGATACAAAA GAXXXXXXXX XXXXXXXX ^Aru127 TGCGAGTATG CTACACCACC CAGGTACGCC CACGGTGCXX XTTAAGTCAA CGAGCACTCA CACGGGXXXX TTGXXXXXXA TAGCTGGACC TGAGACTCCT CGATACAAAT AGAAAGACTX XXXXXXXX ^Aru001 TGCGAGTATG CTACACCGTT AGACCCCGCC AACGAGGGGA TTGAAGTCAG AAAGCACTCA CACGCGGTTA TTGGAACXXA TAGCTGGACC TGAGACGTCT CGGGGXXXXC XXAAACCTXC AGATGXXX ^Ama006 TGCGAGTATG CTATCTTACC CAGCCCAAGC GACGATGCXX XTTAAGCGGG CGGCCACTCA CACGGGXXXX XXXXXXXXXA TAGCTGGACC TATATTTCCT CGATACAAGA AGAACGAATC GXXXXXXX ^Smi165 TGCGAGTACT TCXCACGACC CAACTGAGAC AACAAGCAGC GTTAAATCGG CAATTACTCA CAGXGGGXCA TCGGXAXTXA TAGCTGTGTG XGAGTTGXAX XXXXXXXXXX XXXXXXXXXX XTXXXXXX ^Aga001 TGCCGAAXTG TAACATCACT TXGCCCAAGC GACGGTXCXX XTXACGTGGX TGGCCTTACA GTCGGGXXXX XXXXXXXXXA TAATCAGATT TACCGGACCT XXAXXCXXXX XXXXXXXXXX XXACXGTX ^Ama018 TGAGAACATG CTACCTCATC CAGCCCAAGC GAGGATGCXX XTTAAGCGGG CGGCCTCGCC TTCGGGXXXX XXXXXXXXXA AXGTGXGTCA TTATTATCCT CXATXCAXXA AXAXXGXXXC GXXXXAXX ^Aga002 TACGGAAXTT TAACATCACT TXGCCCAAGC GACGGTXCXX XTXACGTGGX TGGCCTTACA GTCGGGXXXX XXXXXXXXXA TAATCAGATT TACCGGACCT XXAXXCXXXX XXXXXXXXXX XXACXGTX 5031 4 10 3 28 1 2 22 168 1 1 1 1 5 15 6 1 17 1 4 5 19 1 26 1 1 34 3 1 2 1 4 1 1 1 64 2 1 63 3 1 1 1 37 1 2 1 1 2 1 1 1 1 1 8 2 3 1 71 1 1 1 2 4 1 2 1 1 1 3 4 1 1 18 4 1 1 5 11 34 23 3 20 15 13 5 3 1 1 1 1 1 1 1 1 1 1 1 1 11 53 1 11 28 1 20 126 6 1 1 1 1 1 7 1 3 10 1 1 1 2 1 27 16 45 8 210 230 10 27 P ^Age001 CAGGCCAGTG ATAAGGAGAA AXXXXXX ^Adi002 CAGGCCAGTG ATAAGGAGGG GCCACXX ^Adi001 CAGGCCAGTG ATAAGGCAAG GXXXXXX ^Aru127 CAGGCCAGTG TCGGAAAAAG GCCCXTX ^Aru001 CAGGCCAGTA ATGGAAAGAG GCCCXXX ^Ama006 CAGGCCAAAG ATGGAAAAAG GCCCXXX ^Smi165 CAGGTTXGTG ACAAATAAAG GXXXXXG ^Aga001 CAGACCAGTG ATAAGGAGAA GXXXXXX ^Ama018 CAAGCTAGAG ATGGAAAGAG GCTCXXX ^Aga002 CGGGCCAGTG ATAGGGAGAG GCCCXTX 829 2 1 1 25 1 3 1 1 1 3 1 1 1 1 1 3 1 3 1 1 85 1 1 3 9 87 10 19 P ^Age001 AGTCATGTTG GTTTGGGTG ^Adi002 AGTCATGTTG GTTTAAACX ^Adi001 AGTCATGTTG GTTCAAACX ^Aru127 AGTCATGTTA ACCTGGACX ^Aru001 AGTCATGTGG GCCTGGACX ^Ama006 AGTCAAAATG GTCTGAACX ^Smi165 AGTATTGTTG CTTTGGAGX ^Aga001 AGACGTAATG GTCTGAACX ^Ama018 AGTCAAAATG GTCTGAACX ^Aga002 ATACATGATG GTCTGAACX 1639 2 9 43 1 5 1 1 1 7 1 1 1 4 7 1 8 2 6 10 16 P ^Age001 GAGCTGCAAG TGCATC ^Adi002 GAGCTGCAAG TGCGGT ^Adi001 GAGCTGCAAG TGTGGT ^Aru127 GAGCTGTGGC CACAGT ^Aru001 GAGCTGCAGC CACATT ^Ama006 GAGTCACAAG CACAGT ^Smi165 GATCCCCAAA TATAAT ^Aga001 GAGCTGCAAG CACAGT ^Ama018 GAGTCGCGAG CACAGT ^Aga002 GTGCTGCAAG CACAGT 820 1 24 2 2 1 2 1 3 1 3 1 1 5 1 5 10 54 P ^Age001 GCAGCGGAGG TTCCCCCTAC AAGGTGGACT XXXXXXXXXX XXXXXXXXXX XXXX ^Adi002 GCAGCGGAGG TTCCCCCTAC GGCACCAGXX TTGTGGTTTT CAGCGAGTAC GXXX ^Adi001 GCAGCGGAGG TTCCCCCTGT AAGACCAGCC TTGTGGTTXX XXXXXXXXXX XAXX ^Aru127 GCAGCGGAGG TTCCATACAC AACGTGACXX TTGTGTAXTT CAGCGGAGGT AXGX ^Aru001 GCAGCGGAGG TATTCCCCAC AGCGCTACXX TTGTGTAXTT CAGCGAGGGT AXXX ^Ama006 GCAGCGGAAC CTCTCCACAC AACGTGACXX XXXXXXXXTT CAGCGAGGGT AXXX ^Smi165 GCAGCATTGG ATCCCCCTAA ACCGCGACXX TTGCATAXTT CAGTXAGTAT AXXX ^Aga001 GCAAAGGGGG TTCCCCCCAC AACGCTACXX TTTTATAXTT CGXCGAGTGC AXXX ^Ama018 GCGGCGGAGC CTCCCTACAC AACGTGACXX XXXXXXXXTT TAGCGAGGGT AXXX ^Aga002 GTAGAGCAGG TTTCCCCCAC AACGCTACXX TATTATCXTC CAGCGAAGGT AXXX 1543 4 3 1 3 34 1 1 3 1 1 8 1 1 3 1 1 1 4 1 2 1 34 6 3 1 9 2 161 19 80 1 4 2 1 1 1 3 321 1 1 1 3 3 9 1 1 4 1 1 7 96 12 67 10 39 P ^Age001 ACATGTTTAC ATCAGCGCAT TXXXXXXXXX XXXXXXXXX ^Adi002 ACATGTTTAC ATCAGCGTTC GXXXXXXXXX XXXXXXXXX ^Adi001 ACATGTTTAC ATCAGCGCTC GTTAGTTTXX XXXXXXXXX ^Aru127 ACATGTTTAA CCTGXXXCAT GTTCTCAXAA CTXXXXXXX ^Aru001 ACATGTTTAA CCTGGXXCAT GTTCTCAXAX XXGTXXXXX ^Ama006 ACATGTTCGC ACTGXXXCAT GTTCTCAXAA CTXXATXXX ^Smi165 ACATACXTAC XTTTXCTCAT GTGATGXXXX XXXXXXXXX ^Aga001 ATXXGXTTXX AXXXGXXCAC XXXXXXXXXA CCGXCGCGX ^Ama018 ACACGTTCGC ACTGXXXCAT GTTCTCAXAA CTXXATXXX ^Aga002 ATXXGXTTXX AXXXGXXCAT XXXXXXXXXA TCGXCACTX 444 1 397 1 11 3 69 3 4 2 1 43 3 3 2 43 6 1 1 1 2 9 3 5 7 9 3 42 7 62 2 55 3 6 2 1 255 1 3 10 23 P ^Age001 AAGACGACAC CGCGAAGAGA GAX ^Adi002 AAGACGACAC CGCGAAGGAG CXX ^Adi001 AAGACGACAC CGCGAATGAG CXX ^Aru127 AAGACGACAC CTTAGGGAAG CXX ^Aru001 AAGACGACAC TGCAGGGAAG CXX ^Ama006 AAGACGACGT CGCGAGGAAG CXX ^Smi165 AAGATATTAT TGTGCGGAGG CXG ^Aga001 AAGGCGATAC CGCGAGGAAG CXX ^Ama018 AAAACAGCAC CGCGAGGAAG CXX ^Aga002 AGGACGACAC CGCGAAGAAA CXX 1004 1 5 4 41 1 1 2 1 1 1 2 2 5 1 1 1 2 1 1 8 9 3 10 29 P ^Age001 TTAAAAGTGA TACCGTATCC CCXXXXXXX ^Adi002 TTAAAAGTGA TACCGTTCTT AXTTTGAXX ^Adi001 TTAAAAGTGA TACTAXACTT XXTTTAXXX ^Aru127 TTAAAAGTGA CTTCGXATCT XXTTTAXXX ^Aru001 TTAAAAGTGA TTTCGXATCT XXTTTAXXX ^Ama006 TTAAAAGCAT TACCGXATCT XXTTAAXXX ^Smi165 TTAAGGATAG TACCAXATTT XXTCTAXXX ^Aga001 TTAGAGATGA TATCGXATCT XXTTTAXTX ^Ama018 TTGAAAGCAA TACCGXATCT XXTTAAXXX ^Aga002 TCAGAAATGA TACCGXATCT XXTTTAXXX 3325 3 1 7 82 1 1 9 3 1 1 9 1 2 1 58 3 8 2 17 59 84 286 6 1 1 3 9 237 10 37 P ^Age001 TCAAAAGGGG GCTCAGGACC TCCCCTGGGC CAATAXX ^Adi002 TCAAAAGGGG GCTCAGGACC TCCCCTTCAG AGGCXTX ^Adi001 TCAAAAGGGG GCTCAGGACC TCCCCGGCAG AGGCXTX ^Aru127 TCAAAAGGGG GCTCAGGGTT CTATATGGGC CAGCXTX ^Aru001 TCAAAAGGGG GCCTGTCACC TCCTATGGGC CAGCXTX ^Ama006 TCAAAAGGGA CGTCAGGACC TTACATGGGC CGGCXTX ^Smi165 TCAAGGXXXG XXTCGCXACT XCXCXXXGAT XAGXXXX ^Aga001 TCAGAAGGCG GCTTAGGACC TCCTATGGGC CAGCXTX ^Ama018 TCGAAAGAGA GGTCAGGATC TTACATGGGC CGGCXTX ^Aga002 TGAAAGGGCG GCTTAGGACC TCCTATGGGC CAGCXTX 849 8 1 3 40 1 671 3 4 2 1 1 5 1 2 1 9 8 1 2 4 1 2 1 2 1 1 3 2 1 8 1 12 13 9 6 4 10 49 P ^Age001 CTGGGTGTGT TACCCGGTTG GGTATGGATC XXXXXXXXXX XXXXXXXXX ^Adi002 CTGGGTGTGT TACCCGGTAC AACTACTXXX TTAATCATCT ACCGATXXX ^Adi001 CTGGGTGTGT TACCCGGCTC AACTACTXXX TTAATCATCT ACCGAGXXX ^Aru127 CTGGGTGTGT TGTTTAATTG GACTATCXXX TTAATCATTC GXXXXXXXX ^Aru001 CTGGGTGTGA CATTTAATTG GACTATCXXX TTAATCATCC GXXXXXXXX ^Ama006 CTGGGTCCCT TACCCAATTG GACTACCXXX TTAATCATCT GCCGGGXXX ^Smi165 CTGGAXGTGT XACTXAXTTG AGCCXTCACX TTAAGTXXCX XCCAGGCXX ^Aga001 CTAAGTGTCT TACCCAATTG GACTACCXXX TTACTTACCT GCCGAGXXX ^Ama018 CCGGGTGCCT TACCCAATTG GACTACCXXX TTGATCATCT GCAGAGXXX ^Aga002 CTGAGTGTCT TACCCAATTG GACTACCXXX TCAATCACCT GCCGAGXAX 2428 4 1 7 55 191 4 1 2 5 2 8 7 4 1 1 1 1 3 10 5 3 45 3 33 1 1 537 56 33 156 1 1 10 3 1 111 1 1 1 1 125 2 3 1 1 1675 3 881 10 45 P ^Age001 AACTGTAAGC GACGAGTGGT XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 AACTGTAAGC GACGCAGAXX TCACAACCGG AXXXXXXXXX XXXXX ^Adi001 AACTGTAAGC GACACAGAXX TCACAACCGG TXXXXXXXXX XXXXX ^Aru127 AACTGTAAAT TGTGAAGAXX TCACAACTAA AXXXXXXXXX XXXXX ^Aru001 AACTGTAGGC GGTGAAGAXX TCACAGXTAA AXXXXXXXXX XXXXX ^Ama006 AACTGTGAGC GAGGAAGAXX TCAAGACCGA ACCCAATTAC AACXX ^Smi165 AACGAXAAGC XACXAAAXGX TCTCAACCAA ACCCTGCXXX XXXXX ^Aga001 AATTATAAGC GACGAAGAXX TGACGACCGA AXXXXXXXXX XXXXX ^Ama018 AACTGTGAGT GACGAAGAXX TCAAGACCGA AXXXXXXTAC GXXXX ^Aga002 ATTTATAAGC GACGAAGAXX TGACGACCGA ACTXAGXTTX XAXAX 1245 1 3 32 1 68 2 2 1 1 1 2 1 1 3 9 1 3 1 299 264 1 17 1 1 3 3 1 1 3 2 12 4 53 1 2 3 4 2 133 2 1 47 52 12 10 12 P ^Age001 TACCGACTCC AX ^Adi002 TACCGACCTT CX ^Adi001 TACCGAACTT CX ^Aru127 TACCGGCTCC CX ^Aru001 TACCGACTCC CX ^Ama006 TACTAACTCC CX ^Smi165 TAGCGACTTT CX ^Aga001 TCCCGACTCC CX ^Ama018 TACCAACTCC CX ^Aga002 TACCGACTCA CX 1013 2 14 2 6 2 1 5 1 1 6 342 10 28 P ^Age001 GTTAGTTCTG GTGTAGCTGG CGCAXXXX ^Adi002 GTTAGTTCTG GTGTAGTAAT AATTXXXX ^Adi001 GTTAGTTCTG GTGTGACAAT AATTTATX ^Aru127 GTTAGTTCTG GGACAACTGG AATTTAGX ^Aru001 GTTAGTTCTG TTACAACTGG AATTTAGX ^Ama006 GTTAGTTTCA GTGCAACTGT CGTTTGGX ^Smi165 GTTAGAACTG GTGCAGCTAT CTCTXXXX ^Aga001 GTTCATTCTA GTGCAGCTGT CGTTXXXX ^Ama018 GTCAGTCCCA GTGCAACTGT CGTTTGGX ^Aga002 GGTAATTCTA GTGCAGCTGT CGTTXXXX 1315 2 1 3 2 28 1 5 2 3 2 2 7 1 2 2 1 6 1 1 2 1 3 14 82 1 1 9 10 15 P ^Age001 TGAGCAATAG ACTTX ^Adi002 TGAGCAATAG TTAGX ^Adi001 TGAGCAATAA TTAGX ^Aru127 TGAGCAGCGG ACTGX ^Aru001 TGAGCTACGG ACTGX ^Ama006 TGAAAAATGG ACAGX ^Smi165 TGCGCAATAG ATAGX ^Aga001 TAAGCAATGG ACAGX ^Ama018 TGAGAAATGG ACAGX ^Aga002 TAAGCAATGG ACAGX 868 5 20 3 2 2 2 5 3 1 7 1 1 10 3 10 28 P ^Age001 GGCATTTATT CCTAGCGAXX XXXXXXXX ^Adi002 GGCATTTATT CCTATTAXXX XXXXXXXX ^Adi001 GGCATTTATT CCTATTAXCG GAATXXXX ^Aru127 GGCATTTATT CCAGGCAXXX XXXXXXXX ^Aru001 GGCATTTATT CTTGGCAXXX XXXXXXXX ^Ama006 GGCATTCGCG XCTAGCAXXX XXXXXXXX ^Smi165 GGCACCTACC XTTAGCAXCG AGGAACCX ^Aga001 GGAGTCTATT CCTAGTAXCG GAGCXXXX ^Ama018 GGCATTTGCG XCTAGCAXXX XXXXXXXX ^Aga002 GTCGTCTATT CCTAGTAXCA GGGTATXX 1042 3 1 3 26 1 1 4 1 1 3 1 3 1 6 1 9 3 15 1 2 1 1 1 105 12 570 117 10 49 P ^Age001 TTTTCCATTG TAGTGACCAG GTGGGAAGCA GTAAATGCAT ATGXXXXXX ^Adi002 TTTTCCATTG TAGTGACCAG GTGGGAAATG AAGGTCATTG TXXATTTTX ^Adi001 TTTTCCATTG TAGTGACCAG GTGGGGGGCG AAGGTCATTG GXXATTGXX ^Aru127 TTTTCCATTG TAGTGGTTGA CCAAAAAGCA GTAGTCATGA GTXATCTXX ^Aru001 TTTTCCATTG TAACCACTGA CCAAAAAGCA GTAGTCATGA GTXXXXXXX ^Ama006 TTTTCCACCA CGGTGACCAG GTAATAAGCA GTGAATATAG GTXATTTXX ^Smi165 TTTTTTXTTG CCGCAATCGA CAGAAAGGTA ACAATCGTTG GTXXXXXXX ^Aga001 TTTCCCATTA CAGTGACCAG CTAATAAGCA GTGGACATAG GTXAXTTXX ^Ama018 TTCTCTATCA CGGTGACCAA GTAATAAGCA GTGAATATAG GTXATTTXX ^Aga002 TCTCCCATTA CAGTGACCAG CTAATAAGCA GTGGACATAG GTXATTTXX 6583 2 5 22 126 1 3 3 11 9 4 1 4 1 1 3 1 41 14 1 1 2 1 7 2 28 2 2 1 30 11 1 1 1 1 1 4 42 1 2 1 3 3 58 3 1 1 24 12 10 27 P ^Age001 CTGGCAAGCT GTCCCAAGAT TTAGGTT ^Adi002 CTGGCAAGCT GTCCCTGAGC CCTATCX ^Adi001 CTGGCAAGCT GTCCAAGAGC CCTATCX ^Aru127 CTGGCAAGCT GCTACAAGAT TTAATCT ^Aru001 CTGGCAAGCT ATTACAAGAT TCTATCX ^Ama006 CTGGCTGTXX GTCCCAAGAC XXXATCX ^Smi165 CTGATAAGCC GTCCCAAGGT TTTGTGX ^Aga001 CTAGTAATCT GTCTCAAAAT TCTATCX ^Ama018 CCGGCAGGCT GTCCCAAGAC TTAATCT ^Aga002 CTAGCAATCT GTCTCAAAAT TCTATCX 1437 2 3 43 1 4 4 1 41 2 1 2 3 1 2 1 2 2 1 1 1 1 3 1 8 1 78 10 58 P ^Age001 TCGTTGCCCC CCTGTCCAGT ACTCGCTAGG ATACCGGTGX XXXXXXXXXX XXXXXXXX ^Adi002 TCGTTGCCCC CCTGTCCAGT ACTTATGGAT GCGATTAAXA TGCTAACTGX XXXXXXXX ^Adi001 TCGTTGCCCC CCTGTCCAGT ACCTATGGAT GCGATTAGXA TGCAXXXXXC XXXXXXXX ^Aru127 TCGTTGCCCC CCTGTCCAAC GACCGCGGAT GCGATTCGXA TGATAACCXX XXXXXXXX ^Aru001 TCGTTGCCTT TTCTGTAXGT GXTCATTAGG GCGAXXCTXA TXXTAACCXX ACXXXXXX ^Ama006 TCGTTGCTCC CCTGTTTAGT ACTCGCGGAT ACGATTAGXA TGTTAACTXX AXTGXXXX ^Smi165 TCGTTAGCCC CTCACTGAGT ACTCGCTGAA GTGTCAGGXA XXXXXXXXXX XXXXAXXX ^Aga001 TCGTGGTCCC CCTGTTCAGC ACTCGTTAAT GCGATTATXA TGATAXXXXX XXXXXCXX ^Ama018 TCCXTGCCCT XCCTXTAAGT ACTCACGGGT GCGATTAGXA TGCTAACTXX XXXXXXAX ^Aga002 TTGTGGTCCC CCTGTTCAGC ACTCGTGGAT GCGATTAGXA TGATAATCXX AXTXXXXX 1460 1 8 8 5 31 1 2 9 58 3 1 11 2 1 1 1 11 3 1 2 1 1 7 1 1 1 2 1 1 1 11 24 1 12 1 1 1 13 13 27 17 1 3 6 31 1 1 6 3 7 126 5 3 6 6 12 54 10 27 P ^Age001 GCCCTCGGGA TCCCTTTTGT GAAGTXX ^Adi002 GCCCTCGGGA TCCCTTTTGC AGXXXXX ^Adi001 GCCCTCGGGA TCCCTTTTAC AGXXXXX ^Aru127 GCCCTCGGGA CXXXXXXXGT AGAXXXX ^Aru001 GCCCTCGGGG CCCCTTTTGT AGAXXXX ^Ama006 GCCCTCAAXA TCCXXXXXGT AGAXXXX ^Smi165 GCCCTTGGGA TCTCTTCCGT GGAGGTX ^Aga001 GCCTCCGAGA TCCCCXTXGT AGAXXXX ^Ama018 GCGCTCAAXA TCCXXXXXGT AGAXXXX ^Aga002 GGCCCCGAGA TCCCCXTXGT AGAXXXX 1387 3 1 3 4 17 4 1 6 2 4 5 1 16 1 2 1 1 1 1 2 7 6 76 2 162 159 10 34 P ^Age001 AATTGGAGAA CCGATGTATA GCATACTGGT ACXX ^Adi002 AATTGGAGAA CCGATGTATA GCATTTCTTG CAAX ^Adi001 AATTGGAGAA CCGATGTATA GGGCACCTTG CTAX ^Aru127 AATTGGAGAA CCGATGTGCC ACGCATTTTG CAAX ^Aru001 AATTGGAGAA CTACGAGACC ACACATTGTG CAAX ^Ama006 AATTGGAGCG GCACGACATC ACACATTGTG CAAX ^Smi165 AATTGTGTAA CCGATATATA ACACATTTGG CAAX ^Aga001 AATGTGAGAA GCGCAACATC ACGCACTGTT CCAX ^Ama018 AAATGGATAG GCACGACATC ACACATTGTG CAAX ^Aga002 AGTTTGCGAA GCGCAACATC ACACATTGTG CAAX 1419 1 2 2 3 34 1 1 1 4 3 3 2 5 1 1 1 9 2 5 6 10 1 1 4 8 1 1 1 2 12 1 3 12 10 25 P ^Age001 ACTCATCTAT CACACGAGTT GGTCX ^Adi002 ACTCATCTAT CACACGGACC TCAXX ^Adi001 ACTCATCTAT CACACGGACC TCAXX ^Aru127 ACTCATCTAT CAGGGAAGCC TCAXX ^Aru001 ACTCATCTAT CGCGGAAGTC TCAXX ^Ama006 ACTCATCCCA TACACAAGCT TCGXX ^Smi165 ACTAGGXTAA XACAXAACXT TXXXX ^Aga001 ACCCAGCTCA CACACAAGCT TCGXX ^Ama018 AATCGGCTCA TACACAAGCT TCGXX ^Aga002 ACCCAGCTCA CACACAAGCT TCGXX 785 3 2 12 1 1 174 1 3 8 3 2 1 1 1 1 1 1 1 2 6 6 1 3 24 10 68 P ^Age001 GGATGACGAG GCCCACATCA TTTATAGTCC TTCTCTTTTC TAATCATATA GCTGAAXXXX XXXXXXXX ^Adi002 GGATGACGAG GCCCACATCA TTTATAGTCC CCTCACCACT CGCCTTGGCC AXXXXXTTAG AAGGGXXX ^Adi001 GGATGACGAG GCCCACATCA TTTATAACTT TTTCACCACT CGCCTTGGCC AXXXXXTTAG AAGGAXXX ^Aru127 GGATGACGAG GCCCATGCTG CACCXXGTCC TTCTCTTTTC TACCTTGGCT XCAXXXTTAG TGTXAXXX ^Aru001 GGATGACGAG GCCAGCATCA CACCTAGTCA TTCTCTTACT CGCCTTGGGC AXXXXXTTAA AGTGAXXX ^Ama006 GGATGACGAG TTTCACATTG TTCCXXGTTC TTCTCTCTTT CGCCTTGGCT XCAXXXTTTA AATXAGXX ^Smi165 GGATGGGATX GCTCXCAXCG TTTCTXGCCT TXCTCGTTCC CXATTTAXXT XCAGGXXXXX XXXXXXCX ^Aga001 GGACTAGAGG GCCCACTTTA TGCCXAGTCC TTCTTTTACT CGACCTGGCC AXXXXXTAAA AATXAXXX ^Ama018 GGGTGACGAG GTCCACATCG TTCCTXGTCC TTCGCTCTTC CGCCTTGGCT XCAXXXTTTA AATGAXXX ^Aga002 GTATTACAGG GCCCACTTTA TGCCTAGTCC TTCTTTTACT CGCCTTGGCC AXXXXXTAAA AATGAXXX 4580 4 7 5 8 143 6 2 2 111 5 1 1 1 1 2 1 2 12 11 8 1 1 1 2 3 1 1 1 1 2 1 9 1 1 1 1 14 1 1 2 1 5 4 2 39 3 92 1 9 2 2 3 575 22 683 482 1 1 1 7 2 3 1 1 1089 741 2622 10 28 P ^Age001 ATCAGAGGAG CAGACACGGT AAAATTAT ^Adi002 ATCAGAGGAG CAGACACACC GGGGCCGA ^Adi001 ATCAGAGGAG CAGACATGCC GGGGCCGA ^Aru127 ATCAGAGGAG CAAGTGCGGT AAAGCCGC ^Aru001 ATCAGAGGAG CTGATTCGGT AACGCCGC ^Ama006 ATCAGAGTGC TAGACACGGT GTAACCGT ^Smi165 ATCATGAGAG TAGGCACGGC GAAGCCTC ^Aga001 ATTXGAAGAC CAGACACGGT GAAATCGT ^Ama018 ACCAGCGGGC CAGACACGGT GTAACCGT ^Aga002 ATTXGAAGAC CAGACACGGT GAAATCGT 2416 5 3 3 53 1 1 7 2 1 1 6 10 1 3 1 4 3 14 1 1 1 1 5 1 15 1 1 10 31 P ^Age001 CTACAGGGCC GCCACGAGGC GCTCAGGTTA T ^Adi002 CTACAGGGCC GCCACGAGGC GCCTGACCCG A ^Adi001 CTACAGGGCC GCCACGAGGC GTTCGACCCG A ^Aru127 CTACAGGGCC GCCATCGTAT XCTCAGGCCG C ^Aru001 CTACAGGGCC GCCCCGGTAT GCTCAGGCCG C ^Ama006 CTACAGGGTT ATTACTAGAT XCTCAGGTCG C ^Smi165 CTACAAATCC GTTACGAAGT GCTCAATCTG C ^Aga001 CTATGGGGCC ACCACTAGAT GCTTAGGCCG C ^Ama018 CTCCAGGTCT ACTACTAGAT XCTCAGGTCG C ^Aga002 CCACGGAACC GCCACGAGAT GCTTAGGCCG C 1496 2 2 5 2 45 1 1 2 4 1 1 1 3 1 1 1 1 3 1 6 3 2 1 12 1 1 1 1 11 1 10 23 P ^Age001 ACAGGCCTTA AGCTCCGATC GXX ^Adi002 ACAGGCCTTA AGCTCTAGCT XXX ^Adi001 ACAGGCCTTA AGACXTAGCT XXX ^Aru127 ACAGGCTAXX XXCTXCGGCT XXX ^Aru001 ACAGGCTATA AACTXCGGCT XXX ^Ama006 ACAGGTCTTA AGCTXCGACT XXX ^Smi165 ACAGTCCCTA GGCACCAATT GCX ^Aga001 ACAAGCCTTG AGCTCCGGCT XXX ^Ama018 ACGGGTCTTA AGCTXCGGCT XXX ^Aga002 ATAAGCCTTG AGCTCCGACT XXX 1253 2 1 1 30 3 2 1 37 1 3 1 3 1 3 4 1 1 4 7 3 18 102 10 45 P ^Age001 GTACACCGAC AGTGGGACGT CCCCCACGTA TACGTTCGAT CTCXX ^Adi002 GTACACCGAC AGTGGGACGT CCCGTGGACG GGTACCGACA ACXXX ^Adi001 GTACACCGAC AGTGGGACGT CCACTGGACG GGTACCGACA AAXXX ^Aru127 GTACACCGAC AGTGGGAGAC GACCCACGTA TATACCGACA TCXXX ^Aru001 GTACACCGAC GAGAAXXCGT GACCCACGCG GGTACCGACA ACXXX ^Ama006 GTACACCGAA AGTGGGACAC CACCCACATA TACACCGACA TCXXX ^Smi165 GTACACCGTC AGTAAGCCGT CTCCCGAATA GGTGCCGTTC CTCCX ^Aga001 GTACAATAAC AGCGAGACGT CCCCCACGTG TGTGTCAGCC CTCXX ^Ama018 GTCACCCGAA AGTGGGACAA CACCCACATT TACACCGACA TCXXX ^Aga002 GCAAGCTTAC AACGAGACGA CCCCCACGTA TATGTCAGCC CTCXX 980 7 8 4 2 4 9 1 26 6 1 1 1 5 1 1 2 2 1 1 5 1 1 3 4 1 1 1 4 1 2 1 2 33 6 9 1 2 1 2 1 1 6 6 1123 10 45 P ^Age001 TGCTCACCGG CTGCTTATGG CATXXXXXXX XXXXXXXXXX XXXXX ^Adi002 TGCTCACCGG CTGCTAGCAA TGGTGTTGGT AAACTACCCA GTTTX ^Adi001 TGCTCACCGG CTGCTTGCAA TGGTGTTGGT AAACTACCCC AAGAX ^Aru127 TGCTCACCGG CCATCTATGA TGGTGTTGGT AAACTGTTTA GAGAX ^Aru001 TGCTCACCGA TTGTCTATGG CGGTGTTGGT AAGTCACCTA GAGAX ^Ama006 TGCTCGTGCG CTGCTTATAG CGGTGTTGAC CGATCACTTA GAGGX ^Smi165 TGCCTACCCG TTCCTTACAG TAGTGTGCGT CGACTACCTA GAGGX ^Aga001 TTTTTACTGG CTGCCTATGG CAGTGTTGGT AAACCATCTA GAGAX ^Ama018 TGCTCATGGG CTGCTTATAG CGGTGGTAGC AGATCACTTA GTGAX ^Aga002 TGTTTACTGG CTGCCTATGG CAGTTTTGGT AAACCATCTA AAGAX 1366 1 6 29 1 2 8 1 1 3 1 3 1 7 2 2 7 1 1 1 1 1 12 477 1 3 23 2 1 6 5 1 3 1 1 4 1 1 4 1 6 1 3 1 178 10 44 P ^Age001 TATAACAGTG ATCCGCGCCT ATGAGCACGA XXXXXXXXXX XXXX ^Adi002 TATAACAGTG ATCCGCGCTC CCAGATTGCX AGTGCAACGC XXXX ^Adi001 TATAACAGTG ATCCGTAGCC CCAGATTGCX AGTGCAACGT XXXX ^Aru127 TATAACAGTG ATCTACGTCT ATAGATTGCX AGTGCGGTAT XXXX ^Aru001 TATAACAGTG ATTCACGCCT ATAGATTGCX AGTGCGGTAT XXXX ^Ama006 TATAGTGACC TXCCGCGCCT CXGAATTTXX AGTGGAGTAT AACX ^Smi165 TATGACAGCA GXCCGCACTT CXGAGTTTXX AGAACAATAT AGTX ^Aga001 TAGAACGACG AXCCGCGCCT CXGAATTTXX AGTACAGTCT AATX ^Ama018 TGTAATAATG TTCCGCGCCT CTGGATCGCX AATGCAGTAT XXXX ^Aga002 TAGAACGACG AXCCGCGCCT CXGAATTTXX AGTACAGTCT AATX 783 3 2 34 2 2 1 1 23 1 1 15 3 1 1 1 1 1 1 2 1 2 1 15 1 16 1 10 13 150 232 1 4 1 1 1 1 2 1 2 94 1 1 3 10 49 P ^Age001 CCCCAAGCGA ACTGTCCGAA CCACGAATAA GAAAAAAATG GTATTXXXX ^Adi002 CCCCAAGCGA ACTGTCCGAA CCACGAATAA AGGCGGGGCA ACXXXTXXX ^Adi001 CCCCAAGCGA ACTGTCCGAA CCACGAATAG GGGCGGGGCA ACXXXTXXX ^Aru127 CCCCAAGCGA ACTGTCTTGG TTCXXXXXXA GAAAGGGGCA XXAXXXXXX ^Aru001 CCCCAAGCGA ACTGCTCTGG TTCCGAAGXA GAAAGGGGCA AXATXXAXX ^Ama006 CCCCAAGCGA GTCTTCCGGG TTCCGAGTXA GAAAGGGGCA AXAXXXXXX ^Smi165 CCCCAGAGAX ACCATACGAA CTCCGGATXA AAGGAGGGGX ATAXTXXAX ^Aga001 CCCTGAGGTA ACTGTCCGAG TCCCTAATXA GAAAGAGTCA AXAXXXXXX ^Ama018 CCGCAAGCGA ATTTTCCGGG TTCCGAGTXA GAAAGGGGCA AXAXXXXXX ^Aga002 CTCCGAAGTA ACTGTCCGAA TCCCTAATXA GAAAGAGTCA AXAXXXXXX 4534 4 6 6 10 191 1 2 1 2 1 6 1 1 4 2 3 3 6 1 2 1 2 197 2 10 2 1 1 4 1 15 3 1 12 1 38 1 2 1 1 1 3 12 1 1 3 259 1175 10 40 P ^Age001 GTCTATCCAG CCGTGTCTAG ACCXXXXXXX XXXXXXXXXX ^Adi002 GTCTATCCAG CCGTGTACGA GTGCCCACTX XXXXXXXXXX ^Adi001 GTCTATCCAG CCGTGCCCGA GTGXXXXXXX XXXXXXXXXX ^Aru127 GTCTATCCAG CTAATTCTAA GTGCCCCXXX XXXXXXXXXX ^Aru001 GTCTATCTTA TTAATTCTAA GTAXXXXXXX XXXXXXXXXX ^Ama006 GTCTACXCAA TCAGXTCTAG GTGCCCCCTT AGCATXXXXX ^Smi165 GTCCXTCCGG TCTAATCTGT ATGCCTTCGT GTAXXGATXX ^Aga001 GTTTATCCAA ACAAGTCTAG GTGCCCCXXX XXXXXXXXXX ^Ama018 GCCTACXCAA TCAGXTCTAG GTGCTCCCTT ATTACGGXTX ^Aga002 GTTTATCCAA CCAAGTCTAG GTGCCCCXXX XXXXXXXXXX 1010 1 1 42 1 1 17 3 1 1 1 5 1 1 1 4 1 2 1 1 2 5 1 85 1 87 1 1 2 156 138 1 1 282 4 6 6 344 9 182 10 52 P ^Age001 ACAACACGTA CGGGACTGCT ATATGAGGAG CTGTATGTAA TCCAGCGTGT XX ^Adi002 ACAACACGTA CGGGACTGCT ATACAGCACT TCAGCAAXXX XXXXXXXXXX CX ^Adi001 ACAACACGTA CGGGACTGCT ATGTGACACT TCAGCATXXX XXXXXXXXXX CX ^Aru127 ACAACACGTA CGGGACCAGC GAATGGGGAG TCAGTGGTAA TCCGAATGAX CX ^Aru001 ACAACACGTA CGGGCTTAGC GAATGGGGAA TCAGTGGTAX XXXGXXXXXX CX ^Ama006 ACAACACGTA TACAACTGCT GAATGAGGAG CCAGCGGTAA TCTGGATGAX CX ^Smi165 ACAACTTACG CGGAATTGGA ACATCTGGGA CTAACGGTTA CXCGGCTGCX CX ^Aga001 ACAGAACAGT CGCGACTGCT GAATGAGAAG CCAGCGGTAX XXXGXXXXXX CX ^Ama018 ACTACACGTA CACAACTGCT GAATGAGGAG CCAGCGGTAA TCTGGATAAX CX ^Aga002 ATAAAATATT CGCGACTGCT GAATGAGAAG CCAGCGGTAX XXXGXXXXXX CX 4244 2 1 1 18 186 1 3 1 1 4 10 3 1 7 1 6 20 1 1 2 1 5 9 1 1 25 1 1 1 1 5 55 6 1 1 1 12 2 431 7 3 2 1 1 5 24 1 3 9 3 195 10 87 P ^Age001 ATATACAATA AGCGCAGATG GCCTGAGATG CCCCCCAGGT TGATAGGGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Adi002 ATATACAATA AGCGCAGATG GCTAACATGA TTTTTTTTTX XXXXXXXXGG GCATTTAATA TCATGCATGG TTTTATCCAG XXXXXXX ^Adi001 ATATACAATA AGCGCAGATG GTCAACATGA TTTTTTTTTT AXXXXXXXGG GCATTTAATA TCATGCATGG TTTTGCAGXX XXXXXXX ^Aru127 ATATACAATA AGCGCAGACA XCCTGAGAGA TTTTTTTTCT AGAAXXXXGG GCATTTAATA TCACCACGTA GXXXACAGXX XXXXXXX ^Aru001 ATATACAATA AGCGCAGACA GCCTGAGAGA TTTTTTTTCT AGTAXXXXGG GCATTTAATA TCXTGACGTA GXXXACAGXX XXXXXXX ^Ama006 ATATACAATA AGCGCGACTG GCCTGAGAGA TTTTTTTTCT AGATAAXXGG GCATTTAATA TTATGCATTA GTTXACAGAX TATTTXX ^Smi165 ATATACAATA ACTXXAGCTG GCCTGAAGTG CCTTTTGXGT AGATXAGCGG GCATTCGGXX XXATXCAXTX XTCXXCGXAX TACXXGX ^Aga001 ATATGGCXXX XGTGGAGATA GCCTACGATA TGCTTGTTCT AXXXXXXXGG AAGCXTGTTG XCXTGCCTTA AXXXAAAGAG TXXXXXX ^Ama018 ATGXACXATA XGCGCAAATG GCCTGXGAGA GTTTXXTTCX XGATXXXXGA GCCAGTAATA TTATGCATTA GTTXACAGAX TXXTXXX ^Aga002 ACATAGAAAX AGCGGAGATA GCCTAAGATA TGCTTTTTCT ATATXXXXGG GAACTTAATG XCXTGCCTTA AXXXACAGAG TXXXXXX 974 2 1 2 1 2 1 3 1 1 1 27 1 100 1 1 3 1 4 1 1 1 1 5 1 2 2 2 1 72 1 1 2 9 2 2 5 1 1 1 1 1 1 1 1 2 60 6 102 4 3 1 1 1 1 7 1 2 282 4 3 1 1 1 1 1 1 2 2 6 1 4 1 3 1 1 1 1 2 9 2 1 1 2 1 21 3 10 45 P ^Age001 ATCTGTCCCT CGTAACGGTC GGGTGAGCAC CACTAGGGGA CCTXX ^Adi002 ATCTGTCCCT CGTAACGGTC GGGTGCATCT TTGCGAATCX XXXXX ^Adi001 ATCTGTCCCT CGTAACGGTC GGGCTAATCT TTGCGAATCX XXXXX ^Aru127 ATCTGTCCCT CGTAACGGCA CAATGAGCAC CACTAAATCA TAXXX ^Aru001 ATCTGTCCCT CGTAACGATA CAATGAGCAC CACTAAATCX XXXXX ^Ama006 ATCTGTCCCC AACCGGCGTC GGATCAGCAC TTGCTGATCA TAXXX ^Smi165 ATCTGCTTTT CGTAGGAGTC GCATGAGCAT CTGCAAGTTA CATXX ^Aga001 ATCGATCTGT CGTCACGGTC CGATGAGTCC CACCAGATCA TATXX ^Ama018 ATATGTCCCT CACCGGCGTC GGATCAGCAC TTGCTGATCA TAXTX ^Aga002 ACCTATTCCT AGCCAGCGTC GGATGAGCCC CTTCAGATTA TATXX 3882 2 7 10 5 113 1 1 1 3 1 3 10 1 1 2 1 2 1 6 1 1 2 10 1 12 16 1 1 2 1 5 1 8 1 1 2 20 1 4 1 1 3 3 549 10 92 P ^Age001 GTCTCACTAA ACAAGGTTTA ACCGTTATTA GGAGACGGCT GCTGTGTACG GCATATAACG CATAATCTTX XXXXXXXXXX XXXXXXXXXX XX ^Adi002 GTCTCACTAA ACAAGGTTTA ACCGTTATTA GGAGGTAAGG ATCAACGTGA ATGGTGTCTA AXXXXXXXXA TTATGGGCGG TCTXXXXXXX XX ^Adi001 GTCTCACTAA ACAAGGTTTA ACCGTTATTC AACCACGGCG ATCAACGTGA ATGGTGTGAT GATGTAXXXA TTATGGTACA ATAACTGXXX XX ^Aru127 GTCTCACTAA ACAAGGTTTG TTGTCAGCXA GGTXACGGXT GCTGTCGTGA ATGGGXXATX XATATAXXXA TTATAXGCGA GAXACAXCXX XX ^Aru001 GTCTCACTAA ACAAGGTTCA ATGTCAGCTA GGAGACGGCT GCTGTGTACA ATGAATAACG CATAATCTXA XXXXXXXXXX XXXXXXXXXX XX ^Ama006 GTCTCACTAA ACCTATGACA ACCGTAGCTA GGAGACGGCT GCTGGGTAAG ATCGATTACG GATATAXXXA TTXXXXGCGG XXXXXXXXTX XX ^Smi165 GTCTCATCGG GXAAGGGCCA ACCTATGATA GAAGACGACT GTAXGGTGAA AGGTATAACG GATAATXXXA TCAXGXGAAA TTXXXXXXXX XX ^Aga001 GTCATXCTAA GCAAGTTTTA XCGGTAGCXA XGXXACXGXT XCTGTCXTAA ATGGXXXXXX XATATAXXXA TTXXXXGCGG XXXAXXXXXX XX ^Ama018 GTTTCACTAC ACATATGACA ACCGTAGCTA GGAGACGGCT GCTGGGTAAA ATCGATTACG GACAAAXXXA TTXXXXGCGG XXXXXXXXXT XX ^Aga002 GCCTTACCTA GCAAATTTCA ACGGTAGCTA GGAGATGACT GCTGTGTACA ATGGATAACG CATAATCXXA TTXXXXGCGG XXXXXXXXXX AX 3047 32 1 1 5 6 97 7 1 1 1 8 4 9 1 1 2 1 1 2 3 10 1 1 1 4 2 1 1 9 1 1 1 2 6 3 1 6 2 5 3 3 1 1 1 4 1 1 1 1 48 3 1 1 3 2 1 1 1 1 1 19 1 1 2 2 12 33 17 17 119 1 3 18 3 6 13 5 2 1 1 2 1 31 751 29 4 18 21 1317 3 32 10 50 P ^Age001 AGTGGAGTTT GGGTACAAAC TGACXXXXXX XXXXXXXXXX XXXXXXXXXX ^Adi002 AGTGGAGTTT GGGTACGGTT CATXTTAGCC TCCATTCAAA GTGGTCAGXX ^Adi001 AGTGGAGTTT GGGTACGGTT CATXTTAGCC TCCATTCAAA GTGGTCAGXX ^Aru127 AGTGGAGTTT GGTGGTAAAT CATXTTAGCC TCCATTCTGG ACATAGCXTX ^Aru001 AGTGGAGTTT GGGGGTAAAT CATXTTAGCC TTACXXXAGG ACATXXXGXX ^Ama006 AGTGGAGCCC CAGTACAAAC CATXTTAGCC GCCATTCAAA GCAATCCXTX ^Smi165 AGTACXXTTT GAGTATAGGC CATXTTAGAT TCATTAXAAA GTAGTXXGXX ^Aga001 AGGGTAATTT CGGTACAGAC CACXTTAACC TTACXXXAAA ACAGXXXGXX ^Ama018 AGTGGAGTCC CAGTACAAAC TATXTTGGCC GCCATTCAAA GCAATCCXTX ^Aga002 ATTGGAGTTC CGGTGTAAAC CATXTCAGCT TCCATTCAAG GCAGTCCGXX 1128 3 4 32 1 8 1 1 3 1 1 1 3 4 2 1 6 1 1 1 1 46 1 714 804 6 1 4 23 1 2 2 11 1 1 7 43 2 1 1 1 1 8 1 1 1 1 3 15 157 10 26 P ^Age001 AAACCTCGTC GCCTCACATG CCXXXX ^Adi002 AAACCTCGTC GCCTGGTXXX XXCCXX ^Adi001 AAACCTCGTC GCACCGTXXX XXXXAX ^Aru127 AAACCTCGTC ATCCCATXXX XXXXXX ^Aru001 AAACCTCGTA GCCTCATATG CXXXXX ^Ama006 AAACCTCAAC GCCTCATXXX XXXXXX ^Smi165 AAACTAXGGC GTCTCATATA TXXXAX ^Aga001 AAGGCTCGTC GCCTCATACG ACXXXX ^Ama018 AAACCACAAC GCCTCATXXX XXXXXX ^Aga002 AGAGCTCGTC GCCTCATACG AXCTXX 1313 1 1 4 42 1 3 6 1 6 8 1 4 1 5 3 7 9 1 1 1 12 11 1 3 111 10 18 P ^Age001 AGGAGGATTC GCTCGXXX ^Adi002 AGGAGGATTC TTCTTXXX ^Adi001 AGGAGGATTC GTCTTXXX ^Aru127 AGGAGGATGT GCTTTAAX ^Aru001 AGGAGGAATC GCTTTXXX ^Ama006 AGGAGTCTTT GCTTTACX ^Smi165 AGGGAGATTT GCCCTXXX ^Aga001 AAAAGGCTTC GCTTTXXX ^Ama018 AGGAAGCTTC GCTTTACX ^Aga002 AGAAGGCTTC GCTTTXXX 722 1 1 18 1 1 2 4 3 1 2 1 1 1 6 191 1 3 10 19 P ^Age001 TGTAATGGCT TCGGCCAGC ^Adi002 TGTAATGGCT TCGATTTXX ^Adi001 TGTAATGGCT TCGATTTXX ^Aru127 TGTAATGTTA CTCGTTTXX ^Aru001 TGTAATAGTA CTCGTTTXX ^Ama006 TGTAGAGGCA CTCGCTTXX ^Smi165 TGTTATGGCT TTTTTTGGT ^Aga001 TTCAATGGCT CTGGTTTXX ^Ama018 TGTAAAGGCA CTCGCTTXX ^Aga002 TGCAATGGCT CTGGTTTXX 1453 1 5 36 1 3 5 2 1 3 1 1 1 1 1 8 1 5 1 10 23 P ^Age001 CCTGAAACTG CGATCAAACC ATA ^Adi002 CCTGAAACTG CGATCAAGTT GCG ^Adi001 CCTGAAACTG CGATCAGGTT GCG ^Aru127 CCTGAAACTG CATCTCAACT GCG ^Aru001 CCTGAAACTG CGTCTCAACT GCG ^Ama006 CCTGAAACTA GGATCAAATT GCG ^Smi165 CCTGTGXXXG XGATXXAGCT CXX ^Aga001 CCTAAGACCG CGATCAAACT GTG ^Ama018 CCCGAAATTG CGACCCAACT GCG ^Aga002 CTTAAGACCG CGATCAAACT GTG 664 1 3 2 16 2 154 1 1 2 2 2 1 2 1 1 1 1 1 3 1 1 1 10 31 P ^Age001 TTGTACGCCA AAGTTTATGG GTTGAGXXXX X ^Adi002 TTGTACGCCA AAGTTTATGA CCCAGXATAG A ^Adi001 TTGTACGCCA AAGTTTAXXA CCCAGXATAG A ^Aru127 TTGTACGCCA GTAXXXXTGG GTTAGXATAG C ^Aru001 TTGTACGCCG ATAXXXXTGG GTTAGXATAC C ^Ama006 TTGTACCTTA AAATTTTTGG GTTAGXATAG C ^Smi165 TTGGGGGCTA AAATAAATAG GCCAGXAAGG C ^Aga001 TTATAGGCCA AAGTTAATGG TTCGGXATGG C ^Ama018 TTGTGCGTTA AAATTTTTGG GTTAGXATAG C ^Aga002 TAATAGGCCA AAGTTAATGG TTCGGXATGG C 1440 1 5 27 1 1 2 2 1 2 5 3 1 12 3 1 2 2 1 2 1 1 1 2 14 81 174 9 1 1 1 10 30 P ^Age001 AAGCGTCATT TTGATAAGAA TAAACCCTGX ^Adi002 AAGCGTCATT TTGATAAGAA CGCTTGTAAC ^Adi001 AAGCGTCATT TTGATAAGAC TGCTTGTATC ^Aru127 AAGCGTCATT TTATCGGAGA TAAATGAGTC ^Aru001 AAGCGTCATT TTGTCGGAGA TAAATGAGTC ^Ama006 AAGCGTCATG CCGATAGACA TAAACGCATC ^Smi165 AAGCGTTGAT TTGATGAAAG TAAGCGCATC ^Aga001 AAGGCXCGGT TCGACAAGAA TAGACGCATC ^Ama018 AACCGTCATT CCGATAGACA TAAACGCATC ^Aga002 ACGCCXCGGT TCGACAAGAA TAAACGCATC 1653 3 4 2 10 6 40 3 1 4 6 1 1 4 1 1 1 1 1 1 3 10 1 1 1 16 1 1 1 3 10 28 P ^Age001 CAGCCGTGGA TGGATCCGAG CAAATXXX ^Adi002 CAGCCGTGGA TGGATCTAGA TGGGCAXX ^Adi001 CAGCCGTGGA TGGATTCAGA TGGGCAXX ^Aru127 CAGCCGTGGA TTAGATCGAG TGGGCAAX ^Aru001 CAGCCGTGGA CGGGATGGAG TGGGCAXX ^Ama006 CAGCCGTAAT TGGATCCGAG CGGGGAXX ^Smi165 CAGCCACGGC TGAACTTGGT TAAGCAXX ^Aga001 CAGTTGGGGA TGGATCTGAG CGGGCAXX ^Ama018 CATCCGTGAA TGGATCCGAG CGGGCAXX ^Aga002 CGGCTGGGGA TGGATCCGAG CAGGCAXX 1474 9 3 3 2 42 1 1 5 1 4 1 1 6 1 1 1 8 1 1 1 1 1 11 1 3 3 19 10 29 P ^Age001 GAAGTTGCAT GCATTATGGT CGAXXXXXX ^Adi002 GAAGTTGCAT GCATTAAAAC AAGACGCGC ^Adi001 GAAGTTGCAT GCATTGTGAC AAGXXXXXX ^Aru127 GAAGTTGCAT GCGCAATGGT AAGACGCAA ^Aru001 GAAGTTGCAT GGACAATGGT CAGXXXXXX ^Ama006 GAAGTTGCAC ACGTAATGGT CAGACCTGA ^Smi165 GAAGACTTTT GCATTATAGC AGGATGTGA ^Aga001 GAATTTGTGT ACGTAATAGT CAGACGCGA ^Ama018 GACGTTCCAC ACGTAATGGT CAGACGTGA ^Aga002 GCAGTCGCAT ACGTAATGGT CAGXXXXXX 1014 2 1 6 36 1 1 1 1 4 1 2 1 3 1 2 3 1 3 1 1 1 5 94 2 2 2 1 1 10 32 P ^Age001 TGTCCAGATC CCGTGAACGG GGCTGGGACC GX ^Adi002 TGTCCAGATC CCGTGAACGG AAACATATTT XC ^Adi001 TGTCCAGATC CCGTGAACGG GAACATATTT XC ^Aru127 TGTCCAGATC CCGTCCGAAA GGCTGGATTT XC ^Aru001 TGTCCAGATC CAACGCGAAA GGCTGGATTT XC ^Ama006 TGTCCAGGCT TCGTGAGAAT GGCTGGATTT XC ^Smi165 TGTCCGAATT TCGTGAACAA GGCTAAGTTG XC ^Aga001 TGTAGATATC TCGCGAACAG GGCCGGGTTT XC ^Ama018 TGCCCAGACT TCGTGAAAAT GGCTGGGTTT XC ^Aga002 TTTCGAGATC CCACGAACAG GGTCGGGTGT XC 1566 3 1 5 8 58 1 4 3 2 1 6 1 1 6 4 1 4 1 1 3 8 1 2 1 1 1 11 1 1 3 3 10 67 P ^Age001 TGTAGGATAA ACGTAACAAC ATATTGAATC TCAGAAAAAG CCATTGATGC GAATTXXXXX XXXXXXX ^Adi002 TGTAGGATAA ACGTAACAAC ATATTACGGT GAGAGGXXXX XXXXXXXXXX XXXXXAXXXX XXXXXXX ^Adi001 TGTAGGATAA ACGTGGXXXX XXXXXGCGGT GXXXXXXXXX XXXXXXXXXX XXXXXAXXXX XXXXXXX ^Aru127 TGTAGGATAA ACACAGCAAC AGTCAGAATT GCAGGTAAAG CCATTGAAAG ACGAGATTGG CGGTXXX ^Aru001 TGTAGGATAA CGACAGCAAC ATACAGAACT GCACGTAAAG CCATTGGTGG ACGAGATXXX XXXXXXX ^Ama006 TGTAGTTCGC ATGCAGCAAC GTACAGAATC GCAGGTAAAG CCTCCXATCC GCGAGATTGG CGAXGXX ^Smi165 TGTTCGATGG ACGCAGCAGX ATATXGAGTC GCCGGTAAAG TXATGGATGC AAGAAATTTX XXXXXGX ^Aga001 TGGACGACGA ACGCAGCGAC ATACAGAATC GCAGGTAAAA CCACTGATGC ACGAGATXXX XXXXXXX ^Ama018 TGTAGGTCGA ACGCAGCAAC GTGCAGAATC GCAGGTAAGG CCACTGATTC ACAAGATTGG GXXXXXX ^Aga002 TTGAGGACGA ACGCAGCGAC ATACAGAATC GCAGGTAGAA CCACTGATGC ACGAGATXXX XXXXXXX 254 1 1 15 1 8 1 1 1 1 2 1 1 2 3 1 101 1 1 2 1 1 1 2 1 5 61 3 1 1 4 83 1 1 1 1 923 1 9 7 48 3 23 2 4 2 4 3 1 7 1 4 1 23 2 6 3 7 5 125 1 17 1 123 5 3 15 10 27 P ^Age001 TTTTTCATTT CTAACTTGCA TXXXXXX ^Adi002 TTTTTCATTT CTAATGCATG XGTAGXX ^Adi001 TTTTTCATTT CCXXTGCATX XGTXXXX ^Aru127 TTTTTCATCC ATAACTCATG XGTAGXX ^Aru001 TTTTTCACTC ATAACTTATG XGTAGXX ^Ama006 TTTTTAGTTT CTAACTTGTG XGTAGGX ^Smi165 TTTTCCATTT CTAACCTGTG XGCAAXX ^Aga001 TTTATCATTT CTAGCTTGTA TGTXXXX ^Ama018 TTATTCGTTT TTAACTCGTG XGTAGXX ^Aga002 TCTATCATTT CTAGCTTGTA TGTXXXX 767 1 1 2 23 3 1 1 2 6 1 1 6 1 7 1 1 3 4 6 8 87 3 39 2 6 366 10 27 P ^Age001 GATTATCAAT CGAATAAACA TTTACAX ^Adi002 GATTATCAAT CGAATAAACA TTTATTX ^Adi001 GATTATCAAT CGAATAAACA TTCGTTX ^Aru127 GATTATCAAC TATGCGXXXX XXTACTX ^Aru001 GATTATCAAT TATGCGXXXX XXTGCTX ^Ama006 GATTTCTGGT CGTGCGAAAX XXTACTX ^Smi165 GATCATCGGT CGAGCTAACA AXTACTX ^Aga001 GACTATTAAT CGAACAAACA TTTACTX ^Ama018 GATTACTAGT CATGCGXXXX XXTACTX ^Aga002 GGTTGTCAAT CGAACAAGCA TTTACTX 797 1 3 24 1 1 1 1 1 1 1 1 15 4 2 1 23 1 3 10 2 3 3 1 1 4 6 10 105 P ^Age001 GTCGGGATTG AATGCTCTTA GTTAGCCTGG CTTGTTACAC CAATTTATGG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 GTCGGGATTG AATGCTCTTA GTTGCTTCAC GCCTCCGXXX XXXXXXXXXX ATCGTGTCAG CGACACTATX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi001 GTCGGGATCA XXXXXXXXXX XXXACTTCAX XXXXXXXCAT XXXXXXXXXX AGTXXXXXXX XXXXXXXXXC AGTGGTTCGT XXXXXXXXXX XXXXXXXXXX XXXXX ^Aru127 GTCGGAGCTA AATGCTCCCG XXXAGCCCAG GCCAXXXCAC XXXXXXXXXX ATTGTGTCGA GCTATXXXXC AGTGGTCTTX ATATCXXXXX XXXXXXXXXX XXXXX ^Aru001 GTCGGGGCTG AATGCGTTTG GTAAGCCCAG GCCTTTGCAC CAATTCGCAX ATCGTGCXAG XXXXXCAXXX XXXXXXXXXX AXXXXATCAA TAGGGXXXXX XXXXX ^Ama006 GTCGCGACTA AATXXTCTTA GCGAGCTCAG GCCTCGGCAC CCXXXTACCG ATCGTTTCAG CGACTTTACC AGCXXXTTXX ATXXXATATC CTXXXTGGAG TTXXX ^Smi165 GTCAGGATTA AXXXXXXTXX XXXAGTCTAX GXXTXXXCAC XXACXXXXXX ATCGCGXXAA XXXXXXXXXC AATGAXTTXX XTACXXXXXX XXXXXXXXXX XXAXX ^Aga001 GTGGGGACTG AAAGTTTTTA GTCAGCTCAG GCGTTTGCCC CAXXXTGCAX ATCGTGACAG CGCTTCAACX XXXXXXXXXX AXXXXATCAA CGGGATGTGX XXXGX ^Ama018 GTCGCGACTA AXXXXXXTXX XXXAGCTCAX GXXTXXXCAC XXXXXXXXXX ATCGTTXCAG CAACTXXACC AGCXXXTTXX XTXXXXXXXX XXXXXXXXXX XXXXX ^Aga002 GCCGGGACTA AATXXTCTTA XXXAGCTCAG GCCTXXXCCC CCXXXTACCX ATCGTGTCAG CGATTTTACC CGTXXXTTXX ATXXXAACTG CTGCATXGXG CXXXX 996 3 1 36 4 1 3 1 3 2 7 94 11 4 1 3 1 2 1 1 45 66 1 2 3 5 1 1 9 3 5 1 1 1 1 1 1 4 1 1 9 1 11 6 7 1 2 1 1 1 7 6 2 75 1 2 1 81 4 2 40 1 1 1 1 1 2 24 1 100 1 3 1 14 12 88 1 1 1 249 4 1 14 10 165 183 3 1 21 1 33 1 5 2 1 45 53 1 40 5 3 45 2 188 1070 10 29 P ^Age001 GGCTCACATC TAGTTCATCA GCCTTTTAX ^Adi002 GGCTCACATC TAGTTCATGC AGTCCAGXX ^Adi001 GGCTCACATC TAGTTCGCCC AGTCCAGXX ^Aru127 GGCTCACATC TATCCTACCA GCTCCAGAX ^Aru001 GGCTCACATC CGGCCTACCA GCCCCAGAX ^Ama006 GGCTCACCAT TAGTTTACCA GCCCCAGAX ^Smi165 GGCTCTXATT TXGTXCATCA ATTTCGXXX ^Aga001 GGCCGAXATC TXGTXTACCA GCCCCAXXX ^Ama018 GGATCACAAT TAGTTTACCA GCCCCAGAX ^Aga002 GCCTGAXATC TXGTXTACCA GCTCCAXXX 1567 3 1 4 3 67 118 1 3 1 6 1 4 2 2 2 4 1 1 9 1 1 1 1 28 2 2 24 3 10 23 P ^Age001 ACAGCTGTGC TCGTTCTCCC GXX ^Adi002 ACAGCTGTGC TTCCCTCTGG XCC ^Adi001 ACAGCTGTGC CCCCCTCTGG XCC ^Aru127 ACAGCTGTAG TCGTCTCTTA XCC ^Aru001 ACAGCTGCGG TCGTCTCTGA XCC ^Ama006 ACAGCACTGC TCGTTTCTCG XCC ^Smi165 ACATTTGTGC TTGCTCTTTG XCC ^Aga001 ACGGTTCTGC TCGTTCCTGG XCT ^Ama018 ATAGCACTGC TCGTTTCTCG XCC ^Aga002 ACGGTTCTGC TCGTTCCTGG XCT 1109 2 2 29 1 1 3 3 1 4 1 1 7 1 1 1 4 49 1 1 14 4 1 10 27 P ^Age001 TGTAACAAAC TCAGTATATC TACXXXX ^Adi002 TGTAACAAAC ATGTGTGCCG GTXTCTA ^Adi001 TGTAACXXXX ATGTGTAXXX XXXTXXX ^Aru127 TGTAATAAAG TCGTGCGACG GTXTCTC ^Aru001 TGTAGTXXXX TCGTGCAXXX XXXTXXX ^Ama006 TGTGACAAAC TAGTGCGACG GTXTCGC ^Smi165 TGCAACAAAC TTATACGATG GCXTCGC ^Aga001 TATAACAATG TCGTGCGACG GTXTCGC ^Ama018 TGTGACAXXC TAGTGCGXCG XXXTXXX ^Aga002 TATAACXXXX TCGTGCAXXX XXXTXXX 691 2 12 1 1 3 29 16 1 1 3 1 3 120 1 1 1 1 1 29 18 2 127 51 16 1 5 10 28 P ^Age001 GCTCGCTCAA CCTGCGTGTC TTCCGTTX ^Adi002 GCTCGCTCAA CCTGCGCAAT CCTTTCAG ^Adi001 GCTCGCTCAA CCTGCATGAT CCTTTCAG ^Aru127 GCTCGCTCAT TTCTTATATC TCTTCACX ^Aru001 GCTCGCTCGA CCTGTATGTT CCTTTCAG ^Ama006 GCTCGCCTAA CCTGCATGTC CCTTGCAX ^Smi165 GCTCCTTCAA CCCACATGTC CTTTGCGX ^Aga001 GCTTGTTCAA CCTGCGTGTC TTCTGCAG ^Ama018 GCCCGCTTAA TATGCGTGTC TTCTGCAX ^Aga002 GTTTGATCAA CCTGCGTGTC TTCTGCAG 1230 1 2 9 5 1 3 2 1 44 1 1 10 2 2 1 2 1 1 1 1 1 1 6 1 1 1 3 10 58 P ^Age001 AACGACGCGT ATTGCACTTG TACGGCGCCT CACGGCAGAA GATCAGATAA GCXXXXXX ^Adi002 AACGACGCGT ATTGCACTTG TACGGCGCCT CGTAATGATC AGCACCCACT TXCAAAGX ^Adi001 AACGACGCGT ATTGCACTTG TACGGCGTTC TACAATGATC AGCACCCACC CXCAAAGX ^Aru127 AACGACGCGT ATTGCACCCC CGTAATCCCT TACGGCAGTC AGCACCTCGC CXCAAAXX ^Aru001 AACGACGCGT ATCATGTTTC CGTAATACTC TACGGCAGAC AGCACTCCGC CXCAGGGX ^Ama006 AACGACGAAC GXTATGTTTG TACGATACCT CACGATGTAA GACACTCACC CXCAAGXX ^Smi165 AACGATACGC GTTGCGTTCG TATAGTACCC AACGGCGAAA GGTAGTCATC CXCCAGGX ^Aga001 AACATCGCGT ATTGTATTCG TGCAATACCT CATGGTGGTC AGCACCAACC CXCAAAGX ^Ama018 AATGACTCAT GXTATGTTTG CGCGATACCT CACGGTGGAA AGCACTCACA CXCAAGXX ^Aga002 ACCGTCGCGT ATTGCACTCG TGCAACGCCT CATGGTGGTC AGCACCCACC CXCAAAGX 2704 1 4 5 3 63 1 26 12 16 6 3 3 1 2 1 6 1 1 12 1 3 3 1 2 3 1 8 8 1 1 11 1 12 1 1 3 1 2 1 9 3 4 145 2 2 1 3 1 1 1 93 32 2 1 1 3 249 10 66 P ^Age001 TATACTGTAG CCAGATGTCT TGGACTACGT AGGCGGGGGT GTAGACCCAA CAGTACCTAG TXXXXX ^Adi002 TATACTGTAG CCAGATGTCT TGGACTACGT AACTAAAXXX XXXXXXXXXX XXXXXXXXXX XGACXX ^Adi001 TATACTGTAG CCAGATGTCT TGGACTCTAC GGGCAAAGGT GTAGACCCAA CAGTATTCGA CGAXXX ^Aru127 TATACTGTAG CCAGAAAATC CACGAXACAC GGGCGAAGGT GTAGACCCAT TGTCXCCCGA CGTXXX ^Aru001 TATACTGTAG CCATCTGTCC CACGGTACGC GGGCGAAGGT GTAGACCCGA CGTCACCCGA CGAXXX ^Ama006 TATACTGTAG CTTGATGTTT TACGCXACGT GGGCGAAGGT GTAGACTTAA TAGTXCGCGA CGAXXX ^Smi165 TATACTGAGA TCGGATACTT CGCGATATGT GGGAGAAGGT GTGAGTCCAA GATCCCCTAA CGAXTX ^Aga001 TATAACATAG TCAGATATCT TGGGATACGT AGGCGAAGGT TCAGAGCCAA CAGCACCCGA CGAXXX ^Ama018 TAAXCTXTGX CCAGXTGTCC CAGGGXACGX XGXXGGAGCX GTAAXCCTAA CGGCXCCCXA AGAXXX ^Aga002 TTTACCATAG TCAGATATCT TGGGCTACGT AGGCGAAGGT GCAGATCCAA CAGCACCCAA CGAXXX 1206 1 2 174 3 4 1 46 1 8 1 5 1 2 1 9 1 2 1 1 1 1 1 1 1 8 2 1 1 2 1 3 2 1 1 1 8 979 4 48 4 3 17 1 1 1 2 1 1 2 1 1 2 2 1 4 1 1 1 4 1 26 1 1032 6 294 10 43 P ^Age001 AATCCGCTAG CTTGCGGCTT ATTGACATAT GATXXXXXXX XXX ^Adi002 AATCCGCTAG CTTGCGGCCG CCCAGAGCCA TTXTCGCGCT XXX ^Adi001 AATCCGCTAG CTTGCTTTTT CCCAGAGCCA TCXTCGCGCT XXX ^Aru127 AATCCGCTAG CCCCTGGCTT ATTGGAGCCA CAXTCGXXXX XXX ^Aru001 AATCCGCTAG GTTCTGGGTT ATTGAAGCCA CAXTCGXXXX XXX ^Ama006 AATCCGCTGA CTAGTGGTTT ATTAAAGCCG CAXTCGXXXX AAX ^Smi165 AATCTTTXAG CTTGCGXTTG ATCGACGCCA CAXTCTCGXX AGX ^Aga001 AAGACGTTAA CTTGTGGCTT AGTGAAGCTA CAXTCGCXGX XXX ^Ama018 AATCCGCTGA CTAGTGGTTT ATTAAAGCCG CAXTCGXXXX AAX ^Aga002 AGTACCTTAA CTTGTGGCTT AGTGAAACTA CAXTAGXXXX XXX 2865 3 1 6 45 1 1 2 8 2 5 1 1 7 3 8 1 1 7 1 18 1 7 1 1 1 1 62 1 1 1 1 4 145 1 2 2 1 1 5 134 13 439 10 35 P ^Age001 AGCCGCCCTC ACATCCGTAX XXXXXXXXXX XXXXX ^Adi002 AGCCGCCCTT GTGCTTTATT TTCCGTAGAT CTXXX ^Adi001 AGCCGCCCTC ATGCTTTATT TTCCGTAGAT AGGCX ^Aru127 AGCCGCCGCC GCATTTTATT TTCCGTTTTA AGGGT ^Aru001 AGCCGCTGCC GCATTTTATT TTCCGCTTTG AGXXX ^Ama006 AGCCGCCCTC GTGCTTTATT TTCCCTAGTG AGGCT ^Smi165 AGTXXXXCXC XCXXTGXXXT CXXXXXXXXX XXXXX ^Aga001 AACCGCCGTC GCATTTTATT TTCCGTATTT AGXXX ^Ama018 AGCCGCCCTC GTGCTTTATT TTCCGTAGTG AGGCT ^Aga002 AACCAXCGTC XCACTTTGXT TTTXXTXXXX AXXXX 298 1 13 15 9 79 1 1 1 1 1 1 1 1 2 1 1 3 14 60 3 45 5 222 2 1 1 1 2 1 1 1 38 1 27 10 16 P ^Age001 TGCGAAACAC GGATGX ^Adi002 TGCGAAACAC AAGCTA ^Adi001 TGCGAAACAG GAGCTA ^Aru127 TGCGAAGGTC GGGCTA ^Aru001 TGCGAAAGTC GGGCTA ^Ama006 TGCGATACAC GGGCTA ^Smi165 TGAAGAACAC GGACCA ^Aga001 TCCGAAACTC GGGCTA ^Ama018 TGCGGTACAC GGGCTA ^Aga002 TGCAAAACTC GGGCTA 933 2 27 1 1 4 1 2 1 4 3 4 1 10 2 3 10 37 P ^Age001 AGTGTGAAGA TAAATAXXXX XXXXXXXXXX XXXXXXX ^Adi002 AGTGTGAAGT CGGGATATGT TTAGTGGATA GGAGGCX ^Adi001 AGTGTGAAAA CGGGATATGT TTAGTGGATA GGAGCGX ^Aru127 AGTGTATGGA TAGGAGATGT TTAGTGGATA ATCCGCX ^Aru001 AGTGTGTGGA TAGGAGATGT TTAGTGGATA ATCCGCX ^Ama006 AGTGCGAGGA TGGGATATGT TTAGTACCAG GGACGCX ^Smi165 AGTATGAGGA TGAGGTATGT TCTAXGGAAT GGGCGCX ^Aga001 AGCGTGAGGA TAAGAAAATX XTXXTGGXAA GTGCGXX ^Ama018 ACTGCGAGGA TGGGATATGT TTAGTGCAAG GGACGCX ^Aga002 AGCGTGAGGA TAAGAAATTT CTAATGGAAA GTACGCX 815 1 2 22 6 2 3 1 4 1 5 1 1 16 1 1 317 1 2 45 2 9 2 1 6 1 1 1 1 1 2 1 1 1 4 3 144 10 41 P ^Age001 CAAATTCCGT CCATTTTCCG TCCCXXXXXX XXXXXXXXXX X ^Adi002 CAAATTCCGT CCATTTTCCG ATTTTTTXXX XXXXXXXXXX X ^Adi001 CAAATTCCGT CCATTTGTTX ATTXTTTTAA GGACTATTXX X ^Aru127 CAAATTCCGT CTTCCXTCTX TTTXTTCTTX XXXXXXXXCT X ^Aru001 CAAATTCCGC TCTCCXTCTX TTTXTTCTTX XXXXXXXXCC X ^Ama006 CAAATCTTAT TCATCTTCTX TTAXTTCTTA GGACAGCCXX X ^Smi165 CAAAGTCTAT CCATCTTATX TTTXTCCTTA GGGXTGCXXX X ^Aga001 CACGTTCCGT CCATCTTTTX TTTXTTCTTA AAACTACCXX X ^Ama018 CAAATTTCAT TCATCTTCTX TTAXTTCTTA GGACAGCCXX X ^Aga002 CGAGTTCCGT CCACCTTCTX TTTXTTCTTA GAACTACCXX X 2976 1 5 3 57 1 8 1 2 2 1 2 67 1 1 4 5 1 27 408 6 21 1 5 97 4 1 10 1 378 1 1 10 53 3 1 2 1 372 1 765 10 35 P ^Age001 GAGTTTCTTA TGGTTCAACG GCCAAGTTTG CAGXX ^Adi002 GAGTTTCTTA TGGTTGTTTA CTGCTTXXXX XXXGX ^Adi001 GAGTTTCTTA TGGAGCAACA CTGCGCXXXX XXXXX ^Aru127 GAGTTTCTTA CATTGCAATG CTGCGCXXXX XXXXX ^Aru001 GAGTTTCTTA TATTGCAATG CTGCGCXXXX XXXXX ^Ama006 GAGTTTCTTG TGTTGCAACG CTGCGCTTTG ACCXX ^Smi165 GAGTCCTAXA TGGTGCTGTG GTGCACTXXX XXXXX ^Aga001 GAACTTTCTA TGTTGCAACG CCGTGCTTTA CACXX ^Ama018 GAGTTTCTTG TGTTGCAACG CTGCGCTTCG CCCXX ^Aga002 GGAGTCTCTA TGTTGCAACG CCGTGCXXXX XXXXX 1613 17 26 1 31 2 8 1 3 4 1 4 2 4 2 44 8 5 1 3 1 1 8 1 2 1 12 378 2 1 1 1 4 6 201 10 16 P ^Age001 CGCACAGAGG CTGCCG ^Adi002 CGCACAGAGG CTATTT ^Adi001 CGCACAGAGG CTGCTT ^Aru127 CGCACAGAGA GGGCCT ^Aru001 CGCACAGAAA GGGCCT ^Ama006 CGCACGAGGG GGGCCT ^Smi165 CGCGTAATGG CGGTCT ^Aga001 CCAATAGAGG GTGCCT ^Ama018 CGCACGAGGG GGGCCT ^Aga002 CGAATAGAGG GTGCCT 966 2 4 42 1 4 1 1 2 3 1 1 2 2 2 1 10 34 P ^Age001 GTACTAGCGC TTGTACTGCT CTTTGTXXXX XXXX ^Adi002 GTACTAGCGC TTGTTTCCAA TCCATGTTTX XXXX ^Adi001 GTACTAGCGC TCACACTGCA TCCATCTGCT CTTX ^Aru127 GTACTAGGAT CTGTACTGCT CTTAATXXXX XXXX ^Aru001 GTACTAACAT CTGTACTGAT CTTAATXXXX XXXX ^Ama006 GTACTCGCGC CTGCACTCCT CCCAATXXXX XXXX ^Smi165 GTACCAGCGT TTACACGCCT TTCACTTTCT CAXX ^Aga001 GTCTTAGCGC CTGCATTCCT CTCAATTTGT ATXX ^Ama018 GTACTCGCGC CTGCACTCCT CCCAATXXXX XXXX ^Aga002 GAATTAGCGC CTGCATTCCT CCCAATXXXX XXXX 806 1 3 1 21 4 1 1 5 1 1 7 1 1 6 1 1 2 1 2 2 1 2 5 1 1 1 1 1 1 1 1 9 216 10 65 P ^Age001 CGCGCTGCTC TAGTCCTGCG CAACTCTTAG GGGGCTGTGG GGCGGAATAT CGCGXXXXXX XXXXX ^Adi002 CGCGCTGCTC TAGTCCTGCG CAACTCTTAG GGTCTCAGAC ACTACGGAGC GCGXCAXXXX XXXXX ^Adi001 CGCGCTGCTC TAGTCCTGCG CAACTCTTAG GCGGCTGTAC ACTACGGAGC GAAXCAAXXX XXXXX ^Aru127 CGCGCTGCTC TAGTCCTGCG CAACTTCGGC CGGGCTGCGG GGCGGGGAGC TGATCXXCCC TAXXX ^Aru001 CGCGCTGCTC TAGTCCTCTC TGGXXCTTAC CGGGTCCTGG GGCGCGGAGC GGAGCXXCCC TTXXX ^Ama006 CGCGCTGCTC TAGCTACGCG CAGCTCTTGG CGGGCTGTGG GGCAGGGAGC TGATCXXCCT CAAXX ^Smi165 CGCGCTGCCT CGATCCCGCG CGGCTCTAGG CGGGCCGTGG GCTGCAGAGC TGATCXXCTC TAXXX ^Aga001 CGCGTCCTTC TAATCTTGCG TGGCTCTTGG CGGGTCGTGG GGCGCGGAGC TGATCXXCCC TAXXX ^Ama018 CGCACTGCTC TAGTTCCGCG CAGCTCTTGG CGGGCTGTGG GGCAGGGAGC TGATCXXCCC CAXXX ^Aga002 CAXGCCAXTT GXGTCCTGTX XXXCCCXTXG CGGXXXGTGC CGXGXGAACX XGAXCXXCCC TAXCX 923 112 132 9 1 2 1 3 35 1 2 4 1 8 3 1 2 8 1 3 1 2 1 2 1 1 2 1 2 1 4 2 23 1 2 7 1 1 13 1 1 1 1 1 1 1 1 11 1 6 1 1 1 4 3 4 468 92 1 1 1 1 3 143 417 10 33 P ^Age001 GATCTGGTTC TACACGAAAC TGTTATTCCT TTX ^Adi002 GATCTGGTTC TACATACGGA AAAGGCATTC CGX ^Adi001 GATCTGGTTC TACACGAAAC TGTTATTTTC CGX ^Aru127 GATCTGGTTC TGTGCACGGA AAAGTGGCCC CCX ^Aru001 GATCTGGTTC GGTGCACGGA AAAGTGGCCC CCX ^Ama006 GATCTGGTTT TGTGCACGGA AAAGTGGCCC CCX ^Smi165 GATCTAAAAC TATGCGAGGA CTCAACGCTC CCX ^Aga001 GATGXGACXC TATCCGCAGG TACCCAACCC CCG ^Ama018 GACCTGGTTC TGTGCACGGA AAAGTGGCCT CCX ^Aga002 GTTCTGGTTC TGTGCGAAAC TGTTATTCCC CCX 731 1 2 25 8 16 2 5 1 2 1 2 1 1 1 2 3 4 4 3 1 2 3 4 1 1 1 3 1 1 6 1 603 Per-locus sequences in data and 'species&tree' tag: C.File | Data | Status | Population -------+------+--------------------------------------+----------- 3 | 2 | [OK] | Adig 2 | 2 | [OK] | Agra 1 | 1 | [OK] | Agre 2 | 2 | [OK] | Amad 2 | 2 | [OK] | Arub 1 | 1 | [OK] | Smic Initial MSC density and log-likelihood of observing data: log-PG0 = 3977.544709 log-L0 = -474059.219649 Distributing workload to threads: Thread 0 : loci [ 1 - 26), Patterns/Seqs/Load : 1063 / 250 / 10630 Thread 1 : loci [26 - 51), Patterns/Seqs/Load : 1034 / 250 / 10340 Thread 2 : loci [51 - 76), Patterns/Seqs/Load : 1011 / 250 / 10110 Thread 3 : loci [76 - 101), Patterns/Seqs/Load : 1007 / 250 / 10070 0:00 taken to read and process data.. Restarting timer... -*- Terms index -*- Prgs: progress of MCMC run (negative progress means burnin) Gage: gene-tree age proposal Gspr: gene-tree SPR proposal th1: species tree theta proposal (tips) (sliding window) th2: species tree theta proposal (inner) (sliding window) thg: species tree theta proposal (inner) (gibbs sampler) tau: species tree tau proposal mix: mixing proposal phis: MSCi phi parameter proposal (sliding window) phig: MSCi phi parameter proposal (gibbs sampler) theta1: mean theta of node 1 theta2: mean theta of node 2 theta3: mean theta of node 4 tau1: mean tau of node 6 tau2: mean tau of node 7 tau3: mean tau of node 8 phi1: mean of phi_z : e -> z log-PG: log-probability of gene trees (MSCi) log-L: mean log-L of observing data | Acceptance proportions | Prgs | Gage Gspr th1 th2 thg tau mix phis phig | theta1 theta2 theta3 tau1 tau2 tau3 phi1 log-PG log-L ------------------------------------------------------------------------------------------------------------------------------------ Gage Gspr th1 th2 tau mix phis Current Pjump: 0.32210 0.41077 0.66919 0.61344 0.12646 0.00616 0.99418 Current finetune: 5.00000 0.00100 0.00050 0.00200 0.00100 0.30000 0.00100 New finetune: 5.43702 0.00148 0.00172 0.00565 0.00040 0.00570 0.21467 => 'finetune = 1 Gage:5.437019 Gspr:0.001477 th1:0.001715 th2:0.005650 tau:0.000395 mix:0.005697 phis:0.214669' -5% 0.32 0.34 0.30 0.39 0.94 0.20 0.51 0.08 1.00 0.0061 0.0054 0.0047 0.0128 0.0049 0.0048 0.7186 3495.93925 -451077.39371 1:33 Gage Gspr th1 th2 tau mix phis Current Pjump: 0.32165 0.33510 0.29918 0.38715 0.20223 0.51328 0.08053 Current finetune: 5.43702 0.00148 0.00172 0.00565 0.00040 0.00570 0.21467 New finetune: 5.90246 0.00168 0.00171 0.00772 0.00025 0.01166 0.05358 => 'finetune = 1 Gage:5.902462 Gspr:0.001685 th1:0.001710 th2:0.007719 tau:0.000255 mix:0.011658 phis:0.053581' Gage Gspr th1 th2 tau mix phis Current Pjump: 0.32286 0.31174 0.26369 0.32104 0.31699 0.34000 0.37608 Current finetune: 5.90246 0.00168 0.00171 0.00772 0.00025 0.01166 0.05358 New finetune: 6.43645 0.00176 0.00148 0.00836 0.00027 0.01353 0.07052 => 'finetune = 1 Gage:6.436446 Gspr:0.001762 th1:0.001475 th2:0.008361 tau:0.000272 mix:0.013531 phis:0.070522' 0% 0.32 0.30 0.34 0.36 0.93 0.30 0.30 0.36 1.00 0.0060 0.0054 0.0043 0.0126 0.0049 0.0048 0.6638 3483.53752 -451074.91541 3:05 Gage Gspr th1 th2 tau mix phis Current Pjump: 0.32315 0.30354 0.33632 0.35849 0.29838 0.30304 0.35553 Current finetune: 6.43645 0.00176 0.00148 0.00836 0.00027 0.01353 0.07052 New finetune: 7.02621 0.00179 0.00169 0.01036 0.00027 0.01369 0.08648 => 'finetune = 1 Gage:7.026211 Gspr:0.001787 th1:0.001690 th2:0.010359 tau:0.000270 mix:0.013692 phis:0.086478' 5% 0.32 0.30 0.29 0.22 0.93 0.30 0.30 0.46 1.00 0.0061 0.0054 0.0052 0.0129 0.0049 0.0048 0.6155 3478.90683 -451078.48487 4:38 10% 0.32 0.30 0.30 0.24 0.93 0.30 0.30 0.44 1.00 0.0060 0.0054 0.0050 0.0130 0.0049 0.0048 0.6773 3490.21027 -451079.30802 6:11 15% 0.32 0.30 0.31 0.24 0.93 0.30 0.30 0.43 1.00 0.0060 0.0054 0.0050 0.0130 0.0049 0.0048 0.6627 3461.78647 -451079.37605 7:44 20% 0.32 0.30 0.31 0.25 0.93 0.30 0.30 0.42 1.00 0.0060 0.0054 0.0049 0.0130 0.0049 0.0048 0.6783 3525.40702 -451078.93763 9:17 25% 0.32 0.30 0.31 0.25 0.93 0.30 0.30 0.42 1.00 0.0060 0.0054 0.0048 0.0130 0.0049 0.0048 0.6882 3513.66774 -451079.14222 10:49 30% 0.32 0.30 0.32 0.26 0.93 0.30 0.31 0.41 1.00 0.0060 0.0054 0.0049 0.0130 0.0049 0.0048 0.7008 3524.37237 -451079.29153 12:22 35% 0.32 0.30 0.32 0.26 0.93 0.30 0.31 0.41 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7024 3546.28025 -451078.84802 13:55 40% 0.32 0.30 0.32 0.26 0.93 0.30 0.31 0.41 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7064 3519.00525 -451078.61262 15:28 45% 0.32 0.30 0.32 0.26 0.93 0.30 0.30 0.41 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7083 3530.47601 -451078.44390 17:00 50% 0.32 0.30 0.32 0.26 0.93 0.30 0.30 0.41 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7082 3520.59248 -451078.30874 18:33 55% 0.32 0.30 0.32 0.26 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7117 3521.83246 -451078.43689 20:06 60% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7114 3535.56803 -451078.62761 21:39 65% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0047 0.0129 0.0049 0.0048 0.7110 3512.17479 -451078.59613 23:11 70% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0047 0.0129 0.0049 0.0048 0.7123 3514.93797 -451078.53296 24:44 75% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0047 0.0130 0.0049 0.0048 0.7099 3495.25222 -451078.69395 26:17 80% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0048 0.0130 0.0049 0.0048 0.7006 3484.34576 -451078.72453 27:50 85% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0048 0.0130 0.0049 0.0048 0.7005 3548.81521 -451078.64646 29:22 90% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.40 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7010 3525.24780 -451078.55554 30:55 95% 0.32 0.30 0.32 0.27 0.93 0.30 0.30 0.39 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7038 3516.26405 -451078.52789 32:28 100% 0.32 0.30 0.33 0.27 0.94 0.30 0.30 0.39 1.00 0.0060 0.0054 0.0048 0.0129 0.0049 0.0048 0.7057 3531.22064 -451078.50442 34:01 34:01 spent in MCMC Node-Index Node-Type Node-Label --------------------------------- 1 Tip Adig 2 Tip Agra 3 Tip Agre 4 Tip Amad 5 Tip Arub 6 Tip Smic 7 Root a 8 Inner b 9 Inner c 10 Inner d 11 Inner y 12 Inner e 13 Hybrid z (parental node index: 12) 14 Hybrid z (parental node index: 11) param mean median S.D min max 2.5% 97.5% 2.5%HPD 97.5%HPD ESS* Eff* rho1 --------------------------------------------------------------------------------------------------------------------------------------- theta:1 0.006046 0.005992 0.000713 0.003682 0.010517 0.004805 0.007586 0.004708 0.007454 91709.650515 0.917097 0.011879 theta:2 0.005427 0.005373 0.000696 0.003257 0.011574 0.004222 0.006948 0.004136 0.006826 81130.730751 0.811307 0.024243 theta:4 0.004796 0.004374 0.001802 0.002407 0.057922 0.003331 0.009903 0.002971 0.007911 368.913065 0.003689 0.647308 theta:5 0.006775 0.006599 0.001323 0.003823 0.039991 0.005017 0.009437 0.004803 0.008942 2619.808775 0.026198 0.359550 theta:7 0.034701 0.034601 0.002837 0.024636 0.051332 0.029443 0.040541 0.029184 0.040249 3212.801087 0.032128 0.220521 theta:8 0.022607 0.022554 0.001588 0.016439 0.030289 0.019650 0.025872 0.019580 0.025795 17414.283618 0.174143 0.186040 theta:9 0.011312 0.010355 0.005697 0.000444 0.052990 0.003113 0.024960 0.002043 0.022583 63263.423686 0.632634 0.105424 theta:10 0.010334 0.009946 0.004019 0.000643 0.039277 0.003676 0.019284 0.003099 0.018316 4247.798937 0.042478 0.402721 theta:11 0.007608 0.006940 0.003135 0.000344 0.038886 0.003500 0.015557 0.002807 0.013932 1227.660414 0.012277 0.456575 theta:12 0.009769 0.009076 0.004438 0.000278 0.047740 0.003167 0.020410 0.002233 0.018468 32069.801571 0.320698 0.239177 theta:13 0.006919 0.005463 0.004992 0.000168 0.048492 0.001414 0.019961 0.000720 0.017097 4135.111121 0.041351 0.353669 theta:14 0.009404 0.008289 0.005775 0.000052 0.052938 0.001719 0.023506 0.000865 0.020724 2150.289066 0.021503 0.094960 tau:7 0.012937 0.012927 0.000740 0.010421 0.015464 0.011532 0.014361 0.011532 0.014361 657.256612 0.006573 0.948045 tau:8 0.004929 0.004927 0.000169 0.004273 0.005760 0.004605 0.005267 0.004597 0.005259 5056.179222 0.050562 0.836954 tau:9 0.004813 0.004813 0.000159 0.004094 0.005520 0.004505 0.005128 0.004502 0.005124 6868.096254 0.068681 0.773535 tau:10 0.004208 0.004226 0.000250 0.002959 0.005030 0.003659 0.004645 0.003704 0.004679 851.046036 0.008510 0.723260 tau:11 0.002800 0.002836 0.000408 0.000252 0.004076 0.001867 0.003465 0.002052 0.003545 1096.984698 0.010970 0.883066 tau:12 0.003533 0.003550 0.000287 0.000719 0.004522 0.002957 0.004025 0.002998 0.004055 969.361546 0.009694 0.648226 tau:13 0.002276 0.002435 0.000644 0.000008 0.003721 0.000642 0.003138 0.000709 0.003186 409.198900 0.004092 0.960513 phi:13<-12 0.705551 0.750541 0.191548 0.000002 0.999934 0.106836 0.952049 0.304632 0.999934 227.342841 0.002273 0.919602 lnL -451078.569687 -451078.259000 24.268703 -451189.626000 -450974.965000 -451126.941000 -451031.786000 -451125.916000 -451030.930000 7341.583387 0.073416 0.252027 List of nodes, taus and thetas: Node (+1) Tau Theta Label 0 0.000000 0.006046 Adig [ Adig ] 1 0.000000 0.005427 Agra [ Agra ] 2 0.000000 -1.000000 Agre [ Agre ] 3 0.000000 0.004796 Amad [ Amad ] 4 0.000000 0.006775 Arub [ Arub ] 5 0.000000 -1.000000 Smic [ Smic ] 6 0.012937 0.034701 a [ Adig Agra Agre Amad Arub Smic ] 7 0.004929 0.022607 b [ Adig Agra Agre Amad Arub ] 8 0.004813 0.011312 c [ Adig Agra Amad Arub ] 9 0.004208 0.010334 d [ Agra Amad Arub ] 10 0.002800 0.007608 y [ Amad Arub ] 11 0.003533 0.009769 e [ Agra Amad ] 12 0.002276 0.006919 z [ Amad ] 13 0.002276 0.009404 z [ Amad ] Species tree network: (Smic, (Agre,(Adig,((z[&phi=0.294449,tau-parent=yes],Arub)y,(Agra,(Amad)z[&phi=0.705551,tau-parent=yes])e)d)c)b)a; Species tree network with attributes (thetas and tau 95% HPD), and branch lengths (tau difference): (Smic: 0.012937, (Agre: 0.004929, (Adig: 0.004813, ((z: 0.000525, Arub: 0.002800)y[&height_95%_HPD={0.00205200, 0.00354500}, theta=0.0076080]: 0.001407, (Agra: 0.003533, (Amad: 0.002276)z[&height_95%_HPD={0.00070900, 0.00318600}, theta=0.0069192]: 0.001257)e[&height_95%_HPD={0.00299800, 0.00405500}, theta=0.0097689]: 0.000675)d[&height_95%_HPD={0.00370400, 0.00467900}, theta=0.0103340]: 0.000605)c[&height_95%_HPD={0.00450200, 0.00512400}, theta=0.0113123]: 0.000116)b[&height_95%_HPD={0.00459700, 0.00525900}, theta=0.0226065]: 0.008008)a[&height_95%_HPD={0.01153200, 0.01436100}, theta=0.0347010]; Species tree network with taus and thetas: (Smic , (Agre , (Adig #0.006046, ((z[&phi=0.294449,tau-parent=yes]:0.002276 #0.009404, Arub #0.006775)y:0.002800 #0.007608, (Agra #0.005427, (Amad #0.004796)z[&phi=0.705551,tau-parent=yes]:0.002276 #0.006919)e:0.003533 #0.009769)d:0.004208 #0.010334)c:0.004813 #0.011312)b:0.004929 #0.022607)a:0.012937 #0.034701; Summarizing parameter estimates using file baobab-msci.conditional_a1b1.txt ... param mean S.D 2.5% 97.5% 2.5%HPD 97.5%HPD Effu Effy c ---------------------------------------------------------------------------------------------------- theta:1 0.006038 0.000687 0.004837 0.007521 0.004754 0.007411 3.721156 0.862468 9.151633 theta:2 0.005413 0.000669 0.004249 0.006860 0.004131 0.006715 2.592236 0.819976 6.016131 theta:4 0.004771 0.001707 0.003358 0.009691 0.002952 0.007742 0.003508 0.003505 1.282471 theta:5 0.006752 0.001277 0.005051 0.009301 0.004796 0.008791 0.025967 0.025644 1.938617 theta:7 0.034696 0.002804 0.029502 0.040473 0.029143 0.040092 0.033224 0.032448 3.576019 theta:8 0.022604 0.001579 0.019655 0.025843 0.019554 0.025717 0.172468 0.155356 2.767326 theta:9 0.011051 0.005409 0.003154 0.023879 0.002010 0.021558 0.789998 0.647090 1.388027 theta:10 0.010302 0.003967 0.003677 0.019063 0.003022 0.018069 0.040915 0.040676 1.167315 theta:11 0.007530 0.003029 0.003527 0.015157 0.002819 0.013586 0.011881 0.011849 1.296254 theta:12 0.009600 0.004234 0.003198 0.019543 0.002295 0.017872 0.335981 0.308929 1.352500 theta:13 0.006488 0.004404 0.001434 0.017534 0.000711 0.014979 0.036359 0.035837 1.668170 theta:14 0.008859 0.005126 0.002129 0.021449 0.000984 0.018307 0.020153 0.019832 5.099156 phi:13<-12 0.705658 0.191303 0.109500 0.951500 0.306500 0.999500 0.002275 0.002274 1.036804