Analysis started at: Sat Mar 1 13:59:06 2025 Using BPP version: 4.8.2 pver sha1: 1a053a3b61831dc4fb680235a5f6e63e8158ea54 Command: bpp4.8.2 --cfile baobab.A00.mscm.ctl Seed: 16560695 (randomly generated) Initial species tree: (((((Amad, Arub), Agra), Adig), Agre), Smic); Locus | Model | Sequences | Length | Ambiguous sites | Compressed | Base freqs -------+-------+-----------+--------+-----------------+------------+------------ 1 | JC69 | 10 | 960 | 12 | 19 | Fixed 2 | JC69 | 10 | 933 | 72 | 18 | Fixed 3 | JC69 | 10 | 5945 | 4532 | 103 | Fixed 4 | JC69 | 10 | 4753 | 2331 | 56 | Fixed 5 | JC69 | 10 | 1623 | 312 | 30 | Fixed 6 | JC69 | 10 | 1158 | 0 | 15 | Fixed 7 | JC69 | 10 | 4890 | 437 | 63 | Fixed 8 | JC69 | 10 | 4217 | 3284 | 83 | Fixed 9 | JC69 | 10 | 1800 | 0 | 23 | Fixed 10 | JC69 | 10 | 1020 | 132 | 13 | Fixed 11 | JC69 | 10 | 807 | 195 | 28 | Fixed 12 | JC69 | 10 | 1104 | 114 | 23 | Fixed 13 | JC69 | 10 | 1805 | 783 | 101 | Fixed 14 | JC69 | 10 | 10366 | 5339 | 153 | Fixed 15 | JC69 | 10 | 1674 | 62 | 37 | Fixed 16 | JC69 | 10 | 1566 | 108 | 33 | Fixed 17 | JC69 | 10 | 870 | 0 | 9 | Fixed 18 | JC69 | 10 | 2918 | 1213 | 86 | Fixed 19 | JC69 | 10 | 2109 | 18 | 32 | Fixed 20 | JC69 | 10 | 2271 | 36 | 37 | Fixed 21 | JC69 | 10 | 1728 | 543 | 36 | Fixed 22 | JC69 | 10 | 3429 | 1507 | 67 | Fixed 23 | JC69 | 10 | 1411 | 433 | 33 | Fixed 24 | JC69 | 10 | 1371 | 0 | 17 | Fixed 25 | JC69 | 10 | 4002 | 1464 | 77 | Fixed 26 | JC69 | 10 | 1620 | 699 | 32 | Fixed 27 | JC69 | 10 | 2016 | 33 | 21 | Fixed 28 | JC69 | 10 | 3387 | 1458 | 75 | Fixed 29 | JC69 | 10 | 1140 | 0 | 23 | Fixed 30 | JC69 | 10 | 2112 | 6 | 30 | Fixed 31 | JC69 | 10 | 810 | 3 | 13 | Fixed 32 | JC69 | 10 | 4229 | 1961 | 36 | Fixed 33 | JC69 | 10 | 828 | 3 | 18 | Fixed 34 | JC69 | 10 | 7527 | 2958 | 71 | Fixed 35 | JC69 | 10 | 1137 | 191 | 49 | Fixed 36 | JC69 | 10 | 1539 | 102 | 39 | Fixed 37 | JC69 | 10 | 6710 | 1122 | 128 | Fixed 38 | JC69 | 10 | 1068 | 189 | 27 | Fixed 39 | JC69 | 10 | 1740 | 6 | 19 | Fixed 40 | JC69 | 10 | 873 | 0 | 16 | Fixed 41 | JC69 | 10 | 2476 | 802 | 54 | Fixed 42 | JC69 | 10 | 1516 | 1054 | 39 | Fixed 43 | JC69 | 10 | 1098 | 12 | 23 | Fixed 44 | JC69 | 10 | 4221 | 744 | 29 | Fixed 45 | JC69 | 10 | 1684 | 739 | 37 | Fixed 46 | JC69 | 10 | 6431 | 3832 | 49 | Fixed 47 | JC69 | 10 | 2302 | 998 | 45 | Fixed 48 | JC69 | 10 | 1395 | 342 | 12 | Fixed 49 | JC69 | 10 | 1500 | 93 | 28 | Fixed 50 | JC69 | 10 | 933 | 3 | 15 | Fixed 51 | JC69 | 10 | 1935 | 831 | 28 | Fixed 52 | JC69 | 10 | 7083 | 108 | 49 | Fixed 53 | JC69 | 10 | 1647 | 126 | 27 | Fixed 54 | JC69 | 10 | 2029 | 378 | 58 | Fixed 55 | JC69 | 10 | 1875 | 438 | 27 | Fixed 56 | JC69 | 10 | 1563 | 15 | 34 | Fixed 57 | JC69 | 10 | 1044 | 213 | 25 | Fixed 58 | JC69 | 10 | 11353 | 6452 | 68 | Fixed 59 | JC69 | 10 | 2562 | 3 | 28 | Fixed 60 | JC69 | 10 | 1614 | 6 | 31 | Fixed 61 | JC69 | 10 | 1482 | 168 | 23 | Fixed 62 | JC69 | 10 | 2281 | 1138 | 45 | Fixed 63 | JC69 | 10 | 2182 | 724 | 45 | Fixed 64 | JC69 | 10 | 1434 | 525 | 44 | Fixed 65 | JC69 | 10 | 6538 | 1672 | 49 | Fixed 66 | JC69 | 10 | 2410 | 1325 | 40 | Fixed 67 | JC69 | 10 | 5328 | 699 | 52 | Fixed 68 | JC69 | 10 | 1797 | 675 | 87 | Fixed 69 | JC69 | 10 | 4701 | 561 | 45 | Fixed 70 | JC69 | 10 | 5854 | 2525 | 92 | Fixed 71 | JC69 | 10 | 3064 | 1822 | 50 | Fixed 72 | JC69 | 10 | 1557 | 153 | 26 | Fixed 73 | JC69 | 10 | 960 | 195 | 18 | Fixed 74 | JC69 | 10 | 1530 | 6 | 19 | Fixed 75 | JC69 | 10 | 864 | 162 | 23 | Fixed 76 | JC69 | 10 | 1800 | 288 | 31 | Fixed 77 | JC69 | 10 | 1782 | 9 | 30 | Fixed 78 | JC69 | 10 | 1606 | 25 | 28 | Fixed 79 | JC69 | 10 | 1194 | 102 | 29 | Fixed 80 | JC69 | 10 | 1713 | 6 | 32 | Fixed 81 | JC69 | 10 | 1946 | 1577 | 67 | Fixed 82 | JC69 | 10 | 1349 | 524 | 27 | Fixed 83 | JC69 | 10 | 912 | 48 | 27 | Fixed 84 | JC69 | 10 | 3989 | 2918 | 105 | Fixed 85 | JC69 | 10 | 1863 | 150 | 29 | Fixed 86 | JC69 | 10 | 1241 | 19 | 23 | Fixed 87 | JC69 | 10 | 1138 | 298 | 27 | Fixed 88 | JC69 | 10 | 1335 | 3 | 28 | Fixed 89 | JC69 | 10 | 3489 | 384 | 58 | Fixed 90 | JC69 | 10 | 3948 | 2640 | 66 | Fixed 91 | JC69 | 10 | 3812 | 750 | 43 | Fixed 92 | JC69 | 10 | 855 | 537 | 35 | Fixed 93 | JC69 | 10 | 999 | 3 | 16 | Fixed 94 | JC69 | 10 | 1428 | 546 | 37 | Fixed 95 | JC69 | 10 | 5307 | 2118 | 41 | Fixed 96 | JC69 | 10 | 2400 | 609 | 35 | Fixed 97 | JC69 | 10 | 1035 | 0 | 16 | Fixed 98 | JC69 | 10 | 1110 | 231 | 34 | Fixed 99 | JC69 | 10 | 2487 | 1310 | 65 | Fixed 100 | JC69 | 10 | 1443 | 612 | 33 | Fixed COMPRESSED ALIGNMENTS 10 19 P ^Age001 AAGGCACAAC TCCTTAXXX ^Adi002 AAGGCACAAC TTTCACXXX ^Adi001 AAGGCACAAC CCTCACXXX ^Aru127 AAGGCACAGG TCCCATXXX ^Aru001 AAGGCACGAG TCCCATXXX ^Ama006 AAGGCCGTAC TCCCATXXX ^Smi165 AAGTTAAAAC CCCTATAXX ^Aga001 AGXGTACTAC TCCCATXAX ^Ama018 AAGGCCGTAC TCCCATXXX ^Aga002 AGXGTACTAC TCCCATXAX 905 4 3 17 1 2 1 1 2 2 1 1 3 1 6 1 3 3 3 10 18 P ^Age001 GGCGCACCTG CAATTXXX ^Adi002 GGCGCACCTG TGGCACAC ^Adi001 GGCGCACCTG CGGCACAG ^Aru127 GGCGCAGTAC CAGCGCGC ^Aru001 GGCGCACTAC CAGCGCGC ^Ama006 GGCGCGCCTC CAGCACAC ^Smi165 GGCGTACCGG CAACACAC ^Aga001 GGCACACCTG CAGCACAC ^Ama018 GGTGCGCCTC CAGCACAC ^Aga002 GACACACCTG CAGCACAC 777 1 2 5 25 3 1 1 1 1 1 2 1 39 1 70 1 1 10 103 P ^Age001 CGGACTTGGT CCGCTATTGT AAAGACGTTA CGGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 CGGACTTGGT CCATCCGCAC GGCTGGCGCC XXXCGGTTGA AGTGAGTTAA ACCTAAAGGG AGGTAGGTCA CTACACAGCT GGTCXXXXXX XXXXXXXXXX XXX ^Adi001 CGGACTTGGT CTGCCCGCAC GGCTGGCGCT XXXCGGTTGA AGTGAGTTAA ACCTAAAGGG AGGTAGGTCA CTACACAGTC AAGTXXXXXX XXXXXXXXXX XXX ^Aru127 CGGACTTGAG TCGCTATTGT AGCTGGTAAA XXXCGGTTGA AGTGAGTTAA ACCTAAAGGG GTAGTCAATG TCTACGXXCT GAGTTAGXXX XXXXXXXXXX XXX ^Aru001 CGGACTTAGG TCGCTATTGC GAAGGAGAAA CAXCGGTTGA TAGCGXXXXX XXXXXXXXXX AGAGTAXXXX XXXXXXXXGX XACXXXXCXX XXXXXXXXXX XXX ^Ama006 CGGACCCGGT CCGCTAGCAC GGCTGGCTCC XXXCGGTCAG AGTGGGTTAA ACCTAAGCCX ATGGTGGTCA CCTATXAACT TAGTTGCXAT AAGAGAGXXX XXX ^Smi165 CGGAGTTGGT TCGGTCTCAT GACCGGCTAC XXXCAAXTGA AACXAGTTAA ATTATXAGCG ATATTTGATC GTTAACAGCT GAGTTACXAT AGTCTCXTTA XXX ^Aga001 CGACCTCGGT CCGCTAGCCC GGCTGGCTCC XXXCGGTTGG AGTGGGTTTC XCTGGAATGG ATGGTGGTCA TCTXACXXCT GAGTTACXAC XATTAXXTAX GXX ^Ama018 CGGACCCGGT CCGCTAGCAC GGCTGGCTCC XXXCGGTTAG AGTGGGTCAA ACCTAAACGG ATGGTGGTCA CCTATCXXCT TAGTTACXXX XXXXXXXXXX XXX ^Aga002 CTGCCTCGGT CCGCTAGCCC GGCTGGCTCC XXXCGATTGG AGTGGGCTAC ACTTGAACGG ATGGTGGTTA TCTAACXXCT GAGTTACXAT XAGAAXXXXX XAX 1231 1 1 7 33 3 5 17 11 6 2 3 1 1 11 2 11 6 1 1 4 1 31 1 15 3 1 1 1 1 717 168 375 325 14 2 3 1 1 1 87 4 2 3 1 629 1 2 3 2 2 26 1 1 1 11 4 1 1 12 6 2 1 1 2 1 1 1 1 1 1 3 2 1 1 1 5 2 2 1 1 1 1 2 5 1 1 49 1 1 214 1 1 1 1 42 80 10 2 102 36 51 1491 10 56 P ^Age001 ACGATTGCGC CAGACATCGA TAGTGAAGCT AGCXXXXXXX XXXXXXXXXX XXXXXX ^Adi002 ACGATTGCGC CAGACATCGA TAGTAGGATC GAXTAGCTCA AXXXXXXXXX XXXXXX ^Adi001 ACGATTGCGC CAGACATCGA TAGGGAAATC GAXXXXXXXX XXXXXXXXXX XXXXXX ^Aru127 ACGATTGCGC CAGACATTAG CGTTGAAGCC GAXTAGCTCG GAGTAXXXXX XXXXXX ^Aru001 ACGATTGCGC CAGACACCGG CGTTGAAGCC GAXXXXXXXX XXXXXXXXXX XXXXXX ^Ama006 ACGATTGCGT TTATTTTCGA CGCTGAAGCC GAXTAGCTGA GAGTATTGCG TACXXX ^Smi165 ACGATACXXC CAATAXTCAA TGGTGGTGTT GXXTAGTCCA GAGCXXXXXX XXXAXX ^Aga001 ACGGGTGCAC CTGTTATCGA CACTGAAGCC GAXTATCCCA GAACXTTGCT XXXXXX ^Ama018 ACAATTGCGC TTATTATCGA CGCTGAAGCC GAXTGGCTGA GAGTATXXXX XXXXXX ^Aga002 ATGAGTACGC CTGTTATCGA CGCTGAAGCC GAXXXXXXXX XXXXXTTCXX TGXXTX 2241 1 2 2 1 130 1 136 2 1 1 5 1 1 1 1 1 3 1 3 1 1 1 1 1 1 1 4 1 1 13 1 9 90 2 6 1 3 1 1 1 19 1 1 33 84 9 1 160 25 765 109 479 197 187 7 10 30 P ^Age001 GTCGACGGCC AATATTATAG ACTXXXXXXX ^Adi002 GTCGACGGCC AATGCCGAGT CTXATGAAGC ^Adi001 GTCGACGGCC AATATCGAGT CTXATGAAGG ^Aru127 GTCGACAATX XXXAXTAAGT CXXATGACXG ^Aru001 GTCGAGGGTX XXXAXTGAGT CXXATGTCXG ^Ama006 GTCAGCGATC AACATTAAGT CTXATGACXG ^Smi165 GTTGACGGTC AGCATTATGT TTXATAACGG ^Aga001 GCCGACGGTC AACATTGAAT CTXACGACGG ^Ama018 GTCGGCGATC GACATTAAGT CTXATGACXG ^Aga002 GCCGACGGTX XXXAXTGAAT CXXACGACXG 1241 2 19 2 1 3 3 2 1 143 2 1 1 3 1 1 1 1 1 29 1 2 3 141 2 7 1 3 3 2 10 15 P ^Age001 TCCTACCTAC TGCTG ^Adi002 TCCTACCTAC TATCT ^Adi001 TCCTACCTAC TATCT ^Aru127 TCCTACCTGT CGCCT ^Aru001 TCCTACTCGT CGCCT ^Ama006 TCCTATCTAT CGTCT ^Smi165 TCCTTCCTAC CGTTT ^Aga001 TCCCACCCAC TGTTT ^Ama018 TCTCACCTAC TGTCT ^Aga002 TGCCACCTAC TGTCT 1107 1 2 1 29 2 2 1 1 1 1 1 1 1 7 10 63 P ^Age001 CAAGTGTGCT AAGACACTAC CTTAGTCCAA ATACTGATCC AXXXXXXXXX XXXXXXXXXX XXX ^Adi002 CAAGTGTGCT AAGACACTAC CTTAGTTTGG GCGTCATCTT XCATTCTAGC AXXXXXXXXX XXX ^Adi001 CAAGTGTGCT AAGACACTAC CTCTTXCCGG GCGTCATCXX XCATTCTAGG XTTCTGGTTT TXX ^Aru127 CAAGTGTGCT AAGACGTCGT TGTAATCCAA ACGTCATACT XCATTCAGXA XTTCTGGTCG XXX ^Aru001 CAAGTGTGCT AAGCTACTGT TGTAATCCAA ACGTCATACT XCATTCAGXA XTTCTGGACG XXX ^Ama006 CAAGTGTGCC TGAACACTAC CTTAGTCCAA ATGTCATCCT XCATCTTGXC XTTCTGGTCG XXX ^Smi165 CAAGTTGCGT AAGATACCAC TGTAGTCGAA GCATCAGCTT XCAATCTGGG ATTCTAATCA XTX ^Aga001 CAAACGTCAT AGAACATTAT CGTAGTCCAG ACGCCATCCT XCGTTTTGGT ATTGXGXTCG XXX ^Ama018 CATGTGTGCT TGAACACTAC CTTAGTCCAA ATGTCATCCT XCATCTTGXC XTGCTGGTCG XXX ^Aga002 CGAGCGGCAT AAAACATTAT GGTTGXCCAG ACGCTATCXX XCGTTTTGGT XTTCTGGTCG TXX 4122 3 6 3 15 153 1 1 1 5 11 1 1 1 1 4 1 1 17 3 1 2 7 14 1 39 5 1 28 1 1 2 3 1 1 32 1 1 1 1 9 147 1 10 2 1 3 3 2 1 1 30 1 3 8 2 1 1 1 1 39 111 18 10 83 P ^Age001 CTTCTGTCCT TTCGCGCATA TTTGGCTAGC CAGACTCCAA AATGATTCTG GAGAXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 CTTCTGTCCT TTCGCGCATA TTTGGGCGAG AGAGTCTGGC CCGACGGGXX XXXXGCATAA CAACTAATCT TACTCATXXX XXX ^Adi001 CTTCTGTCCT TTCGCGCATA TCCTTCTAGG AGAGTCTGGC CCGACAAATG AXXXGCATAA CAACTAATCT TACCTCCGCC TXX ^Aru127 CTTCTGTCCT TTCGCAGGCG CTTTTCTAAC CAGATCTGGC CCACTGAATC AXXXGCATAA CAACTATGTC CGTTCCCGCT CXX ^Aru001 CTTCTGTCCT TTTCTGCGCG CTTGTCTAAC CAGATCTGGC CCACTGGAXX XXXXGCATAA CAACTGTGTC CGTTCCCXXX XXX ^Ama006 CTTCTGTCCC CCCGCGCATG CTTTTCTGAC CAAGCTTGGC CTGATGAATG AXXXGCATAA CGTTCAATCT CGTTCCCGTC CXX ^Smi165 CTTCGTXXXT XXCCXGXAXA XTXXXCXAXC AXAXCXCGGG XXTXXXXXXX XAAXGCATAC XAATCAATTX TGXTTCXXXX XTX ^Aga001 CTTTTGTCTT TTCGCGCATG CTTGTCTAAC CAAACCTCGC CCGATGGAXX XXXXGCACTA CAACTAAGCT CGTTCCCXXX XXA ^Ama018 CTACTATTCC TCCGCGCATG CTTTTCTGAC CAAGCCTGGC CTGATGAATG AXXXGCGTAA CATCCAATCT CGTTCCCGCC CXX ^Aga002 CCTTTGTCTT TTCGCGCATG CTTGTCTAAC CAAACCTCGC CCGATGGAXX XXXXGGATTA CAACTAAGCT CGTTCCCXXX XXX 816 1 1 3 32 1 358 1 1 1 2 1 1 1 1 1 2 7 3 1 1 3 1 2 1 5 2 1 1 3 1 3 1 1 1 1 36 1 12 2 340 1 1 1 1 1 1 3 29 1 24 649 32 398 1129 1 1 1 2 61 47 2 7 1 1 2 3 1 2 1 2 5 1 1 1 1 1 73 1 1 3 60 9 10 23 P ^Age001 GAATCACTGA GAAGGCACGA CCA ^Adi002 GAATCACTGA GAAGGCGTAG TAG ^Adi001 GAATCACTGA GAAGATACGG TAG ^Aru127 GAATCACTCG ATGAGCACGA CAG ^Aru001 GAATCACGGG ATGCGCACGA CAG ^Ama006 GAATTGTTGA GTGAGCACGA CAG ^Smi165 GAAACATTGA AATGGCACAA TCG ^Aga001 GAGTCACTGA GTGAGTACGA CAG ^Ama018 GGATCGCTGA GTGAGCATGA CAG ^Aga002 GAGTCACTGA ATGAGTACGA CAG 1710 2 2 45 2 3 1 1 3 2 1 1 1 1 3 1 1 1 1 5 1 1 11 10 13 P ^Age001 ACCGGTTTTA TCX ^Adi002 ACCGGTTTCG CAX ^Adi001 ACCGGTTCTG CAX ^Aru127 ACCGGTCTTA CAX ^Aru001 ACCGGTCTTA CAX ^Ama006 ACCGCCTTTA CAX ^Smi165 ACCAGTTTTA TAC ^Aga001 ACTGGCTTTA CAX ^Ama018 AACGCCTTTA CAX ^Aga002 ACTGGCTTTA CAX 856 1 3 12 2 1 3 2 1 2 1 4 132 10 28 P ^Age001 CTCGAGGATT CAATCGCAAG GCTACAXX ^Adi002 CTCGAGGATT CAACTATGGA AAAXXXXX ^Adi001 CTCGAGGATC TGGTCGCGGA AAAXXXXX ^Aru127 CTCGAGGCCT CAGTCGCAGA AAAAGXTA ^Aru001 CTCGAGACCT CAGTCGCAGA AAAAGXXX ^Ama006 CTCGGAGATT CAATCGCAAA AAAACXTC ^Smi165 CTAXAAGAXT TXGTCAXXGG AGXXXXXX ^Aga001 CCCGAGGATT CAATCGCAAA ACAACXXX ^Ama018 CTCGGAGATT CAATTGCAAA AAAACXTC ^Aga002 CCCGAGGATT CAATCGCGAA ACAXXXXX 570 1 15 62 1 1 1 4 2 3 3 2 1 3 1 1 1 1 1 1 4 1 4 77 1 3 41 1 10 23 P ^Age001 ACTATGCCAT TGATTCGGCX XXX ^Adi002 ACTATGCCAT TGATTCACGA CCX ^Adi001 ACTATGCCAT TGATTCACGA CAX ^Aru127 ACTATGCCAT TGTCGGGCGA CCX ^Aru001 ACTATGCCAT TATCGGGCGA XXX ^Ama006 ACTATGCCGC CGATGGGCGA CCX ^Smi165 ACTATAATAT TGATTGGCAA CCX ^Aga001 ACCGGGCCAT CGACGGGCGA CCX ^Ama018 ACTATGCCAC CGATGGGCGA CCX ^Aga002 AGTGAGAAAT TGACGGGCGA CCT 914 29 1 1 1 15 2 1 1 3 1 1 3 1 1 1 7 6 1 18 11 1 84 10 101 P ^Age001 CAAAAACAGC ATAGAAGTAA CGGCAAGCAT AGCGGGTGGG ATACCCCGAT CTGTACGAGC TTCTTTACAG TGGXXXXXXX XXXXXXXXXX XXXXXXXXXX X ^Adi002 CAAAAACAGC ATAGAAGTAA CGGCAAGCAC GAGCCACACA GAGTTGGTTX XXXXXXXXXX XXXXXXXXXX XXXCCGGGCC CGACAGGCGG TTCTGXXXXX X ^Adi001 CAAAAACAGC ATAGAAGTAA CGGCAAGATT AGCCCACACA GAGTTGGTGT CTGTACGAGC TTCTCCTGGX XXXCCGGGCC CGACAGGCGG CGTXXXXXXX X ^Aru127 CAAAAACAGC ATAGAAGTAA CGATCGACAT AGCGGGTGGG ATACTGGTAT CTGTACGAGC TCTCTTTGTG TGGCCGGGCC CGGTGTATAA TGTTXXXXXX X ^Aru001 CAAAAACAGC ATAGAAGTAA AXGCCGACAT AGCGGGTGGG ATGATGGTAT CTGTACGAGC GCTCTTTGTG TGGCCGGGCC CGGTGTATAA TGTTXXXXXX X ^Ama006 CAAAAACAGC ATAGGTTGGX CGGCAAACAT AAAGGGTGCA GCACCGGTAT CTGTACGTTX TTXXTCTGXG TTACCGGGCA AAACAGATAA TGTTXTTXXX X ^Smi165 CAAAAACAAA GGGXAAGGGA CGGCAAGCAT AGCGGGCCCA TTACCCGTAT CTGTGTXAGC TTCTTCTGGG CGGCCGAXXC CXACGCGCAT TTXXXXXAXX X ^Aga001 CAAAATTXGC ACXGAAGTXA CGGAAAGCGT AGCGGATGGA GTACCGGTAT CTACACGAGC TTCTTTTTGG TGGCCCGGTC CGATACGTAA TGTTXXXXXX X ^Ama018 CAAGXACAGC ATAGATXGGX CGGCAAACAT XGAGTGTGCA GCACCGGTAT CCGTACGTCX TTXXTCTGXG TTTCTGGGCC AAACAGATAA TGTTXTGXAG X ^Aga002 CGXAAATXGT XCXGAAGTXA CGGCAXGCGT AGCGGATGGA GTACCGGXAT GTGCAGGAGC TTCCTTTGGG TGGCCCGGTC CCATACGTAA TGTTXXXXAX X 855 4 13 1 3 3 10 8 40 2 1 1 3 3 2 13 1 5 1 6 1 3 2 1 8 1 1 4 1 2 1 1 1 19 1 3 2 2 4 4 1 1 2 1 1 1 21 1 1 359 1 2 2 1 21 1 1 2 1 6 1 2 1 1 7 2 8 1 1 15 1 1 1 164 2 4 16 51 1 1 2 1 2 1 1 1 1 2 6 1 2 1 1 3 1 5 1 13 4 4 7 10 153 P ^Age001 CCAACTTGAA GAGTACGTAG GAGCGAGAGC TCGTACACCA TCCCCTTTCC GTTAAGGTAC AGTTGCCTCA CGAGAAGCGC CGTGCTTCCC CTGGGTGGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 CCAACTTGAA GAGTACGTAG GAGCGAGAGC TCGTACACCA TCCCCTTTCC GTTAAGGTTT GTCATTTAAT TAGAGGTTAA TACATCCTTT GCATACACTT GATCGCTAGG TCGTCTTCCG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi001 CCAACTTGAA GAGTACGTAG GAGCGAGAGC TCGTACACCA TCCCCTTTGG TCCTCATAAC AGTTGCCTCA TAGAGGTTAA TACATCCTTT GCATACCATT GATCGCTAGG TCGTCTTCTA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Aru127 CCAACTTGAA GAGTACGTAG GAGCGAGAGT ATACTTGTTG CTTTTCACCC GTTAAGGAAC GTCATTTAGG CGAGAAGCGC CACATCCTTT GCATACACTT GATCGCTAGG TTACACGACA ACCACAATTA AGTCGGGAAT CAAXXXXXXX XXX ^Aru001 CCAACTTGAA GAGTACGTAG GAGCCGAGAC TCGTACGTTG CTTTTCCXCC GTTAAGGAAA AGTTGCCACA CGAGAAGCGC TGTGCCCTTT GCATACGCTT GAXXXXXXXX XTXXXXXXXX ACCACAATTA GTATXXXXXX XXXAAGATXX XXX ^Ama006 CCAACTTGAA GAGCGTAACA XXXXGAGGXC ATACXXACCA CTTTXXTCCC GTTACAXAAC ATCATTTAAG CGAGAAGTAX CACAXCCTTT GCAAXXACTT AXTGXXXXXX XCAXXXXXXX ACCACAGXXX AGATGCXXXX XXXXXXXXGX XXX ^Smi165 CCAACCCTTT XXXTATAGGX GTXXGGTGGC TCACAXATTT TTTTGXTXCC GCCXAATAAC GGTTGTTTGG CGGACCXCGC TGTAXTTTTT GGXXGXAATG TAXXGCAXXX XCXTAXXXXX ATTXXXXTCX AXXXXXGCXX XXXXXXXXXT XXX ^Aga001 CCACTTTTTG GGCTACGTAG GAGAGAGAGC TTGCACACTA TCTTCCTTCC GTTAAGGTAC AGTACCTAAG CAAAACGCAC CGCGTTCCCT GCATACGCTT GATCGATAGG CCGTCTTACA ACTACCGXXA AGATXXGAAC AXXAGXXXXX AXX ^Ama018 CCGACTTGAA GAGTGCATCG GAGCGAGGGC ATACACACCA CTTTCTTCCC GTTACAGAAC ATCATTTAAG CGAGAAGTAC CACATCCTTT GCATACACTT AXTCGCTAGC CCATCTGACA ACCATAAXXA AGAAGGGAAT AAGXXGGXXX ATX ^Aga002 CGAATTCGTA GACTACGTAG GAGAGAGAGC TCGTACACTA TCCTCCTTCG CTCAAGGAAC GGCAGTTTAG CAAGAAGCAC CACATTCCTC GCATACCATT GATCGATAAG CCGTCTTACA ACTACCGXXA AGATXXGAAC AXXAGXXXXX AXX 4407 15 4 39 8 220 1 47 1 4 105 1 1 4 14 3 2 3 3 16 55 45 163 1 18 21 1 1 1 9 2 2 1 17 1 1 24 2 1 2 1 7 3 1 1 1 1 1 7 13 1 1 3 1 1 1 1 2 1 1 1 2 2 1 1 12 8 8 1 1 20 1 2 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 2 23 4 1 1 1 4 1 1 10 3 1 6 6 1 66 2 48 524 1 10 1 1 2 1 1 8 1 1 1 1 34 30 1 192 3 2 1 10 11 10 1 3 4 1 467 46 1 3 39 1 1 345 54 64 2 90 3 1 3 60 3 1677 1074 10 37 P ^Age001 GGGTTGGATA GGCCTCTCTC TAATTXXXXX XXXXXXX ^Adi002 GGGTTGGATA GGCCTCTCGT CGCCXTTAGT GATTCXX ^Adi001 GGGTTGGATA GGCCTCTTGT CGCCXTTAGT GATTTXX ^Aru127 GGGTTGGATT ATTTXXXCTC CGTXTTAXXX XXXXTXX ^Aru001 GGGTTGGATT ATTTXXXCTC CGTXTTAXXX XXXXTXX ^Ama006 GGGTTGGGXA GGTTTCTCTC CGCTTXXAGT GGXXXXX ^Smi165 GGGTCAAATA AACCTCCCTT CGCTTXXAGT AATXXXX ^Aga001 GGAXTGAAXA GGCTTXTCTC TGCXTTAAAX GAXTTTX ^Ama018 GGGTTGGGXA GGTTTCTCTC CGCTTXXAGT GGXXXXX ^Aga002 GAAXTAAAXA GGCTTXTCTC TGCXTTAAAX GAXTTTX 1518 2 2 1 49 2 1 9 2 6 1 2 1 2 1 2 1 1 5 1 1 8 1 1 3 3 1 27 1 2 1 1 1 1 1 9 3 10 33 P ^Age001 AGGAAACTCT AGCAGGGACG AGTCCGTAAG XXX ^Adi002 AGGAAACTCT AGAGTATGTA CAGAXXXXXX AXX ^Adi001 AGGAAACTCT AACATATGTA CAGGXXXXXX AXX ^Aru127 AGGAAACTCA GGCAGGGATA CCACCGTXXX XXX ^Aru001 AGGAAACTGT GGCAGGGATA CCACCGTXXX XXX ^Ama006 AGGAAATGCT AGCAGGGGCA CGACCGTXXX XAX ^Smi165 AGGAAGCTCT AGCAGAAATG CGAGCGCXXX AXX ^Aga001 AGGGGACTCT AGCGTATGTA CAAGCXXAGX AXX ^Ama018 AGCAAACGCT AGCAGGGGCA CGACCGTXXX XAX ^Aga002 AAGAGACTCT AGCGTATGTA CAAGCXXXXX AXX 1354 2 1 3 5 34 1 2 4 1 5 7 6 1 5 4 2 1 3 2 12 1 1 1 3 8 1 14 1 3 6 3 69 10 9 P ^Age001 TTTCGCAGG ^Adi002 TTTCGTGTA ^Adi001 TTTCACGTA ^Aru127 TTTGGCGTA ^Aru001 TTTGGCGTA ^Ama006 TTTCGCGTA ^Smi165 TTGCGCATA ^Aga001 TGTCGCGTA ^Ama018 TTTCGCGTA ^Aga002 TGTCGCGTT 842 2 15 1 2 1 2 4 1 10 86 P ^Age001 CTCTTTACCT ACGGTTAGGA CACTATCTAC ACTAGCCGTA GCGTGCGCGG GCGGAATGTC TGCAGCAXXX XXXXXXXXXX XXXXXX ^Adi002 CTCTTTACCT ACGGTTAGGA CACTATCTAC ACTAGCCGTA GCGTCGATAC AAACTCCAGG CCGXXXXGGA CAATTGGTGA GCGXXX ^Adi001 CTCTTTACCT ACGGTTAGGA CACTATCTAC ACTAGCCTGG TTACGCGTAC AAACTCCAGG CCGAAXXGGA CAATTGGTGA GCGXXX ^Aru127 CTCTTTACCT ACGGTTAGGA CACTACAAGT CTCTTTXGTA GCACGCACGG GAACTCCAGG CCAAGXXGGA CAATTGGTGA AGAXXX ^Aru001 CTCTTTACCT ACGGTTAGGA CCAGXTCTGT CTCTXXCGTA GTGCGCACGG GAACTCCAGG CCGAGXXGGA CAAGGTTXXX GGXXXX ^Ama006 CTCTTTACCT ACAAGGGAXX XACTATCTAC ACTAGCCGTA GCGCGCGCGG ACGGACCAGG CTGAGXXGGA CGTTTTTTGG GGAGXX ^Smi165 CTCTTTTTTG GXGGGCXXGG XAGXATTXAC ATCXGTXGTG ATGCGTGCCX GCAXXACAAX XTGAGCXGTX XXXTXTXXXX XXXXGX ^Aga001 CTCACXACTA XCGGTTAAGA CACTATCTAT GCCAGCCGCG GCACGCACGG GAGGTCCCGC CCGAGXXGGA TATTTGGTAA GGGXXX ^Ama018 CTTTTTACCT ACGAGGGAXX XACTATCTAC ACTAGCCGTA GCGCGCGCGG ACGGACCAGG CTGAGXXGGA CGTTTTTTGG GGAGXX ^Aga002 CACTCXAATA XCGGTTAAGA CACTATCTAT GCCAGCCGCG GCACGCACGG GAAGTCCCGC CCGAGXXGGA TATTTGGTGA GGGXXX 1443 6 1 3 15 2 86 1 1 1 1 332 1 25 11 1 8 1 5 1 3 1 1 1 1 5 1 2 7 1 1 1 1 3 1 1 3 2 1 1 1 1 1 1 8 1 1 12 1 5 1 1 1 1 2 13 37 2 3 1 9 1 1 5 1 15 9 3 1 80 1 1 1 1 2 1 1 99 1 1 1 3 1 3 5 594 10 32 P ^Age001 AGCTTCAGGG TGCTCTTAGG CTGTTAGGAG GG ^Adi002 AGCTTCAGGG TGCTCTTAGA TCAGCGAAGA AC ^Adi001 AGCTTCAGGG TGCTCCAGTG CTGGCGAAGA AC ^Aru127 AGCTTCAGGA ACTATTTAGG CCATTAAAGA TA ^Aru001 AGCTTCAGGG ACTATTTAGG CCATTAAAGA TA ^Ama006 AGCTTCAGTG TGCATTTACG CCATCCGAGA GA ^Smi165 AGCTCAXXGG TGTTTTATGG TTATTAGGGT GC ^Aga001 AGACTAAGGG TCCATTTAGG CCATCAAAGA GA ^Ama018 AACTTCAATG TGCATTTAGG CCATCCGAGA GA ^Aga002 AGCCTAAGGG TCCATTTAGG CCATCAAAGA GA 1939 3 1 7 63 1 17 1 2 2 4 2 2 6 6 11 1 1 1 9 1 1 2 2 1 1 1 1 17 1 1 1 10 37 P ^Age001 AAGACAACAT GCGATGCGCG TCGGGGACCA CCTTCAX ^Adi002 AAGACAACAT GCGATGCGCG TCGGGGCATC TGCGTCX ^Adi001 AAGACAACAT GCGATGCGCG TCGGGTACCC TGCGTCX ^Aru127 AAGACAACAT GCGACATATA CGAXXGACCA CGCGTCX ^Aru001 AAGACAACAT GCGCTGCATA CGAGGGACCA CGCGTCX ^Ama006 AAGACAACAT GTAATGCGCG CGAGGGACCA CCCGTCX ^Smi165 AAGACAATGC CCAATGGGCT TCAGTGACGA TGTGTTX ^Aga001 AAGGTGXCGC ACGATTCGTC TGGGGGATGA CCCTTCX ^Ama018 AAAACAACAT GTAATGCGCG CGAGGGACCA CCCGTCX ^Aga002 AGGATTACAC GCGATGCGCG CCGGGGACTA CCCTTCX 2019 3 4 49 6 1 3 77 9 1 1 5 1 6 1 1 1 7 1 1 1 1 1 25 2 3 2 1 1 11 1 1 2 1 14 1 6 10 36 P ^Age001 CTAACACGTT GGAGACCGAC TGAATTAACT AXXXXX ^Adi002 CTAACACGTT GGAGACCGAC TGAGGGGGTG GCGXXX ^Adi001 CTAACACGTT GGAGACCCGA CCXATGGGTA CCAAXX ^Aru127 CTAACACGTT GGGAGTTGAC TGAAGTGGTT GCGXXX ^Aru001 CTAACACGTT GAAGGTTGAC TGAAGTGGTT GCGXXX ^Ama006 CTAACACAGC XGAGATGGAC TAAAGTGGTT GCGXXX ^Smi165 CTAATXXGTX XGAXACCGGA AGAAGTAGXT GCGXAX ^Aga001 CTCGCATGGT XGAGACTGAT TGAAGTGGTT GCGXXX ^Ama018 CTAACACGTT XGAGACTGAT TGAAGTGGTT GCGXXX ^Aga002 CCAGCATGGT XGAGACTGAT TGAAGTGGTT GCGXXX 989 1 5 1 91 180 1 2 1 1 6 1 2 1 1 1 1 60 10 1 2 1 9 4 1 2 2 4 3 1 1 2 1 3 306 30 10 67 P ^Age001 TCGACTCTAA AGGAGAGTGA ACGGAGGTTG CAAGCCACGA ATATCTGGGT ATAACTTTCT XXXXXXX ^Adi002 TCGACTCTAA AGGAGAGTGA CGAAGAACCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Adi001 TCGACTCTAA AGGAGAGTGA AGAAGAACCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Aru127 TCGACTCTAA AGGAGAAGCG CCGGAAAAGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Aru001 TCGACTCTAA AGGAAGGTGG CCGGAAACCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Ama006 TCGACTCTAT GAATGAGTGA CCGAGAACCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Smi165 TCGACCACXA AGAGGGGGXA CCAAGGAAGG CAAGTTTTTC XXXXXXXXXX XXXXXXXXXX AXXXXXX ^Aga001 TCGCTTCTAA AAGAGAGTGA CCGGGAATCG CAGCCCATAG ATATCTGAAC CCCXXXXXXX XAXXXXX ^Ama018 TCAACTCCAA GAGTGAGTGA CCGAAAACCG CCAGCCACTG ATAAGXXGGT ACGACTCCTX XXGTTXX ^Aga002 TTGATTTTAA AAGAGAGTGA CCGGGAATCG GAAACTXTGG AGXTTTCGAA XTGAGXTAXX XXGGXGX 1771 2 13 1 4 55 2 1 15 2 3 2 1 2 2 1 9 13 4 12 1 10 1 1 1 1 9 1 1 3 1 1 1 1 1 1 1 1 1 1 16 3 12 2 1 1 1 13 15 9 11 3 2 12 19 149 1 1 82 3 21 126 2 1 914 6 49 10 33 P ^Age001 CTCTTTACGT GTTACTAGAT AGGCGCCXXX XXX ^Adi002 CTCTTTACGT GTTACTAGGA TXXXXXXATA CTX ^Adi001 CTCTTTACGT GTTACAXXGA XXXXXXXATA CTX ^Aru127 CTCTTTACGC ACCGTTAAAA AGGCGCTATG TAX ^Aru001 CTCTTCTTAT GTCGTTAAAA AGGCGCTATA CTX ^Ama006 CTCTGTACGT ACTGTTAGAA AGGCTTCATG TAX ^Smi165 CTTATTATCT GCTGTTACAA AGGTGCCACA TGX ^Aga001 CACATTTTCT GTTATTAGAA AGTCGCCATA CTX ^Ama018 CTCTGTACGT ACTGTTAGAA AGGCGTCATG TAX ^Aga002 CACATTTTCT GTTATTAGAA AGTCGCCATA CTX 911 3 18 10 3 1 1 1 1 3 8 1 1 1 1 4 27 1 2 8 2 155 1 4 2 2 1 55 2 1 1 1 178 10 17 P ^Age001 CGATCGCTGC AGTGCGC ^Adi002 CGATCGCTGC ACCATAA ^Adi001 CGATCGCTGC GCCATAA ^Aru127 CGATCGTCTA AGTGTAA ^Aru001 CGATCTCCTA AGTGTAA ^Ama006 CGATAGCTGC AGTGTAA ^Smi165 CGACCGCTGC AGCTCAG ^Aga001 CGATCGCTTA AGTGTAA ^Ama018 CGCTAGCTGC AGTGTAA ^Aga002 CAATCGCTGA AGTGTAA 1299 1 2 33 6 1 1 2 1 2 2 7 1 1 2 9 1 10 77 P ^Age001 CAAGAAAGCT GTCGGACGCT GTATACTTGT GGTTTGCATG AAGTGCCATT ACTGATAGTA CACCTCGGTC AXXXXXX ^Adi002 CAAGAAAGCT GTCGGACGCT GTATACTTGT GGTTCATGCA GGACATTGCA GTGCTGCACT TGTTGGCTCX XACTTXX ^Adi001 CAAGAAAGCT GTCGGACGTC ACGCGTAGAG AACXTGCATG AAGTGCCATT ACTGATAACT TGTTGGCAGC AACXXTX ^Aru127 CAAGAAAGCT GTCGGGATCT GTATACTTGT AAATTGCATG GGACATTGCA GTGCGCTGTA TGTTATTGCX XATTTXX ^Aru001 CAAGAAAGCT GTCAAAATCT GTGCGTAACC AATTTGCACA AAGTATTGCA GTGTTCTGTA TGTGGTTACX XATTTXX ^Ama006 CAAGAAAGAA ACGGGACTCT GTATACCTGT GATTTATGCA AGACATTGCA GTGCTCTGCT TGTTGGTGCX XACTTXX ^Smi165 CAAGAGGACT GTCGGACGCT GCACGAGTGC GACTTGTGTA AAACGCCGCA GAACTTCGTT CGGTGGCGCC TACTCXX ^Aga001 CAATGAAACT GCTGGACGCT ACATGCATAT GACTTGCGCA AAGCGCTATA GCGGTTAGCT TGTTGGCGTC AACXXXX ^Ama018 CAGGAAAGCA ACGGGACTCT GTATACCTGT GATTTATGCA AGACATTGGA GTGCTCTGCT TGTTGGTGCX XACTTXX ^Aga002 CCAGGACGCT ACTGTACGCC GTATACTTGT GATTTGCATG AGACGTCGCT GTTCACTGCT TGTTGGCGCX XACTTXX 2187 10 1 8 5 32 1 1 3 10 1 1 1 17 1 6 4 1 10 1 7 7 38 12 1 3 1 1 1 1 1 1 1 3 18 1 1 2 2 6 1 1 1 1 1 26 2 48 1 4 1 3 1 1 1 1 1 1 3 4 1 20 1 1 1 1 1 2 1 8 1 2 1 2 1 393 1053 10 32 P ^Age001 GTGCATGTTC TAGCCGGGCT AAGGAAXXXX XX ^Adi002 GTGCATGTTC TAGCCGGATC GGACCXXXXX XX ^Adi001 GTGCATGTTC TAGCCGGGTC GGACCXXXXX XX ^Aru127 GTGCATGTTC TATTTATACT GGACTXXXXX XX ^Aru001 GTGCATGTTC CGGCCGGGTC GGACTXXXXX XX ^Ama006 GTGCATGTTT TGGCCGGATC GGACCXTGCX XX ^Smi165 GTGCATGCCC TAGCTAAGCC AAAAAXXXXT XX ^Aga001 GTGTCXXTAC TGGTCTGGTC GXACCXTAXX AX ^Ama018 GTACATCTTC TGGCCGGGTC GGACCXXXXX XX ^Aga002 GCGCCTGTTC TGGTCGGATC AGACAXXXXX XX 838 6 4 10 4 65 1 8 1 2 5 1 20 1 6 1 1 1 1 1 3 3 5 1 1 12 41 46 84 12 282 153 10 21 P ^Age001 ACACACCCCC GCAACCTGXX X ^Adi002 ACACACCCCC GCGTTTCCXX X ^Adi001 ACACACCCCC GGATTTCCXX X ^Aru127 ACACACCCTT CCAACTCCXX X ^Aru001 ACACACCACT CCAACTCCXX X ^Ama006 ACATGGXCCC GCAATTCTAX X ^Smi165 ACGCGTCCCC GCAATTGCXT X ^Aga001 ATACACCCCC ACAACTCCXX X ^Ama018 ACATGGXCCC GCAATTCTAX X ^Aga002 ATACACCCCC ACAACTCCXX X 1745 14 50 116 17 4 9 2 2 6 1 2 1 9 1 11 1 1 18 3 3 10 75 P ^Age001 TGAGGACTGT ATTTGCTCTA AAATCCCTGC TCTTGCTGGA GTGCTGCCAX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 TGAGGACTGT ATTTGCTCTA AAATCTTGAG CGCAATGACG CAXXXXXXXG CTAATCGATT GTCTGAAGTA XXXXX ^Adi001 TGAGGACTGT ATTTGCTCTA AAATTTTGAG CGCAATGACG CAXXXXXXXG CTAATCGATT GTCTGAAGTG XXXXX ^Aru127 TGAGGACTGT ATTTGCTCGG GGGCCCCTGC TGCAATGACG TGGCAAXXXG CTAATCGATT GTCTAGGXXA ATXXX ^Aru001 TGAGGACTGT ATTTGCATTA GGGCCCCTGC TGCAATGACG GGGCAAXXXG CTAATCGATT GTCCAGGXXA ATXXX ^Ama006 TGAGGACTGT ACGCATTTTA AAATCCCTGC CCCAATGACG GGGCTAXXXG CTAATCGATA TXXTGGGXXA AGXXX ^Smi165 TGAGGGTAAX XTTXXXTCTG AAGXCCCGTX CCTTATGATX GGGXTACGXG CTAACAAXXT GXXTAGGGAA XXAXX ^Aga001 TGGAXACAAT CTTTGTXCTA AGATCCTGGC CGCAGTGACG GGGCAAXXXG CTGXTGXXXT GTTTGGXXXA AGXTX ^Ama018 TGAGGACTGT ATGTATTCTA AAATCCCTGC CCCAATGACG GGGCTAXXXG CCAATCGATT TXXTGGGXXA AGXXX ^Aga002 TAAAGATTAT CTTTGTTCTA AAATCCCTGC CCTAACGTCG GGXXTAXXXG TTAATCGAGT GXXTAAGGTA XXXXX 1720 6 2 1 3 60 2 3 1 110 1 1 3 1 1 1 1 1 3 1 2 1 2 1 1 9 1 1 1 1 1 17 1 8 1 1 66 1 9 4 1 1 2 4 2 1 1 5 404 414 2 1 3 39 7 1 3 1 1 1 1 2 1 1 1 1 1 25 2 1 14 1 384 1 6 10 23 P ^Age001 TGACATAAAG TACTGGCCAG GGA ^Adi002 TGACATAAAG TACTGGCCGC AAG ^Adi001 TGACATAAAG TACTGAAAAG AAG ^Aru127 TGACATAACT CGTGAGCCAG AAG ^Aru001 TGACATAAAG TACGAGCCAC AAG ^Ama006 TGACATGTAG TGTTAGCCGG GAG ^Smi165 TGACGAAAAG AATTAGAGGG AAT ^Aga001 TGATAAATAG TGTTAGCCAG AAG ^Ama018 TGGCATAAAT TACGAGCCAG GAG ^Aga002 TTATAAATAG TGTTAGCCAG AAG 1068 2 3 3 29 1 1 2 4 1 1 2 1 1 1 4 2 1 1 1 1 9 1 10 30 P ^Age001 CGTGACCTCT CCAACGCAAC CCAATATCAX ^Adi002 CGTGACCTCT CCAACGCAAC GTTGCGCTGX ^Adi001 CGTGACCTCT CCAACGCAGT CCTGCGCTGX ^Aru127 CGTGACCTCT CCAACCTCAC CCAATGCTCX ^Aru001 CGTGACCTCT CCAAGGTCAC CCAATGCTCX ^Ama006 CGTGACCTCC TTCXCGCAAC CCAATATTGX ^Smi165 CGTGACTATT CTGACGCCAT CTAACGCTGX ^Aga001 CGTGGTCTTT TTAXCGCAAC CCACTACTGX ^Ama018 CGCAACCTCT TTAACGCAAC CCAATACTGX ^Aga002 CATAATCACT TTAACGCAAC CCAATACTGX 1992 2 5 1 4 2 46 1 1 3 10 3 1 3 2 3 3 1 2 1 5 1 4 1 1 1 1 8 1 3 10 13 P ^Age001 TCCGAGAACG GGX ^Adi002 TCCGAGAACA TCX ^Adi001 TCCGAGAAGG TCX ^Aru127 TCCGAGATCG GCX ^Aru001 TCCGAGCTCG GCX ^Ama006 TCCGGAAACG GCX ^Smi165 TCCAAGAACG GCA ^Aga001 TTAGAGAACG GCX ^Ama018 TCCGAAAACG GCX ^Aga002 TCAGAGAACG GCX 747 1 4 30 1 3 2 2 1 7 4 5 3 10 36 P ^Age001 AGCGTTCTAT CTTTTTGTCG GGATGTAAGC AXXXXX ^Adi002 AGCGTTCTAT CTTTTTGTCG TAGCACGGAT CXXXXX ^Adi001 AGCGTTCTAT CTTTTTGTCA GGGCACGGAT CXXXXX ^Aru127 AGCGTTCTAT CTTACACATG GGATGCGGAT TACAXX ^Aru001 AGCGTTCTAT CTGTTACATG GGATGCGGAT TXXXXX ^Ama006 AGCGTTCTAC TCTTCTCATG GGATGTGGAT TACAXX ^Smi165 AGCGTCAACT CCTTTTGTTG GGATATAAAT TXXXXX ^Aga001 AGCACTCTCT CTTTTTCGTG GAATGCGGAT TXXXXX ^Ama018 AGTGTTAGCT TTTTTTCATG GGACGTAGGT TAGXCX ^Aga002 AACGCTCTCT CTTTTTCGTG GAATGCGGAT TXXXXX 2085 2 28 6 2 35 45 5 1 3 1 1 1 1 2 2 1 1 1 2 1 1 4 1 1 1 2 2 1 28 1 83 23 2 5 1848 10 18 P ^Age001 AGCGAGCCAG CGAAGGGX ^Adi002 AGCGAGCCAG CGCGAACC ^Adi001 AGCGAGCCAA AAAGAAAC ^Aru127 AGCGAGTTCG AAAAGAAC ^Aru001 AGCGACCCCG CGAAGACC ^Ama006 AGCGGGCCAG AAAAGAAC ^Smi165 AGCCAGCCAG CAAAAACC ^Aga001 AGAGAGCTAG AAAAGAAC ^Ama018 AACGGGCCAG AAAAGAAC ^Aga002 AGAGAGCTAG AAAAGAAC 754 2 3 27 5 2 2 1 5 4 1 2 1 6 2 7 1 3 10 71 P ^Age001 GGAAAAATCC ACCCATCCCT CTCCTTGCCG GAGCCCATTG ACCTGGAXXX XXXXXXXXXX XXXXXXXXXX X ^Adi002 GGAAAAATCC ACCCATCCCT CTCCTCAGTA TGATTTGCGA GGAGAXXACC TTAAAGATCT CTAATGXXXX X ^Adi001 GGAAAAATCC ACCCATCCCT CTCCCTGCCG GAATTTGCGA GGAGAXXACC TTAGGATAGC TGTXXXTXXX X ^Aru127 GGAAAAATCC ACCCATTTTC TCATTTGCCG GGGCCCATTG GGACTXXATX XXXAGATGTX XXXXXXXGGX X ^Aru001 GGAAAAATCC ACCCGACCCC TCATTTGCCG GGGCCCATTG GGATTXXACC XXXGAAXAAC AXXXXXXXXX X ^Ama006 GGAAAAATCA GTGTAXCTXT CTCGTTGCCG GAGCCCGCAX GGATGXXXXX XXXXXXXXXX XXXXXXXXXX X ^Smi165 GGAAAACCTC ACCTATCCCT CCGCTTGCTA AAGCTAACGA AGGACGTACC TCXGAATAAC AGXACXXTXT X ^Aga001 GGAAGTATTC ATTCATCCCT TCACTTGCCG GAGTCCATGA GGAACXXACC XXXGGAXAAC AXXXXXXXXX X ^Ama018 GGAGAAATCC GTCTAXCTXT CTCGTTGCCG GAGCCCGCAX GGATGXXXXX XXXXXXXXXX XXXXXXXXXX X ^Aga002 GAXAATACTC ATTCATCCCT TCACTTAACA TGGTCCATGA GGAACXXACC XXXGGAXAAC AXXXXXXXXX X 4250 10 3 3 8 16 100 1 2 2 22 1 1 1 2 1 9 1 1 17 7 9 1 1 4 6 25 2 1 1 1 1 18 1 2 1 2 1 1 1 2 32 2 1 1 2 1 8 10 1 98 15 675 4 1 7 1 5 1 1 1 2 155 15 11 1008 8 2 3 168 749 10 49 P ^Age001 TGTGTCAATT CTTAAATGCT GGCCACAAAA TCAXXXXXXX XXXXXXXXX ^Adi002 TGTGTCAATT CTTAAATGCT GGGAGTGCCC XXXCAGATGA GATGAAXXX ^Adi001 TGTGTCAATT CTTAAATGCT AACAGTGCCC TCGCAGATGA GATGGGXXX ^Aru127 TGTGTCAATT CTTAAATAAX GGCCATGCCG TCGCAGATGA GGGXAGGXX ^Aru001 TGTGTCAATT CTATGXXGAT GGCCGCGCCG TCGCAGATAC CAGGAGXXX ^Ama006 TGTGTCAAGC AXTTGXXGCT GGCCGCGCCG TCGCAGAXGC CAGGAGXCX ^Smi165 TGTGTCACTT TTTAGAGGCT GGCCGCACCG TCGCAGCTAC CAGGAGXXX ^Aga001 TGTGCTXATT CTTTGXXGCT GGCCGCGCCG TCGCAAATGC CAGGAGXXX ^Ama018 TGTTTCAATC AXTTGXXGCT GGCCGCGCCG TCGCAGAXGC TAGGAGXCX ^Aga002 TAXGTTAATT CTTTGXXGCT GACCGCGCTG TAGCGGATGC CAGGAGXXX 820 1 3 1 7 3 3 25 1 9 1 5 11 11 5 7 2 11 3 6 4 1 8 7 1 1 1 12 1 1 1 1 1 130 3 1 5 3 1 1 1 3 1 1 1 2 1 2 6 10 39 P ^Age001 CATGGCATTA ATCACATTGC GGAAGACCAT CCXXXXXXX ^Adi002 CATGGCATTA ATCACATTGC GACGCGGTGC GXTCGCAXX ^Adi001 CATGGCATTA ATCACATTGG AGAACGGTGC ACTCXXXXX ^Aru127 CATGGCATTA ATCATGCCTC GGCGGACCGC GCTCGCCGX ^Aru001 CATGGCATTA ACTTCACCTC GGAAGACCGC GCTCXXXXX ^Ama006 CATGGCAGCG CTCACATCTC AGCGGACTGC GCTTGTCGX ^Smi165 CATGGGGTTG GTTGCGTTTC GGAAGAATAC GCTCXXXXT ^Aga001 CATTACGTCA CTTACATCTC GGAGGACCGC GCTTXXXXX ^Ama018 CGXGGCAGCG CTCACATCTC GGCGGACTGC GCTTGTCGX ^Aga002 CATGACGTCA CTTACATCTC GGAGGTCCGC GCTTXXXXX 1263 4 3 2 8 66 1 11 8 1 1 1 1 1 5 1 8 1 1 3 2 4 3 1 10 1 1 1 1 25 1 3 2 1 72 2 1 6 12 10 128 P ^Age001 ACTCAGTCTG CTAAAGCGCC CAGACCCCGT GACGAGCGAA ATTGAGTCAA CAGCTATAAG TCTTTAGTCG CCAAACATTX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX ^Adi002 ACTCAGTCTG CTAAAGCGCC CAGACCCCGT GACGAGCGAA AACCGACGGG GGAGAGCTGA CACCGCAATA XXXXXXXXXG CGTCGGGACC TGAGTTGAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX ^Adi001 ACTCAGTCTG CTAAAGCGCC CAGACCCCGT GGTTGCGAXX XTTCGACGGG GGAGAGCTGA CACCGCXXXX XXXXXXXXXG CGTCGGGACC TGAGTTTCCT AGTCACAGAA GAXXXXXXXX XXXXXXXX ^Aru127 ACTCAGTCTG CTAAAGCGCC CAGGTAGTCC CACGGCGCXX XTTGAGTCAA CGAGAGCTGA CACCGGXXXX CTGXXXXXXG CGTCGGGACC TGAGACTCCT AGTCACAGAT AGACAGACTX XXXXXXXX ^Aru001 ACTCAGTCTG CTAAAGCATT AGAACCGTCC AACGAGGGAA TTGGAGTCAG AAAGAGCTGA CACCCGGTTA CTGAAACXXG CGTCGGGACC TGAGACGTCT AGAAGXXXXC XXACACCTXC AGAGTXXX ^Ama006 ACTCAGTCTG CTAGGTTGCC CAGACCCCGC GACGACGCXX XTTGAGCGGG CGGCAGCTGA CACCGGXXXX XXXXXXXXXG CGTCGGGACC TATATTTCCT AGTCACAGGA AGACCGAATC GXXXXXXX ^Smi165 ACTCAGTCAT TCXAAGGGCC CAAATGCTAC AACAAGCAAC GTTGATTCGG CAATTGCTGA CAGXGGGXCA CCGAXAXTXG CGTCGGAGTG XGAGTTGXAX XXXXXXXXXX XXXXXXXXXX XTXXXXXX ^Aga001 ACTTGAAXTG TAAAATCGCT TXGACCCCGC GACGGCXCXX XTXGCGTGGX TGGCAATAGA GTCCGGXXXX XXXXXXXXXG CGGTCCGATT TACCGGACCT XXTXXCXXXX XXXXXXXXXX XXATXCGX ^Ama018 ACACAACCTG CTAAGTCGTC CAGACCCCGC GAGGACGCXX XTTGAGCGGG CGGCAACGGC TTCCGGXXXX XXXXXXXXXG TXTTTXGTCA TTATTATCCT AXTCXCAXXA AXAXXGXXXC GXXXXTXX ^Aga002 AATCGAAXTT TAAAATCGCT TXGACCCCGC GACGGCXCXX XTXGCGTGGX TGGCAATAGA GTCCGGXXXX XXXXXXXXXG CGGTCCGATT TACCGGACCT XXTXXCXXXX XXXXXXXXXX XXATXCGX 5031 4 10 3 28 1 2 22 168 1 1 1 1 5 15 6 1 17 1 4 5 19 1 26 1 1 34 3 1 2 1 4 1 1 1 64 2 1 63 3 1 1 1 37 1 2 1 1 2 1 1 1 1 1 8 2 3 1 71 1 1 1 2 4 1 2 1 1 1 3 4 1 1 18 4 1 1 5 11 34 23 3 20 15 13 5 3 1 1 1 1 1 1 1 1 1 1 1 1 11 53 1 11 28 1 20 126 6 1 1 1 1 1 7 1 3 10 1 1 1 2 1 27 16 45 8 210 230 10 27 P ^Age001 CAGGTCAGTG GTAAGGAGTA AXXXXXX ^Adi002 CAGGTCAGTG GTAAGGAGCG GTCAGXX ^Adi001 CAGGTCAGTG GTAAGGCATG GXXXXXX ^Aru127 CAGGTCAGTG TCGGAAAATG GTCCXTX ^Aru001 CAGGTCAGTA GTGGAAAGTG GTCCXXX ^Ama006 CAGGTCAAAG GTGGAAAATG GTCCXXX ^Smi165 CAGGGTXGTG GCAAATAATG GXXXXXG ^Aga001 CAGATCAGTG GTAAGGAGTA GXXXXXX ^Ama018 CAAGTTAGAG GTGGAAAGTG GTTCXXX ^Aga002 CGGGTCAGTG GTAGGGAGTG GTCCXTX 829 2 1 1 25 1 3 1 1 1 3 1 1 1 1 1 3 1 3 1 1 85 1 1 3 9 87 10 19 P ^Age001 TTCTAAGTTC GTTTGGCCG ^Adi002 TTCTAAGTTC GTTTAATTX ^Adi001 TTCTAAGTTC GTTCAATTX ^Aru127 TTCTAAGTTG ACCTGGTTX ^Aru001 TTCTAAGTGC GCCTGGTTX ^Ama006 TTCTAGAATC GTCTGATTX ^Smi165 TTCCTAGTTC CTTTGGTGX ^Aga001 TTATGAAATC GTCTGATTX ^Ama018 TTCTAGAATC GTCTGATTX ^Aga002 TAATAAGATC GTCTGATTX 1639 2 9 43 1 5 1 1 1 7 1 1 1 4 7 1 8 2 6 10 16 P ^Age001 CATCTGCAGG TGCTTT ^Adi002 CATCTGCAGG TGCCGC ^Adi001 CATCTGCAGG TGTCGC ^Aru127 CATCTGTGAC CACTGC ^Aru001 CATCTGCAAC CACTTC ^Ama006 CATTCACAGG CACTGC ^Smi165 CACCCCCAGA TATTAC ^Aga001 CATCTGCAGG CACTGC ^Ama018 CATTCGCGGG CACTGC ^Aga002 CTTCTGCAGG CACTGC 820 1 24 2 2 1 2 1 3 1 3 1 1 5 1 5 10 54 P ^Age001 TCAGCTGATG TACCTCCTGC AAGGTGCAGG XXXXXXXXXX XXXXXXXXXX XXXX ^Adi002 TCAGCTGATG TACCTCCTGC GGTACCTGXX ATGCGGTTTT CAGAAAGAAC AXXX ^Adi001 TCAGCTGATG TACCTCCTTT AAGACCTGGA ATGCGGTTXX XXXXXXXXXX XCXX ^Aru127 TCAGCTGATG TACCCTACGC AATGTGTCXX ATGCGTAXTT CAGAAGATGT GXGX ^Aru001 TCAGCTGATG TGTTTCCCGC AGTGCTTCXX ATGCGTAXTT CAGAAAGTGT GXXX ^Ama006 TCAGCTGACC CACTTCACGC AATGTGTCXX XXXXXXXXTT CAGAAAGTGT GXXX ^Smi165 TCAGCATTTG AACCTCCTGA ACTGCGTCXX ATGAATAXTT CAGGXAGAAT GXXX ^Aga001 TCAAATGGTG TACCTCCCGC AATGCTTCXX ATCCATAXTT CGXAAAGAGC GXXX ^Ama018 TCGGCTGATC CACCTTACGC AATGTGTCXX XXXXXXXXTT TAGAAAGTGT GXXX ^Aga002 TTAGATCATG TATCTCCCGC AATGCTTCXX AACCATCXTC CAGAAAATGT GXXX 1543 4 3 1 3 34 1 1 3 1 1 8 1 1 3 1 1 1 4 1 2 1 34 6 3 1 9 2 161 19 80 1 4 2 1 1 1 3 321 1 1 1 3 3 9 1 1 4 1 1 7 96 12 67 10 39 P ^Age001 CCGTTGGAAC AGCGGTGCAT GXXXXXXXXX XXXXXXXXX ^Adi002 CCGTTGGAAC AGCGGTGTTC AXXXXXXXXX XXXXXXXXX ^Adi001 CCGTTGGAAC AGCGGTGCTC AGATGGTGXX XXXXXXXXX ^Aru127 CCGTTGGAAA CTTAXXXCAT AGACAAAXAG CCXXXXXXX ^Aru001 CCGTTGGAAA CTTAGXXCAT AGACAAAXAX XXGAXXXXX ^Ama006 CCGTTGGGGC ATTAXXXCAT AGACAAAXAG CCXXATXXX ^Smi165 CCGTCAXAAC XGTCXTTCAT AGCTATXXXX XXXXXXXXX ^Aga001 CTXXTXGAXX AXXXGXXCAC XXXXXXXXXG CTGXCGGGX ^Ama018 CCGCTGGGGC ATTAXXXCAT AGACAAAXAG CCXXATXXX ^Aga002 CTXXTXGAXX AXXXGXXCAT XXXXXXXXXG TTGXCAGTX 444 1 397 1 11 3 69 3 4 2 1 43 3 3 2 43 6 1 1 1 2 9 3 5 7 9 3 42 7 62 2 55 3 6 2 1 255 1 3 10 23 P ^Age001 AACATGACAC CACTAAGAGA AGX ^Adi002 AACATGACAC CACTAAGGAG GXX ^Adi001 AACATGACAC CACTAATGAG GXX ^Aru127 AACATGACAC CGTCGGGAAG GXX ^Aru001 AACATGACAC TACCGGGAAG GXX ^Ama006 AACATGACGT CACTAGGAAG GXX ^Smi165 AACACATTAT TATTCGGAGG GXG ^Aga001 AACGTGATAC CACTAGGAAG GXX ^Ama018 AATATAGCAC CACTAGGAAG GXX ^Aga002 AGCATGACAC CACTAAGAAA GXX 1004 1 5 4 41 1 1 2 1 1 1 2 2 5 1 1 1 2 1 1 8 9 3 10 29 P ^Age001 AGAGCAGAGA TACCGAAGGC GAXXXXXXX ^Adi002 AGAGCAGAGA TACCGATCAT TXCTTGGXX ^Adi001 AGAGCAGAGA TACTAXACAT XXCTTAXXX ^Aru127 AGAGCAGAGA CGTCGXAGGT XXCTTAXXX ^Aru001 AGAGCAGAGA TGTCGXAGGT XXCTTAXXX ^Ama006 AGAGCAGGAT TACCGXAGGT XXCTAAXXX ^Smi165 AGAGTGAAAG TACCAXAGAT XXCCTAXXX ^Aga001 AGAACGAAGA TATCGXAGGT XXCTTAXGX ^Ama018 AGGGCAGGAA TACCGXAGGT XXCTAAXXX ^Aga002 AAAACAAAGA TACCGXAGGT XXCTTAXXX 3325 3 1 7 82 1 1 9 3 1 1 9 1 2 1 58 3 8 2 17 59 84 286 6 1 1 3 9 237 10 37 P ^Age001 AAAGTATTTG GCCCAGTACG CCACATGGTC AATCGXX ^Adi002 AAAGTATTTG GCCCAGTACG CCACATTCCG GGCTXTX ^Adi001 AAAGTATTTG GCCCAGTACG CCACAGGCCG GGCTXTX ^Aru127 AAAGTATTTG GCCCAGTGTA ATCTGTGGTC AACTXTX ^Aru001 AAAGTATTTG GCTTGTAACG CCATGTGGTC AACTXTX ^Ama006 AAAGTATTTA CGCCAGTACG CTCCGTGGTC AGCTXTX ^Smi165 AAAGCGXXXG XXCCGCXACA XCXCXXXGCT XACXXXX ^Aga001 AAATTATTAG GCCTAGTACG CCATGTGGTC AACTXTX ^Ama018 AAGGTATCTA GGCCAGTATG CTCCGTGGTC AGCTXTX ^Aga002 AGAGTGTTAG GCCTAGTACG CCATGTGGTC AACTXTX 849 8 1 3 40 1 671 3 4 2 1 1 5 1 2 1 9 8 1 2 4 1 2 1 2 1 1 3 2 1 8 1 12 13 9 6 4 10 49 P ^Age001 TTGGGTGTGG TGAGCGGTTA TCTTAGGCCG XXXXXXXXXX XXXXXXXXX ^Adi002 TTGGGTGTGG TGAGCGGTCC CTCGGCTXXX CTATCCATCT ATCAATXXX ^Adi001 TTGGGTGTGG TGAGCGGCTC CTCGGCTXXX CTATCCATCT ATCAAGXXX ^Aru127 TTGGGTGTGG TAGTTAATTA TTCGGTCXXX CTATCCATTC GXXXXXXXX ^Aru001 TTGGGTGTGA CGGTTAATTA TTCGGTCXXX CTATCCATCC GXXXXXXXX ^Ama006 TTGGGTACCG TGAGCAATTA TTCGGCCXXX CTATCCATCT GTCAGGXXX ^Smi165 TTGGAXGTGG XGATXAXTTA CCCAXTCCTX CTATTTXXCX XTCGGGTXX ^Aga001 TTAAGTGTCG TGAGCAATTA TTCGGCCXXX CTACCTACCT GTCAAGXXX ^Ama018 TCGGGTGCCG TGAGCAATTA TTCGGCCXXX CTGTCCATCT GTAAAGXXX ^Aga002 TTGAGTGTCG TGAGCAATTA TTCGGCCXXX CCATCCACCT GTCAAGXAX 2428 4 1 7 55 191 4 1 2 5 2 8 7 4 1 1 1 1 3 10 5 3 45 3 33 1 1 537 56 33 156 1 1 10 3 1 111 1 1 1 1 125 2 3 1 1 1675 3 881 10 45 P ^Age001 TATAGAAAGC GACGATTAGA XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 TATAGAAAGC GACGGCGTXX TCACAATCGG AXXXXXXXXX XXXXX ^Adi001 TATAGAAAGC GACAGCGTXX TCACAATCGG TXXXXXXXXX XXXXX ^Aru127 TATAGAAAAT TTTGACGTXX TCACAATTAA AXXXXXXXXX XXXXX ^Aru001 TATAGAAGGC GTTGACGTXX TCACAGXTAA AXXXXXXXXX XXXXX ^Ama006 TATAGAGAGC GAGGACGTXX TCAAGATCGA ATTAAACCTG AATXX ^Smi165 TATGAXAAGC XACXACAXGX TCCCAATCAA ATTATGTXXX XXXXX ^Aga001 TACAAAAAGC GACGACGTXX TGACGATCGA AXXXXXXXXX XXXXX ^Ama018 TATAGAGAGT GACGACGTXX TCAAGATCGA AXXXXXXCTG GXXXX ^Aga002 TTCAAAAAGC GACGACGTXX TGACGATCGA ATGXAGXCCX XAXGX 1245 1 3 32 1 68 2 2 1 1 1 2 1 1 3 9 1 3 1 299 264 1 17 1 1 3 3 1 1 3 2 12 4 53 1 2 3 4 2 133 2 1 47 52 12 10 12 P ^Age001 GAGCGACTCC AX ^Adi002 GAGCGACCTT CX ^Adi001 GAGCGAACTT CX ^Aru127 GAGCGGCTCC CX ^Aru001 GAGCGACTCC CX ^Ama006 GAGTAACTCC CX ^Smi165 GAACGACTTT CX ^Aga001 GGGCGACTCC CX ^Ama018 GAGCAACTCC CX ^Aga002 GAGCGACTCA CX 1013 2 14 2 6 2 1 5 1 1 6 342 10 28 P ^Age001 GTTACCTTTT ATTTGGCTGG GGAGXXXX ^Adi002 GTTACCTTTT ATTTGGTAAT CAGAXXXX ^Adi001 GTTACCTTTT ATTTTACAAT CAGAGATX ^Aru127 GTTACCTTTT ACCCGACTGG CAGAGAGX ^Aru001 GTTACCTTTT GTCCGACTGG CAGAGAGX ^Ama006 GTTACCTACC ATTCGACTGT GGGAGGGX ^Smi165 GTTACTATTT ATTCGGCTAT GTAAXXXX ^Aga001 GTTCTCTTTC ATTCGGCTGT GGGAXXXX ^Ama018 GTCACCCTCC ATTCGACTGT GGGAGGGX ^Aga002 GGTATCTTTC ATTCGGCTGT GGGAXXXX 1315 2 1 3 2 28 1 5 2 3 2 2 7 1 2 2 1 6 1 1 2 1 3 14 82 1 1 9 10 15 P ^Age001 TCTGCAAGCG GCTCX ^Adi002 TCTGCAAGCG ATATX ^Adi001 TCTGCAAGCA ATATX ^Aru127 TCTGCAGAAG GCTTX ^Aru001 TCTGCTAAAG GCTTX ^Ama006 TCTTAAAGAG GCATX ^Smi165 TCCGCAAGCG GTATX ^Aga001 TTTGCAAGAG GCATX ^Ama018 TCTGAAAGAG GCATX ^Aga002 TTTGCAAGAG GCATX 868 5 20 3 2 2 2 5 3 1 7 1 1 10 3 10 28 P ^Age001 TACAGTTATT GCCAACTTXX XXXXXXXX ^Adi002 TACAGTTATT GCCAGTCXXX XXXXXXXX ^Adi001 TACAGTTATT GCCAGTCXAG CAATXXXX ^Aru127 TACAGTTATT GCTGACCXXX XXXXXXXX ^Aru001 TACAGTTATT GTCGACCXXX XXXXXXXX ^Ama006 TACAGTCGCG XCCAACCXXX XXXXXXXX ^Smi165 TACAACTACC XTCAACCXAG GGGAGGGX ^Aga001 TAAGGCTATT GCCAATCXAG CAGCXXXX ^Ama018 TACAGTTGCG XCCAACCXXX XXXXXXXX ^Aga002 TGCGGCTATT GCCAATCXAA CGGTGAXX 1042 3 1 3 26 1 1 4 1 1 3 1 3 1 6 1 9 3 15 1 2 1 1 1 105 12 570 117 10 49 P ^Age001 TCCAACTTAC TAGTGCCCCG GTGCTGTGCT GTAAATATAT ATAXXXXXX ^Adi002 TCCAACTTAC TAGTGCCCCG GTGCTGTATC AAGGTCGCTG TXXCTTTCX ^Adi001 TCCAACTTAC TAGTGCCCCG GTGCTAGGCC AAGGTCGCTG GXXCTTGXX ^Aru127 TCCAACTTAC TAGTGGTTTA CCATAGTGCT GTAGTCGCGA GTXCTCTXX ^Aru001 TCCAACTTAC TAACCCCTTA CCATAGTGCT GTAGTCGCGA GTXXXXXXX ^Ama006 TCCAACTCGT CGGTGCCCCG GTATCGTGCT GTGAATGCAG GTXCTTTXX ^Smi165 TCCATTXTAC CCGCACTCTA CAGTAGGGTT ACAATCACTG GTXXXXXXX ^Aga001 TCCTACTTAT CAGTGCCCCG CTATCGTGCT GTGGACGCAG GTXCXTTXX ^Ama018 TCAAATTTGT CGGTGCCCCA GTATCGTGCT GTGAATGCAG GTXCTTTXX ^Aga002 TGCTACTTAT CAGTGCCCCG CTATCGTGCT GTGGACGCAG GTXCTTTXX 6583 2 5 22 126 1 3 3 11 9 4 1 4 1 1 3 1 41 14 1 1 2 1 7 2 28 2 2 1 30 11 1 1 1 1 1 4 42 1 2 1 3 3 58 3 1 1 24 12 10 27 P ^Age001 GTGACTTGTT GTCCCAAAAT TTTGGTC ^Adi002 GTGACTTGTT GTCCCTGGGC CCCATCX ^Adi001 GTGACTTGTT GTCCAAGGGC CCCATCX ^Aru127 GTGACTTGTT GCTACAAAAT TTTATCC ^Aru001 GTGACTTGTT ATTACAAAAT TCCATCX ^Ama006 GTGACCATXX GTCCCAAAAC XXXATCX ^Smi165 GTGGTTTGTC GTCCCAAAGT TTCGTGX ^Aga001 GTAATTTTTT GTCTCAAGAT TCCATCX ^Ama018 GCGACTAGTT GTCCCAAAAC TTTATCC ^Aga002 GTAACTTTTT GTCTCAAGAT TCCATCX 1437 2 3 43 1 4 4 1 41 2 1 2 3 1 2 1 2 2 1 1 1 1 3 1 8 1 78 10 58 P ^Age001 TCTATTCTCG CCGGTCCCGT TCTAGCTAGG ATGCGGGTAX XXXXXXXXXX XXXXXXXX ^Adi002 TCTATTCTCG CCGGTCCCGT TCTGATGGAT GCAAATAAXG GGCTGGCTGX XXXXXXXX ^Adi001 TCTATTCTCG CCGGTCCCGT TCCGATGGAT GCAAATAGXG GGCAXXXXXG XXXXXXXX ^Aru127 TCTATTCTCG CCGGTCCCAC CACAGCGGAT GCAAATCGXG GGATGGCCXX XXXXXXXX ^Aru001 TCTATTCTTA TTATGTAXGT CXTAATTAGG GCAAXXCTXG GXXTGGCCXX ACXXXXXX ^Ama006 TCTATTCCCG CCGGTTTCGT TCTAGCGGAT ACAAATAGXG GGTTGGCTXX AXAGXXXX ^Smi165 TCTATCGTCG CTAACTGCGT TCTAGCTGAA GTATGAGGXG XXXXXXXXXX XXXXAXXX ^Aga001 TCTAGTTTCG CCGGTTCCGC TCTAGTTAAT GCAAATATXG GGATGXXXXX XXXXXAXX ^Ama018 TCCXTTCTCA XCATXTACGT TCTAACGGGT GCAAATAGXG GGCTGGCTXX XXXXXXAX ^Aga002 TTTAGTTTCG CCGGTTCCGC TCTAGTGGAT GCAAATAGXG GGATGGTCXX AXAXXXXX 1460 1 8 8 5 31 1 2 9 58 3 1 11 2 1 1 1 11 3 1 2 1 1 7 1 1 1 2 1 1 1 11 24 1 12 1 1 1 13 13 27 17 1 3 6 31 1 1 6 3 7 126 5 3 6 6 12 54 10 27 P ^Age001 AGCATCTGAA TGCCTTTTGT GAAACXX ^Adi002 AGCATCTGAA TGCCTTTTGC AGXXXXX ^Adi001 AGCATCTGAA TGCCTTTTAC AGXXXXX ^Aru127 AGCATCTGAA CXXXXXXXGT AGAXXXX ^Aru001 AGCATCTGAG CGCCTTTTGT AGAXXXX ^Ama006 AGCATCGAXA TGCXXXXXGT AGAXXXX ^Smi165 AGCATTTGAA TGTCTTCCGT GGAATGX ^Aga001 AGCCCCTAAA TGCCCXTXGT AGAXXXX ^Ama018 AGGATCGAXA TGCXXXXXGT AGAXXXX ^Aga002 ACCACCTAAA TGCCCXTXGT AGAXXXX 1387 3 1 3 4 17 4 1 6 2 4 5 1 16 1 2 1 1 1 1 2 7 6 76 2 162 159 10 34 P ^Age001 GATTCTAGAA TCGATGTTTG GCATCTTGGG TCXX ^Adi002 GATTCTAGAA TCGATGTTTG GCATAGCTTA GAAX ^Adi001 GATTCTAGAA TCGATGTTTG GGGCCTCTTA GTAX ^Aru127 GATTCTAGAA TCGATGTGCA TCGCCGTTTA GAAX ^Aru001 GATTCTAGAA TTAGGAGTCA TCACCGTGTA GAAX ^Ama006 GATTCTAGCG CCAGGACTTA TCACCGTGTA GAAX ^Smi165 GATTCCGTAA TCGATATTTG TCACCGTTGA GAAX ^Aga001 GATGTTAGAA CCGGAACTTA TCGCCTTGTG GCAX ^Ama018 GAATCTATAG CCAGGACTTA TCACCGTGTA GAAX ^Aga002 GGTTTTCGAA CCGGAACTTA TCACCGTGTA GAAX 1419 1 2 2 3 34 1 1 1 4 3 3 2 5 1 1 1 9 2 5 6 10 1 1 4 8 1 1 1 2 12 1 3 12 10 25 P ^Age001 GAATATCTAC TCCACGAGTT AGTTX ^Adi002 GAATATCTAC TCCACGGACC GCAXX ^Adi001 GAATATCTAC TCCACGGACC GCAXX ^Aru127 GAATATCTAC TCGGGAAGCC GCAXX ^Aru001 GAATATCTAC TGCGGAAGTC GCAXX ^Ama006 GAATATCCCT GCCACAAGCT GCGXX ^Smi165 GAAGGGXTAT XCCAXAACXT GXXXX ^Aga001 GAGTAGCTCT TCCACAAGCT GCGXX ^Ama018 GCATGGCTCT GCCACAAGCT GCGXX ^Aga002 GAGTAGCTCT TCCACAAGCT GCGXX 785 3 2 12 1 1 174 1 3 8 3 2 1 1 1 1 1 1 1 2 6 6 1 3 24 10 68 P ^Age001 GATTACGGAT CCCCATATTC TTTAGCGTCC TTCTCTTTTC CAATATGCTC GCTGTAXXXX XXXXXXXX ^Adi002 GATTACGGAT CCCCATATTC TTTAGCGTCC CCTCACCCCT TGTCGAAACA TXXXXXGTAG TACGGXXX ^Adi001 GATTACGGAT CCCCATATTC TTTAGCACTT TTTCACCCCT TGTCGAAACA TXXXXXGTAG TACGAXXX ^Aru127 GATTACGGAT CCCCACGCCA CACCXXGTCC TTCTCTTTTC CATCGAAACT XCAXXXGTAG GGAXAXXX ^Aru001 GATTACGGAT CCCAGTATTC CACCGCGTCA TTCTCTTCCT TGTCGAAAGA TXXXXXGTAA TGAGAXXX ^Ama006 GATTACGGAT GTTCATATCA TTCCXXGTTC TTCTCTCTTT TGTCGAAACT XCAXXXGTTA TAAXAAXX ^Smi165 GATTATCATX CCTCXTAXTA TTTCGXGCCT TXCTCGTTCC TXATGACXXT XCAGCXXXXX XXXXXXGX ^Aga001 GATCGCCAGT CCCCATTTCC TGCCXCGTCC TTCTTTTCCT TGACAAAACA TXXXXXGAAA TAAXAXXX ^Ama018 GACTACGGAT CTCCATATTA TTCCGXGTCC TTCGCTCTTC TGTCGAAACT XCAXXXGTTA TAAGAXXX ^Aga002 GCTTGCGAGT CCCCATTTCC TGCCGCGTCC TTCTTTTCCT TGTCGAAACA TXXXXXGAAA TAAGAXXX 4580 4 7 5 8 143 6 2 2 111 5 1 1 1 1 2 1 2 12 11 8 1 1 1 2 3 1 1 1 1 2 1 9 1 1 1 1 14 1 1 2 1 5 4 2 39 3 92 1 9 2 2 3 575 22 683 482 1 1 1 7 2 3 1 1 1089 741 2622 10 28 P ^Age001 GTCCAAGCAG CTGACAGGGT AAAATTAT ^Adi002 GTCCAAGCAG CTGACAGAAC GGGTCCGA ^Adi001 GTCCAAGCAG CTGACAAGAC GGGTCCGA ^Aru127 GTCCAAGCAG CTAGTGGGGT AAATCCGC ^Aru001 GTCCAAGCAG CCGATTGGGT AACTCCGC ^Ama006 GTCCAAGTGC TTGACAGGGT GTAACCGT ^Smi165 GTCCGGACAG TTGGCAGGGC GAATCCTC ^Aga001 GTTXAAACAC CTGACAGGGT GAAATCGT ^Ama018 GCCCACGCGC CTGACAGGGT GTAACCGT ^Aga002 GTTXAAACAC CTGACAGGGT GAAATCGT 2416 5 3 3 53 1 1 7 2 1 1 6 10 1 3 1 4 3 14 1 1 1 1 5 1 15 1 1 10 31 P ^Age001 CAACAAGGCA GCCACGAGTC GAACTGGTTA T ^Adi002 CAACAAGGCA GCCACGAGTC GATTCACCCT A ^Adi001 CAACAAGGCA GCCACGAGTC GGACCACCCT A ^Aru127 CAACAAGGCA GCCATCGTCT XAACTGGCCT C ^Aru001 CAACAAGGCA GCCCCGGTCT GAACTGGCCT C ^Ama006 CAACAAGGGC ATTACTAGCT XAACTGGTCT C ^Smi165 CAACAGATCA GTTACGAATT GAACTATCTT C ^Aga001 CAATTAGGCA ACCACTAGCT GAATTGGCCT C ^Ama018 CACCAAGTCC ACTACTAGCT XAACTGGTCT C ^Aga002 CGACTAAACA GCCACGAGCT GAATTGGCCT C 1496 2 2 5 2 45 1 1 2 4 1 1 1 3 1 1 1 1 3 1 6 3 2 1 12 1 1 1 1 11 1 10 23 P ^Age001 GCAGTACTAA CGCTGTGAGA TXX ^Adi002 GCAGTACTAA CGCTGCAGAC XXX ^Adi001 GCAGTACTAA CGACXCAGAC XXX ^Aru127 GCAGTATAXX XXCTXTGGAC XXX ^Aru001 GCAGTATAAA CACTXTGGAC XXX ^Ama006 GCAGTGCTAA CGCTXTGAAC XXX ^Smi165 GCAGGACCAA TGCAGTAAGC TAX ^Aga001 GCAATACTAG CGCTGTGGAC XXX ^Ama018 GCGGTGCTAA CGCTXTGGAC XXX ^Aga002 GTAATACTAG CGCTGTGAAC XXX 1253 2 1 1 30 3 2 1 37 1 3 1 3 1 3 4 1 1 4 7 3 18 102 10 45 P ^Age001 ACCAACCGAC AGTCGGTCGT CCCCCACGTA GAATTCCGAT CTGXX ^Adi002 ACCAACCGAC AGTCGGTCGT CCCATGGACG AGCCCGGACA ACXXX ^Adi001 ACCAACCGAC AGTCGGTCGT CCACTGGACG AGCCCGGACA AAXXX ^Aru127 ACCAACCGAC AGTCGGTGAC GACCCACGTA GACCCGGACA TCXXX ^Aru001 ACCAACCGAC GAGAAXXCGT GACCCACGCG AGCCCGGACA ACXXX ^Ama006 ACCAACCGAA AGTCGGTCAC CACCCACATA GAACCGGACA TCXXX ^Smi165 ACCAACCGTC AGTAAGGCGT CTCCCGAATA AGCTCGGTTC CTGCX ^Aga001 ACCAAAAAAC AGCCAGTCGT CCCCCACGTG GGCTTGAGCC CTGXX ^Ama018 ACATCCCGAA AGTCGGTCAA CACCCACATT GAACCGGACA TCXXX ^Aga002 ATCTGCATAC AACCAGTCGA CCCCCACGTA GACTTGAGCC CTGXX 980 7 8 4 2 4 9 1 26 6 1 1 1 5 1 1 2 2 1 1 5 1 1 3 4 1 1 1 4 1 2 1 2 33 6 9 1 2 1 2 1 1 6 6 1123 10 45 P ^Age001 AGAACAACGG CTGCAGATGG CACXXXXXXX XXXXXXXXXX XXXXX ^Adi002 AGAACAACGG CTGCAAGCAA TGTAGACGGC AAGCTACCCA CTCTX ^Adi001 AGAACAACGG CTGCAGGCAA TGTAGACGGC AAGCTACCCC AAGAX ^Aru127 AGAACAACGG CCATGGATGA TGTAGACGGC AAGCTGTTTA CAGAX ^Aru001 AGAACAACGA TTGTGGATGG CGTAGACGGC AAATCACCTA CAGAX ^Ama006 AGAACGGGCG CTGCAGATAG CGTAGACGAT TGGTCACTTA CAGGX ^Smi165 AGATTAACCG TTCCAGACAG TATAGATCGC TGGCTACCTA CAGGX ^Aga001 ATGATAATGG CTGCGGATGG CATAGACGGC AAGCCATCTA CAGAX ^Ama018 AGAACAGGGG CTGCAGATAG CGTAGTCAGT AGGTCACTTA CTGAX ^Aga002 AGGATAATGG CTGCGGATGG CATATACGGC AAGCCATCTA AAGAX 1366 1 6 29 1 2 8 1 1 3 1 3 1 7 2 2 7 1 1 1 1 1 12 477 1 3 23 2 1 6 5 1 3 1 1 4 1 1 4 1 6 1 3 1 178 10 44 P ^Age001 CATTATAGTG AGTCGCGCCG ATGTGCACTT XXXXXXXXXX XXXX ^Adi002 CATTATAGTG AGTCGCGCTC CCAGATTAAX CGAGCAACGA XXXX ^Adi001 CATTATAGTG AGTCGTAGCC CCAGATTAAX CGAGCAACGG XXXX ^Aru127 CATTATAGTG AGTTACGTCG ATAGATTAAX CGAGCGGTAG XXXX ^Aru001 CATTATAGTG AGCCACGCCG ATAGATTAAX CGAGCGGTAG XXXX ^Ama006 CATTGCGACC TXTCGCGCCG CXGTATTGXX CGAGGAGTAG AACX ^Smi165 CATCATAGCA GXTCGCACTG CXGTGTTGXX CGGACAATAG AGTX ^Aga001 CAGTATGACG AXTCGCGCCG CXGTATTGXX CGAACAGTCG AATX ^Ama018 CGTTACAATG TGTCGCGCCG CTGGATCAAX CAAGCAGTAG XXXX ^Aga002 CAGTATGACG AXTCGCGCCG CXGTATTGXX CGAACAGTCG AATX 783 3 2 34 2 2 1 1 23 1 1 15 3 1 1 1 1 1 1 2 1 2 1 15 1 16 1 10 13 150 232 1 4 1 1 1 1 2 1 2 94 1 1 3 10 49 P ^Age001 GCACTCGCGC ACTGACTGAA CCAAAAATAT GAAAAACATG GTAGTXXXX ^Adi002 GCACTCGCGC ACTGACTGAA CCAAAAATAT AGGCGGTGGA ACXXXTXXX ^Adi001 GCACTCGCGC ACTGACTGAA CCAAAAATAC GGGCGGTGGA ACXXXTXXX ^Aru127 GCACTCGCGC ACTGACGTGG TTCXXXXXXT GAAAGGTGGA XXAXXXXXX ^Aru001 GCACTCGCGC ACTGGTTTGG TTCAAAAGXT GAAAGGTGGA AXAGXXTXX ^Ama006 GCACTCGCGC GTCTACTGGG TTCAAAGTXT GAAAGGTGGA AXAXXXXXX ^Smi165 GCACTTAGAX ACCAAATGAA CTCAAGATXT AAGGAGTGCX ATAXTXXAX ^Aga001 GCATCCGGTC ACTGACTGAG TCCAGAATXT GAAAGATTGA AXAXXXXXX ^Ama018 GCGCTCGCGC ATTTACTGGG TTCAAAGTXT GAAAGGTGGA AXAXXXXXX ^Aga002 GTACCCAGTC ACTGACTGAA TCCAGAATXT GAAAGATTGA AXAXXXXXX 4534 4 6 6 10 191 1 2 1 2 1 6 1 1 4 2 3 3 6 1 2 1 2 197 2 10 2 1 1 4 1 15 3 1 12 1 38 1 2 1 1 1 3 12 1 1 3 259 1175 10 40 P ^Age001 CTCCATTCAG CTGTGGCCAG TGCXXXXXXX XXXXXXXXXX ^Adi002 CTCCATTCAG CTGTGGATGA CAGTCCACTX XXXXXXXXXX ^Adi001 CTCCATTCAG CTGTGTCTGA CAGXXXXXXX XXXXXXXXXX ^Aru127 CTCCATTCAG CCAATGCCAA CAGTCCCXXX XXXXXXXXXX ^Aru001 CTCCATTTTA TCAATGCCAA CAAXXXXXXX XXXXXXXXXX ^Ama006 CTCCACXCAA TTAGXGCCAG CAGTCCCCTA GGCTTXXXXX ^Smi165 CTCTXTTCGG TTTAAGCCGT TAGTCGTCAA ATAXXTATXX ^Aga001 CTTCATTCAA ATAAGGCCAG CAGTCCCXXX XXXXXXXXXX ^Ama018 CCCCACXCAA TTAGXGCCAG CAGTTCCCTA GTTTCTTXCX ^Aga002 CTTCATTCAA CTAAGGCCAG CAGTCCCXXX XXXXXXXXXX 1010 1 1 42 1 1 17 3 1 1 1 5 1 1 1 4 1 2 1 1 2 5 1 85 1 87 1 1 2 156 138 1 1 282 4 6 6 344 9 182 10 52 P ^Age001 GGAATGCGTA CAGGACTCCT GTTAGATGAG CTGTATGCAC TCAAGTCTCA XX ^Adi002 GGAATGCGTA CAGGACTCCT GTTGAGCACT TCAGCAAXXX XXXXXXXXXX TX ^Adi001 GGAATGCGTA CAGGACTCCT GTCAGACACT TCAGCATXXX XXXXXXXXXX TX ^Aru127 GGAATGCGTA CAGGACCTGC CATAGGTGAG TCAGTGGCAC TCAGAAGGTX TX ^Aru001 GGAATGCGTA CAGGGTTTGC CATAGGTGAA TCAGTGGCAX XXXGXXXXXX TX ^Ama006 GGAATGCGTA TGCAACTCCT CATAGATGAG CCAGCGGCAC TCGGGAGGTX TX ^Smi165 GGAATTTACG CAGAATTCGA GCTACTTGGA CTAACGGCGC CXAGGTGGAX TX ^Aga001 GGAGCGCAGT CACGACTCCT CATAGATAAG CCAGCGGCAX XXXGXXXXXX TX ^Ama018 GGTATGCGTA CGCAACTCCT CATAGATGAG CCAGCGGCAC TCGGGAGATX TX ^Aga002 GTAACGTATT CACGACTCCT CATAGATAAG CCAGCGGCAX XXXGXXXXXX TX 4244 2 1 1 18 186 1 3 1 1 4 10 3 1 7 1 6 20 1 1 2 1 5 9 1 1 25 1 1 1 1 5 55 6 1 1 1 12 2 431 7 3 2 1 1 5 24 1 3 9 3 195 10 87 P ^Age001 ATATACAATA AACACAGACG GCCCGTCCTC CCTCCCGGGT TGATAGTAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Adi002 ATATACAATA AACACAGACG GCTTACTAGT TTCTTTATTX XXXXXXXXAT CCATTTAAAC CCATGCATAG TTTCATCCTT XXXXXXX ^Adi001 ATATACAATA AACACAGACG GTCTACTAGT TTCTTTATTT AXXXXXXXAT CCATTTAAAC CCATGCATAG TTTCGCAGXX XXXXXXX ^Aru127 ATATACAATA AACACAGATA XCCCGTCCGT TTCTTTATCT AGAAXXXXAT CCATTTAAAC CCACCACCCA GXXXACAGXX XXXXXXX ^Aru001 ATATACAATA AACACAGATA GCCCGTCCGT TTCTTTATCT AGTAXXXXAT CCATTTAAAC CCXTGACCCA GXXXACAGXX XXXXXXX ^Ama006 ATATACAATA AACACGTCCG GCCCGTCCGT TTCTTTATCT AGATAAXXAT CCATTTAAAC CTATGCATCA GTTXACAGTX TATTTXX ^Smi165 ATATACAATA ACTXXAGCCG GCCCGTTTTC CCCTTTTXGT AGATXATCAT CCATTCGGXX XXATXCAXCX XTCXXCGXTX TACXXCX ^Aga001 ATATGGCXXX XATAGAGACA GCCCACCCTT TGTTTGATCT AXXXXXXXAT TAGCXTGTAT XCXTGCCTCA AXXXAAAGTT TXXXXXX ^Ama018 ATGXACXATA XACACATACG GCCCGXCCGT GTCTXXATCX XGATXXXXAA CCCAGTAAAC CTATGCATCA GTTXACAGTX TXXTXXX ^Aga002 ACATAGAAAX AACAGAGACA GCCCATCCTT TGTTTTATCT ATATXXXXAT CAACTTAAAT XCXTGCCTCA AXXXACAGTT TXXXXXX 974 2 1 2 1 2 1 3 1 1 1 27 1 100 1 1 3 1 4 1 1 1 1 5 1 2 2 2 1 72 1 1 2 9 2 2 5 1 1 1 1 1 1 1 1 2 60 6 102 4 3 1 1 1 1 7 1 2 282 4 3 1 1 1 1 1 1 2 2 6 1 4 1 3 1 1 1 1 2 9 2 1 1 2 1 21 3 10 45 P ^Age001 ACAGAGCCCC CGTAAGGTTC GGGCGTGCAC CCCGAGACGT CCTXX ^Adi002 ACAGAGCCCC CGTAAGGTTC GGGCGCATCT TTGAGAGTCX XXXXX ^Adi001 ACAGAGCCCC CGTAAGGTTC GGGTTTATCT TTGAGAGTCX XXXXX ^Aru127 ACAGAGCCCC CGTAAGGTCA CAACGTGCAC CCCGAAGTCT TAXXX ^Aru001 ACAGAGCCCC CGTAAGGATA CAACGTGCAC CCCGAAGTCX XXXXX ^Ama006 ACAGAGCCCT AACCGACTTC GGACCTGCAC TTGATGGTCT TAXXX ^Smi165 ACAGATTTTC CGTAGAATTC GCACGTGCAT CTGAAAATTT CATXX ^Aga001 ACAAGGCTGC CGTCAGGTTC CGACGTGTCC CCCAAGGTCT TATXX ^Ama018 ACGGAGCCCC CACCGACTTC GGACCTGCAC TTGATGGTCT TAXGX ^Aga002 ATAGGGTCCC AGCCAACTTC GGACGTGCCC CTTAAGGTTT TATXX 3882 2 7 10 5 113 1 1 1 3 1 3 10 1 1 2 1 2 1 6 1 1 2 10 1 12 16 1 1 2 1 5 1 8 1 1 2 20 1 4 1 1 3 3 549 10 92 P ^Age001 GTCTCACAAA ACGAGGTTTA GTCGTTATTG GGAGTTGGAA GGTGTGTACG CCATTGAACG CGTAATAGAX XXXXXXXXXX XXXXXXXXXX XX ^Adi002 GTCTCACAAA ACGAGGTTTA GTCGTTATTG GGAGAGAAGG AACAACGTGA ATGGAATCTA AXXXXXXXXA CTAAGTACGG TTTXXXXXXX XX ^Adi001 GTCTCACAAA ACGAGGTTTA GTCGTTATTA AACCTTGGAG AACAACGTGA ATGGAATGAT GGTGTAXXXA CTAAGTTACA AAAAAGGXXX XX ^Aru127 GTCTCACAAA ACGAGGTTTG TCGTCCGCXG GGTXTTGGXA GGTGTCGTGA ATGGCXXATX XGTATAXXXA CTAATXACGA GGXAAAXAXX XX ^Aru001 GTCTCACAAA ACGAGGTTCA GCGTCCGCTG GGAGTTGGAA GGTGTGTACA ATGATGAACG CGTAATAGXA XXXXXXXXXX XXXXXXXXXX XX ^Ama006 GTCTCACAAA ACCTATGACA GTCGTCGCTG GGAGTTGGAA GGTGGGTAAG ATCGTGTACG GGTATAXXXA CTXXXXACGG XXXXXXXXTX XX ^Smi165 GTCTCATGGG GXGAGGGCCA GTCTATGATG GAAGTTGAAA GAAXGGTGAA AGGTTGAACG GGTAATXXXA CCAXGXAAAA TAXXXXXXXX XX ^Aga001 GTCATXCAAA GCGAGTTTTA XTGGTCGCXG XGXXTTXGXA XGTGTCXTAA ATGGXXXXXX XGTATAXXXA CTXXXXACGG XXXAXXXXXX XX ^Ama018 GTTTCACAAC ACGTATGACA GTCGTCGCTG GGAGTTGGAA GGTGGGTAAA ATCGTGTACG GGCAAAXXXA CTXXXXACGG XXXXXXXXXC XX ^Aga002 GACTTACGTA GCGAATTTCA GTGGTCGCTG GGAGTGGAAA GGTGTGTACA ATGGTGAACG CGTAATAXXA CTXXXXACGG XXXXXXXXXX CX 3047 32 1 1 5 6 97 7 1 1 1 8 4 9 1 1 2 1 1 2 3 10 1 1 1 4 2 1 1 9 1 1 1 2 6 3 1 6 2 5 3 3 1 1 1 4 1 1 1 1 48 3 1 1 3 2 1 1 1 1 1 19 1 1 2 2 12 33 17 17 119 1 3 18 3 6 13 5 2 1 1 2 1 31 751 29 4 18 21 1317 3 32 10 50 P ^Age001 GTACGAGTTT GGGCACAAAC TCAAXXXXXX XXXXXXXXXX XXXXXXXXXX ^Adi002 GTACGAGTTT GGGCACGGTT CTTXGTAGCC TCCATCACAA GTGGTCAGXX ^Adi001 GTACGAGTTT GGGCACGGTT CTTXGTAGCC TCCATCACAA GTGGTCAGXX ^Aru127 GTACGAGTTT GGATGTAAAT CTTXGTAGCC TCCATCAAGG ACCTAGCXTX ^Aru001 GTACGAGTTT GGGTGTAAAT CTTXGTAGCC TTACXXXCGG ACCTXXXGXX ^Ama006 GTACGAGCCC CAGCACAAAC CTTXGTAGCC GCCATCACAA GCCATCCXTX ^Smi165 GTATCXXTTT GAGCATAGGC CTTXGTAGTT TCATTTXCAA GTCGTXXGXX ^Aga001 GTGCTAATTT CGGCACAGAC CTCXGTAACC TTACXXXCAA ACCGXXXGXX ^Ama018 GTACGAGTCC CAGCACAAAC TTTXGTGGCC GCCATCACAA GCCATCCXTX ^Aga002 GCACGAGTTC CGGCGTAAAC CTTXGCAGCT TCCATCACAG GCCGTCCGXX 1128 3 4 32 1 8 1 1 3 1 1 1 3 4 2 1 6 1 1 1 1 46 1 714 804 6 1 4 23 1 2 2 11 1 1 7 43 2 1 1 1 1 8 1 1 1 1 3 15 157 10 26 P ^Age001 TAACATAGTA CCCTTGTGTG CCXXXX ^Adi002 TAACATAGTA CCCTCACXXX XXACXX ^Adi001 TAACATAGTA CCTCTACXXX XXXXGX ^Aru127 TAACATAGTA TTCCTGCXXX XXXXXX ^Aru001 TAACATAGTC CCCTTGCGTG CXXXXX ^Ama006 TAACATATAA CCCTTGCXXX XXXXXX ^Smi165 TAACTAXGGA CTCTTGCGTA TXXXGX ^Aga001 TAGTATAGTA CCCTTGCGCG ACXXXX ^Ama018 TAACAAATAA CCCTTGCXXX XXXXXX ^Aga002 TGATATAGTA CCCTTGCGCG AXATXX 1313 1 1 4 42 1 3 6 1 6 8 1 4 1 5 3 7 9 1 1 1 12 11 1 3 111 10 18 P ^Age001 TGGAGGAGTC TCTCTXXX ^Adi002 TGGAGGAGTC ATCTGXXX ^Adi001 TGGAGGAGTC TTCTGXXX ^Aru127 TGGAGGAGGT TCTTGAAX ^Aru001 TGGAGGAATC TCTTGXXX ^Ama006 TGGAGTCGTT TCTTGACX ^Smi165 TGGGAGAGTT TCCCGXXX ^Aga001 TAAAGGCGTC TCTTGXXX ^Ama018 TGGAAGCGTC TCTTGACX ^Aga002 TGAAGGCGTC TCTTGXXX 722 1 1 18 1 1 2 4 3 1 2 1 1 1 6 191 1 3 10 19 P ^Age001 AGTCAATTCT TCGGCTAGC ^Adi002 AGTCAATTCT TCGATCTXX ^Adi001 AGTCAATTCT TCGATCTXX ^Aru127 AGTCAATCTA CTCGTCTXX ^Aru001 AGTCAAATTA CTCGTCTXX ^Ama006 AGTCGTTTCA CTCGCCTXX ^Smi165 AGTTAATTCT TTTTTCGGT ^Aga001 ATGCAATTCT CTGGTCTXX ^Ama018 AGTCATTTCA CTCGCCTXX ^Aga002 AGGCAATTCT CTGGTCTXX 1453 1 5 36 1 3 5 2 1 3 1 1 1 1 1 8 1 5 1 10 23 P ^Age001 CCGTAGGCTG AAATCAAACC ATA ^Adi002 CCGTAGGCTG AAATCAAGTA GCG ^Adi001 CCGTAGGCTG AAATCAGGTA GCG ^Aru127 CCGTAGGCTG ATTCTCAACA GCG ^Aru001 CCGTAGGCTG AATCTCAACA GCG ^Ama006 CCGTAGGCTA GAATCAAATA GCG ^Smi165 CCGTGAXXXG XAATXXAGCA CXX ^Aga001 CCGCAAGCCG AAATCAAACA GTG ^Ama018 CCATAGGTTG AAACCCAACA GCG ^Aga002 CTGCAAGCCG AAATCAAACA GTG 664 1 3 2 16 2 154 1 1 2 2 2 1 2 1 1 1 1 1 3 1 1 1 10 31 P ^Age001 CTCAACGCCT AAGCTTAGGA GTTGGGXXXX X ^Adi002 CTCAACGCCT AAGCTTAGGG CCCAAXCAAG A ^Adi001 CTCAACGCCT AAGCTTAXXG CCCAAXCAAG A ^Aru127 CTCAACGCCT GTAXXXXGGA GTTAAXCAAG C ^Aru001 CTCAACGCCC ATAXXXXGGA GTTAAXCAAC C ^Ama006 CTCAACCTTT AAACTTTGGA GTTAAXCAAG C ^Smi165 CTCGGGGCTT AAACAAAGAA GCCAAXCGGG C ^Aga001 CTGAAGGCCT AAGCTAAGGA TTCGAXCAGG C ^Ama018 CTCAGCGTTT AAACTTTGGA GTTAAXCAAG C ^Aga002 CAGAAGGCCT AAGCTAAGGA TTCGAXCAGG C 1440 1 5 27 1 1 2 2 1 2 5 3 1 12 3 1 2 2 1 2 1 1 1 2 14 81 174 9 1 1 1 10 30 P ^Age001 TTTGTTGGTT CTGTTAAGAA TGAACGCTGX ^Adi002 TTTGTTGGTT CTGTTAAGAA CACTTCTAAT ^Adi001 TTTGTTGGTT CTGTTAAGAC TACTTCTATT ^Aru127 TTTGTTGGTT CTAACGGAGA TGAATCAGTT ^Aru001 TTTGTTGGTT CTGACGGAGA TGAATCAGTT ^Ama006 TTTGTTGGTC TCGTTAGACA TGAACCCATT ^Smi165 TTTGTTAAAT CTGTTGAAAG TGAGCCCATT ^Aga001 TTTTGXGAGT CCGTCAAGAA TGGACCCATT ^Ama018 TTCGTTGGTT TCGTTAGACA TGAACCCATT ^Aga002 TGTGGXGAGT CCGTCAAGAA TGAACCCATT 1653 3 4 2 10 6 40 3 1 4 6 1 1 4 1 1 1 1 1 1 3 10 1 1 1 16 1 1 1 3 10 28 P ^Age001 TGTGCATGAA TGGCTCCAAG CAAATXXX ^Adi002 TGTGCATGAA TGGCTCTGGA TGGGCTXX ^Adi001 TGTGCATGAA TGGCTTCGGA TGGGCTXX ^Aru127 TGTGCATGAA TTATATCAAG TGGGCTAX ^Aru001 TGTGCATGAA CGGTATGAAG TGGGCTXX ^Ama006 TGTGCATAGT TGGCTCCAAG CGGGGTXX ^Smi165 TGTGCTCGAC TGACCTTAGT TAAGCTXX ^Aga001 TGTTTAGGAA TGGCTCTAAG CGGGCTXX ^Ama018 TGGGCATGGA TGGCTCCAAG CGGGCTXX ^Aga002 TATGTAGGAA TGGCTCCAAG CAGGCTXX 1474 9 3 3 2 42 1 1 5 1 4 1 1 6 1 1 1 8 1 1 1 1 1 11 1 3 3 19 10 29 P ^Age001 GAACTTGCAC GCATTAGGCT CGGXXXXXX ^Adi002 GAACTTGCAC GCATTAAATC AAATCGCGC ^Adi001 GAACTTGCAC GCATTGGGTC AAAXXXXXX ^Aru127 GAACTTGCAC GCGCAAGGCT AAATCGCAA ^Aru001 GAACTTGCAC GGACAAGGCT CAAXXXXXX ^Ama006 GAACTTGCAT ACGTAAGGCT CAATCTTGA ^Smi165 GAACCCTTTC GCATTAGACC AGATTGTGA ^Aga001 GAAATTGTGC ACGTAAGACT CAATCGCGA ^Ama018 GACCTTCCAT ACGTAAGGCT CAATCGTGA ^Aga002 GCACTCGCAC ACGTAAGGCT CAAXXXXXX 1014 2 1 6 36 1 1 1 1 4 1 2 1 3 1 2 3 1 3 1 1 1 5 94 2 2 2 1 1 10 32 P ^Age001 TGTCAAGATC CTGTAAATGG ATCAGGGACC GX ^Adi002 TGTCAAGATC CTGTAAATGG TCAGATAGTT XT ^Adi001 TGTCAAGATC CTGTAAATGG ACAGATAGTT XT ^Aru127 TGTCAAGATC CTGTCCGCAA ATCAGGAGTT XT ^Aru001 TGTCAAGATC CCACACGCAA ATCAGGAGTT XT ^Ama006 TGTCAAGGCT TTGTAAGCAT ATCAGGAGTT XT ^Smi165 TGTCACAATT TTGTAAATAA ATCAAAGGTG XT ^Aga001 TGTTCATATC TTGCAAATAG ATCGGGGGTT XT ^Ama018 TGCCAAGACT TTGTAAACAT ATCAGGGGTT XT ^Aga002 TTTCCAGATC CTACAAATAG ATTGGGGGGT XT 1566 3 1 5 8 58 1 4 3 2 1 6 1 1 6 4 1 4 1 1 3 8 1 2 1 1 1 11 1 1 3 3 10 67 P ^Age001 AGTAGGATAA ACGTGACAAT ATATTGTCTC CGAGAAGAGG CCTCTAGTGG GAAGGXXXXX XXXXXXX ^Adi002 AGTAGGATAA ACGTGACAAT ATATTACTGT GAGAGGXXXX XXXXXXXXXX XXXXXGXXXX XXXXXXX ^Adi001 AGTAGGATAA ACGTCGXXXX XXXXXGCTGT GXXXXXXXXX XXXXXXXXXX XXXXXGXXXX XXXXXXX ^Aru127 AGTAGGATAA ACACGGCAAT AGTCAGTCTT GGAGGTGAGG CCTCTAGCAC ACGACGCCGC CGGGXXX ^Aru001 AGTAGGATAA CGACGGCAAT ATACAGTCCT GGACGTGAGG CCTCTACTGC ACGACGCXXX XXXXXXX ^Ama006 AGTAGCTCGC ATGCGGCAAT GTACAGTCTC GGAGGTGAGG CCATCXGTCG GCGACGCCGC CGAXTXX ^Smi165 AGTTCGATGG ACGCGGCAGX ATATXGTTTC GGCGGTGAGG GXTCGAGTGG AAGAAGCCAX XXXXXCX ^Aga001 AGGACGACGA ACGCGGCGAT ATACAGTCTC GGAGGTGAGC CCTTTAGTGG ACGACGCXXX XXXXXXX ^Ama018 AGTAGGTCGA ACGCGGCAAT GTGCAGTCTC GGAGGTGACG CCTTTAGTTG ACAACGCCGC GXXXXXX ^Aga002 ATGAGGACGA ACGCGGCGAT ATACAGTCTC GGAGGTGGGC CCTTTAGTGG ACGACGCXXX XXXXXXX 254 1 1 15 1 8 1 1 1 1 2 1 1 2 3 1 101 1 1 2 1 1 1 2 1 5 61 3 1 1 4 83 1 1 1 1 923 1 9 7 48 3 23 2 4 2 4 3 1 7 1 4 1 23 2 6 3 7 5 125 1 17 1 123 5 3 15 10 27 P ^Age001 TTTCTGATAC CTTAATTCCT CXXXXXX ^Adi002 TTTCTGATAC CTTATGCTAG XTTTGXX ^Adi001 TTTCTGATAC CCXXTGCTAX XTTXXXX ^Aru127 TTTCTGATGG ATTAATCTAG XTTTGXX ^Aru001 TTTCTGACAG ATTAATTTAG XTTTGXX ^Ama006 TTTCTAGTAC CTTAATTCAG XTTTGTX ^Smi165 TTTCCGATAC CTTAACTCAG XTCTAXX ^Aga001 TTTGTGATAC CTTGATTCAT CTTXXXX ^Ama018 TTACTGGTAC TTTAATCCAG XTTTGXX ^Aga002 TCTGTGATAC CTTGATTCAT CTTXXXX 767 1 1 2 23 3 1 1 2 6 1 1 6 1 7 1 1 3 4 6 8 87 3 39 2 6 366 10 27 P ^Age001 AATTATCAAT CGTTCAAAGT GCTACTX ^Adi002 AATTATCAAT CGTTCAAAGT GCTATCX ^Adi001 AATTATCAAT CGTTCAAAGT GCCGTCX ^Aru127 AATTATCAAC TACCTGXXXX XXTACCX ^Aru001 AATTATCAAT TACCTGXXXX XXTGCCX ^Ama006 AATTTCTGGT CGCCTGAAAX XXTACCX ^Smi165 AATCATCGGT CGTCTTAAGT AXTACCX ^Aga001 AACTATTAAT CGTTTAAAGT GCTACCX ^Ama018 AATTACTAGT CACCTGXXXX XXTACCX ^Aga002 AGTTGTCAAT CGTTTAAGGT GCTACCX 797 1 3 24 1 1 1 1 1 1 1 1 15 4 2 1 23 1 3 10 2 3 3 1 1 4 6 10 105 P ^Age001 GTCTAGATTG ATTACGCATA TTTAGCCTTT TTTGTTAAAC TAGAATATGG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 GTCTAGATTG ATTACGCATA TTTGCTTCAC GCCTCCGXXX XXXXXXXXXX CGCGTGTACG GGACACTCTX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi001 GTCTAGATCA XXXXXXXXXX XXXACTTCAX XXXXXXXAAT XXXXXXXXXX CATXXXXXXX XXXXXXXXXA AATAGATCGA XXXXXXXXXX XXXXXXXXXX XXXXX ^Aru127 GTCTAACCTA ATTACGCGCG XXXAGCCCAT GCCAXXXAAC XXXXXXXXXX CGTGTGTATA TCTATXXXXA AATAGACTTX ATCTAXXXXX XXXXXXXXXX XXXXX ^Aru001 GTCTAGCCTG ATTACTTATG TTAAGCCCAT GCCTTTGAAC TAGAACGCAX CGCGTGCXCG XXXXXCAXXX XXXXXXXXXX AXXXXCTCAA AAGGGXXXXX XXXXX ^Ama006 GTCTTGACTA ATTXXGCATA TGGAGCTCAT GCCTCGGAAC TCXXXTACCG CGCGTTTACG GGACTTTCCA AACXXXTTXX ATXXXCTACC GTXXXGTGAG GGXXX ^Smi165 GTCAAGATTA AXXXXXXAXX XXXAGTCTAX GXXTXXXAAC XXGTXXXXXX CGCGCGXXCA XXXXXXXXXA ACTACXTTXX XTCAXXXXXX XXXXXXXXXX XXAXX ^Aga001 GTGTAGACTG ATAATGTATA TTCAGCTCAT GCGTTTGACC TAXXXTGCAX CGCGTGAACG GGCTTCACCX XXXXXXXXXX AXXXXCTCAA GGGGAGTTTX XXXAX ^Ama018 GTCTTGACTA AXXXXXXAXX XXXAGCTCAX GXXTXXXAAC XXXXXXXXXX CGCGTTXACG GAACTXXCCA AACXXXTTXX XTXXXXXXXX XXXXXXXXXX XXXXX ^Aga002 GCCTAGACTA ATTXXGCATA XXXAGCTCAT GCCTXXXACC TCXXXTACCX CGCGTGTACG GGATTTTCCA CATXXXTTXX ATXXXCACCG GTGCAGXGXG AXXXX 996 3 1 36 4 1 3 1 3 2 7 94 11 4 1 3 1 2 1 1 45 66 1 2 3 5 1 1 9 3 5 1 1 1 1 1 1 4 1 1 9 1 11 6 7 1 2 1 1 1 7 6 2 75 1 2 1 81 4 2 40 1 1 1 1 1 2 24 1 100 1 3 1 14 12 88 1 1 1 249 4 1 14 10 165 183 3 1 21 1 33 1 5 2 1 45 53 1 40 5 3 45 2 188 1070 10 29 P ^Age001 AGCACTGATC CAAGGCTTCC GCCTCTTGX ^Adi002 AGCACTGATC CAAGGCTTGT AGTCGGGXX ^Adi001 AGCACTGATC CAAGGCCCCT AGTCGGGXX ^Aru127 AGCACTGATC CATACTTCCC GCTCGGGGX ^Aru001 AGCACTGATC GGAACTTCCC GCCCGGGGX ^Ama006 AGCACTGCAT CAAGGTTCCC GCCCGGGGX ^Smi165 AGCACCXATT CXAGXCTTCC ATTTGAXXX ^Aga001 AGCGGTXATC CXAGXTTCCC GCCCGGXXX ^Ama018 AGAACTGAAT CAAGGTTCCC GCCCGGGGX ^Aga002 ATCAGTXATC CXAGXTTCCC GCTCGGXXX 1567 3 1 4 3 67 118 1 3 1 6 1 4 2 2 2 4 1 1 9 1 1 1 1 28 2 2 24 3 10 23 P ^Age001 TTAGCTCTGA TCCTTCGGCC AXX ^Adi002 TTAGCTCTGA TTGCCTATGG XGC ^Adi001 TTAGCTCTGA CCGCCTATGG XGC ^Aru127 TTAGCTCTAG TCCTCTATTA XGC ^Aru001 TTAGCTCCGG TCCTCTATGA XGC ^Ama006 TTAGCAGTGA TCCTTTATCG XGC ^Smi165 TTACTTCTGA TTCCTCGTTG XGC ^Aga001 TTGGTTGTGA TCCTTCATGG XGT ^Ama018 TCAGCAGTGA TCCTTTATCG XGC ^Aga002 TTGGTTGTGA TCCTTCATGG XGT 1109 2 2 29 1 1 3 3 1 4 1 1 7 1 1 1 4 49 1 1 14 4 1 10 27 P ^Age001 AAGAAACGAC TCGCTATATT GTCXXXX ^Adi002 AAGAAACGAC ATATGTGCCA AGXATTC ^Adi001 AAGAAAXXXX ATATGTAXXX XXXAXXX ^Aru127 AAGAAGCGAG TCATGCGACA AGXATTG ^Aru001 AAGAGGXXXX TCATGCAXXX XXXAXXX ^Ama006 AAGGAACGAC TAATGCGACA AGXATGG ^Smi165 AAAAAACGAC TTGTACGATA AAXATGG ^Aga001 ACGAAACGTG TCATGCGACA AGXATGG ^Ama018 AAGGAACXXC TAATGCGXCA XXXAXXX ^Aga002 ACGAAAXXXX TCATGCAXXX XXXAXXX 691 2 12 1 1 3 29 16 1 1 3 1 3 120 1 1 1 1 1 29 18 2 127 51 16 1 5 10 28 P ^Age001 CCTCTCTCAC CCTGCGAGTC TTCCGTTX ^Adi002 CCTCTCTCAC CCTGCGGAAT CCTTTCAA ^Adi001 CCTCTCTCAC CCTGCAAGAT CCTTTCAA ^Aru127 CCTCTCTCAG TTCTTAAATC TCTTCACX ^Aru001 CCTCTCTCGC CCTGTAAGTT CCTTTCAA ^Ama006 CCTCTCCTAC CCTGCAAGTC CCTTGCAX ^Smi165 CCTCCTTCAC CCCACAAGTC CTTTGCGX ^Aga001 CCTGTTTCAC CCTGCGAGTC TTCTGCAA ^Ama018 CCCCTCTTAC TATGCGAGTC TTCTGCAX ^Aga002 CTTGTATCAC CCTGCGAGTC TTCTGCAA 1230 1 2 9 5 1 3 2 1 44 1 1 10 2 2 1 2 1 1 1 1 1 1 6 1 1 1 3 10 58 P ^Age001 TAGCCCGCTG GTAGCACTTT TTGGGCGCCT CCCCGCTGGA GCTTAGAAAA GTXXXXXX ^Adi002 TAGCCCGCTG GTAGCACTTT TTGGGCGCCT CATTATAAAC TTCCCCCGCT TXAGAACX ^Adi001 TAGCCCGCTG GTAGCACTTT TTGGGCGATC TCCTATAAAC TTCCCCCGCC CXAGAACX ^Aru127 TAGCCCGCTG GTAGCACCCC CGAACTCCCT TCCCGCTGAC TTCCCCTTGC CXAGAAXX ^Aru001 TAGCCCGCTG GTTATGTTTC CGAACTACTC TCCCGCTGGC TTCCCTCTGC CXAGGGCX ^Ama006 TAGCCCGTCA AXAATGTTTT TTGGCTACCT CCCCATATGA GCCCCTCGCC CXAGAGXX ^Smi165 TAGCCTACTA ATAGCGTTCT TTAAGTACCC ACCCGCAAGA GTTCGTCGTC CXAAAGCX ^Aga001 TAGTTCGCTG GTAGTATTCT TGGACTACCT CCTCGTAGAC TTCCCCAGCC CXAGAACX ^Ama018 TAACCCTCCG AXAATGTTTT CGGGCTACCT CCCCGTAGGA TTCCCTCGCA CXAGAGXX ^Aga002 TCGCTCGCTG GTAGCACTCT TGGACCGCCT CCTCGTAGAC TTCCCCCGCC CXAGAACX 2704 1 4 5 3 63 1 26 12 16 6 3 3 1 2 1 6 1 1 12 1 3 3 1 2 3 1 8 8 1 1 11 1 12 1 1 3 1 2 1 9 3 4 145 2 2 1 3 1 1 1 93 32 2 1 1 3 249 10 66 P ^Age001 GATTTCGTAA CGACAGGACT TGGACCACGT ACGCGGAAAT ATAGACCCAT CAGTAGCTAC TXXXXX ^Adi002 GATTTCGTAA CGACAGGACT TGGACCACGT AGTTAAGXXX XXXXXXXXXX XXXXXXXXXX XGAAXX ^Adi001 GATTTCGTAA CGACAGGACT TGGACCCTAC GCGCAAGAAT ATAGACCCAT CAGTAATCGT CGAXXX ^Aru127 GATTTCGTAA CGACAAATTC CACGAXACAC GCGCGAGAAT ATAGACCCAC TGTCXGCCGT CGTXXX ^Aru001 GATTTCGTAA CGAACGGACC CACGGCACGC GCGCGAGAAT ATAGACCCGT CGTCAGCCGT CGAXXX ^Ama006 GATTTCGTAA CATCAGGATT TACGCXACGT GCGCGAGAAT ATAGACTTAT TAGTXGGCGT CGAXXX ^Smi165 GATTTCGCGG TGGCAGAGTT CGCGACATGT GCGAGAGAAT ATGAGTCCAT GATCCGCTAT CGAXAX ^Aga001 GATTATATAA TGACAGAACT TGGGACACGT ACGCGAGAAT GCAGAGCCAT CAGCAGCCGT CGAXXX ^Ama018 GAAXTCXTGX CGACXGGACC CAGGGXACGX XCXXGGGAGX ATAAXCCTAT CGGCXGCCXT AGAXXX ^Aga002 GTTTTTATAA TGACAGAACT TGGGCCACGT ACGCGAGAAT ACAGATCCAT CAGCAGCCAT CGAXXX 1206 1 2 174 3 4 1 46 1 8 1 5 1 2 1 9 1 2 1 1 1 1 1 1 1 8 2 1 1 2 1 3 2 1 1 1 8 979 4 48 4 3 17 1 1 1 2 1 1 2 1 1 2 2 1 4 1 1 1 4 1 26 1 1032 6 294 10 43 P ^Age001 ATTAGGCAAT TTTTAGGCTT ATAGACACAT GAGXXXXXXX XXX ^Adi002 ATTAGGCAAT TTTTAGGCCG GCTAGAGACA TTXGCGAGCT XXX ^Adi001 ATTAGGCAAT TTTTATTTTT GCTAGAGACA TCXGCGAGCT XXX ^Aru127 ATTAGGCAAT TCCCGGGCTT ATAGGAGACA CAXGCGXXXX XXX ^Aru001 ATTAGGCAAT GTTCGGGGTT ATAGAAGACA CAXGCGXXXX XXX ^Ama006 ATTAGGCAGC TTATGGGTTT ATAAAAGACG CAXGCGXXXX GAX ^Smi165 ATTAATTXAT TTTTAGXTTG ATTGACGACA CAXGCTAGXX GGX ^Aga001 ATGGGGTAAC TTTTGGGCTT AGAGAAGATA CAXGCGAXGX XXX ^Ama018 ATTAGGCAGC TTATGGGTTT ATAAAAGACG CAXGCGXXXX GAX ^Aga002 ACTGGCTAAC TTTTGGGCTT AGAGAAAATA CAXGAGXXXX XXX 2865 3 1 6 45 1 1 2 8 2 5 1 1 7 3 8 1 1 7 1 18 1 7 1 1 1 1 62 1 1 1 1 4 145 1 2 2 1 1 5 134 13 439 10 35 P ^Age001 AGAATCCCTC ACATTCGATX XXXXXXXXXX XXXXX ^Adi002 AGAATCCCTT GTGCATTTAG GACAGTAGTT CTXXX ^Adi001 AGAATCCCTC ATGCATTTAG GACAGTAGTT AGTCX ^Aru127 AGAATCCGCC GCATATTTAG GACAGTTTCA AGTGG ^Aru001 AGAATCTGCC GCATATTTAG GACAGCTTCG AGXXX ^Ama006 AGAATCCCTC GTGCATTTAG GACACTAGCG AGTCG ^Smi165 AGGXXXXCXC XCXXAGXXXG AXXXXXXXXX XXXXX ^Aga001 AAAATCCGTC GCATATTTAG GACAGTATCT AGXXX ^Ama018 AGAATCCCTC GTGCATTTAG GACAGTAGCG AGTCG ^Aga002 AAAAAXCGTC XCACATTCXG GATXXTXXXX AXXXX 298 1 13 15 9 79 1 1 1 1 1 1 1 1 2 1 1 3 14 60 3 45 5 222 2 1 1 1 2 1 1 1 38 1 27 10 16 P ^Age001 TGTGAAACAC GGAGCX ^Adi002 TGTGAAACAC AAGAAC ^Adi001 TGTGAAACAA GAGAAC ^Aru127 TGTGAAGGTC GGGAAC ^Aru001 TGTGAAAGTC GGGAAC ^Ama006 TGTGATACAC GGGAAC ^Smi165 TGCAGAACAC GGAAGC ^Aga001 TATGAAACTC GGGAAC ^Ama018 TGTGGTACAC GGGAAC ^Aga002 TGTAAAACTC GGGAAC 933 2 27 1 1 4 1 2 1 4 3 4 1 10 2 3 10 37 P ^Age001 TGTTAGAATA GAAATAXXXX XXXXXXXXXX XXXXXXX ^Adi002 TGTTAGAATT TGGTATATAG TTAGTGGATA GGAGGTX ^Adi001 TGTTAGAACA TGGTATATAG TTAGTGGATA GGAGCGX ^Aru127 TGTTAAGGTA GAGTAGATAG TTAGTGGATA ATCCGTX ^Aru001 TGTTAGGGTA GAGTAGATAG TTAGTGGATA ATCCGTX ^Ama006 TGTTCGAGTA GGGTATATAG TTAGTACCAG GGACGTX ^Smi165 TGTAAGAGTA GGATGTATAG TCGAXGGAAT GGGCGTX ^Aga001 TGCTAGAGTA GAATAAAATX XTXXTGGXAA GTGCGXX ^Ama018 TCTTCGAGTA GGGTATATAG TTAGTGCAAG GGACGTX ^Aga002 TGCTAGAGTA GAATAAATTG CTAATGGAAA GTACGTX 815 1 2 22 6 2 3 1 4 1 5 1 1 16 1 1 317 1 2 45 2 9 2 1 6 1 1 1 1 1 2 1 1 1 4 3 144 10 41 P ^Age001 GAGGTTACGT CCTTTTACCT GTCCXXXXXX XXXXXXXXXX X ^Adi002 GAGGTTACGT CCTTTTACCT ACTTAATXXX XXXXXXXXXX X ^Adi001 GAGGTTACGT CCTTTTGTTX ACTXAATTAA GGAACATTXX X ^Aru127 GAGGTTACGT CTGCCXACTX GCTXAACTTX XXXXXXXXCT X ^Aru001 GAGGTTACGC TCGCCXACTX GCTXAACTTX XXXXXXXXCC X ^Ama006 GAGGTCGTAT TCTTCTACTX GCAXAACTTA GGAAAGCCXX X ^Smi165 GAGGCTATAT CCTTCTAATX GCTXAGCTTA GGTXCGCXXX X ^Aga001 GAAATTACGT CCTTCTATTX GCTXAACTTA AAAACACCXX X ^Ama018 GAGGTTGCAT TCTTCTACTX GCAXAACTTA GGAAAGCCXX X ^Aga002 GGGATTACGT CCTCCTACTX GCTXAACTTA GAAACACCXX X 2976 1 5 3 57 1 8 1 2 2 1 2 67 1 1 4 5 1 27 408 6 21 1 5 97 4 1 10 1 378 1 1 10 53 3 1 2 1 372 1 765 10 35 P ^Age001 ACTTATGTAT TGTTGGTGCG GCTAAGATTG CACXX ^Adi002 ACTTATGTAT TGTTGCCATA CTCCTTXXXX XXXCX ^Adi001 ACTTATGTAT TGTGAGTGCA CTCCGCXXXX XXXXX ^Aru127 ACTTATGTAT CTGTAGTGTG CTCCGCXXXX XXXXX ^Aru001 ACTTATGTAT TTGTAGTGTG CTCCGCXXXX XXXXX ^Ama006 ACTTATGTAC TGGTAGTGCG CTCCGCATTG ACAXX ^Smi165 ACTTGCAAXT TGTTAGCTTG GTCCACAXXX XXXXX ^Aga001 ACACATACAT TGGTAGTGCG CCCTGCATTA CAAXX ^Ama018 ACTTATGTAC TGGTAGTGCG CTCCGCATCG CCAXX ^Aga002 ATAGACACAT TGGTAGTGCG CCCTGCXXXX XXXXX 1613 17 26 1 31 2 8 1 3 4 1 4 2 4 2 44 8 5 1 3 1 1 8 1 2 1 12 378 2 1 1 1 4 6 201 10 16 P ^Age001 CGCCCTGAGT CTGCCG ^Adi002 CGCCCTGAGT CTATTT ^Adi001 CGCCCTGAGT CTGCTT ^Aru127 CGCCCTGAGC GGGCCT ^Aru001 CGCCCTGAAC GGGCCT ^Ama006 CGCCCCAGGT GGGCCT ^Smi165 CGCTTTATGT CGGTCT ^Aga001 CCACTTGAGT GTGCCT ^Ama018 CGCCCCAGGT GGGCCT ^Aga002 CGACTTGAGT GTGCCT 966 2 4 42 1 4 1 1 2 3 1 1 2 2 2 1 10 34 P ^Age001 TTACCAGCCC TCGTGCTGCT CTAGGTXXXX XXXX ^Adi002 TTACCAGCCC TCGTATCCAA TCCTTGTTTX XXXX ^Adi001 TTACCAGCCC TTACGCTGCA TCCTTCTGCT CTTX ^Aru127 TTACCAGGTT CCGTGCTGCT CTATATXXXX XXXX ^Aru001 TTACCAACTT CCGTGCTGAT CTATATXXXX XXXX ^Ama006 TTACCCGCCC CCGCGCTCCT CCCTATXXXX XXXX ^Smi165 TTACTAGCCT TCACGCGCCT TTCTCTTTCT CAXX ^Aga001 TTCTCAGCCC CCGCGTTCCT CTCTATTTGT ATXX ^Ama018 TTACCCGCCC CCGCGCTCCT CCCTATXXXX XXXX ^Aga002 TAATCAGCCC CCGCGTTCCT CCCTATXXXX XXXX 806 1 3 1 21 4 1 1 5 1 1 7 1 1 6 1 1 2 1 2 2 1 2 5 1 1 1 1 1 1 1 1 9 216 10 65 P ^Age001 GTACCTGCCC TTGTGCTCCG CAAATCGTAG TGGGGCGTTG GGCGGAACAA CGCGXXXXXX XXXXX ^Adi002 GTACCTGCCC TTGTGCTCCG CAAATCGTAG TGTCAGAGCC ACTACGGTGG GCGXTGXXXX XXXXX ^Adi001 GTACCTGCCC TTGTGCTCCG CAAATCGTAG TCGGGCGTCC ACTACGGTGG GAAXTGAXXX XXXXX ^Aru127 GTACCTGCCC TTGTGCTCCG CAAATTTGGC CGGGGCGCTG GGCGGGGTGG TGAATXXGCC TAXXX ^Aru001 GTACCTGCCC TTGTGCTTTC TGGXXCGTAC CGGGAGCTTG GGCGCGGTGG GGAGTXXGCC TTXXX ^Ama006 GTACCTGCCC TTGCAACCCG CAGATCGTGG CGGGGCGTTG GGCAGGGTGG TGAATXXGCT CAGXX ^Smi165 GTACCTGCTT AAATGCCCCG CGGATCGAGG CGGGGGGTTG GCTGCAGTGG TGAATXXGTC TAXXX ^Aga001 GTACTCCTCC TTATGTTCCG TGGATCGTGG CGGGAGGTTG GGCGCGGTGG TGAATXXGCC TAXXX ^Ama018 GTAGCTGCCC TTGTACCCCG CAGATCGTGG CGGGGCGTTG GGCAGGGTGG TGAATXXGCC CAXXX ^Aga002 GAXCCCAXCT CXGTGCTCTX XXXACCXTXG CGGXXXGTTC CGXGXGATCX XGAXTXXGCC TAXTX 923 112 132 9 1 2 1 3 35 1 2 4 1 8 3 1 2 8 1 3 1 2 1 2 1 1 2 1 2 1 4 2 23 1 2 7 1 1 13 1 1 1 1 1 1 1 1 11 1 6 1 1 1 4 3 4 468 92 1 1 1 1 3 143 417 10 33 P ^Age001 TATGTGCATC TACACGTTTC TGTTATTTCT GTX ^Adi002 TATGTGCATC TACATAAAGA AAACGCACTC AGX ^Adi001 TATGTGCATC TACACGTTTC TGTTATTCTC AGX ^Aru127 TATGTGCATC TGTGCAAAGA AAACTGGTCC ACX ^Aru001 TATGTGCATC GGTGCAAAGA AAACTGGTCC ACX ^Ama006 TATGTGCATT TGTGCAAAGA AAACTGGTCC ACX ^Smi165 TATGTATCAC TATGCGTAGA CTCGACGTTC ACX ^Aga001 TATAXGTTXC TATCCGATGG TACACAATCC ACA ^Ama018 TACGTGCATC TGTGCAAAGA AAACTGGTCT ACX ^Aga002 TTTGTGCATC TGTGCGTTTC TGTTATTTCC ACX 731 1 2 25 8 16 2 5 1 2 1 2 1 1 1 2 3 4 4 3 1 2 3 4 1 1 1 3 1 1 6 1 603 Per-locus sequences in data and 'species&tree' tag: C.File | Data | Status | Population -------+------+--------------------------------------+----------- 3 | 2 | [OK] | Adig 2 | 2 | [OK] | Agra 1 | 1 | [OK] | Agre 2 | 2 | [OK] | Amad 2 | 2 | [OK] | Arub 1 | 1 | [OK] | Smic Initial MSC density and log-likelihood of observing data: log-PG0 = 4591.757640 log-L0 = -475528.209522 0:00 taken to read and process data.. Restarting timer... -*- Terms index -*- Prgs: progress of MCMC run (negative progress means burnin) Gage: gene-tree age proposal Gspr: gene-tree SPR proposal th1: species tree theta proposal (tips) (sliding window) th2: species tree theta proposal (inner) (sliding window) thg: species tree theta proposal (inner) (gibbs sampler) tau: species tree tau proposal mix: mixing proposal mrte: migration rates proposal theta1: mean theta of node 1 theta2: mean theta of node 2 theta3: mean theta of node 3 tau1: mean tau of node 6 tau2: mean tau of node 7 tau3: mean tau of node 8 W1: mean migration rate Adig -> Agre W2: mean migration rate Agre -> Adig log-PG: log-probability of gene trees (MSC) log-L: mean log-L of observing data | Acceptance proportions | Prgs | Gage Gspr th1 th2 thg tau mix mrte | theta1 theta2 theta3 tau1 tau2 tau3 W1 W2 log-PG log-L -------------------------------------------------------------------------------------------------------------------------------------- -45% 0.32 0.20 0.56 0.39 0.95 0.08 0.01 1.00 0.0060 0.0053 0.0106 0.0137 0.0063 0.0050 25.1446 17.1438 3598.20493 -451124.00374 0:40 -40% 0.32 0.20 0.59 0.41 0.95 0.07 0.01 1.00 0.0059 0.0053 0.0103 0.0134 0.0057 0.0050 21.6740 16.9364 3596.51315 -451102.78379 1:19 Gage Gspr th1 th2 tau mix mrte Current Pjump: 0.32373 0.20157 0.59289 0.41542 0.07344 0.00608 1.00000 Current finetune: 5.00000 0.00100 0.00050 0.00200 0.00100 0.30000 0.10000 New finetune: 5.46989 0.00064 0.00132 0.00300 0.00023 0.00562 10.00000 => 'finetune = 1 Gage:5.469887 Gspr:0.000643 th1:0.001319 th2:0.003000 tau:0.000227 mix:0.005623 mrte:10.000000' -35% 0.32 0.20 0.34 0.30 0.95 0.35 0.61 1.00 0.0059 0.0053 0.0078 0.0127 0.0052 0.0050 18.7407 14.7667 3576.54572 -451083.97993 1:59 -30% 0.32 0.20 0.36 0.33 0.95 0.35 0.61 1.00 0.0058 0.0052 0.0089 0.0127 0.0051 0.0050 18.6320 15.6514 3559.91174 -451079.24713 2:33 -25% 0.32 0.20 0.37 0.34 0.95 0.34 0.61 1.00 0.0058 0.0052 0.0090 0.0128 0.0051 0.0050 18.2468 15.9587 3573.78734 -451078.80836 3:08 Gage Gspr th1 th2 tau mix mrte Current Pjump: 0.32425 0.20045 0.36871 0.33725 0.34277 0.61056 1.00000 Current finetune: 5.46989 0.00064 0.00132 0.00300 0.00023 0.00562 10.00000 New finetune: 5.99552 0.00041 0.00169 0.00345 0.00027 0.01573 99.00000 => 'finetune = 1 Gage:5.995522 Gspr:0.000411 th1:0.001693 th2:0.003447 tau:0.000267 mix:0.015733 mrte:99.000000' -20% 0.32 0.20 0.20 0.22 0.95 0.31 0.30 1.00 0.0057 0.0052 0.0104 0.0133 0.0051 0.0050 18.0526 16.9608 3587.78173 -451082.88931 3:43 -15% 0.32 0.20 0.22 0.24 0.95 0.31 0.30 1.00 0.0057 0.0053 0.0095 0.0129 0.0051 0.0050 18.2294 15.9860 3519.71277 -451079.97448 4:18 Gage Gspr th1 th2 tau mix mrte Current Pjump: 0.32395 0.20042 0.22710 0.24801 0.30258 0.29520 1.00000 Current finetune: 5.99552 0.00041 0.00169 0.00345 0.00027 0.01573 99.00000 New finetune: 6.56418 0.00026 0.00124 0.00278 0.00027 0.01544 99.00000 => 'finetune = 1 Gage:6.564178 Gspr:0.000263 th1:0.001239 th2:0.002778 tau:0.000269 mix:0.015440 mrte:99.000000' -10% 0.32 0.20 0.36 0.48 0.95 0.31 0.32 1.00 0.0057 0.0052 0.0100 0.0137 0.0052 0.0050 18.4950 16.9661 3614.10536 -451089.61901 4:53 -5% 0.32 0.20 0.38 0.47 0.95 0.30 0.31 1.00 0.0057 0.0052 0.0094 0.0133 0.0051 0.0049 18.2355 16.1612 3633.92606 -451083.28954 5:27 0% 0.32 0.20 0.39 0.47 0.95 0.30 0.31 1.00 0.0057 0.0052 0.0100 0.0132 0.0052 0.0050 18.3117 16.7202 3629.38605 -451082.20684 6:03 Gage Gspr th1 th2 tau mix mrte Current Pjump: 0.32385 0.20118 0.38564 0.46643 0.30243 0.30896 1.00000 Current finetune: 6.56418 0.00026 0.00124 0.00278 0.00027 0.01544 99.00000 New finetune: 7.18423 0.00017 0.00168 0.00491 0.00027 0.01598 99.00000 => 'finetune = 1 Gage:7.184227 Gspr:0.000169 th1:0.001684 th2:0.004905 tau:0.000272 mix:0.015982 mrte:99.000000' 5% 0.32 0.20 0.26 0.22 0.95 0.30 0.30 1.00 0.0057 0.0052 0.0099 0.0132 0.0052 0.0050 18.5733 16.6822 3586.96479 -451082.88606 6:37 10% 0.32 0.20 0.27 0.22 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0097 0.0132 0.0051 0.0050 18.2717 16.3810 3673.52821 -451081.88899 7:12 15% 0.32 0.20 0.28 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0100 0.0131 0.0051 0.0050 18.1356 16.6024 3623.46559 -451081.63112 7:47 20% 0.32 0.20 0.28 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0099 0.0131 0.0051 0.0050 18.0103 16.5082 3540.01349 -451081.50330 8:22 25% 0.32 0.20 0.29 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0098 0.0130 0.0051 0.0050 17.9635 16.4938 3583.64457 -451080.37420 8:57 30% 0.32 0.20 0.29 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0099 0.0130 0.0051 0.0050 18.0559 16.5730 3587.50046 -451079.78115 9:31 35% 0.32 0.20 0.29 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0101 0.0130 0.0051 0.0050 18.1919 16.6538 3605.95245 -451080.42280 10:06 40% 0.32 0.20 0.29 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0102 0.0131 0.0051 0.0050 18.2125 16.7362 3642.28068 -451081.22269 10:42 45% 0.32 0.20 0.29 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0103 0.0132 0.0051 0.0050 18.2244 16.8610 3622.98962 -451082.14509 11:17 50% 0.32 0.20 0.29 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0104 0.0132 0.0051 0.0050 18.1697 16.9448 3612.76091 -451081.97542 11:52 55% 0.32 0.20 0.30 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0103 0.0131 0.0051 0.0050 18.1375 16.8522 3582.62215 -451081.53809 12:27 60% 0.32 0.20 0.30 0.23 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0103 0.0131 0.0051 0.0050 18.1137 16.9154 3665.49092 -451081.59873 13:03 65% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0102 0.0132 0.0051 0.0050 18.1072 16.8596 3565.15538 -451081.75190 13:38 70% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0102 0.0131 0.0051 0.0050 18.1035 16.8799 3592.51785 -451081.37965 14:15 75% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0103 0.0131 0.0051 0.0050 18.1444 16.9280 3703.57830 -451081.26553 14:50 80% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0103 0.0131 0.0051 0.0050 18.1612 16.8930 3610.33227 -451081.36469 15:26 85% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0102 0.0131 0.0051 0.0050 18.1488 16.8215 3605.79561 -451081.55837 16:02 90% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0102 0.0132 0.0051 0.0050 18.1628 16.8232 3617.92105 -451082.01390 16:38 95% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0103 0.0132 0.0051 0.0050 18.1701 16.8685 3560.89046 -451082.08798 17:13 100% 0.32 0.20 0.30 0.24 0.95 0.30 0.30 1.00 0.0057 0.0053 0.0102 0.0132 0.0051 0.0049 18.1476 16.8146 3569.55277 -451082.20859 17:48 17:48 spent in MCMC Node-Index Node-Type Node-Label --------------------------------- 1 Tip Adig 2 Tip Agra 3 Tip Agre 4 Tip Amad 5 Tip Arub 6 Tip Smic 7 Root MRCA( Amad,Arub,Agra,Adig,Agre,Smic ) 8 Inner MRCA( Amad,Arub,Agra,Adig,Agre ) 9 Inner MRCA( Amad,Arub,Agra,Adig ) 10 Inner MRCA( Amad,Arub,Agra ) 11 Inner MRCA( Amad,Arub ) param mean median S.D min max 2.5% 97.5% 2.5%HPD 97.5%HPD ESS* Eff* rho1 ------------------------------------------------------------------------------------------------------------------------------------------- theta:1 0.005706 0.005650 0.000692 0.003608 0.008585 0.004489 0.007222 0.004441 0.007142 3888.376363 0.388838 0.075820 theta:2 0.005261 0.005209 0.000645 0.003352 0.008916 0.004139 0.006690 0.004068 0.006569 9368.984328 0.936898 0.028660 theta:3 0.010190 0.009553 0.004653 0.000348 0.042140 0.002955 0.021054 0.002143 0.019577 439.960590 0.043996 0.256864 theta:4 0.004447 0.004399 0.000547 0.002911 0.007349 0.003509 0.005646 0.003461 0.005564 9293.261929 0.929326 0.022723 theta:5 0.006217 0.006154 0.000796 0.003877 0.010032 0.004837 0.007939 0.004763 0.007831 9598.062294 0.959806 -0.002899 theta:7 0.033533 0.033420 0.002705 0.025028 0.044135 0.028507 0.039016 0.028500 0.039000 427.620773 0.042762 0.222535 theta:8 0.022606 0.022534 0.001643 0.016342 0.030129 0.019545 0.026066 0.019292 0.025704 3040.588736 0.304059 0.131894 theta:9 0.006714 0.006079 0.003682 0.000105 0.025906 0.001463 0.015589 0.000540 0.013824 4998.694430 0.499869 0.149050 theta:10 0.015532 0.015338 0.003445 0.002961 0.038897 0.009404 0.022896 0.008981 0.022322 2048.715179 0.204872 0.313470 theta:11 0.007514 0.006882 0.004081 0.000175 0.028616 0.001590 0.017339 0.000656 0.015340 6514.476854 0.651448 0.149342 tau:7 0.013158 0.013184 0.000723 0.010954 0.015629 0.011711 0.014481 0.011707 0.014471 87.798045 0.008780 0.924202 tau:8 0.005127 0.005121 0.000224 0.004354 0.006489 0.004713 0.005584 0.004694 0.005560 303.985457 0.030399 0.806413 tau:9 0.004949 0.004949 0.000185 0.004219 0.005582 0.004578 0.005310 0.004593 0.005318 871.818652 0.087182 0.628823 tau:10 0.003640 0.003637 0.000193 0.002886 0.004559 0.003276 0.004030 0.003268 0.004020 2580.324968 0.258032 0.522418 tau:11 0.003353 0.003358 0.000204 0.002564 0.004003 0.002930 0.003737 0.002951 0.003750 2817.458583 0.281746 0.526582 W:1->3 18.224446 17.905753 4.096706 6.516517 38.524199 11.086492 27.159340 10.681823 26.603726 2201.131848 0.220113 0.171191 W:3->1 16.820629 16.541676 3.828763 6.526080 33.998102 10.149278 24.950489 9.446857 24.110673 618.686964 0.061869 0.225220 M:1->3 0.046596 0.041960 0.024542 0.001269 0.206297 0.012107 0.106856 0.005363 0.094606 570.315327 0.057032 0.252136 M:3->1 0.023915 0.023424 0.005876 0.008872 0.056797 0.013883 0.036779 0.013089 0.035529 1399.916185 0.139992 0.118656 lnL -451082.085812 -451081.790000 24.613414 -451170.800000 -450993.751000 -451130.517000 -451034.348000 -451128.879000 -451032.934000 770.235818 0.077024 0.235815 List of nodes, taus and thetas: Node (+1) Tau Theta Label 0 0.000000 0.005706 Adig [ Adig ] 1 0.000000 0.005261 Agra [ Agra ] 2 0.000000 0.010190 Agre [ Agre ] 3 0.000000 0.004447 Amad [ Amad ] 4 0.000000 0.006217 Arub [ Arub ] 5 0.000000 -1.000000 Smic [ Smic ] 6 0.013158 0.033533 Amad,Arub,Agra,Adig,Agre,Smic [ Adig Agra Agre Amad Arub Smic ] 7 0.005127 0.022606 Amad,Arub,Agra,Adig,Agre [ Adig Agra Agre Amad Arub ] 8 0.004949 0.006714 Amad,Arub,Agra,Adig [ Adig Agra Amad Arub ] 9 0.003640 0.015532 Amad,Arub,Agra [ Agra Amad Arub ] 10 0.003353 0.007514 Amad,Arub [ Amad Arub ] Summarizing parameter estimates using file baobab-mscm.conditional_a1b1.txt ...