Analysis started at: Fri Nov 29 15:53:30 2024 Using BPP version: 4.8.2 pver sha1: 1a053a3b61831dc4fb680235a5f6e63e8158ea54 Command: bpp --cfile baobab.A01.ctl Seed: 72241533 (randomly generated) Initial species tree: (((Agra, (Smic,Amad)),(Adig,Agre)),Arub); Locus | Model | Sequences | Length | Ambiguous sites | Compressed | Base freqs -------+-------+-----------+--------+-----------------+------------+------------ 1 | JC69 | 10 | 960 | 12 | 19 | Fixed 2 | JC69 | 10 | 933 | 72 | 18 | Fixed 3 | JC69 | 10 | 5945 | 4532 | 103 | Fixed 4 | JC69 | 10 | 4753 | 2331 | 56 | Fixed 5 | JC69 | 10 | 1623 | 312 | 30 | Fixed 6 | JC69 | 10 | 1158 | 0 | 15 | Fixed 7 | JC69 | 10 | 4890 | 437 | 63 | Fixed 8 | JC69 | 10 | 4217 | 3284 | 83 | Fixed 9 | JC69 | 10 | 1800 | 0 | 23 | Fixed 10 | JC69 | 10 | 1020 | 132 | 13 | Fixed 11 | JC69 | 10 | 807 | 195 | 28 | Fixed 12 | JC69 | 10 | 1104 | 114 | 23 | Fixed 13 | JC69 | 10 | 1805 | 783 | 101 | Fixed 14 | JC69 | 10 | 10366 | 5339 | 153 | Fixed 15 | JC69 | 10 | 1674 | 62 | 37 | Fixed 16 | JC69 | 10 | 1566 | 108 | 33 | Fixed 17 | JC69 | 10 | 870 | 0 | 9 | Fixed 18 | JC69 | 10 | 2918 | 1213 | 86 | Fixed 19 | JC69 | 10 | 2109 | 18 | 32 | Fixed 20 | JC69 | 10 | 2271 | 36 | 37 | Fixed 21 | JC69 | 10 | 1728 | 543 | 36 | Fixed 22 | JC69 | 10 | 3429 | 1507 | 67 | Fixed 23 | JC69 | 10 | 1411 | 433 | 33 | Fixed 24 | JC69 | 10 | 1371 | 0 | 17 | Fixed 25 | JC69 | 10 | 4002 | 1464 | 77 | Fixed 26 | JC69 | 10 | 1620 | 699 | 32 | Fixed 27 | JC69 | 10 | 2016 | 33 | 21 | Fixed 28 | JC69 | 10 | 3387 | 1458 | 75 | Fixed 29 | JC69 | 10 | 1140 | 0 | 23 | Fixed 30 | JC69 | 10 | 2112 | 6 | 30 | Fixed 31 | JC69 | 10 | 810 | 3 | 13 | Fixed 32 | JC69 | 10 | 4229 | 1961 | 36 | Fixed 33 | JC69 | 10 | 828 | 3 | 18 | Fixed 34 | JC69 | 10 | 7527 | 2958 | 71 | Fixed 35 | JC69 | 10 | 1137 | 191 | 49 | Fixed 36 | JC69 | 10 | 1539 | 102 | 39 | Fixed 37 | JC69 | 10 | 6710 | 1122 | 128 | Fixed 38 | JC69 | 10 | 1068 | 189 | 27 | Fixed 39 | JC69 | 10 | 1740 | 6 | 19 | Fixed 40 | JC69 | 10 | 873 | 0 | 16 | Fixed 41 | JC69 | 10 | 2476 | 802 | 54 | Fixed 42 | JC69 | 10 | 1516 | 1054 | 39 | Fixed 43 | JC69 | 10 | 1098 | 12 | 23 | Fixed 44 | JC69 | 10 | 4221 | 744 | 29 | Fixed 45 | JC69 | 10 | 1684 | 739 | 37 | Fixed 46 | JC69 | 10 | 6431 | 3832 | 49 | Fixed 47 | JC69 | 10 | 2302 | 998 | 45 | Fixed 48 | JC69 | 10 | 1395 | 342 | 12 | Fixed 49 | JC69 | 10 | 1500 | 93 | 28 | Fixed 50 | JC69 | 10 | 933 | 3 | 15 | Fixed 51 | JC69 | 10 | 1935 | 831 | 28 | Fixed 52 | JC69 | 10 | 7083 | 108 | 49 | Fixed 53 | JC69 | 10 | 1647 | 126 | 27 | Fixed 54 | JC69 | 10 | 2029 | 378 | 58 | Fixed 55 | JC69 | 10 | 1875 | 438 | 27 | Fixed 56 | JC69 | 10 | 1563 | 15 | 34 | Fixed 57 | JC69 | 10 | 1044 | 213 | 25 | Fixed 58 | JC69 | 10 | 11353 | 6452 | 68 | Fixed 59 | JC69 | 10 | 2562 | 3 | 28 | Fixed 60 | JC69 | 10 | 1614 | 6 | 31 | Fixed 61 | JC69 | 10 | 1482 | 168 | 23 | Fixed 62 | JC69 | 10 | 2281 | 1138 | 45 | Fixed 63 | JC69 | 10 | 2182 | 724 | 45 | Fixed 64 | JC69 | 10 | 1434 | 525 | 44 | Fixed 65 | JC69 | 10 | 6538 | 1672 | 49 | Fixed 66 | JC69 | 10 | 2410 | 1325 | 40 | Fixed 67 | JC69 | 10 | 5328 | 699 | 52 | Fixed 68 | JC69 | 10 | 1797 | 675 | 87 | Fixed 69 | JC69 | 10 | 4701 | 561 | 45 | Fixed 70 | JC69 | 10 | 5854 | 2525 | 92 | Fixed 71 | JC69 | 10 | 3064 | 1822 | 50 | Fixed 72 | JC69 | 10 | 1557 | 153 | 26 | Fixed 73 | JC69 | 10 | 960 | 195 | 18 | Fixed 74 | JC69 | 10 | 1530 | 6 | 19 | Fixed 75 | JC69 | 10 | 864 | 162 | 23 | Fixed 76 | JC69 | 10 | 1800 | 288 | 31 | Fixed 77 | JC69 | 10 | 1782 | 9 | 30 | Fixed 78 | JC69 | 10 | 1606 | 25 | 28 | Fixed 79 | JC69 | 10 | 1194 | 102 | 29 | Fixed 80 | JC69 | 10 | 1713 | 6 | 32 | Fixed 81 | JC69 | 10 | 1946 | 1577 | 67 | Fixed 82 | JC69 | 10 | 1349 | 524 | 27 | Fixed 83 | JC69 | 10 | 912 | 48 | 27 | Fixed 84 | JC69 | 10 | 3989 | 2918 | 105 | Fixed 85 | JC69 | 10 | 1863 | 150 | 29 | Fixed 86 | JC69 | 10 | 1241 | 19 | 23 | Fixed 87 | JC69 | 10 | 1138 | 298 | 27 | Fixed 88 | JC69 | 10 | 1335 | 3 | 28 | Fixed 89 | JC69 | 10 | 3489 | 384 | 58 | Fixed 90 | JC69 | 10 | 3948 | 2640 | 66 | Fixed 91 | JC69 | 10 | 3812 | 750 | 43 | Fixed 92 | JC69 | 10 | 855 | 537 | 35 | Fixed 93 | JC69 | 10 | 999 | 3 | 16 | Fixed 94 | JC69 | 10 | 1428 | 546 | 37 | Fixed 95 | JC69 | 10 | 5307 | 2118 | 41 | Fixed 96 | JC69 | 10 | 2400 | 609 | 35 | Fixed 97 | JC69 | 10 | 1035 | 0 | 16 | Fixed 98 | JC69 | 10 | 1110 | 231 | 34 | Fixed 99 | JC69 | 10 | 2487 | 1310 | 65 | Fixed 100 | JC69 | 10 | 1443 | 612 | 33 | Fixed COMPRESSED ALIGNMENTS 10 19 P ^Age001 TGGTCACAAT TCCTTAXXX ^Adi002 TGGTCACAAT TTTCACXXX ^Adi001 TGGTCACAAT CCTCACXXX ^Aru127 TGGTCACAGC TCCCATXXX ^Aru001 TGGTCACGAC TCCCATXXX ^Ama006 TGGTCCGTAT TCCCATXXX ^Smi165 TGGCTAAAAT CCCTATAXX ^Aga001 TAXTTACTAT TCCCATXGX ^Ama018 TGGTCCGTAT TCCCATXXX ^Aga002 TAXTTACTAT TCCCATXGX 905 4 3 17 1 2 1 1 2 2 1 1 3 1 6 1 3 3 3 10 18 P ^Age001 CGCGTACCTG CAACTXXX ^Adi002 CGCGTACCTG TGGGAAAC ^Adi001 CGCGTACCTG CGGGAAAG ^Aru127 CGCGTAGTAC CAGGGAGC ^Aru001 CGCGTACTAC CAGGGAGC ^Ama006 CGCGTGCCTC CAGGAAAC ^Smi165 CGCGCACCGG CAAGAAAC ^Aga001 CGCATACCTG CAGGAAAC ^Ama018 CGTGTGCCTC CAGGAAAC ^Aga002 CACATACCTG CAGGAAAC 777 1 2 5 25 3 1 1 1 1 1 2 1 39 1 70 1 1 10 103 P ^Age001 AGGGATTTCA CTGCTCCAGT AAAGCTGTTA CTGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 AGGGATTTCA CTATGTTGAC GGGTGCCGCC XXXAGATTGA TTCGAGTTAA AGCTAAAGGC CGGTAGGTCA CCACACAGCT GGTCXXXXXX XXXXXXXXXX XXX ^Adi001 AGGGATTTCA CGGCGTTGAC GGGTGCCGCT XXXAGATTGA TTCGAGTTAA AGCTAAAGGC CGGTAGGTCA CCACACAGTC AAGTXXXXXX XXXXXXXXXX XXX ^Aru127 AGGGATTTTT TTGCTCCAGT AGGTGCTAAA XXXAGATTGA TTCGAGTTAA AGCTAAAGGC GTAGTCAATG TGGACGXXCT GAGTAAGXXX XXXXXXXXXX XXX ^Aru001 AGGGATTACT TTGCTCCAGC GAAGGAGAAA CCXAGATTGA CCGCGXXXXX XXXXXXXXXX CGAGTAXXXX XXXXXXXXGX XACXXXXGXX XXXXXXXXXX XXX ^Ama006 AGGGAAGTCA CTGCTCTGAC GGGTGCCTCC XXXAGATCAG TTCGGGTTAA AGCTAAGCCX CTGGTGGTCA CGGATXAACT TAGTAGCXAT GAGAGCTXXX XXX ^Smi165 AGGGTTTTCA TTGGTTCGAT GAGCGCCTAC XXXAAGXTGA TCTXAGTTAA AATATXAGCC CTATTTGATC GCGAACAGCT GAGTAACXAT GGTCTTXGTA XXX ^Aga001 AGACATGTCA CTGCTCTGCC GGGTGCCTCC XXXAGATTGG TTCGGGTTTC XGTGGAATGC CTGGTGGTCA TGGXACXXCT GAGTAACXAC XATTAXXGAX GXX ^Ama018 AGGGAAGTCA CTGCTCTGAC GGGTGCCTCC XXXAGATTAG TTCGGGTCAA AGCTAAACGC CTGGTGGTCA CGGATCXXCT TAGTAACXXX XXXXXXXXXX XXX ^Aga002 ATGCATGTCA CTGCTCTGCC GGGTGCCTCC XXXAGGTTGG TTCGGGCTAC AGTTGAACGC CTGGTGGTTA TGGAACXXCT GAGTAACXAT XAGAAXXXXX XCX 1231 1 1 7 33 3 5 17 11 6 2 3 1 1 11 2 11 6 1 1 4 1 31 1 15 3 1 1 1 1 717 168 375 325 14 2 3 1 1 1 87 4 2 3 1 629 1 2 3 2 2 26 1 1 1 11 4 1 1 12 6 2 1 1 2 1 1 1 1 1 1 3 2 1 1 1 5 2 2 1 1 1 1 2 5 1 1 49 1 1 214 1 1 1 1 42 80 10 2 102 36 51 1491 10 56 P ^Age001 CCAATCGTCC CAGACATCGT TAGTGAAACT GGTXXXXXXX XXXXXXXXXX XXXXXX ^Adi002 CCAATCGTCC CAGACATCGT TAGTAGGGTC AAXAAACTCA AXXXXXXXXX XXXXXX ^Adi001 CCAATCGTCC CAGACATCGT TAGGGAAGTC AAXXXXXXXX XXXXXXXXXX XXXXXX ^Aru127 CCAATCGTCC CAGACATTAC CGTTGAAACC AAXAAACTCG GGGTAXXXXX XXXXXX ^Aru001 CCAATCGTCC CAGACACCGC CGTTGAAACC AAXXXXXXXX XXXXXXXXXX XXXXXX ^Ama006 CCAATCGTCT TTATTTTCGT CGCTGAAACC AAXAAACTGA GGGTAAGGAT TAGXXX ^Smi165 CCAATTCXXC CAATAXTCAT TGGTGGTATT AXXAAATCCA GGGCXXXXXX XXXAXX ^Aga001 CCAGGCGTAC CTGTTATCGT CACTGAAACC AAXAATCCCA GGACXAGGAA XXXXXX ^Ama018 CCGATCGTCC TTATTATCGT CGCTGAAACC AAXAGACTGA GGGTAAXXXX XXXXXX ^Aga002 CTAAGCATCC CTGTTATCGT CGCTGAAACC AAXXXXXXXX XXXXXAGCXX TGXXCX 2241 1 2 2 1 130 1 136 2 1 1 5 1 1 1 1 1 3 1 3 1 1 1 1 1 1 1 4 1 1 13 1 9 90 2 6 1 3 1 1 1 19 1 1 33 84 9 1 160 25 765 109 479 197 187 7 10 30 P ^Age001 GAGTATGACA CATATTATAC ATAXXXXXXX ^Adi002 GAGTATGACA CATGCCGAGG CCXCAGATTA ^Adi001 GAGTATGACA CATATCGAGG CCXCAGATTG ^Aru127 GAGTATACTX XXXAXTAAGG CXXCAGAGXG ^Aru001 GAGTACGATX XXXAXTGAGG CXXCAGTGXG ^Ama006 GAGCGTGCTA CACATTAAGG CCXCAGAGXG ^Smi165 GAATATGATA CGCATTATGG TCXCATAGTG ^Aga001 GGGTATGATA CACATTGAAG CCXCGGAGTG ^Ama018 GAGTGTGCTA TACATTAAGG CCXCAGAGXG ^Aga002 GGGTATGATX XXXAXTGAAG CXXCGGAGXG 1241 2 19 2 1 3 3 2 1 143 2 1 1 3 1 1 1 1 1 29 1 2 3 141 2 7 1 3 3 2 10 15 P ^Age001 TCCTTCCTAC TGCTG ^Adi002 TCCTTCCTAC TATCT ^Adi001 TCCTTCCTAC TATCT ^Aru127 TCCTTCCTGT CGCCT ^Aru001 TCCTTCTCGT CGCCT ^Ama006 TCCTTTCTAT CGTCT ^Smi165 TCCTCCCTAC CGTTT ^Aga001 TCCCTCCCAC TGTTT ^Ama018 TCTCTCCTAC TGTCT ^Aga002 TGCCTCCTAC TGTCT 1107 1 2 1 29 2 2 1 1 1 1 1 1 1 7 10 63 P ^Age001 AACAATTGCT CAGACCCTGT CCACGAGCTA ACTCTCATCC AXXXXXXXXX XXXXXXXXXX XXX ^Adi002 AACAATTGCT CAGACCCTGT CCACGAATCG GTCTCGTCTT XCATTCACGC AXXXXXXXXX XXX ^Adi001 AACAATTGCT CAGACCCTGT CCCTTXGCCG GTCTCGTCXX XCATTCACGG XCTCGTGTTT AXX ^Aru127 AACAATTGCT CAGACTTCAC TTACAAGCTA ATCTCGTACT XCATTCGAXA XCTCGTGTCG XXX ^Aru001 AACAATTGCT CAGCTCCTAC TTACAAGCTA ATCTCGTACT XCATTCGAXA XCTCGTGACG XXX ^Ama006 AACAATTGCG TGAACCCTGT CCACGAGCTA ACCTCGTCCT XCATCTAAXC XCTCGTGTCG XXX ^Smi165 AACAACGCGT CAGATCCCGT TTACGAGGTA GTTTCGGCTT XCACTCAAGG ACTCGCATCA XGX ^Aga001 AACGGTTCAT CGAACCTTGC CTACGAGCTG ATCCCGTCCT XCGTTTAAGT ACTGXTXTCG XXX ^Ama018 AAGAATTGCT TGAACCCTGT CCACGAGCTA ACCTCGTCCT XCATCTAAXC XCGCGTGTCG XXX ^Aga002 AGCAGTGCAT CAAACCTTGC GTATGXGCTG ATCCTGTCXX XCGTTTAAGT XCTCGTGTCG AXX 4122 3 6 3 15 153 1 1 1 5 11 1 1 1 1 4 1 1 17 3 1 2 7 14 1 39 5 1 28 1 1 2 3 1 1 32 1 1 1 1 9 147 1 10 2 1 3 3 2 1 1 30 1 3 8 2 1 1 1 1 39 111 18 10 83 P ^Age001 GTTCCGACCT ATCGCGCATA TGTAGCTAGG CAGACTGCAA TATGATTTTG TAAAXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 GTTCCGACCT ATCGCGCATA TGTAGTCGAA AGAGTCAGGC GCGACGGAXX XXXXTCATAG AACCTTCTGT GACTCATXXX XXX ^Adi001 GTTCCGACCT ATCGCGCATA TCCGTCTAGA AGAGTCAGGC GCGACAACTG CXXXTCATAG AACCTTCTGT GACCTCCTCC TXX ^Aru127 GTTCCGACCT ATCGCAGGCG CGTGTCTAAG CAGATCAGGC GCACTGACTC CXXXTCATAG AACCTTTGAC AGTTCCCTCT CXX ^Aru001 GTTCCGACCT ATTCTGCGCG CGTATCTAAG CAGATCAGGC GCACTGGCXX XXXXTCATAG AACCTATGAC AGTTCCCXXX XXX ^Ama006 GTTCCGACCC GCCGCGCATG CGTGTCTGAG CAAGCTAGGC GTGATGACTG CXXXTCATAG AGTTCTCTGT AGTTCCCTTC CXX ^Smi165 GTTCTTXXXT XXCCXGXAXA XGXXXCXAXG AXAXCXGGGG XXTXXXXXXX XAGXTCATAA XACTCTCTAX GGXTTCXXXX XCX ^Aga001 GTTTCGACTT ATCGCGCATG CGTATCTAAG CAAACCACGC GCGATGGCXX XXXXTCACTG AACCTTCGGT AGTTCCCXXX XXC ^Ama018 GTACCAATCC ACCGCGCATG CGTGTCTGAG CAAGCCAGGC GTGATGACTG CXXXTCGTAG AATCCTCTGT AGTTCCCTCC CXX ^Aga002 GCTTCGACTT ATCGCGCATG CGTATCTAAG CAAACCACGC GCGATGGCXX XXXXTGATTG AACCTTCGGT AGTTCCCXXX XXX 816 1 1 3 32 1 358 1 1 1 2 1 1 1 1 1 2 7 3 1 1 3 1 2 1 5 2 1 1 3 1 3 1 1 1 1 36 1 12 2 340 1 1 1 1 1 1 3 29 1 24 649 32 398 1129 1 1 1 2 61 47 2 7 1 1 2 3 1 2 1 2 5 1 1 1 1 1 73 1 1 3 60 9 10 23 P ^Age001 AAGTCCCTCA GAAGCCACGA CCT ^Adi002 AAGTCCCTCA GAAGCCGTAG TAG ^Adi001 AAGTCCCTCA GAAGGTACGG TAG ^Aru127 AAGTCCCTTG ATGACCACGA CAG ^Aru001 AAGTCCCGCG ATGCCCACGA CAG ^Ama006 AAGTTGTTCA GTGACCACGA CAG ^Smi165 AAGCCCTTCA AATGCCACAA TCG ^Aga001 AACTCCCTCA GTGACTACGA CAG ^Ama018 AGGTCGCTCA GTGACCATGA CAG ^Aga002 AACTCCCTCA ATGACTACGA CAG 1710 2 2 45 2 3 1 1 3 2 1 1 1 1 3 1 1 1 1 5 1 1 11 10 13 P ^Age001 TCTTCTATTA TCX ^Adi002 TCTTCTATCG CAX ^Adi001 TCTTCTAGTG CAX ^Aru127 TCTTCTCTTA CAX ^Aru001 TCTTCTCTTA CAX ^Ama006 TCTTGCATTA CAX ^Smi165 TCTACTATTA TAC ^Aga001 TCCTCCATTA CAX ^Ama018 TATTGCATTA CAX ^Aga002 TCCTCCATTA CAX 856 1 3 12 2 1 3 2 1 2 1 4 132 10 28 P ^Age001 GTGGAGGTGT TAAGCGCAAG CCTGCAXX ^Adi002 GTGGAGGTGT TAATTATGGA TAAXXXXX ^Adi001 GTGGAGGTGC CTGGCGCGGA TAAXXXXX ^Aru127 GTGGAGGCAT TAGGCGCAGA TAAGGXTA ^Aru001 GTGGAGACAT TAGGCGCAGA TAAGGXXX ^Ama006 GTGGGAGTGT TAAGCGCAAA TAAGCXTC ^Smi165 GTAXAAGTXT CXGGCAXXGG TGXXXXXX ^Aga001 GCGGAGGTGT TAAGCGCAAA TCAGCXXX ^Ama018 GTGGGAGTGT TAAGTGCAAA TAAGCXTC ^Aga002 GCGGAGGTGT TAAGCGCGAA TCAXXXXX 570 1 15 62 1 1 1 4 2 3 3 2 1 3 1 1 1 1 1 1 4 1 4 77 1 3 41 1 10 23 P ^Age001 GGTATCTCAT TGATTCGCCX XXX ^Adi002 GGTATCTCAT TGATTCATGT CCX ^Adi001 GGTATCTCAT TGATTCATGT CAX ^Aru127 GGTATCTCAT TGTCGGGTGT CCX ^Aru001 GGTATCTCAT TATCGGGTGT XXX ^Ama006 GGTATCTCGC CGATGGGTGT CCX ^Smi165 GGTATACTAT TGATTGGTAT CCX ^Aga001 GGCGGCTCAT CGACGGGTGT CCX ^Ama018 GGTATCTCAC CGATGGGTGT CCX ^Aga002 GCTGACCAAT TGACGGGTGT CCA 914 29 1 1 1 15 2 1 1 3 1 1 3 1 1 1 7 6 1 18 11 1 84 10 101 P ^Age001 CTAATATACC ATTTACGTAG CGCCAAGCAT AGCTGGACAA ATGCCCCGAG CTGTACGAGA TCCTGCGCAA TGGXXXXXXX XXXXXXXXXX XXXXXXXXXX X ^Adi002 CTAATATACC ATTTACGTAG CGCCAAGCAC GAGACAGGTC GAATTGTTTX XXXXXXXXXX XXXXXXXXXX XXXACTGCCC CGACAGGATG TTCTGXXXXX X ^Adi001 CTAATATACC ATTTACGTAG CGCCAAGATT AGCACAGGTC GAATTGTTGG CTGTACGAGA TCCTTTAGGX XXXACTGCCC CGACAGGATG CGTXXXXXXX X ^Aru127 CTAATATACC ATTTACGTAG CGTTCGACAT AGCTGGACAA ATGCTGTTAG CTGTACGAGA TTTCGCAGTA TGGACTGCCC CGGTGTAGCA TGTTXXXXXX X ^Aru001 CTAATATACC ATTTACGTAG AXCCCGACAT AGCTGGACAA ATAATGTTAG CTGTACGAGA GTTCGCAGTA TGGACTGCCC CGGTGTAGCA TGTTXXXXXX X ^Ama006 CTAATATACC ATTTGATGGX CGCCAAACAT AAATGGACTC GCGCCGTTAG CTGTACGCTX TCXXGTAGXA TTAACTGCCA AAACAGAGCA TGTTXTTXXX X ^Smi165 CTAATATATA GGCXACGGGG CGCCAAGCAT AGCTGGGTTC TTGCCCTTAG CTGTCTXAGA TCCTGTAGGA CGGACTAXXC CXACGCGACT TTXXXXXAXX X ^Aga001 CTAATGCXCC ACXTACGTXG CGCAAAGCGT AGCTGAACAC GTGCCGTTAG CTACACGAGA TCCTGCATGA TGGACCGCTC CGATACGGCA TGTTXXXXXX X ^Ama018 CTAGXATACC ATTTAAXGGX CGCCAAACAT XGATTGACTC GCGCCGTTAG CGGTACGCCX TCXXGTAGXA TTTATTGCCC AAACAGAGCA TGTTXTGXAT X ^Aga002 CCXATACXCT XCXTACGTXG CGCCAXGCGT AGCTGAACAC GTGCCGTXAG GTGCAGGAGA TCCCGCAGGA TGGACCGCTC CCATACGGCA TGTTXXXXAX X 855 4 13 1 3 3 10 8 40 2 1 1 3 3 2 13 1 5 1 6 1 3 2 1 8 1 1 4 1 2 1 1 1 19 1 3 2 2 4 4 1 1 2 1 1 1 21 1 1 359 1 2 2 1 21 1 1 2 1 6 1 2 1 1 7 2 8 1 1 15 1 1 1 164 2 4 16 51 1 1 2 1 2 1 1 1 1 2 6 1 2 1 1 3 1 5 1 13 4 4 7 10 153 P ^Age001 GAGTTTTAAC GAGAACGCAG TATCTTGAGA TCGAACAACA TTCCCTTTCG GTTAAGGTAC AGTTGTAGCA CGCGAAGCGC CGTGCTTACG CGGGGAGGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi002 GAGTTTTAAC GAGAACGCAG TATCTTGAGA TCGAACAACA TTCCCTTTCG GTTAAGGTTT GTCATCCAAT TATAGGTTAA TACATCCTTA GAATATACTC GTGCTCAGGG TCGTCGTCCG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Adi001 GAGTTTTAAC GAGAACGCAG TATCTTGAGA TCGAACAACA TTCCCTTTGA TCGTCATCAC AGTTGTAGCA TATAGGTTAA TACATCCTTA GAATATCATC GTGCTCAGGG TCGTCGTCTA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX ^Aru127 GAGTTTTAAC GAGAACGCAG TATCTTGAGG ATAGTTTGTG CCTTTCACCG GTTAAGGCAC GTCATCCAGG CGCGAAGCGC CACATCCTTA GAATATACTC GTGCTCAGGG TTACATGACA ATCACAATCA ACGCCCGATT CATXXXXXXX XXX ^Aru001 GAGTTTTAAC GAGAACGCAG TATCCCAGAA TCGAACTGTG CCTTTCCXCG GTTAAGGCAA AGTTGTAACA CGCGAAGCGC TGTGCCCTTA GAATATGCTC GTXXXXXXXX XTXXXXXXXX ATCACAATCA GTATXXXXXX XXXACTGTXX XXX ^Ama006 GAGTTTTAAC GAGTGTATCT XXXXTTGGXA ATAGXXAACA CCTTXXTCCG GTTACAXCAC ATCATCCAAG CGCGAAGTAX CACAXCCTTA GAAAXXACTC AXGGXXXXXX XCAXXXXXXX ATCACAGXXX ACATCAXXXX XXXXXXXXAX XXX ^Smi165 GAGTTCCGTA XXXAATAGGX TGXXTCTGGA TCAGAXAGTT TCTTGXTXCG GCGXAATCAC GGTTGCCGGG CGTACCXCGC TGTAXTTTTA GTXXGXAATG TTXXTCGXXX XCXTAXXXXX AGTXXXXTGX AXXXXXGGXX XXXXXXXXXA XXX ^Aga001 GAGAATTGTG GGCAACGCAG TATATTGAGA TTGGACAATA TTTTCCTTCG GTTAAGGTAC AGTACTCAAG CACAACGCAC CGCGTTCACA GAATATGCTC GTGCTAAGGG CCGTCGTACA ATTACGGXXA ACATXXGATC AXXAGXXXXX AXX ^Ama018 GAATTTTAAC GAGAGCACCG TATCTTGGGA ATAGACAACA CCTTCTTCCG GTTACAGCAC ATCATCCAAG CGCGAAGTAC CACATCCTTA GAATATACTC AXGCTCAGGT CCATCGGACA ATCATAAXXA ACAACCGATT AACXXTAXXX AGX ^Aga002 GGGTATCATC GACAACGCAG TATATTGAGA TCGAACAATA TTCTCCTTCA CTGAAGGCAC GGCAGCCGAG CACGAAGCAC CACATTCATG GAATATCATC GTGCTAAGAG CCGTCGTACA ATTACGGXXA ACATXXGATC AXXAGXXXXX AXX 4407 15 4 39 8 220 1 47 1 4 105 1 1 4 14 3 2 3 3 16 55 45 163 1 18 21 1 1 1 9 2 2 1 17 1 1 24 2 1 2 1 7 3 1 1 1 1 1 7 13 1 1 3 1 1 1 1 2 1 1 1 2 2 1 1 12 8 8 1 1 20 1 2 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 2 23 4 1 1 1 4 1 1 10 3 1 6 6 1 66 2 48 524 1 10 1 1 2 1 1 8 1 1 1 1 34 30 1 192 3 2 1 10 11 10 1 3 4 1 467 46 1 3 39 1 1 345 54 64 2 90 3 1 3 60 3 1677 1074 10 37 P ^Age001 CGATACGATA GTCATTTCAC TCATTXXXXX XXXXXXX ^Adi002 CGATACGATA GTCATTTCGT CTCCXTTAGA GATTCXX ^Adi001 CGATACGATA GTCATTTTGT CTCCXTTAGA GATTTXX ^Aru127 CGATACGATC ACTTXXXCAC CTTXTTAXXX XXXXTXX ^Aru001 CGATACGATC ACTTXXXCAC CTTXTTAXXX XXXXTXX ^Ama006 CGATACGGXA GTTTTTTCAC CTCTTXXAGA GGXXXXX ^Smi165 CGATGTAATA AGCATTCCAT CTCTTXXAGA AATXXXX ^Aga001 CGGXACAAXA GTCTTXTCAC TTCXTTAAAX GAXTTAX ^Ama018 CGATACGGXA GTTTTTTCAC CTCTTXXAGA GGXXXXX ^Aga002 CAGXATAAXA GTCTTXTCAC TTCXTTAAAX GAXTTAX 1518 2 2 1 49 2 1 9 2 6 1 2 1 2 1 2 1 1 5 1 1 8 1 1 3 3 1 27 1 2 1 1 1 1 1 9 3 10 33 P ^Age001 TGGGCTCTCT CCAATGGATG CGTCCGTAAG XXX ^Adi002 TGGGCTCTCT CCCGAATGAA TAGAXXXXXX AXX ^Adi001 TGGGCTCTCT CAAAAATGAA TAGGXXXXXX AXX ^Aru127 TGGGCTCTCA TCAATGGAAA TCACCGTXXX XXX ^Aru001 TGGGCTCTGT TCAATGGAAA TCACCGTXXX XXX ^Ama006 TGGGCTTGCT CCAATGGGTA TGACCGTXXX XTX ^Smi165 TGGGCCCTCT CCAATAAAAG TGAGCGCXXX AXX ^Aga001 TGGTTTCTCT CCAGAATGAA TAAGCXXAGX AXX ^Ama018 TGCGCTCGCT CCAATGGGTA TGACCGTXXX XTX ^Aga002 TAGGTTCTCT CCAGAATGAA TAAGCXXXXX AXX 1354 2 1 3 5 34 1 2 4 1 5 7 6 1 5 4 2 1 3 2 12 1 1 1 3 8 1 14 1 3 6 3 69 10 9 P ^Age001 ATACTCAGG ^Adi002 ATACTTGAA ^Adi001 ATACCCGAA ^Aru127 ATAGTCGAA ^Aru001 ATAGTCGAA ^Ama006 ATACTCGAA ^Smi165 ATGCTCAAA ^Aga001 AGACTCGAA ^Ama018 ATACTCGAA ^Aga002 AGACTCGAT 842 2 15 1 2 1 2 4 1 10 86 P ^Age001 TTCGGTGCCT ATGCATGGTA AACTAGCTGC ACTGGCCGTA GCGTCCGCGG GCGGAAAGAC CGCGGTGXXX XXXXXXXXXX XXXXXX ^Adi002 TTCGGTGCCT ATGCATGGTA AACTAGCTGC ACTGGCCGTA GCGTTGATAC AAACTCGATG GCGXXXXTGC CAATTGGTGA GCGXXX ^Adi001 TTCGGTGCCT ATGCATGGTA AACTAGCTGC ACTGGCCTGG TTACCCGTAC AAACTCGATG GCGGAXXTGC CAATTGGTGA GCGXXX ^Aru127 TTCGGTGCCT ATGCATGGTA AACTAAAACT CTCTTTXGTA GCACCCACGG GAACTCGATG GCAGGXXTGC CAATTGGTGA AAAXXX ^Aru001 TTCGGTGCCT ATGCATGGTA ACAGXGCTCT CTCTXXCGTA GTGCCCACGG GAACTCGATG GCGGGXXTGC CAAGGTTXXX GAXXXX ^Ama006 TTCGGTGCCT ATATGGAAXX XACTAGCTGC ACTGGCCGTA GCGCCCGCGG ACGGACGATG GTGGGXXTGC CGTTTTTTGG GAAGXX ^Smi165 TTCGGTATTG GXGCGCXXTG XAGXAGTXGC ATCXGTXGTG ATGCCTGCCX GCAXXAGACX XTGGGTXTTX XXXTXTXXXX XXXXGX ^Aga001 TTCCAXGCTA XTGCATGATA AACTAGCTGT GCCGGCCGCG GCACCCACGG GAGGTCGCTC GCGGGXXTGC TATTTGGTAA GAGXXX ^Ama018 TTTGGTGCCT ATGTGGAAXX XACTAGCTGC ACTGGCCGTA GCGCCCGCGG ACGGACGATG GTGGGXXTGC CGTTTTTTGG GAAGXX ^Aga002 TCCGAXGATA XTGCATGATA AACTAGCTGT GCCGGCCGCG GCACCCACGG GAAGTCGCTC GCGGGXXTGC TATTTGGTGA GAGXXX 1443 6 1 3 15 2 86 1 1 1 1 332 1 25 11 1 8 1 5 1 3 1 1 1 1 5 1 2 7 1 1 1 1 3 1 1 3 2 1 1 1 1 1 1 8 1 1 12 1 5 1 1 1 1 2 13 37 2 3 1 9 1 1 5 1 15 9 3 1 80 1 1 1 1 2 1 1 99 1 1 1 3 1 3 5 594 10 32 P ^Age001 CTCTGCAGTG CGTCGATAGA CTGTTAGGAG GG ^Adi002 CTCTGCAGTG CGTCGATAGC TCAGCGAAGA AC ^Adi001 CTCTGCAGTG CGTCGGAGTA CTGGCGAAGA AC ^Aru127 CTCTGCAGTA TCCAAATAGA CCATTAAAGA TA ^Aru001 CTCTGCAGTG TCCAAATAGA CCATTAAAGA TA ^Ama006 CTCTGCAGCG CGTAAATACA CCATCCGAGA GA ^Smi165 CTCTAAXXTG CGCCAAATGA TTATTAGGGT GC ^Aga001 CTACGAAGTG CCTAAATAGA CCATCAAAGA GA ^Ama018 CCCTGCAACG CGTAAATAGA CCATCCGAGA GA ^Aga002 CTCCGAAGTG CCTAAATAGA CCATCAAAGA GA 1939 3 1 7 63 1 17 1 2 2 4 2 2 6 6 11 1 1 1 9 1 1 2 2 1 1 1 1 17 1 1 1 10 37 P ^Age001 AGCACAGTAT GCGGTGCGCG TCGTGACCCA CCTTGAX ^Adi002 AGCACAGTAT GCGGTGCGCG TCGTGAGATG TGCGACX ^Adi001 AGCACAGTAT GCGGTGCGCG TCGTGGCCCG TGCGACX ^Aru127 AGCACAGTAT GCGGCATATA CGAXXACCCA CGCGACX ^Aru001 AGCACAGTAT GCGATGCATA CGATGACCCA CGCGACX ^Ama006 AGCACAGTAT GTAGTGCGCG CGATGACCCA CCCGACX ^Smi165 AGCACAGCTC CCAGTGGGCT TCATTACCGA TGTGATX ^Aga001 AGCGTGXTTC ACGGTTCGTC TGGTGACTGA CCCTACX ^Ama018 AGTACAGTAT GTAGTGCGCG CGATGACCCA CCCGACX ^Aga002 ACCATTGTAC GCGGTGCGCG CCGTGACCTA CCCTACX 2019 3 4 49 6 1 3 77 9 1 1 5 1 6 1 1 1 7 1 1 1 1 1 25 2 3 2 1 1 11 1 1 2 1 14 1 6 10 36 P ^Age001 GTAACGCGTT GGCGACCCGC TGCCTCCCCT AXXXXX ^Adi002 GTAACGCGTT GGCGACCCGC TGCAGTTTTG GAGXXX ^Adi001 GTAACGCGTT GGCGACCTAA ACXCTTTTTA CAACXX ^Aru127 GTAACGCGTT GGAAGTTCGC TGCCGCTTTT GAGXXX ^Aru001 GTAACGCGTT GACGGTTCGC TGCCGCTTTT GAGXXX ^Ama006 GTAACGCAGC XGCGATGCGC TACCGCTTTT GAGXXX ^Smi165 GTAAAXXGTX XGCXACCCAA CGCCGCCTXT GAGXAX ^Aga001 GTCGCGTGGT XGCGACTCGT TGCCGCTTTT GAGXXX ^Ama018 GTAACGCGTT XGCGACTCGT TGCCGCTTTT GAGXXX ^Aga002 GCAGCGTGGT XGCGACTCGT TGCCGCTTTT GAGXXX 989 1 5 1 91 180 1 2 1 1 6 1 2 1 1 1 1 60 10 1 2 1 9 4 1 2 2 4 3 1 1 2 1 3 306 30 10 67 P ^Age001 AGGAATCTTA TTGCGACTGT ATGGAGATTA CAAGCCACGA TTACCTGTCG AACTCGTTGA XXXXXXX ^Adi002 AGGAATCTTA TTGCGACTGT CGAAGACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Adi001 AGGAATCTTA TTGCGACTGT AGAAGACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Aru127 AGGAATCTTA TTGCGATCCG CTGGAACAGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Aru001 AGGAATCTTA TTGCAGCTGG CTGGAACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Ama006 AGGAATCTTT CCAGGACTGT CTGAGACCCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Smi165 AGGAAAACXA TTATGGCCXT CTAAGGCAGA CAAGTTTTTC XXXXXXXXXX XXXXXXXXXX AXXXXXX ^Aga001 AGGCCTCTTA TCGCGACTGT CTGGGACTCA CAGCCCATAG TTACCTGAGC CGTXXXXXXX XGXXXXX ^Ama018 AGAAATCCTA CCGGGACTGT CTGAAACCCA CCAGCCACTG TTATGXXTCG AGATCGCCCX XXATCXX ^Aga002 AAGACTTTTA TCGCGACTGT CTGGGACTCA GAAACTXTGG TGXCTTCTGA XAATAXTAXX XXAGXTX 1771 2 13 1 4 55 2 1 15 2 3 2 1 2 2 1 9 13 4 12 1 10 1 1 1 1 9 1 1 3 1 1 1 1 1 1 1 1 1 1 16 3 12 2 1 1 1 13 15 9 11 3 2 12 19 149 1 1 82 3 21 126 2 1 914 6 49 10 33 P ^Age001 CGTCCTACGC GTTACTAGAG ACGCGCCXXX XXX ^Adi002 CGTCCTACGC GTTACTAGGA TXXXXXXTTA CTX ^Adi001 CGTCCTACGC GTTACGXXGA XXXXXXXTTA CTX ^Aru127 CGTCCTACGT ACCGTTAAAA ACGCGCTTTG TAX ^Aru001 CGTCCCTTAC GTCGTTAAAA ACGCGCTTTA CTX ^Ama006 CGTCTTACGC ACTGTTAGAA ACGCTTCTTG TAX ^Smi165 CGGACTATCC GCTGTTACAA ACGTGCCTGA TGX ^Aga001 CATACTTTCC GTTATTAGAA ACTCGCCTTA CTX ^Ama018 CGTCTTACGC ACTGTTAGAA ACGCGTCTTG TAX ^Aga002 CATACTTTCC GTTATTAGAA ACTCGCCTTA CTX 911 3 18 10 3 1 1 1 1 3 8 1 1 1 1 4 27 1 2 8 2 155 1 4 2 2 1 55 2 1 1 1 178 10 17 P ^Age001 CGAATGCTGA ACTGCAC ^Adi002 CGAATGCTGA ATCATGA ^Adi001 CGAATGCTGA GTCATGA ^Aru127 CGAATGTCTG ACTGTGA ^Aru001 CGAATTCCTG ACTGTGA ^Ama006 CGAAAGCTGA ACTGTGA ^Smi165 CGAGTGCTGA ACCTCGG ^Aga001 CGAATGCTTG ACTGTGA ^Ama018 CGCAAGCTGA ACTGTGA ^Aga002 CAAATGCTGG ACTGTGA 1299 1 2 33 6 1 1 2 1 2 2 7 1 1 2 9 1 10 77 P ^Age001 ACAGAAAGCA GTCTGACGAT GACTAGTTGT GGTACGCATC AAGTGATCTT ACTGATAGTA CACCTCGGTA AXXXXXX ^Adi002 ACAGAAAGCA GTCTGACGAT GACTAGTTGT GGTAAATGCT GGACAGCTCA GTGCTGCACT TGTTGGCACX XGCCTXX ^Adi001 ACAGAAAGCA GTCTGACGGC ACTCGAAGAG AACXCGCATC AAGTGATCTT ACTGATAACT TGTTGGCTGA AGCXXTX ^Aru127 ACAGAAAGCA GTCTGGATAT GACTAGTTGT AAAACGCATC GGACAGCTCA GTGCGCTGTA TGTTATTGCX XGTCTXX ^Aru001 ACAGAAAGCA GTCCAAATAT GATCGAAACC AATACGCACT AAGTAGCTCA GTGTTCTGTA TGTGGTTTCX XGTCTXX ^Ama006 ACAGAAAGAG ACGTGACTAT GACTAGCTGT GATACATGCT AGACAGCTCA GTGCTCTGCT TGTTGGTGCX XGCCTXX ^Smi165 ACAGAGGACA GTCTGACGAT GCCCGTGTGC GACACGTGTT AAACGATTCA GAACTTCGTT CGGTGGCGCA TGCCCXX ^Aga001 ACAAGAAACA GCTTGACGAT ACCTGGATAT GACACGCGCT AAGCGACCTA GCGGTTAGCT TGTTGGCGTA AGCXXXX ^Ama018 ACGGAAAGCG ACGTGACTAT GACTAGCTGT GATACATGCT AGACAGCTGA GTGCTCTGCT TGTTGGTGCX XGCCTXX ^Aga002 AAAGGACGCA ACTTTACGAC GACTAGTTGT GATACGCATC AGACGGTTCT GTTCACTGCT TGTTGGCGCX XGCCTXX 2187 10 1 8 5 32 1 1 3 10 1 1 1 17 1 6 4 1 10 1 7 7 38 12 1 3 1 1 1 1 1 1 1 3 18 1 1 2 2 6 1 1 1 1 1 26 2 48 1 4 1 3 1 1 1 1 1 1 3 4 1 20 1 1 1 1 1 2 1 8 1 2 1 2 1 393 1053 10 32 P ^Age001 AAGGTAGATC AACCAGGGCT ACAGAAXXXX XX ^Adi002 AAGGTAGATC AACCAGGATC GTGCCXXXXX XX ^Adi001 AAGGTAGATC AACCAGGGTC GTGCCXXXXX XX ^Aru127 AAGGTAGATC AATTTATACT GTGCTXXXXX XX ^Aru001 AAGGTAGATC TGCCAGGGTC GTGCTXXXXX XX ^Ama006 AAGGTAGATT AGCCAGGATC GTGCCXTTAX XX ^Smi165 AAGGTAGTCC AACCTAAGCC ACGAAXXXXT XX ^Aga001 AAGCGXXAAC AGCTATGGTC GXGCCXTGXX GX ^Ama018 AAAGTACATC AGCCAGGGTC GTGCCXXXXX XX ^Aga002 ATGGGAGATC AGCTAGGATC ATGCAXXXXX XX 838 6 4 10 4 65 1 8 1 2 5 1 20 1 6 1 1 1 1 1 3 3 5 1 1 12 41 46 84 12 282 153 10 21 P ^Age001 CCGAGGCCTC GCATCCTGXX X ^Adi002 CCGAGGCCTC GCGCTTCCXX X ^Adi001 CCGAGGCCTC GGACTTCCXX X ^Aru127 CCGAGGCCCT CCATCTCCXX X ^Aru001 CCGAGGCATT CCATCTCCXX X ^Ama006 CCGGAAXCTC GCATTTCTCX X ^Smi165 CCAAACCCTC GCATTTGCXG X ^Aga001 CTGAGGCCTC ACATCTCCXX X ^Ama018 CCGGAAXCTC GCATTTCTCX X ^Aga002 CTGAGGCCTC ACATCTCCXX X 1745 14 50 116 17 4 9 2 2 6 1 2 1 9 1 11 1 1 18 3 3 10 75 P ^Age001 AAAGTGTTGT ATTTGCTCTA TAATCGCTGC TTTTGCGGGT GTGATGCCCX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 AAAGTGTTGT ATTTGCTCTA TAATCATGAG CACCATCACC CAXXXXXXXG GTAAGCAATT GTCTGAATGA XXXXX ^Adi001 AAAGTGTTGT ATTTGCTCTA TAATTATGAG CACCATCACC CAXXXXXXXG GTAAGCAATT GTCTGAATGG XXXXX ^Aru127 AAAGTGTTGT ATTTGCTCCG CGGCCGCTGC TACCATCACC TGGAAAXXXG GTAAGCAATT GTCTAGGXXA CTXXX ^Aru001 AAAGTGTTGT ATTTGCATTA CGGCCGCTGC TACCATCACC GGGAAAXXXG GTAAGCAATT GTCCAGGXXA CTXXX ^Ama006 AAAGTGTTGT ACGCATTTTA TAATCGCTGC CTCCATCACC GGGATAXXXG GTAAGCAATA TXXTGGGXXA CGXXX ^Smi165 AAAGTACAAX XTTXXXTCTG TAGXCGCGTX CTTTATCATX GGGXTACGXG GTAAAAGXXT GXXTAGGTCA XXCXX ^Aga001 AAGAXGTAAT CTTTGTXCTA TGATCGTGGC CACCGTCACC GGGAAAXXXG GTGXGGXXXT GTTTGGXXXA CGXTX ^Ama018 AAAGTGTTGT ATGTATTCTA TAATCGCTGC CTCCATCACC GGGATAXXXG GCAAGCAATT TXXTGGGXXA CGXXX ^Aga002 ATAATGCTAT CTTTGTTCTA TAATCGCTGC CTTCACCTCC GGXXTAXXXG CTAAGCAAGT GXXTAAGTGA XXXXX 1720 6 2 1 3 60 2 3 1 110 1 1 3 1 1 1 1 1 3 1 2 1 2 1 1 9 1 1 1 1 1 17 1 8 1 1 66 1 9 4 1 1 2 4 2 1 1 5 404 414 2 1 3 39 7 1 3 1 1 1 1 2 1 1 1 1 1 25 2 1 14 1 384 1 6 10 23 P ^Age001 CGATATAAAG TACTGACCAG GTA ^Adi002 CGATATAAAG TACTGACCGC ACG ^Adi001 CGATATAAAG TACTGGAAAG ACG ^Aru127 CGATATAACT CGTGAACCAG ACG ^Aru001 CGATATAAAG TACGAACCAC ACG ^Ama006 CGATATGTAG TGTTAACCGG GCG ^Smi165 CGATGAAAAG AATTAAAGGG ACT ^Aga001 CGACAAATAG TGTTAACCAG ACG ^Ama018 CGGTATAAAT TACGAACCAG GCG ^Aga002 CTACAAATAG TGTTAACCAG ACG 1068 2 3 3 29 1 1 2 4 1 1 2 1 1 1 4 2 1 1 1 1 9 1 10 30 P ^Age001 GTCGCCTTCT CTAGAGAAAC TCAATATAAX ^Adi002 GTCGCCTTCT CTAGAGAAAC CTTGCGCGGX ^Adi001 GTCGCCTTCT CTAGAGAAGT TCTGCGCGGX ^Aru127 GTCGCCTTCT CTAGACGCAC TCAATGCGCX ^Aru001 GTCGCCTTCT CTAGTGGCAC TCAATGCGCX ^Ama006 GTCGCCTTCC TCCXAGAAAC TCAATATGGX ^Smi165 GTCGCCAATT CCGGAGACAT TTAACGCGGX ^Aga001 GTCGATTTTT TCAXAGAAAC TCACTACGGX ^Ama018 GTGACCTTCT TCAGAGAAAC TCAATACGGX ^Aga002 GCCACTTACT TCAGAGAAAC TCAATACGGX 1992 2 5 1 4 2 46 1 1 3 10 3 1 3 2 3 3 1 2 1 5 1 4 1 1 1 1 8 1 3 10 13 P ^Age001 TCCAACTACG GGX ^Adi002 TCCAACTACT TAX ^Adi001 TCCAACTAGG TAX ^Aru127 TCCAACTTCG GAX ^Aru001 TCCAACATCG GAX ^Ama006 TCCAGTTACG GAX ^Smi165 TCCGACTACG GAA ^Aga001 TTTAACTACG GAX ^Ama018 TCCAATTACG GAX ^Aga002 TCTAACTACG GAX 747 1 4 30 1 3 2 2 1 7 4 5 3 10 36 P ^Age001 AGACTTGAAT CTTTGCGTCG GGGTGTAAGA AXXXXX ^Adi002 AGACTTGAAT CTTTGCGTCG TAACACGGAG CXXXXX ^Adi001 AGACTTGAAT CTTTGCGTCA GGACACGGAG CXXXXX ^Aru127 AGACTTGAAT CTTAATCATG GGGTGCGGAG TTCAXX ^Aru001 AGACTTGAAT CTGTGTCATG GGGTGCGGAG TXXXXX ^Ama006 AGACTTGAAC TCTTACCATG GGGTGTGGAG TTCAXX ^Smi165 AGACTAAGCT CCTTGCGTTG GGGTATAAAG TXXXXX ^Aga001 AGATCTGACT CTTTGCCGTG GAGTGCGGAG TXXXXX ^Ama018 AGGCTTATCT TTTTGCCATG GGGCGTAGGG TTTXAX ^Aga002 AAACCTGACT CTTTGCCGTG GAGTGCGGAG TXXXXX 2085 2 28 6 2 35 45 5 1 3 1 1 1 1 2 2 1 1 1 2 1 1 4 1 1 1 2 2 1 28 1 83 23 2 5 1848 10 18 P ^Age001 TGAGTGACCG CCACCGGX ^Adi002 TGAGTGACCG CCCTTACC ^Adi001 TGAGTGACCA ATATTAAC ^Aru127 TGAGTGGTTG ATACCAAC ^Aru001 TGAGTAACTG CCACCACC ^Ama006 TGAGGGACCG ATACCAAC ^Smi165 TGAATGACCG CTACTACC ^Aga001 TGGGTGATCG ATACCAAC ^Ama018 TAAGGGACCG ATACCAAC ^Aga002 TGGGTGATCG ATACCAAC 754 2 3 27 5 2 2 1 5 4 1 2 1 6 2 7 1 3 10 71 P ^Age001 CATTGAATCA TCCCATACCC GTCCTGCCCG GAGCCCATTG ATATGGAXXX XXXXXXXXXX XXXXXXXXXX X ^Adi002 CATTGAATCA TCCCATACCC GTCCTATTTA TGATTTGCGA GCGGAXXGCC TCAGAGAACT CGATGGXXXX X ^Adi001 CATTGAATCA TCCCATACCC GTCCCGCCCG GAATTTGCGA GCGGAXXGCC TCAAGATGGC TATXXXTXXX X ^Aru127 CATTGAATCA TCCCATGTTT ACATTGCCCG GGGCCCATTG GCGCTXXGTX XXXGGATTTX XXXXXXXTCX X ^Aru001 CATTGAATCA TCCCGAACCT ACATTGCCCG GGGCCCATTG GCGTTXXGCC XXXAAAXGAC AXXXXXXXXX X ^Ama006 CATTGAATCG ATGTAXATXC GTCGTGCCCG GAGCCCGCAX GCGTGXXXXX XXXXXXXXXX XXXXXXXXXX X ^Smi165 CATTGAGCTA TCCTATACCC GCGCTGCCTA AAGCTAACGA ACCACGTGCC TTXAAATGAC AAXTTXXAXA X ^Aga001 CATTATATTA TTTCATACCC ACACTGCCCG GAGTCCATGA GCGACXXGCC XXXAGAXGAC AXXXXXXXXX X ^Ama018 CATCGAATCA ATCTAXATXC GTCGTGCCCG GAGCCCGCAX GCGTGXXXXX XXXXXXXXXX XXXXXXXXXX X ^Aga002 CTXTGTACTA TTTCATACCC ACACTGTACA TGGTCCATGA GCGACXXGCC XXXAGAXGAC AXXXXXXXXX X 4250 10 3 3 8 16 100 1 2 2 22 1 1 1 2 1 9 1 1 17 7 9 1 1 4 6 25 2 1 1 1 1 18 1 2 1 2 1 1 1 2 32 2 1 1 2 1 8 10 1 98 15 675 4 1 7 1 5 1 1 1 2 155 15 11 1008 8 2 3 168 749 10 49 P ^Age001 CGCGTCACTT CTGAAGTGCT CGGAACAAAA TCAXXXXXXX XXXXXXXXX ^Adi002 CGCGTCACTT CTGAAGTGCT CGAGGTGGCC XXXAAGTTGA GTTGAAXXX ^Adi001 CGCGTCACTT CTGAAGTGCT AAGGGTGGCC TCGAAGTTGA GTTGGGXXX ^Aru127 CGCGTCACTT CTGAAGTTAX CGGAATGGCG TCGAAGTTGA GCGXAGGXX ^Aru001 CGCGTCACTT CTAGGXXGAT CGGAGCGGCG TCGAAGTTAC CTGGAGXXX ^Ama006 CGCGTCACGC AXGGGXXGCT CGGAGCGGCG TCGAAGTXGC CTGGAGXCX ^Smi165 CGCGTCATTT TTGAGGCGCT CGGAGCAGCG TCGAAGCTAC CTGGAGXXX ^Aga001 CGCGCTXCTT CTGGGXXGCT CGGAGCGGCG TCGAAATTGC CTGGAGXXX ^Ama018 CGCTTCACTC AXGGGXXGCT CGGAGCGGCG TCGAAGTXGC TTGGAGXCX ^Aga002 CAXGTTACTT CTGGGXXGCT CAGAGCGGTG TAGATGTTGC CTGGAGXXX 820 1 3 1 7 3 3 25 1 9 1 5 11 11 5 7 2 11 3 6 4 1 8 7 1 1 1 12 1 1 1 1 1 130 3 1 5 3 1 1 1 3 1 1 1 2 1 2 6 10 39 P ^Age001 TATGGTACCA ATCAGATTGC GTAAAACCAA CAXXXXXXX ^Adi002 TATGGTACCA ATCAGATTGC GCCGGGGTGT GXCCGCAXX ^Adi001 TATGGTACCA ATCAGATTGG CTAAGGGTGT AACCXXXXX ^Aru127 TATGGTACCA ATCAAGCCTC GTCGAACCGT GACCGCCTX ^Aru001 TATGGTACCA ACTTGACCTC GTAAAACCGT GACCXXXXX ^Ama006 TATGGTATTG CTCAGATCTC CTCGAACTGT GACTGTCTX ^Smi165 TATGGCGCCG GTTGGGTTTC GTAAAAATAT GACCXXXXA ^Aga001 TATTATGCTA CTTAGATCTC GTAGAACCGT GACTXXXXX ^Ama018 TGXGGTATTG CTCAGATCTC GTCGAACTGT GACTGTCTX ^Aga002 TATGATGCTA CTTAGATCTC GTAGATCCGT GACTXXXXX 1263 4 3 2 8 66 1 11 8 1 1 1 1 1 5 1 8 1 1 3 2 4 3 1 10 1 1 1 1 25 1 3 2 1 72 2 1 6 12 10 128 P ^Age001 TGCGAGTATG CTACACCACC CAGCCCAAGT GACGAGCGGA ATTAAGTCAA CAGCTTTAGG TCTTTAGTCG TCAGACATGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX ^Adi002 TGCGAGTATG CTACACCACC CAGCCCAAGT GACGAGCGGA AACGGTCGGG GGAGCACTCA CACGGCAATA XXXXXXXXXA TAGCTGGACC TGAGTTGAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX ^Adi001 TGCGAGTATG CTACACCACC CAGCCCAAGT GGTTGTGAXX XTTGGTCGGG GGAGCACTCA CACGGCXXXX XXXXXXXXXA TAGCTGGACC TGAGTTTCCT CGATACAAAA GAXXXXXXXX XXXXXXXX ^Aru127 TGCGAGTATG CTACACCACC CAGGTACGCC CACGGTGCXX XTTAAGTCAA CGAGCACTCA CACGGGXXXX TTGXXXXXXA TAGCTGGACC TGAGACTCCT CGATACAAAT AGAAAGACTX XXXXXXXX ^Aru001 TGCGAGTATG CTACACCGTT AGACCCCGCC AACGAGGGGA TTGAAGTCAG AAAGCACTCA CACGCGGTTA TTGGAACXXA TAGCTGGACC TGAGACGTCT CGGGGXXXXC XXAAACCTXC AGATGXXX ^Ama006 TGCGAGTATG CTATCTTACC CAGCCCAAGC GACGATGCXX XTTAAGCGGG CGGCCACTCA CACGGGXXXX XXXXXXXXXA TAGCTGGACC TATATTTCCT CGATACAAGA AGAACGAATC GXXXXXXX ^Smi165 TGCGAGTACT TCXCACGACC CAACTGAGAC AACAAGCAGC GTTAAATCGG CAATTACTCA CAGXGGGXCA TCGGXAXTXA TAGCTGTGTG XGAGTTGXAX XXXXXXXXXX XXXXXXXXXX XTXXXXXX ^Aga001 TGCCGAAXTG TAACATCACT TXGCCCAAGC GACGGTXCXX XTXACGTGGX TGGCCTTACA GTCGGGXXXX XXXXXXXXXA TAATCAGATT TACCGGACCT XXAXXCXXXX XXXXXXXXXX XXACXGTX ^Ama018 TGAGAACATG CTACCTCATC CAGCCCAAGC GAGGATGCXX XTTAAGCGGG CGGCCTCGCC TTCGGGXXXX XXXXXXXXXA AXGTGXGTCA TTATTATCCT CXATXCAXXA AXAXXGXXXC GXXXXAXX ^Aga002 TACGGAAXTT TAACATCACT TXGCCCAAGC GACGGTXCXX XTXACGTGGX TGGCCTTACA GTCGGGXXXX XXXXXXXXXA TAATCAGATT TACCGGACCT XXAXXCXXXX XXXXXXXXXX XXACXGTX 5031 4 10 3 28 1 2 22 168 1 1 1 1 5 15 6 1 17 1 4 5 19 1 26 1 1 34 3 1 2 1 4 1 1 1 64 2 1 63 3 1 1 1 37 1 2 1 1 2 1 1 1 1 1 8 2 3 1 71 1 1 1 2 4 1 2 1 1 1 3 4 1 1 18 4 1 1 5 11 34 23 3 20 15 13 5 3 1 1 1 1 1 1 1 1 1 1 1 1 11 53 1 11 28 1 20 126 6 1 1 1 1 1 7 1 3 10 1 1 1 2 1 27 16 45 8 210 230 10 27 P ^Age001 CAGGCCAGTG ATAAGGAGAA AXXXXXX ^Adi002 CAGGCCAGTG ATAAGGAGGG GCCACXX ^Adi001 CAGGCCAGTG ATAAGGCAAG GXXXXXX ^Aru127 CAGGCCAGTG TCGGAAAAAG GCCCXTX ^Aru001 CAGGCCAGTA ATGGAAAGAG GCCCXXX ^Ama006 CAGGCCAAAG ATGGAAAAAG GCCCXXX ^Smi165 CAGGTTXGTG ACAAATAAAG GXXXXXG ^Aga001 CAGACCAGTG ATAAGGAGAA GXXXXXX ^Ama018 CAAGCTAGAG ATGGAAAGAG GCTCXXX ^Aga002 CGGGCCAGTG ATAGGGAGAG GCCCXTX 829 2 1 1 25 1 3 1 1 1 3 1 1 1 1 1 3 1 3 1 1 85 1 1 3 9 87 10 19 P ^Age001 AGTCATGTTG GTTTGGGTG ^Adi002 AGTCATGTTG GTTTAAACX ^Adi001 AGTCATGTTG GTTCAAACX ^Aru127 AGTCATGTTA ACCTGGACX ^Aru001 AGTCATGTGG GCCTGGACX ^Ama006 AGTCAAAATG GTCTGAACX ^Smi165 AGTATTGTTG CTTTGGAGX ^Aga001 AGACGTAATG GTCTGAACX ^Ama018 AGTCAAAATG GTCTGAACX ^Aga002 ATACATGATG GTCTGAACX 1639 2 9 43 1 5 1 1 1 7 1 1 1 4 7 1 8 2 6 10 16 P ^Age001 GAGCTGCAAG TGCATC ^Adi002 GAGCTGCAAG TGCGGT ^Adi001 GAGCTGCAAG TGTGGT ^Aru127 GAGCTGTGGC CACAGT ^Aru001 GAGCTGCAGC CACATT ^Ama006 GAGTCACAAG CACAGT ^Smi165 GATCCCCAAA TATAAT ^Aga001 GAGCTGCAAG CACAGT ^Ama018 GAGTCGCGAG CACAGT ^Aga002 GTGCTGCAAG CACAGT 820 1 24 2 2 1 2 1 3 1 3 1 1 5 1 5 10 54 P ^Age001 GCAGCGGAGG TTCCCCCTAC AAGGTGGACT XXXXXXXXXX XXXXXXXXXX XXXX ^Adi002 GCAGCGGAGG TTCCCCCTAC GGCACCAGXX TTGTGGTTTT CAGCGAGTAC GXXX ^Adi001 GCAGCGGAGG TTCCCCCTGT AAGACCAGCC TTGTGGTTXX XXXXXXXXXX XAXX ^Aru127 GCAGCGGAGG TTCCATACAC AACGTGACXX TTGTGTAXTT CAGCGGAGGT AXGX ^Aru001 GCAGCGGAGG TATTCCCCAC AGCGCTACXX TTGTGTAXTT CAGCGAGGGT AXXX ^Ama006 GCAGCGGAAC CTCTCCACAC AACGTGACXX XXXXXXXXTT CAGCGAGGGT AXXX ^Smi165 GCAGCATTGG ATCCCCCTAA ACCGCGACXX TTGCATAXTT CAGTXAGTAT AXXX ^Aga001 GCAAAGGGGG TTCCCCCCAC AACGCTACXX TTTTATAXTT CGXCGAGTGC AXXX ^Ama018 GCGGCGGAGC CTCCCTACAC AACGTGACXX XXXXXXXXTT TAGCGAGGGT AXXX ^Aga002 GTAGAGCAGG TTTCCCCCAC AACGCTACXX TATTATCXTC CAGCGAAGGT AXXX 1543 4 3 1 3 34 1 1 3 1 1 8 1 1 3 1 1 1 4 1 2 1 34 6 3 1 9 2 161 19 80 1 4 2 1 1 1 3 321 1 1 1 3 3 9 1 1 4 1 1 7 96 12 67 10 39 P ^Age001 ACATGTTTAC ATCAGCGCAT TXXXXXXXXX XXXXXXXXX ^Adi002 ACATGTTTAC ATCAGCGTTC GXXXXXXXXX XXXXXXXXX ^Adi001 ACATGTTTAC ATCAGCGCTC GTTAGTTTXX XXXXXXXXX ^Aru127 ACATGTTTAA CCTGXXXCAT GTTCTCAXAA CTXXXXXXX ^Aru001 ACATGTTTAA CCTGGXXCAT GTTCTCAXAX XXGTXXXXX ^Ama006 ACATGTTCGC ACTGXXXCAT GTTCTCAXAA CTXXATXXX ^Smi165 ACATACXTAC XTTTXCTCAT GTGATGXXXX XXXXXXXXX ^Aga001 ATXXGXTTXX AXXXGXXCAC XXXXXXXXXA CCGXCGCGX ^Ama018 ACACGTTCGC ACTGXXXCAT GTTCTCAXAA CTXXATXXX ^Aga002 ATXXGXTTXX AXXXGXXCAT XXXXXXXXXA TCGXCACTX 444 1 397 1 11 3 69 3 4 2 1 43 3 3 2 43 6 1 1 1 2 9 3 5 7 9 3 42 7 62 2 55 3 6 2 1 255 1 3 10 23 P ^Age001 AAGACGACAC CGCGAAGAGA GAX ^Adi002 AAGACGACAC CGCGAAGGAG CXX ^Adi001 AAGACGACAC CGCGAATGAG CXX ^Aru127 AAGACGACAC CTTAGGGAAG CXX ^Aru001 AAGACGACAC TGCAGGGAAG CXX ^Ama006 AAGACGACGT CGCGAGGAAG CXX ^Smi165 AAGATATTAT TGTGCGGAGG CXG ^Aga001 AAGGCGATAC CGCGAGGAAG CXX ^Ama018 AAAACAGCAC CGCGAGGAAG CXX ^Aga002 AGGACGACAC CGCGAAGAAA CXX 1004 1 5 4 41 1 1 2 1 1 1 2 2 5 1 1 1 2 1 1 8 9 3 10 29 P ^Age001 TTAAAAGTGA TACCGTATCC CCXXXXXXX ^Adi002 TTAAAAGTGA TACCGTTCTT AXTTTGAXX ^Adi001 TTAAAAGTGA TACTAXACTT XXTTTAXXX ^Aru127 TTAAAAGTGA CTTCGXATCT XXTTTAXXX ^Aru001 TTAAAAGTGA TTTCGXATCT XXTTTAXXX ^Ama006 TTAAAAGCAT TACCGXATCT XXTTAAXXX ^Smi165 TTAAGGATAG TACCAXATTT XXTCTAXXX ^Aga001 TTAGAGATGA TATCGXATCT XXTTTAXTX ^Ama018 TTGAAAGCAA TACCGXATCT XXTTAAXXX ^Aga002 TCAGAAATGA TACCGXATCT XXTTTAXXX 3325 3 1 7 82 1 1 9 3 1 1 9 1 2 1 58 3 8 2 17 59 84 286 6 1 1 3 9 237 10 37 P ^Age001 TCAAAAGGGG GCTCAGGACC TCCCCTGGGC CAATAXX ^Adi002 TCAAAAGGGG GCTCAGGACC TCCCCTTCAG AGGCXTX ^Adi001 TCAAAAGGGG GCTCAGGACC TCCCCGGCAG AGGCXTX ^Aru127 TCAAAAGGGG GCTCAGGGTT CTATATGGGC CAGCXTX ^Aru001 TCAAAAGGGG GCCTGTCACC TCCTATGGGC CAGCXTX ^Ama006 TCAAAAGGGA CGTCAGGACC TTACATGGGC CGGCXTX ^Smi165 TCAAGGXXXG XXTCGCXACT XCXCXXXGAT XAGXXXX ^Aga001 TCAGAAGGCG GCTTAGGACC TCCTATGGGC CAGCXTX ^Ama018 TCGAAAGAGA GGTCAGGATC TTACATGGGC CGGCXTX ^Aga002 TGAAAGGGCG GCTTAGGACC TCCTATGGGC CAGCXTX 849 8 1 3 40 1 671 3 4 2 1 1 5 1 2 1 9 8 1 2 4 1 2 1 2 1 1 3 2 1 8 1 12 13 9 6 4 10 49 P ^Age001 CTGGGTGTGT TACCCGGTTG GGTATGGATC XXXXXXXXXX XXXXXXXXX ^Adi002 CTGGGTGTGT TACCCGGTAC AACTACTXXX TTAATCATCT ACCGATXXX ^Adi001 CTGGGTGTGT TACCCGGCTC AACTACTXXX TTAATCATCT ACCGAGXXX ^Aru127 CTGGGTGTGT TGTTTAATTG GACTATCXXX TTAATCATTC GXXXXXXXX ^Aru001 CTGGGTGTGA CATTTAATTG GACTATCXXX TTAATCATCC GXXXXXXXX ^Ama006 CTGGGTCCCT TACCCAATTG GACTACCXXX TTAATCATCT GCCGGGXXX ^Smi165 CTGGAXGTGT XACTXAXTTG AGCCXTCACX TTAAGTXXCX XCCAGGCXX ^Aga001 CTAAGTGTCT TACCCAATTG GACTACCXXX TTACTTACCT GCCGAGXXX ^Ama018 CCGGGTGCCT TACCCAATTG GACTACCXXX TTGATCATCT GCAGAGXXX ^Aga002 CTGAGTGTCT TACCCAATTG GACTACCXXX TCAATCACCT GCCGAGXAX 2428 4 1 7 55 191 4 1 2 5 2 8 7 4 1 1 1 1 3 10 5 3 45 3 33 1 1 537 56 33 156 1 1 10 3 1 111 1 1 1 1 125 2 3 1 1 1675 3 881 10 45 P ^Age001 AACTGTAAGC GACGAGTGGT XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 AACTGTAAGC GACGCAGAXX TCACAACCGG AXXXXXXXXX XXXXX ^Adi001 AACTGTAAGC GACACAGAXX TCACAACCGG TXXXXXXXXX XXXXX ^Aru127 AACTGTAAAT TGTGAAGAXX TCACAACTAA AXXXXXXXXX XXXXX ^Aru001 AACTGTAGGC GGTGAAGAXX TCACAGXTAA AXXXXXXXXX XXXXX ^Ama006 AACTGTGAGC GAGGAAGAXX TCAAGACCGA ACCCAATTAC AACXX ^Smi165 AACGAXAAGC XACXAAAXGX TCTCAACCAA ACCCTGCXXX XXXXX ^Aga001 AATTATAAGC GACGAAGAXX TGACGACCGA AXXXXXXXXX XXXXX ^Ama018 AACTGTGAGT GACGAAGAXX TCAAGACCGA AXXXXXXTAC GXXXX ^Aga002 ATTTATAAGC GACGAAGAXX TGACGACCGA ACTXAGXTTX XAXAX 1245 1 3 32 1 68 2 2 1 1 1 2 1 1 3 9 1 3 1 299 264 1 17 1 1 3 3 1 1 3 2 12 4 53 1 2 3 4 2 133 2 1 47 52 12 10 12 P ^Age001 TACCGACTCC AX ^Adi002 TACCGACCTT CX ^Adi001 TACCGAACTT CX ^Aru127 TACCGGCTCC CX ^Aru001 TACCGACTCC CX ^Ama006 TACTAACTCC CX ^Smi165 TAGCGACTTT CX ^Aga001 TCCCGACTCC CX ^Ama018 TACCAACTCC CX ^Aga002 TACCGACTCA CX 1013 2 14 2 6 2 1 5 1 1 6 342 10 28 P ^Age001 GTTAGTTCTG GTGTAGCTGG CGCAXXXX ^Adi002 GTTAGTTCTG GTGTAGTAAT AATTXXXX ^Adi001 GTTAGTTCTG GTGTGACAAT AATTTATX ^Aru127 GTTAGTTCTG GGACAACTGG AATTTAGX ^Aru001 GTTAGTTCTG TTACAACTGG AATTTAGX ^Ama006 GTTAGTTTCA GTGCAACTGT CGTTTGGX ^Smi165 GTTAGAACTG GTGCAGCTAT CTCTXXXX ^Aga001 GTTCATTCTA GTGCAGCTGT CGTTXXXX ^Ama018 GTCAGTCCCA GTGCAACTGT CGTTTGGX ^Aga002 GGTAATTCTA GTGCAGCTGT CGTTXXXX 1315 2 1 3 2 28 1 5 2 3 2 2 7 1 2 2 1 6 1 1 2 1 3 14 82 1 1 9 10 15 P ^Age001 TGAGCAATAG ACTTX ^Adi002 TGAGCAATAG TTAGX ^Adi001 TGAGCAATAA TTAGX ^Aru127 TGAGCAGCGG ACTGX ^Aru001 TGAGCTACGG ACTGX ^Ama006 TGAAAAATGG ACAGX ^Smi165 TGCGCAATAG ATAGX ^Aga001 TAAGCAATGG ACAGX ^Ama018 TGAGAAATGG ACAGX ^Aga002 TAAGCAATGG ACAGX 868 5 20 3 2 2 2 5 3 1 7 1 1 10 3 10 28 P ^Age001 GGCATTTATT CCTAGCGAXX XXXXXXXX ^Adi002 GGCATTTATT CCTATTAXXX XXXXXXXX ^Adi001 GGCATTTATT CCTATTAXCG GAATXXXX ^Aru127 GGCATTTATT CCAGGCAXXX XXXXXXXX ^Aru001 GGCATTTATT CTTGGCAXXX XXXXXXXX ^Ama006 GGCATTCGCG XCTAGCAXXX XXXXXXXX ^Smi165 GGCACCTACC XTTAGCAXCG AGGAACCX ^Aga001 GGAGTCTATT CCTAGTAXCG GAGCXXXX ^Ama018 GGCATTTGCG XCTAGCAXXX XXXXXXXX ^Aga002 GTCGTCTATT CCTAGTAXCA GGGTATXX 1042 3 1 3 26 1 1 4 1 1 3 1 3 1 6 1 9 3 15 1 2 1 1 1 105 12 570 117 10 49 P ^Age001 TTTTCCATTG TAGTGACCAG GTGGGAAGCA GTAAATGCAT ATGXXXXXX ^Adi002 TTTTCCATTG TAGTGACCAG GTGGGAAATG AAGGTCATTG TXXATTTTX ^Adi001 TTTTCCATTG TAGTGACCAG GTGGGGGGCG AAGGTCATTG GXXATTGXX ^Aru127 TTTTCCATTG TAGTGGTTGA CCAAAAAGCA GTAGTCATGA GTXATCTXX ^Aru001 TTTTCCATTG TAACCACTGA CCAAAAAGCA GTAGTCATGA GTXXXXXXX ^Ama006 TTTTCCACCA CGGTGACCAG GTAATAAGCA GTGAATATAG GTXATTTXX ^Smi165 TTTTTTXTTG CCGCAATCGA CAGAAAGGTA ACAATCGTTG GTXXXXXXX ^Aga001 TTTCCCATTA CAGTGACCAG CTAATAAGCA GTGGACATAG GTXAXTTXX ^Ama018 TTCTCTATCA CGGTGACCAA GTAATAAGCA GTGAATATAG GTXATTTXX ^Aga002 TCTCCCATTA CAGTGACCAG CTAATAAGCA GTGGACATAG GTXATTTXX 6583 2 5 22 126 1 3 3 11 9 4 1 4 1 1 3 1 41 14 1 1 2 1 7 2 28 2 2 1 30 11 1 1 1 1 1 4 42 1 2 1 3 3 58 3 1 1 24 12 10 27 P ^Age001 CTGGCAAGCT GTCCCAAGAT TTAGGTT ^Adi002 CTGGCAAGCT GTCCCTGAGC CCTATCX ^Adi001 CTGGCAAGCT GTCCAAGAGC CCTATCX ^Aru127 CTGGCAAGCT GCTACAAGAT TTAATCT ^Aru001 CTGGCAAGCT ATTACAAGAT TCTATCX ^Ama006 CTGGCTGTXX GTCCCAAGAC XXXATCX ^Smi165 CTGATAAGCC GTCCCAAGGT TTTGTGX ^Aga001 CTAGTAATCT GTCTCAAAAT TCTATCX ^Ama018 CCGGCAGGCT GTCCCAAGAC TTAATCT ^Aga002 CTAGCAATCT GTCTCAAAAT TCTATCX 1437 2 3 43 1 4 4 1 41 2 1 2 3 1 2 1 2 2 1 1 1 1 3 1 8 1 78 10 58 P ^Age001 TCGTTGCCCC CCTGTCCAGT ACTCGCTAGG ATACCGGTGX XXXXXXXXXX XXXXXXXX ^Adi002 TCGTTGCCCC CCTGTCCAGT ACTTATGGAT GCGATTAAXA TGCTAACTGX XXXXXXXX ^Adi001 TCGTTGCCCC CCTGTCCAGT ACCTATGGAT GCGATTAGXA TGCAXXXXXC XXXXXXXX ^Aru127 TCGTTGCCCC CCTGTCCAAC GACCGCGGAT GCGATTCGXA TGATAACCXX XXXXXXXX ^Aru001 TCGTTGCCTT TTCTGTAXGT GXTCATTAGG GCGAXXCTXA TXXTAACCXX ACXXXXXX ^Ama006 TCGTTGCTCC CCTGTTTAGT ACTCGCGGAT ACGATTAGXA TGTTAACTXX AXTGXXXX ^Smi165 TCGTTAGCCC CTCACTGAGT ACTCGCTGAA GTGTCAGGXA XXXXXXXXXX XXXXAXXX ^Aga001 TCGTGGTCCC CCTGTTCAGC ACTCGTTAAT GCGATTATXA TGATAXXXXX XXXXXCXX ^Ama018 TCCXTGCCCT XCCTXTAAGT ACTCACGGGT GCGATTAGXA TGCTAACTXX XXXXXXAX ^Aga002 TTGTGGTCCC CCTGTTCAGC ACTCGTGGAT GCGATTAGXA TGATAATCXX AXTXXXXX 1460 1 8 8 5 31 1 2 9 58 3 1 11 2 1 1 1 11 3 1 2 1 1 7 1 1 1 2 1 1 1 11 24 1 12 1 1 1 13 13 27 17 1 3 6 31 1 1 6 3 7 126 5 3 6 6 12 54 10 27 P ^Age001 GCCCTCGGGA TCCCTTTTGT GAAGTXX ^Adi002 GCCCTCGGGA TCCCTTTTGC AGXXXXX ^Adi001 GCCCTCGGGA TCCCTTTTAC AGXXXXX ^Aru127 GCCCTCGGGA CXXXXXXXGT AGAXXXX ^Aru001 GCCCTCGGGG CCCCTTTTGT AGAXXXX ^Ama006 GCCCTCAAXA TCCXXXXXGT AGAXXXX ^Smi165 GCCCTTGGGA TCTCTTCCGT GGAGGTX ^Aga001 GCCTCCGAGA TCCCCXTXGT AGAXXXX ^Ama018 GCGCTCAAXA TCCXXXXXGT AGAXXXX ^Aga002 GGCCCCGAGA TCCCCXTXGT AGAXXXX 1387 3 1 3 4 17 4 1 6 2 4 5 1 16 1 2 1 1 1 1 2 7 6 76 2 162 159 10 34 P ^Age001 AATTGGAGAA CCGATGTATA GCATACTGGT ACXX ^Adi002 AATTGGAGAA CCGATGTATA GCATTTCTTG CAAX ^Adi001 AATTGGAGAA CCGATGTATA GGGCACCTTG CTAX ^Aru127 AATTGGAGAA CCGATGTGCC ACGCATTTTG CAAX ^Aru001 AATTGGAGAA CTACGAGACC ACACATTGTG CAAX ^Ama006 AATTGGAGCG GCACGACATC ACACATTGTG CAAX ^Smi165 AATTGTGTAA CCGATATATA ACACATTTGG CAAX ^Aga001 AATGTGAGAA GCGCAACATC ACGCACTGTT CCAX ^Ama018 AAATGGATAG GCACGACATC ACACATTGTG CAAX ^Aga002 AGTTTGCGAA GCGCAACATC ACACATTGTG CAAX 1419 1 2 2 3 34 1 1 1 4 3 3 2 5 1 1 1 9 2 5 6 10 1 1 4 8 1 1 1 2 12 1 3 12 10 25 P ^Age001 ACTCATCTAT CACACGAGTT GGTCX ^Adi002 ACTCATCTAT CACACGGACC TCAXX ^Adi001 ACTCATCTAT CACACGGACC TCAXX ^Aru127 ACTCATCTAT CAGGGAAGCC TCAXX ^Aru001 ACTCATCTAT CGCGGAAGTC TCAXX ^Ama006 ACTCATCCCA TACACAAGCT TCGXX ^Smi165 ACTAGGXTAA XACAXAACXT TXXXX ^Aga001 ACCCAGCTCA CACACAAGCT TCGXX ^Ama018 AATCGGCTCA TACACAAGCT TCGXX ^Aga002 ACCCAGCTCA CACACAAGCT TCGXX 785 3 2 12 1 1 174 1 3 8 3 2 1 1 1 1 1 1 1 2 6 6 1 3 24 10 68 P ^Age001 GGATGACGAG GCCCACATCA TTTATAGTCC TTCTCTTTTC TAATCATATA GCTGAAXXXX XXXXXXXX ^Adi002 GGATGACGAG GCCCACATCA TTTATAGTCC CCTCACCACT CGCCTTGGCC AXXXXXTTAG AAGGGXXX ^Adi001 GGATGACGAG GCCCACATCA TTTATAACTT TTTCACCACT CGCCTTGGCC AXXXXXTTAG AAGGAXXX ^Aru127 GGATGACGAG GCCCATGCTG CACCXXGTCC TTCTCTTTTC TACCTTGGCT XCAXXXTTAG TGTXAXXX ^Aru001 GGATGACGAG GCCAGCATCA CACCTAGTCA TTCTCTTACT CGCCTTGGGC AXXXXXTTAA AGTGAXXX ^Ama006 GGATGACGAG TTTCACATTG TTCCXXGTTC TTCTCTCTTT CGCCTTGGCT XCAXXXTTTA AATXAGXX ^Smi165 GGATGGGATX GCTCXCAXCG TTTCTXGCCT TXCTCGTTCC CXATTTAXXT XCAGGXXXXX XXXXXXCX ^Aga001 GGACTAGAGG GCCCACTTTA TGCCXAGTCC TTCTTTTACT CGACCTGGCC AXXXXXTAAA AATXAXXX ^Ama018 GGGTGACGAG GTCCACATCG TTCCTXGTCC TTCGCTCTTC CGCCTTGGCT XCAXXXTTTA AATGAXXX ^Aga002 GTATTACAGG GCCCACTTTA TGCCTAGTCC TTCTTTTACT CGCCTTGGCC AXXXXXTAAA AATGAXXX 4580 4 7 5 8 143 6 2 2 111 5 1 1 1 1 2 1 2 12 11 8 1 1 1 2 3 1 1 1 1 2 1 9 1 1 1 1 14 1 1 2 1 5 4 2 39 3 92 1 9 2 2 3 575 22 683 482 1 1 1 7 2 3 1 1 1089 741 2622 10 28 P ^Age001 ATCAGAGGAG CAGACACGGT AAAATTAT ^Adi002 ATCAGAGGAG CAGACACACC GGGGCCGA ^Adi001 ATCAGAGGAG CAGACATGCC GGGGCCGA ^Aru127 ATCAGAGGAG CAAGTGCGGT AAAGCCGC ^Aru001 ATCAGAGGAG CTGATTCGGT AACGCCGC ^Ama006 ATCAGAGTGC TAGACACGGT GTAACCGT ^Smi165 ATCATGAGAG TAGGCACGGC GAAGCCTC ^Aga001 ATTXGAAGAC CAGACACGGT GAAATCGT ^Ama018 ACCAGCGGGC CAGACACGGT GTAACCGT ^Aga002 ATTXGAAGAC CAGACACGGT GAAATCGT 2416 5 3 3 53 1 1 7 2 1 1 6 10 1 3 1 4 3 14 1 1 1 1 5 1 15 1 1 10 31 P ^Age001 CTACAGGGCC GCCACGAGGC GCTCAGGTTA T ^Adi002 CTACAGGGCC GCCACGAGGC GCCTGACCCG A ^Adi001 CTACAGGGCC GCCACGAGGC GTTCGACCCG A ^Aru127 CTACAGGGCC GCCATCGTAT XCTCAGGCCG C ^Aru001 CTACAGGGCC GCCCCGGTAT GCTCAGGCCG C ^Ama006 CTACAGGGTT ATTACTAGAT XCTCAGGTCG C ^Smi165 CTACAAATCC GTTACGAAGT GCTCAATCTG C ^Aga001 CTATGGGGCC ACCACTAGAT GCTTAGGCCG C ^Ama018 CTCCAGGTCT ACTACTAGAT XCTCAGGTCG C ^Aga002 CCACGGAACC GCCACGAGAT GCTTAGGCCG C 1496 2 2 5 2 45 1 1 2 4 1 1 1 3 1 1 1 1 3 1 6 3 2 1 12 1 1 1 1 11 1 10 23 P ^Age001 ACAGGCCTTA AGCTCCGATC GXX ^Adi002 ACAGGCCTTA AGCTCTAGCT XXX ^Adi001 ACAGGCCTTA AGACXTAGCT XXX ^Aru127 ACAGGCTAXX XXCTXCGGCT XXX ^Aru001 ACAGGCTATA AACTXCGGCT XXX ^Ama006 ACAGGTCTTA AGCTXCGACT XXX ^Smi165 ACAGTCCCTA GGCACCAATT GCX ^Aga001 ACAAGCCTTG AGCTCCGGCT XXX ^Ama018 ACGGGTCTTA AGCTXCGGCT XXX ^Aga002 ATAAGCCTTG AGCTCCGACT XXX 1253 2 1 1 30 3 2 1 37 1 3 1 3 1 3 4 1 1 4 7 3 18 102 10 45 P ^Age001 GTACACCGAC AGTGGGACGT CCCCCACGTA TACGTTCGAT CTCXX ^Adi002 GTACACCGAC AGTGGGACGT CCCGTGGACG GGTACCGACA ACXXX ^Adi001 GTACACCGAC AGTGGGACGT CCACTGGACG GGTACCGACA AAXXX ^Aru127 GTACACCGAC AGTGGGAGAC GACCCACGTA TATACCGACA TCXXX ^Aru001 GTACACCGAC GAGAAXXCGT GACCCACGCG GGTACCGACA ACXXX ^Ama006 GTACACCGAA AGTGGGACAC CACCCACATA TACACCGACA TCXXX ^Smi165 GTACACCGTC AGTAAGCCGT CTCCCGAATA GGTGCCGTTC CTCCX ^Aga001 GTACAATAAC AGCGAGACGT CCCCCACGTG TGTGTCAGCC CTCXX ^Ama018 GTCACCCGAA AGTGGGACAA CACCCACATT TACACCGACA TCXXX ^Aga002 GCAAGCTTAC AACGAGACGA CCCCCACGTA TATGTCAGCC CTCXX 980 7 8 4 2 4 9 1 26 6 1 1 1 5 1 1 2 2 1 1 5 1 1 3 4 1 1 1 4 1 2 1 2 33 6 9 1 2 1 2 1 1 6 6 1123 10 45 P ^Age001 TGCTCACCGG CTGCTTATGG CATXXXXXXX XXXXXXXXXX XXXXX ^Adi002 TGCTCACCGG CTGCTAGCAA TGGTGTTGGT AAACTACCCA GTTTX ^Adi001 TGCTCACCGG CTGCTTGCAA TGGTGTTGGT AAACTACCCC AAGAX ^Aru127 TGCTCACCGG CCATCTATGA TGGTGTTGGT AAACTGTTTA GAGAX ^Aru001 TGCTCACCGA TTGTCTATGG CGGTGTTGGT AAGTCACCTA GAGAX ^Ama006 TGCTCGTGCG CTGCTTATAG CGGTGTTGAC CGATCACTTA GAGGX ^Smi165 TGCCTACCCG TTCCTTACAG TAGTGTGCGT CGACTACCTA GAGGX ^Aga001 TTTTTACTGG CTGCCTATGG CAGTGTTGGT AAACCATCTA GAGAX ^Ama018 TGCTCATGGG CTGCTTATAG CGGTGGTAGC AGATCACTTA GTGAX ^Aga002 TGTTTACTGG CTGCCTATGG CAGTTTTGGT AAACCATCTA AAGAX 1366 1 6 29 1 2 8 1 1 3 1 3 1 7 2 2 7 1 1 1 1 1 12 477 1 3 23 2 1 6 5 1 3 1 1 4 1 1 4 1 6 1 3 1 178 10 44 P ^Age001 TATAACAGTG ATCCGCGCCT ATGAGCACGA XXXXXXXXXX XXXX ^Adi002 TATAACAGTG ATCCGCGCTC CCAGATTGCX AGTGCAACGC XXXX ^Adi001 TATAACAGTG ATCCGTAGCC CCAGATTGCX AGTGCAACGT XXXX ^Aru127 TATAACAGTG ATCTACGTCT ATAGATTGCX AGTGCGGTAT XXXX ^Aru001 TATAACAGTG ATTCACGCCT ATAGATTGCX AGTGCGGTAT XXXX ^Ama006 TATAGTGACC TXCCGCGCCT CXGAATTTXX AGTGGAGTAT AACX ^Smi165 TATGACAGCA GXCCGCACTT CXGAGTTTXX AGAACAATAT AGTX ^Aga001 TAGAACGACG AXCCGCGCCT CXGAATTTXX AGTACAGTCT AATX ^Ama018 TGTAATAATG TTCCGCGCCT CTGGATCGCX AATGCAGTAT XXXX ^Aga002 TAGAACGACG AXCCGCGCCT CXGAATTTXX AGTACAGTCT AATX 783 3 2 34 2 2 1 1 23 1 1 15 3 1 1 1 1 1 1 2 1 2 1 15 1 16 1 10 13 150 232 1 4 1 1 1 1 2 1 2 94 1 1 3 10 49 P ^Age001 CCCCAAGCGA ACTGTCCGAA CCACGAATAA GAAAAAAATG GTATTXXXX ^Adi002 CCCCAAGCGA ACTGTCCGAA CCACGAATAA AGGCGGGGCA ACXXXTXXX ^Adi001 CCCCAAGCGA ACTGTCCGAA CCACGAATAG GGGCGGGGCA ACXXXTXXX ^Aru127 CCCCAAGCGA ACTGTCTTGG TTCXXXXXXA GAAAGGGGCA XXAXXXXXX ^Aru001 CCCCAAGCGA ACTGCTCTGG TTCCGAAGXA GAAAGGGGCA AXATXXAXX ^Ama006 CCCCAAGCGA GTCTTCCGGG TTCCGAGTXA GAAAGGGGCA AXAXXXXXX ^Smi165 CCCCAGAGAX ACCATACGAA CTCCGGATXA AAGGAGGGGX ATAXTXXAX ^Aga001 CCCTGAGGTA ACTGTCCGAG TCCCTAATXA GAAAGAGTCA AXAXXXXXX ^Ama018 CCGCAAGCGA ATTTTCCGGG TTCCGAGTXA GAAAGGGGCA AXAXXXXXX ^Aga002 CTCCGAAGTA ACTGTCCGAA TCCCTAATXA GAAAGAGTCA AXAXXXXXX 4534 4 6 6 10 191 1 2 1 2 1 6 1 1 4 2 3 3 6 1 2 1 2 197 2 10 2 1 1 4 1 15 3 1 12 1 38 1 2 1 1 1 3 12 1 1 3 259 1175 10 40 P ^Age001 GTCTATCCAG CCGTGTCTAG ACCXXXXXXX XXXXXXXXXX ^Adi002 GTCTATCCAG CCGTGTACGA GTGCCCACTX XXXXXXXXXX ^Adi001 GTCTATCCAG CCGTGCCCGA GTGXXXXXXX XXXXXXXXXX ^Aru127 GTCTATCCAG CTAATTCTAA GTGCCCCXXX XXXXXXXXXX ^Aru001 GTCTATCTTA TTAATTCTAA GTAXXXXXXX XXXXXXXXXX ^Ama006 GTCTACXCAA TCAGXTCTAG GTGCCCCCTT AGCATXXXXX ^Smi165 GTCCXTCCGG TCTAATCTGT ATGCCTTCGT GTAXXGATXX ^Aga001 GTTTATCCAA ACAAGTCTAG GTGCCCCXXX XXXXXXXXXX ^Ama018 GCCTACXCAA TCAGXTCTAG GTGCTCCCTT ATTACGGXTX ^Aga002 GTTTATCCAA CCAAGTCTAG GTGCCCCXXX XXXXXXXXXX 1010 1 1 42 1 1 17 3 1 1 1 5 1 1 1 4 1 2 1 1 2 5 1 85 1 87 1 1 2 156 138 1 1 282 4 6 6 344 9 182 10 52 P ^Age001 ACAACACGTA CGGGACTGCT ATATGAGGAG CTGTATGTAA TCCAGCGTGT XX ^Adi002 ACAACACGTA CGGGACTGCT ATACAGCACT TCAGCAAXXX XXXXXXXXXX CX ^Adi001 ACAACACGTA CGGGACTGCT ATGTGACACT TCAGCATXXX XXXXXXXXXX CX ^Aru127 ACAACACGTA CGGGACCAGC GAATGGGGAG TCAGTGGTAA TCCGAATGAX CX ^Aru001 ACAACACGTA CGGGCTTAGC GAATGGGGAA TCAGTGGTAX XXXGXXXXXX CX ^Ama006 ACAACACGTA TACAACTGCT GAATGAGGAG CCAGCGGTAA TCTGGATGAX CX ^Smi165 ACAACTTACG CGGAATTGGA ACATCTGGGA CTAACGGTTA CXCGGCTGCX CX ^Aga001 ACAGAACAGT CGCGACTGCT GAATGAGAAG CCAGCGGTAX XXXGXXXXXX CX ^Ama018 ACTACACGTA CACAACTGCT GAATGAGGAG CCAGCGGTAA TCTGGATAAX CX ^Aga002 ATAAAATATT CGCGACTGCT GAATGAGAAG CCAGCGGTAX XXXGXXXXXX CX 4244 2 1 1 18 186 1 3 1 1 4 10 3 1 7 1 6 20 1 1 2 1 5 9 1 1 25 1 1 1 1 5 55 6 1 1 1 12 2 431 7 3 2 1 1 5 24 1 3 9 3 195 10 87 P ^Age001 ATATACAATA AGCGCAGATG GCCTGAGATG CCCCCCAGGT TGATAGGGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX ^Adi002 ATATACAATA AGCGCAGATG GCTAACATGA TTTTTTTTTX XXXXXXXXGG GCATTTAATA TCATGCATGG TTTTATCCAG XXXXXXX ^Adi001 ATATACAATA AGCGCAGATG GTCAACATGA TTTTTTTTTT AXXXXXXXGG GCATTTAATA TCATGCATGG TTTTGCAGXX XXXXXXX ^Aru127 ATATACAATA AGCGCAGACA XCCTGAGAGA TTTTTTTTCT AGAAXXXXGG GCATTTAATA TCACCACGTA GXXXACAGXX XXXXXXX ^Aru001 ATATACAATA AGCGCAGACA GCCTGAGAGA TTTTTTTTCT AGTAXXXXGG GCATTTAATA TCXTGACGTA GXXXACAGXX XXXXXXX ^Ama006 ATATACAATA AGCGCGACTG GCCTGAGAGA TTTTTTTTCT AGATAAXXGG GCATTTAATA TTATGCATTA GTTXACAGAX TATTTXX ^Smi165 ATATACAATA ACTXXAGCTG GCCTGAAGTG CCTTTTGXGT AGATXAGCGG GCATTCGGXX XXATXCAXTX XTCXXCGXAX TACXXGX ^Aga001 ATATGGCXXX XGTGGAGATA GCCTACGATA TGCTTGTTCT AXXXXXXXGG AAGCXTGTTG XCXTGCCTTA AXXXAAAGAG TXXXXXX ^Ama018 ATGXACXATA XGCGCAAATG GCCTGXGAGA GTTTXXTTCX XGATXXXXGA GCCAGTAATA TTATGCATTA GTTXACAGAX TXXTXXX ^Aga002 ACATAGAAAX AGCGGAGATA GCCTAAGATA TGCTTTTTCT ATATXXXXGG GAACTTAATG XCXTGCCTTA AXXXACAGAG TXXXXXX 974 2 1 2 1 2 1 3 1 1 1 27 1 100 1 1 3 1 4 1 1 1 1 5 1 2 2 2 1 72 1 1 2 9 2 2 5 1 1 1 1 1 1 1 1 2 60 6 102 4 3 1 1 1 1 7 1 2 282 4 3 1 1 1 1 1 1 2 2 6 1 4 1 3 1 1 1 1 2 9 2 1 1 2 1 21 3 10 45 P ^Age001 ATCTGTCCCT CGTAACGGTC GGGTGAGCAC CACTAGGGGA CCTXX ^Adi002 ATCTGTCCCT CGTAACGGTC GGGTGCATCT TTGCGAATCX XXXXX ^Adi001 ATCTGTCCCT CGTAACGGTC GGGCTAATCT TTGCGAATCX XXXXX ^Aru127 ATCTGTCCCT CGTAACGGCA CAATGAGCAC CACTAAATCA TAXXX ^Aru001 ATCTGTCCCT CGTAACGATA CAATGAGCAC CACTAAATCX XXXXX ^Ama006 ATCTGTCCCC AACCGGCGTC GGATCAGCAC TTGCTGATCA TAXXX ^Smi165 ATCTGCTTTT CGTAGGAGTC GCATGAGCAT CTGCAAGTTA CATXX ^Aga001 ATCGATCTGT CGTCACGGTC CGATGAGTCC CACCAGATCA TATXX ^Ama018 ATATGTCCCT CACCGGCGTC GGATCAGCAC TTGCTGATCA TAXTX ^Aga002 ACCTATTCCT AGCCAGCGTC GGATGAGCCC CTTCAGATTA TATXX 3882 2 7 10 5 113 1 1 1 3 1 3 10 1 1 2 1 2 1 6 1 1 2 10 1 12 16 1 1 2 1 5 1 8 1 1 2 20 1 4 1 1 3 3 549 10 92 P ^Age001 GTCTCACTAA ACAAGGTTTA ACCGTTATTA GGAGACGGCT GCTGTGTACG GCATATAACG CATAATCTTX XXXXXXXXXX XXXXXXXXXX XX ^Adi002 GTCTCACTAA ACAAGGTTTA ACCGTTATTA GGAGGTAAGG ATCAACGTGA ATGGTGTCTA AXXXXXXXXA TTATGGGCGG TCTXXXXXXX XX ^Adi001 GTCTCACTAA ACAAGGTTTA ACCGTTATTC AACCACGGCG ATCAACGTGA ATGGTGTGAT GATGTAXXXA TTATGGTACA ATAACTGXXX XX ^Aru127 GTCTCACTAA ACAAGGTTTG TTGTCAGCXA GGTXACGGXT GCTGTCGTGA ATGGGXXATX XATATAXXXA TTATAXGCGA GAXACAXCXX XX ^Aru001 GTCTCACTAA ACAAGGTTCA ATGTCAGCTA GGAGACGGCT GCTGTGTACA ATGAATAACG CATAATCTXA XXXXXXXXXX XXXXXXXXXX XX ^Ama006 GTCTCACTAA ACCTATGACA ACCGTAGCTA GGAGACGGCT GCTGGGTAAG ATCGATTACG GATATAXXXA TTXXXXGCGG XXXXXXXXTX XX ^Smi165 GTCTCATCGG GXAAGGGCCA ACCTATGATA GAAGACGACT GTAXGGTGAA AGGTATAACG GATAATXXXA TCAXGXGAAA TTXXXXXXXX XX ^Aga001 GTCATXCTAA GCAAGTTTTA XCGGTAGCXA XGXXACXGXT XCTGTCXTAA ATGGXXXXXX XATATAXXXA TTXXXXGCGG XXXAXXXXXX XX ^Ama018 GTTTCACTAC ACATATGACA ACCGTAGCTA GGAGACGGCT GCTGGGTAAA ATCGATTACG GACAAAXXXA TTXXXXGCGG XXXXXXXXXT XX ^Aga002 GCCTTACCTA GCAAATTTCA ACGGTAGCTA GGAGATGACT GCTGTGTACA ATGGATAACG CATAATCXXA TTXXXXGCGG XXXXXXXXXX AX 3047 32 1 1 5 6 97 7 1 1 1 8 4 9 1 1 2 1 1 2 3 10 1 1 1 4 2 1 1 9 1 1 1 2 6 3 1 6 2 5 3 3 1 1 1 4 1 1 1 1 48 3 1 1 3 2 1 1 1 1 1 19 1 1 2 2 12 33 17 17 119 1 3 18 3 6 13 5 2 1 1 2 1 31 751 29 4 18 21 1317 3 32 10 50 P ^Age001 AGTGGAGTTT GGGTACAAAC TGACXXXXXX XXXXXXXXXX XXXXXXXXXX ^Adi002 AGTGGAGTTT GGGTACGGTT CATXTTAGCC TCCATTCAAA GTGGTCAGXX ^Adi001 AGTGGAGTTT GGGTACGGTT CATXTTAGCC TCCATTCAAA GTGGTCAGXX ^Aru127 AGTGGAGTTT GGTGGTAAAT CATXTTAGCC TCCATTCTGG ACATAGCXTX ^Aru001 AGTGGAGTTT GGGGGTAAAT CATXTTAGCC TTACXXXAGG ACATXXXGXX ^Ama006 AGTGGAGCCC CAGTACAAAC CATXTTAGCC GCCATTCAAA GCAATCCXTX ^Smi165 AGTACXXTTT GAGTATAGGC CATXTTAGAT TCATTAXAAA GTAGTXXGXX ^Aga001 AGGGTAATTT CGGTACAGAC CACXTTAACC TTACXXXAAA ACAGXXXGXX ^Ama018 AGTGGAGTCC CAGTACAAAC TATXTTGGCC GCCATTCAAA GCAATCCXTX ^Aga002 ATTGGAGTTC CGGTGTAAAC CATXTCAGCT TCCATTCAAG GCAGTCCGXX 1128 3 4 32 1 8 1 1 3 1 1 1 3 4 2 1 6 1 1 1 1 46 1 714 804 6 1 4 23 1 2 2 11 1 1 7 43 2 1 1 1 1 8 1 1 1 1 3 15 157 10 26 P ^Age001 AAACCTCGTC GCCTCACATG CCXXXX ^Adi002 AAACCTCGTC GCCTGGTXXX XXCCXX ^Adi001 AAACCTCGTC GCACCGTXXX XXXXAX ^Aru127 AAACCTCGTC ATCCCATXXX XXXXXX ^Aru001 AAACCTCGTA GCCTCATATG CXXXXX ^Ama006 AAACCTCAAC GCCTCATXXX XXXXXX ^Smi165 AAACTAXGGC GTCTCATATA TXXXAX ^Aga001 AAGGCTCGTC GCCTCATACG ACXXXX ^Ama018 AAACCACAAC GCCTCATXXX XXXXXX ^Aga002 AGAGCTCGTC GCCTCATACG AXCTXX 1313 1 1 4 42 1 3 6 1 6 8 1 4 1 5 3 7 9 1 1 1 12 11 1 3 111 10 18 P ^Age001 AGGAGGATTC GCTCGXXX ^Adi002 AGGAGGATTC TTCTTXXX ^Adi001 AGGAGGATTC GTCTTXXX ^Aru127 AGGAGGATGT GCTTTAAX ^Aru001 AGGAGGAATC GCTTTXXX ^Ama006 AGGAGTCTTT GCTTTACX ^Smi165 AGGGAGATTT GCCCTXXX ^Aga001 AAAAGGCTTC GCTTTXXX ^Ama018 AGGAAGCTTC GCTTTACX ^Aga002 AGAAGGCTTC GCTTTXXX 722 1 1 18 1 1 2 4 3 1 2 1 1 1 6 191 1 3 10 19 P ^Age001 TGTAATGGCT TCGGCCAGC ^Adi002 TGTAATGGCT TCGATTTXX ^Adi001 TGTAATGGCT TCGATTTXX ^Aru127 TGTAATGTTA CTCGTTTXX ^Aru001 TGTAATAGTA CTCGTTTXX ^Ama006 TGTAGAGGCA CTCGCTTXX ^Smi165 TGTTATGGCT TTTTTTGGT ^Aga001 TTCAATGGCT CTGGTTTXX ^Ama018 TGTAAAGGCA CTCGCTTXX ^Aga002 TGCAATGGCT CTGGTTTXX 1453 1 5 36 1 3 5 2 1 3 1 1 1 1 1 8 1 5 1 10 23 P ^Age001 CCTGAAACTG CGATCAAACC ATA ^Adi002 CCTGAAACTG CGATCAAGTT GCG ^Adi001 CCTGAAACTG CGATCAGGTT GCG ^Aru127 CCTGAAACTG CATCTCAACT GCG ^Aru001 CCTGAAACTG CGTCTCAACT GCG ^Ama006 CCTGAAACTA GGATCAAATT GCG ^Smi165 CCTGTGXXXG XGATXXAGCT CXX ^Aga001 CCTAAGACCG CGATCAAACT GTG ^Ama018 CCCGAAATTG CGACCCAACT GCG ^Aga002 CTTAAGACCG CGATCAAACT GTG 664 1 3 2 16 2 154 1 1 2 2 2 1 2 1 1 1 1 1 3 1 1 1 10 31 P ^Age001 TTGTACGCCA AAGTTTATGG GTTGAGXXXX X ^Adi002 TTGTACGCCA AAGTTTATGA CCCAGXATAG A ^Adi001 TTGTACGCCA AAGTTTAXXA CCCAGXATAG A ^Aru127 TTGTACGCCA GTAXXXXTGG GTTAGXATAG C ^Aru001 TTGTACGCCG ATAXXXXTGG GTTAGXATAC C ^Ama006 TTGTACCTTA AAATTTTTGG GTTAGXATAG C ^Smi165 TTGGGGGCTA AAATAAATAG GCCAGXAAGG C ^Aga001 TTATAGGCCA AAGTTAATGG TTCGGXATGG C ^Ama018 TTGTGCGTTA AAATTTTTGG GTTAGXATAG C ^Aga002 TAATAGGCCA AAGTTAATGG TTCGGXATGG C 1440 1 5 27 1 1 2 2 1 2 5 3 1 12 3 1 2 2 1 2 1 1 1 2 14 81 174 9 1 1 1 10 30 P ^Age001 AAGCGTCATT TTGATAAGAA TAAACCCTGX ^Adi002 AAGCGTCATT TTGATAAGAA CGCTTGTAAC ^Adi001 AAGCGTCATT TTGATAAGAC TGCTTGTATC ^Aru127 AAGCGTCATT TTATCGGAGA TAAATGAGTC ^Aru001 AAGCGTCATT TTGTCGGAGA TAAATGAGTC ^Ama006 AAGCGTCATG CCGATAGACA TAAACGCATC ^Smi165 AAGCGTTGAT TTGATGAAAG TAAGCGCATC ^Aga001 AAGGCXCGGT TCGACAAGAA TAGACGCATC ^Ama018 AACCGTCATT CCGATAGACA TAAACGCATC ^Aga002 ACGCCXCGGT TCGACAAGAA TAAACGCATC 1653 3 4 2 10 6 40 3 1 4 6 1 1 4 1 1 1 1 1 1 3 10 1 1 1 16 1 1 1 3 10 28 P ^Age001 CAGCCGTGGA TGGATCCGAG CAAATXXX ^Adi002 CAGCCGTGGA TGGATCTAGA TGGGCAXX ^Adi001 CAGCCGTGGA TGGATTCAGA TGGGCAXX ^Aru127 CAGCCGTGGA TTAGATCGAG TGGGCAAX ^Aru001 CAGCCGTGGA CGGGATGGAG TGGGCAXX ^Ama006 CAGCCGTAAT TGGATCCGAG CGGGGAXX ^Smi165 CAGCCACGGC TGAACTTGGT TAAGCAXX ^Aga001 CAGTTGGGGA TGGATCTGAG CGGGCAXX ^Ama018 CATCCGTGAA TGGATCCGAG CGGGCAXX ^Aga002 CGGCTGGGGA TGGATCCGAG CAGGCAXX 1474 9 3 3 2 42 1 1 5 1 4 1 1 6 1 1 1 8 1 1 1 1 1 11 1 3 3 19 10 29 P ^Age001 GAAGTTGCAT GCATTATGGT CGAXXXXXX ^Adi002 GAAGTTGCAT GCATTAAAAC AAGACGCGC ^Adi001 GAAGTTGCAT GCATTGTGAC AAGXXXXXX ^Aru127 GAAGTTGCAT GCGCAATGGT AAGACGCAA ^Aru001 GAAGTTGCAT GGACAATGGT CAGXXXXXX ^Ama006 GAAGTTGCAC ACGTAATGGT CAGACCTGA ^Smi165 GAAGACTTTT GCATTATAGC AGGATGTGA ^Aga001 GAATTTGTGT ACGTAATAGT CAGACGCGA ^Ama018 GACGTTCCAC ACGTAATGGT CAGACGTGA ^Aga002 GCAGTCGCAT ACGTAATGGT CAGXXXXXX 1014 2 1 6 36 1 1 1 1 4 1 2 1 3 1 2 3 1 3 1 1 1 5 94 2 2 2 1 1 10 32 P ^Age001 TGTCCAGATC CCGTGAACGG GGCTGGGACC GX ^Adi002 TGTCCAGATC CCGTGAACGG AAACATATTT XC ^Adi001 TGTCCAGATC CCGTGAACGG GAACATATTT XC ^Aru127 TGTCCAGATC CCGTCCGAAA GGCTGGATTT XC ^Aru001 TGTCCAGATC CAACGCGAAA GGCTGGATTT XC ^Ama006 TGTCCAGGCT TCGTGAGAAT GGCTGGATTT XC ^Smi165 TGTCCGAATT TCGTGAACAA GGCTAAGTTG XC ^Aga001 TGTAGATATC TCGCGAACAG GGCCGGGTTT XC ^Ama018 TGCCCAGACT TCGTGAAAAT GGCTGGGTTT XC ^Aga002 TTTCGAGATC CCACGAACAG GGTCGGGTGT XC 1566 3 1 5 8 58 1 4 3 2 1 6 1 1 6 4 1 4 1 1 3 8 1 2 1 1 1 11 1 1 3 3 10 67 P ^Age001 TGTAGGATAA ACGTAACAAC ATATTGAATC TCAGAAAAAG CCATTGATGC GAATTXXXXX XXXXXXX ^Adi002 TGTAGGATAA ACGTAACAAC ATATTACGGT GAGAGGXXXX XXXXXXXXXX XXXXXAXXXX XXXXXXX ^Adi001 TGTAGGATAA ACGTGGXXXX XXXXXGCGGT GXXXXXXXXX XXXXXXXXXX XXXXXAXXXX XXXXXXX ^Aru127 TGTAGGATAA ACACAGCAAC AGTCAGAATT GCAGGTAAAG CCATTGAAAG ACGAGATTGG CGGTXXX ^Aru001 TGTAGGATAA CGACAGCAAC ATACAGAACT GCACGTAAAG CCATTGGTGG ACGAGATXXX XXXXXXX ^Ama006 TGTAGTTCGC ATGCAGCAAC GTACAGAATC GCAGGTAAAG CCTCCXATCC GCGAGATTGG CGAXGXX ^Smi165 TGTTCGATGG ACGCAGCAGX ATATXGAGTC GCCGGTAAAG TXATGGATGC AAGAAATTTX XXXXXGX ^Aga001 TGGACGACGA ACGCAGCGAC ATACAGAATC GCAGGTAAAA CCACTGATGC ACGAGATXXX XXXXXXX ^Ama018 TGTAGGTCGA ACGCAGCAAC GTGCAGAATC GCAGGTAAGG CCACTGATTC ACAAGATTGG GXXXXXX ^Aga002 TTGAGGACGA ACGCAGCGAC ATACAGAATC GCAGGTAGAA CCACTGATGC ACGAGATXXX XXXXXXX 254 1 1 15 1 8 1 1 1 1 2 1 1 2 3 1 101 1 1 2 1 1 1 2 1 5 61 3 1 1 4 83 1 1 1 1 923 1 9 7 48 3 23 2 4 2 4 3 1 7 1 4 1 23 2 6 3 7 5 125 1 17 1 123 5 3 15 10 27 P ^Age001 TTTTTCATTT CTAACTTGCA TXXXXXX ^Adi002 TTTTTCATTT CTAATGCATG XGTAGXX ^Adi001 TTTTTCATTT CCXXTGCATX XGTXXXX ^Aru127 TTTTTCATCC ATAACTCATG XGTAGXX ^Aru001 TTTTTCACTC ATAACTTATG XGTAGXX ^Ama006 TTTTTAGTTT CTAACTTGTG XGTAGGX ^Smi165 TTTTCCATTT CTAACCTGTG XGCAAXX ^Aga001 TTTATCATTT CTAGCTTGTA TGTXXXX ^Ama018 TTATTCGTTT TTAACTCGTG XGTAGXX ^Aga002 TCTATCATTT CTAGCTTGTA TGTXXXX 767 1 1 2 23 3 1 1 2 6 1 1 6 1 7 1 1 3 4 6 8 87 3 39 2 6 366 10 27 P ^Age001 GATTATCAAT CGAATAAACA TTTACAX ^Adi002 GATTATCAAT CGAATAAACA TTTATTX ^Adi001 GATTATCAAT CGAATAAACA TTCGTTX ^Aru127 GATTATCAAC TATGCGXXXX XXTACTX ^Aru001 GATTATCAAT TATGCGXXXX XXTGCTX ^Ama006 GATTTCTGGT CGTGCGAAAX XXTACTX ^Smi165 GATCATCGGT CGAGCTAACA AXTACTX ^Aga001 GACTATTAAT CGAACAAACA TTTACTX ^Ama018 GATTACTAGT CATGCGXXXX XXTACTX ^Aga002 GGTTGTCAAT CGAACAAGCA TTTACTX 797 1 3 24 1 1 1 1 1 1 1 1 15 4 2 1 23 1 3 10 2 3 3 1 1 4 6 10 105 P ^Age001 GTCGGGATTG AATGCTCTTA GTTAGCCTGG CTTGTTACAC CAATTTATGG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi002 GTCGGGATTG AATGCTCTTA GTTGCTTCAC GCCTCCGXXX XXXXXXXXXX ATCGTGTCAG CGACACTATX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX ^Adi001 GTCGGGATCA XXXXXXXXXX XXXACTTCAX XXXXXXXCAT XXXXXXXXXX AGTXXXXXXX XXXXXXXXXC AGTGGTTCGT XXXXXXXXXX XXXXXXXXXX XXXXX ^Aru127 GTCGGAGCTA AATGCTCCCG XXXAGCCCAG GCCAXXXCAC XXXXXXXXXX ATTGTGTCGA GCTATXXXXC AGTGGTCTTX ATATCXXXXX XXXXXXXXXX XXXXX ^Aru001 GTCGGGGCTG AATGCGTTTG GTAAGCCCAG GCCTTTGCAC CAATTCGCAX ATCGTGCXAG XXXXXCAXXX XXXXXXXXXX AXXXXATCAA TAGGGXXXXX XXXXX ^Ama006 GTCGCGACTA AATXXTCTTA GCGAGCTCAG GCCTCGGCAC CCXXXTACCG ATCGTTTCAG CGACTTTACC AGCXXXTTXX ATXXXATATC CTXXXTGGAG TTXXX ^Smi165 GTCAGGATTA AXXXXXXTXX XXXAGTCTAX GXXTXXXCAC XXACXXXXXX ATCGCGXXAA XXXXXXXXXC AATGAXTTXX XTACXXXXXX XXXXXXXXXX XXAXX ^Aga001 GTGGGGACTG AAAGTTTTTA GTCAGCTCAG GCGTTTGCCC CAXXXTGCAX ATCGTGACAG CGCTTCAACX XXXXXXXXXX AXXXXATCAA CGGGATGTGX XXXGX ^Ama018 GTCGCGACTA AXXXXXXTXX XXXAGCTCAX GXXTXXXCAC XXXXXXXXXX ATCGTTXCAG CAACTXXACC AGCXXXTTXX XTXXXXXXXX XXXXXXXXXX XXXXX ^Aga002 GCCGGGACTA AATXXTCTTA XXXAGCTCAG GCCTXXXCCC CCXXXTACCX ATCGTGTCAG CGATTTTACC CGTXXXTTXX ATXXXAACTG CTGCATXGXG CXXXX 996 3 1 36 4 1 3 1 3 2 7 94 11 4 1 3 1 2 1 1 45 66 1 2 3 5 1 1 9 3 5 1 1 1 1 1 1 4 1 1 9 1 11 6 7 1 2 1 1 1 7 6 2 75 1 2 1 81 4 2 40 1 1 1 1 1 2 24 1 100 1 3 1 14 12 88 1 1 1 249 4 1 14 10 165 183 3 1 21 1 33 1 5 2 1 45 53 1 40 5 3 45 2 188 1070 10 29 P ^Age001 GGCTCACATC TAGTTCATCA GCCTTTTAX ^Adi002 GGCTCACATC TAGTTCATGC AGTCCAGXX ^Adi001 GGCTCACATC TAGTTCGCCC AGTCCAGXX ^Aru127 GGCTCACATC TATCCTACCA GCTCCAGAX ^Aru001 GGCTCACATC CGGCCTACCA GCCCCAGAX ^Ama006 GGCTCACCAT TAGTTTACCA GCCCCAGAX ^Smi165 GGCTCTXATT TXGTXCATCA ATTTCGXXX ^Aga001 GGCCGAXATC TXGTXTACCA GCCCCAXXX ^Ama018 GGATCACAAT TAGTTTACCA GCCCCAGAX ^Aga002 GCCTGAXATC TXGTXTACCA GCTCCAXXX 1567 3 1 4 3 67 118 1 3 1 6 1 4 2 2 2 4 1 1 9 1 1 1 1 28 2 2 24 3 10 23 P ^Age001 ACAGCTGTGC TCGTTCTCCC GXX ^Adi002 ACAGCTGTGC TTCCCTCTGG XCC ^Adi001 ACAGCTGTGC CCCCCTCTGG XCC ^Aru127 ACAGCTGTAG TCGTCTCTTA XCC ^Aru001 ACAGCTGCGG TCGTCTCTGA XCC ^Ama006 ACAGCACTGC TCGTTTCTCG XCC ^Smi165 ACATTTGTGC TTGCTCTTTG XCC ^Aga001 ACGGTTCTGC TCGTTCCTGG XCT ^Ama018 ATAGCACTGC TCGTTTCTCG XCC ^Aga002 ACGGTTCTGC TCGTTCCTGG XCT 1109 2 2 29 1 1 3 3 1 4 1 1 7 1 1 1 4 49 1 1 14 4 1 10 27 P ^Age001 TGTAACAAAC TCAGTATATC TACXXXX ^Adi002 TGTAACAAAC ATGTGTGCCG GTXTCTA ^Adi001 TGTAACXXXX ATGTGTAXXX XXXTXXX ^Aru127 TGTAATAAAG TCGTGCGACG GTXTCTC ^Aru001 TGTAGTXXXX TCGTGCAXXX XXXTXXX ^Ama006 TGTGACAAAC TAGTGCGACG GTXTCGC ^Smi165 TGCAACAAAC TTATACGATG GCXTCGC ^Aga001 TATAACAATG TCGTGCGACG GTXTCGC ^Ama018 TGTGACAXXC TAGTGCGXCG XXXTXXX ^Aga002 TATAACXXXX TCGTGCAXXX XXXTXXX 691 2 12 1 1 3 29 16 1 1 3 1 3 120 1 1 1 1 1 29 18 2 127 51 16 1 5 10 28 P ^Age001 GCTCGCTCAA CCTGCGTGTC TTCCGTTX ^Adi002 GCTCGCTCAA CCTGCGCAAT CCTTTCAG ^Adi001 GCTCGCTCAA CCTGCATGAT CCTTTCAG ^Aru127 GCTCGCTCAT TTCTTATATC TCTTCACX ^Aru001 GCTCGCTCGA CCTGTATGTT CCTTTCAG ^Ama006 GCTCGCCTAA CCTGCATGTC CCTTGCAX ^Smi165 GCTCCTTCAA CCCACATGTC CTTTGCGX ^Aga001 GCTTGTTCAA CCTGCGTGTC TTCTGCAG ^Ama018 GCCCGCTTAA TATGCGTGTC TTCTGCAX ^Aga002 GTTTGATCAA CCTGCGTGTC TTCTGCAG 1230 1 2 9 5 1 3 2 1 44 1 1 10 2 2 1 2 1 1 1 1 1 1 6 1 1 1 3 10 58 P ^Age001 AACGACGCGT ATTGCACTTG TACGGCGCCT CACGGCAGAA GATCAGATAA GCXXXXXX ^Adi002 AACGACGCGT ATTGCACTTG TACGGCGCCT CGTAATGATC AGCACCCACT TXCAAAGX ^Adi001 AACGACGCGT ATTGCACTTG TACGGCGTTC TACAATGATC AGCACCCACC CXCAAAGX ^Aru127 AACGACGCGT ATTGCACCCC CGTAATCCCT TACGGCAGTC AGCACCTCGC CXCAAAXX ^Aru001 AACGACGCGT ATCATGTTTC CGTAATACTC TACGGCAGAC AGCACTCCGC CXCAGGGX ^Ama006 AACGACGAAC GXTATGTTTG TACGATACCT CACGATGTAA GACACTCACC CXCAAGXX ^Smi165 AACGATACGC GTTGCGTTCG TATAGTACCC AACGGCGAAA GGTAGTCATC CXCCAGGX ^Aga001 AACATCGCGT ATTGTATTCG TGCAATACCT CATGGTGGTC AGCACCAACC CXCAAAGX ^Ama018 AATGACTCAT GXTATGTTTG CGCGATACCT CACGGTGGAA AGCACTCACA CXCAAGXX ^Aga002 ACCGTCGCGT ATTGCACTCG TGCAACGCCT CATGGTGGTC AGCACCCACC CXCAAAGX 2704 1 4 5 3 63 1 26 12 16 6 3 3 1 2 1 6 1 1 12 1 3 3 1 2 3 1 8 8 1 1 11 1 12 1 1 3 1 2 1 9 3 4 145 2 2 1 3 1 1 1 93 32 2 1 1 3 249 10 66 P ^Age001 TATACTGTAG CCAGATGTCT TGGACTACGT AGGCGGGGGT GTAGACCCAA CAGTACCTAG TXXXXX ^Adi002 TATACTGTAG CCAGATGTCT TGGACTACGT AACTAAAXXX XXXXXXXXXX XXXXXXXXXX XGACXX ^Adi001 TATACTGTAG CCAGATGTCT TGGACTCTAC GGGCAAAGGT GTAGACCCAA CAGTATTCGA CGAXXX ^Aru127 TATACTGTAG CCAGAAAATC CACGAXACAC GGGCGAAGGT GTAGACCCAT TGTCXCCCGA CGTXXX ^Aru001 TATACTGTAG CCATCTGTCC CACGGTACGC GGGCGAAGGT GTAGACCCGA CGTCACCCGA CGAXXX ^Ama006 TATACTGTAG CTTGATGTTT TACGCXACGT GGGCGAAGGT GTAGACTTAA TAGTXCGCGA CGAXXX ^Smi165 TATACTGAGA TCGGATACTT CGCGATATGT GGGAGAAGGT GTGAGTCCAA GATCCCCTAA CGAXTX ^Aga001 TATAACATAG TCAGATATCT TGGGATACGT AGGCGAAGGT TCAGAGCCAA CAGCACCCGA CGAXXX ^Ama018 TAAXCTXTGX CCAGXTGTCC CAGGGXACGX XGXXGGAGCX GTAAXCCTAA CGGCXCCCXA AGAXXX ^Aga002 TTTACCATAG TCAGATATCT TGGGCTACGT AGGCGAAGGT GCAGATCCAA CAGCACCCAA CGAXXX 1206 1 2 174 3 4 1 46 1 8 1 5 1 2 1 9 1 2 1 1 1 1 1 1 1 8 2 1 1 2 1 3 2 1 1 1 8 979 4 48 4 3 17 1 1 1 2 1 1 2 1 1 2 2 1 4 1 1 1 4 1 26 1 1032 6 294 10 43 P ^Age001 AATCCGCTAG CTTGCGGCTT ATTGACATAT GATXXXXXXX XXX ^Adi002 AATCCGCTAG CTTGCGGCCG CCCAGAGCCA TTXTCGCGCT XXX ^Adi001 AATCCGCTAG CTTGCTTTTT CCCAGAGCCA TCXTCGCGCT XXX ^Aru127 AATCCGCTAG CCCCTGGCTT ATTGGAGCCA CAXTCGXXXX XXX ^Aru001 AATCCGCTAG GTTCTGGGTT ATTGAAGCCA CAXTCGXXXX XXX ^Ama006 AATCCGCTGA CTAGTGGTTT ATTAAAGCCG CAXTCGXXXX AAX ^Smi165 AATCTTTXAG CTTGCGXTTG ATCGACGCCA CAXTCTCGXX AGX ^Aga001 AAGACGTTAA CTTGTGGCTT AGTGAAGCTA CAXTCGCXGX XXX ^Ama018 AATCCGCTGA CTAGTGGTTT ATTAAAGCCG CAXTCGXXXX AAX ^Aga002 AGTACCTTAA CTTGTGGCTT AGTGAAACTA CAXTAGXXXX XXX 2865 3 1 6 45 1 1 2 8 2 5 1 1 7 3 8 1 1 7 1 18 1 7 1 1 1 1 62 1 1 1 1 4 145 1 2 2 1 1 5 134 13 439 10 35 P ^Age001 AGCCGCCCTC ACATCCGTAX XXXXXXXXXX XXXXX ^Adi002 AGCCGCCCTT GTGCTTTATT TTCCGTAGAT CTXXX ^Adi001 AGCCGCCCTC ATGCTTTATT TTCCGTAGAT AGGCX ^Aru127 AGCCGCCGCC GCATTTTATT TTCCGTTTTA AGGGT ^Aru001 AGCCGCTGCC GCATTTTATT TTCCGCTTTG AGXXX ^Ama006 AGCCGCCCTC GTGCTTTATT TTCCCTAGTG AGGCT ^Smi165 AGTXXXXCXC XCXXTGXXXT CXXXXXXXXX XXXXX ^Aga001 AACCGCCGTC GCATTTTATT TTCCGTATTT AGXXX ^Ama018 AGCCGCCCTC GTGCTTTATT TTCCGTAGTG AGGCT ^Aga002 AACCAXCGTC XCACTTTGXT TTTXXTXXXX AXXXX 298 1 13 15 9 79 1 1 1 1 1 1 1 1 2 1 1 3 14 60 3 45 5 222 2 1 1 1 2 1 1 1 38 1 27 10 16 P ^Age001 TGCGAAACAC GGATGX ^Adi002 TGCGAAACAC AAGCTA ^Adi001 TGCGAAACAG GAGCTA ^Aru127 TGCGAAGGTC GGGCTA ^Aru001 TGCGAAAGTC GGGCTA ^Ama006 TGCGATACAC GGGCTA ^Smi165 TGAAGAACAC GGACCA ^Aga001 TCCGAAACTC GGGCTA ^Ama018 TGCGGTACAC GGGCTA ^Aga002 TGCAAAACTC GGGCTA 933 2 27 1 1 4 1 2 1 4 3 4 1 10 2 3 10 37 P ^Age001 AGTGTGAAGA TAAATAXXXX XXXXXXXXXX XXXXXXX ^Adi002 AGTGTGAAGT CGGGATATGT TTAGTGGATA GGAGGCX ^Adi001 AGTGTGAAAA CGGGATATGT TTAGTGGATA GGAGCGX ^Aru127 AGTGTATGGA TAGGAGATGT TTAGTGGATA ATCCGCX ^Aru001 AGTGTGTGGA TAGGAGATGT TTAGTGGATA ATCCGCX ^Ama006 AGTGCGAGGA TGGGATATGT TTAGTACCAG GGACGCX ^Smi165 AGTATGAGGA TGAGGTATGT TCTAXGGAAT GGGCGCX ^Aga001 AGCGTGAGGA TAAGAAAATX XTXXTGGXAA GTGCGXX ^Ama018 ACTGCGAGGA TGGGATATGT TTAGTGCAAG GGACGCX ^Aga002 AGCGTGAGGA TAAGAAATTT CTAATGGAAA GTACGCX 815 1 2 22 6 2 3 1 4 1 5 1 1 16 1 1 317 1 2 45 2 9 2 1 6 1 1 1 1 1 2 1 1 1 4 3 144 10 41 P ^Age001 CAAATTCCGT CCATTTTCCG TCCCXXXXXX XXXXXXXXXX X ^Adi002 CAAATTCCGT CCATTTTCCG ATTTTTTXXX XXXXXXXXXX X ^Adi001 CAAATTCCGT CCATTTGTTX ATTXTTTTAA GGACTATTXX X ^Aru127 CAAATTCCGT CTTCCXTCTX TTTXTTCTTX XXXXXXXXCT X ^Aru001 CAAATTCCGC TCTCCXTCTX TTTXTTCTTX XXXXXXXXCC X ^Ama006 CAAATCTTAT TCATCTTCTX TTAXTTCTTA GGACAGCCXX X ^Smi165 CAAAGTCTAT CCATCTTATX TTTXTCCTTA GGGXTGCXXX X ^Aga001 CACGTTCCGT CCATCTTTTX TTTXTTCTTA AAACTACCXX X ^Ama018 CAAATTTCAT TCATCTTCTX TTAXTTCTTA GGACAGCCXX X ^Aga002 CGAGTTCCGT CCACCTTCTX TTTXTTCTTA GAACTACCXX X 2976 1 5 3 57 1 8 1 2 2 1 2 67 1 1 4 5 1 27 408 6 21 1 5 97 4 1 10 1 378 1 1 10 53 3 1 2 1 372 1 765 10 35 P ^Age001 GAGTTTCTTA TGGTTCAACG GCCAAGTTTG CAGXX ^Adi002 GAGTTTCTTA TGGTTGTTTA CTGCTTXXXX XXXGX ^Adi001 GAGTTTCTTA TGGAGCAACA CTGCGCXXXX XXXXX ^Aru127 GAGTTTCTTA CATTGCAATG CTGCGCXXXX XXXXX ^Aru001 GAGTTTCTTA TATTGCAATG CTGCGCXXXX XXXXX ^Ama006 GAGTTTCTTG TGTTGCAACG CTGCGCTTTG ACCXX ^Smi165 GAGTCCTAXA TGGTGCTGTG GTGCACTXXX XXXXX ^Aga001 GAACTTTCTA TGTTGCAACG CCGTGCTTTA CACXX ^Ama018 GAGTTTCTTG TGTTGCAACG CTGCGCTTCG CCCXX ^Aga002 GGAGTCTCTA TGTTGCAACG CCGTGCXXXX XXXXX 1613 17 26 1 31 2 8 1 3 4 1 4 2 4 2 44 8 5 1 3 1 1 8 1 2 1 12 378 2 1 1 1 4 6 201 10 16 P ^Age001 CGCACAGAGG CTGCCG ^Adi002 CGCACAGAGG CTATTT ^Adi001 CGCACAGAGG CTGCTT ^Aru127 CGCACAGAGA GGGCCT ^Aru001 CGCACAGAAA GGGCCT ^Ama006 CGCACGAGGG GGGCCT ^Smi165 CGCGTAATGG CGGTCT ^Aga001 CCAATAGAGG GTGCCT ^Ama018 CGCACGAGGG GGGCCT ^Aga002 CGAATAGAGG GTGCCT 966 2 4 42 1 4 1 1 2 3 1 1 2 2 2 1 10 34 P ^Age001 GTACTAGCGC TTGTACTGCT CTTTGTXXXX XXXX ^Adi002 GTACTAGCGC TTGTTTCCAA TCCATGTTTX XXXX ^Adi001 GTACTAGCGC TCACACTGCA TCCATCTGCT CTTX ^Aru127 GTACTAGGAT CTGTACTGCT CTTAATXXXX XXXX ^Aru001 GTACTAACAT CTGTACTGAT CTTAATXXXX XXXX ^Ama006 GTACTCGCGC CTGCACTCCT CCCAATXXXX XXXX ^Smi165 GTACCAGCGT TTACACGCCT TTCACTTTCT CAXX ^Aga001 GTCTTAGCGC CTGCATTCCT CTCAATTTGT ATXX ^Ama018 GTACTCGCGC CTGCACTCCT CCCAATXXXX XXXX ^Aga002 GAATTAGCGC CTGCATTCCT CCCAATXXXX XXXX 806 1 3 1 21 4 1 1 5 1 1 7 1 1 6 1 1 2 1 2 2 1 2 5 1 1 1 1 1 1 1 1 9 216 10 65 P ^Age001 CGCGCTGCTC TAGTCCTGCG CAACTCTTAG GGGGCTGTGG GGCGGAATAT CGCGXXXXXX XXXXX ^Adi002 CGCGCTGCTC TAGTCCTGCG CAACTCTTAG GGTCTCAGAC ACTACGGAGC GCGXCAXXXX XXXXX ^Adi001 CGCGCTGCTC TAGTCCTGCG CAACTCTTAG GCGGCTGTAC ACTACGGAGC GAAXCAAXXX XXXXX ^Aru127 CGCGCTGCTC TAGTCCTGCG CAACTTCGGC CGGGCTGCGG GGCGGGGAGC TGATCXXCCC TAXXX ^Aru001 CGCGCTGCTC TAGTCCTCTC TGGXXCTTAC CGGGTCCTGG GGCGCGGAGC GGAGCXXCCC TTXXX ^Ama006 CGCGCTGCTC TAGCTACGCG CAGCTCTTGG CGGGCTGTGG GGCAGGGAGC TGATCXXCCT CAAXX ^Smi165 CGCGCTGCCT CGATCCCGCG CGGCTCTAGG CGGGCCGTGG GCTGCAGAGC TGATCXXCTC TAXXX ^Aga001 CGCGTCCTTC TAATCTTGCG TGGCTCTTGG CGGGTCGTGG GGCGCGGAGC TGATCXXCCC TAXXX ^Ama018 CGCACTGCTC TAGTTCCGCG CAGCTCTTGG CGGGCTGTGG GGCAGGGAGC TGATCXXCCC CAXXX ^Aga002 CAXGCCAXTT GXGTCCTGTX XXXCCCXTXG CGGXXXGTGC CGXGXGAACX XGAXCXXCCC TAXCX 923 112 132 9 1 2 1 3 35 1 2 4 1 8 3 1 2 8 1 3 1 2 1 2 1 1 2 1 2 1 4 2 23 1 2 7 1 1 13 1 1 1 1 1 1 1 1 11 1 6 1 1 1 4 3 4 468 92 1 1 1 1 3 143 417 10 33 P ^Age001 GATCTGGTTC TACACGAAAC TGTTATTCCT TTX ^Adi002 GATCTGGTTC TACATACGGA AAAGGCATTC CGX ^Adi001 GATCTGGTTC TACACGAAAC TGTTATTTTC CGX ^Aru127 GATCTGGTTC TGTGCACGGA AAAGTGGCCC CCX ^Aru001 GATCTGGTTC GGTGCACGGA AAAGTGGCCC CCX ^Ama006 GATCTGGTTT TGTGCACGGA AAAGTGGCCC CCX ^Smi165 GATCTAAAAC TATGCGAGGA CTCAACGCTC CCX ^Aga001 GATGXGACXC TATCCGCAGG TACCCAACCC CCG ^Ama018 GACCTGGTTC TGTGCACGGA AAAGTGGCCT CCX ^Aga002 GTTCTGGTTC TGTGCGAAAC TGTTATTCCC CCX 731 1 2 25 8 16 2 5 1 2 1 2 1 1 1 2 3 4 4 3 1 2 3 4 1 1 1 3 1 1 6 1 603 Per-locus sequences in data and 'species&tree' tag: C.File | Data | Status | Population -------+------+--------------------------------------+----------- 3 | 2 | [OK] | Adig 2 | 2 | [OK] | Agra 1 | 1 | [OK] | Agre 2 | 2 | [OK] | Amad 2 | 2 | [OK] | Arub 1 | 1 | [OK] | Smic Initial MSC density and log-likelihood of observing data: log-PG0 = 3841.134439 log-L0 = -485895.491458 Distributing workload to threads: Thread 0 : loci [ 1 - 26), Patterns/Seqs/Load : 1063 / 250 / 10630 Thread 1 : loci [26 - 51), Patterns/Seqs/Load : 1034 / 250 / 10340 Thread 2 : loci [51 - 76), Patterns/Seqs/Load : 1011 / 250 / 10110 Thread 3 : loci [76 - 101), Patterns/Seqs/Load : 1007 / 250 / 10070 0:00 taken to read and process data.. Restarting timer... -*- Terms index -*- Prgs: progress of MCMC run (negative progress means burnin) Gage: gene-tree age proposal Gspr: gene-tree SPR proposal th1: species tree theta proposal (tips) (sliding window) th2: species tree theta proposal (inner) (sliding window) thg: species tree theta proposal (inner) (gibbs sampler) tau: species tree tau proposal mix: mixing proposal stree: Sspr (0.8000) & Ssnl (0.2000) theta1: root node mean theta tau1: root node mean tau log-PG: log-probability of gene trees (MSC) log-L: mean log-L of observing data | Acceptance proportions | Prgs | Gage Gspr th1 th2 thg tau mix Sspr Ssnl | theta1 tau1 log-PG log-L --------------------------------------------------------------------------------------------------- Gage Gspr th1 th2 tau mix Current Pjump: 0.32928 0.40960 0.71977 0.80840 0.08139 0.00592 Current finetune: 5.00000 0.00100 0.00050 0.00200 0.00100 0.30000 New finetune: 5.58250 0.00147 0.00208 0.01265 0.00025 0.00548 => 'finetune = 1 Gage:5.582503 Gspr:0.001472 th1:0.002083 th2:0.012646 tau:0.000252 mix:0.005475' -5% 0.33 0.34 0.20 0.16 0.96 0.29 0.64 0.0403 0.0000 0.0346 0.0130 3569.01478 -451079.36998 1:21 Gage Gspr th1 th2 tau mix Current Pjump: 0.32867 0.33797 0.19957 0.16254 0.29339 0.64184 Current finetune: 5.58250 0.00147 0.00208 0.01265 0.00025 0.00548 New finetune: 6.21895 0.00170 0.00133 0.00648 0.00025 0.01704 => 'finetune = 1 Gage:6.218951 Gspr:0.001696 th1:0.001326 th2:0.006478 tau:0.000246 mix:0.017042' Gage Gspr th1 th2 tau mix Current Pjump: 0.32894 0.31280 0.32849 0.26386 0.30541 0.28848 Current finetune: 6.21895 0.00170 0.00133 0.00648 0.00025 0.01704 New finetune: 6.93498 0.00178 0.00148 0.00559 0.00025 0.01629 => 'finetune = 1 Gage:6.934979 Gspr:0.001781 th1:0.001476 th2:0.005594 tau:0.000251 mix:0.016286' 0% 0.33 0.30 0.31 0.31 0.96 0.30 0.30 0.0357 0.0000 0.0344 0.0131 3527.04986 -451079.15272 2:42 Gage Gspr th1 th2 tau mix Current Pjump: 0.32864 0.30323 0.30921 0.31490 0.30402 0.30344 Current finetune: 6.93498 0.00178 0.00148 0.00559 0.00025 0.01629 New finetune: 7.72481 0.00180 0.00153 0.00592 0.00025 0.01650 => 'finetune = 1 Gage:7.724813 Gspr:0.001803 th1:0.001529 th2:0.005921 tau:0.000255 mix:0.016504' 5% 0.33 0.30 0.34 0.24 0.96 0.30 0.30 0.0252 0.0000 0.0347 0.0129 3561.27610 -451078.29063 4:04 10% 0.33 0.30 0.34 0.26 0.96 0.30 0.30 0.0267 0.0000 0.0345 0.0131 3529.59850 -451079.19002 5:25 15% 0.33 0.30 0.35 0.27 0.96 0.30 0.29 0.0276 0.0000 0.0345 0.0131 3549.22572 -451079.20594 6:47 20% 0.33 0.30 0.35 0.27 0.96 0.30 0.29 0.0280 0.0000 0.0345 0.0130 3543.28261 -451079.02410 8:08 25% 0.33 0.30 0.35 0.27 0.96 0.30 0.29 0.0277 0.0000 0.0346 0.0130 3563.75569 -451078.90027 9:30 30% 0.33 0.30 0.35 0.28 0.96 0.30 0.29 0.0275 0.0000 0.0345 0.0130 3522.52806 -451078.84118 10:51 35% 0.33 0.30 0.35 0.28 0.96 0.30 0.29 0.0279 0.0000 0.0346 0.0130 3494.32702 -451078.80229 12:13 40% 0.33 0.30 0.35 0.28 0.96 0.30 0.29 0.0280 0.0000 0.0345 0.0130 3528.24953 -451078.87387 13:35 45% 0.33 0.30 0.35 0.28 0.96 0.30 0.29 0.0289 0.0000 0.0345 0.0131 3538.15014 -451079.06570 14:56 50% 0.33 0.30 0.35 0.28 0.96 0.30 0.29 0.0282 0.0000 0.0345 0.0131 3495.80497 -451079.10398 16:18 55% 0.33 0.30 0.35 0.28 0.96 0.30 0.29 0.0284 0.0000 0.0345 0.0131 3535.12114 -451079.11100 17:39 60% 0.33 0.30 0.35 0.29 0.96 0.30 0.30 0.0288 0.0000 0.0345 0.0130 3579.16709 -451078.97281 19:01 65% 0.33 0.30 0.35 0.29 0.96 0.30 0.30 0.0294 0.0000 0.0345 0.0130 3543.08591 -451079.05684 20:23 70% 0.33 0.30 0.35 0.29 0.96 0.30 0.30 0.0294 0.0000 0.0345 0.0130 3558.62244 -451079.03195 21:44 75% 0.33 0.30 0.35 0.29 0.96 0.30 0.29 0.0303 0.0000 0.0345 0.0130 3577.06218 -451079.12723 23:06 80% 0.33 0.30 0.35 0.29 0.96 0.30 0.30 0.0303 0.0000 0.0345 0.0131 3539.61436 -451079.22136 24:27 85% 0.33 0.30 0.35 0.29 0.96 0.30 0.29 0.0296 0.0000 0.0345 0.0131 3543.26904 -451079.31980 25:49 90% 0.33 0.30 0.35 0.29 0.96 0.30 0.29 0.0293 0.0000 0.0345 0.0131 3538.38791 -451079.36265 27:11 95% 0.33 0.30 0.35 0.29 0.96 0.30 0.29 0.0294 0.0000 0.0345 0.0131 3519.53843 -451079.51147 28:32 100% 0.33 0.30 0.35 0.29 0.96 0.30 0.29 0.0291 0.0000 0.0345 0.0131 3542.43855 -451079.45522 29:54 29:54 spent in MCMC Species in order: 1. Adig 2. Agra 3. Agre 4. Amad 5. Arub 6. Smic (A) Best trees in the sample (10 distinct trees in all) 39906 0.39906 0.39906 (((Adig, (Agra, (Amad, Arub))), Agre), Smic); 36094 0.36094 0.75999 (((Adig, Agre), (Agra, (Amad, Arub))), Smic); 13075 0.13075 0.89074 ((Adig, ((Agra, (Amad, Arub)), Agre)), Smic); 4412 0.04412 0.93486 (((Adig, ((Agra, Amad), Arub)), Agre), Smic); 3898 0.03898 0.97384 (((Adig, Agre), ((Agra, Amad), Arub)), Smic); 1253 0.01253 0.98637 ((Adig, (((Agra, Amad), Arub), Agre)), Smic); 614 0.00614 0.99251 (((Adig, ((Agra, Arub), Amad)), Agre), Smic); 531 0.00531 0.99782 (((Adig, Agre), ((Agra, Arub), Amad)), Smic); 217 0.00217 0.99999 ((Adig, (((Agra, Arub), Amad), Agre)), Smic); 1 0.00001 1.00000 (((Adig, Agre), (Agra, (Amad, Smic))), Arub); (B) Best splits in the sample of trees (11 splits in all) 100000 0.999990 010110 100000 0.999990 111110 89075 0.890741 000110 44932 0.449316 110110 40524 0.405236 101000 14545 0.145449 011110 9563 0.095629 010100 1362 0.013620 010010 1 0.000010 111101 1 0.000010 010101 1 0.000010 000101 (C) Majority-rule consensus tree ((Adig, (Agra, (Amad, Arub) #0.890741) #0.999990, Agre) #0.999990, Smic); (D) Best tree (or trees from the mastertree file) with support values (((Adig, (Agra, (Amad, Arub) #0.890741) #0.999990) #0.449316, Agre) #0.999990, Smic); [P = 0.399056]