transcript_ablation
splice_acceptor
splice_donor
stop_gained
exon_loss
frameshift
stop_lost
start_lost
transcript_amplification
gene_fusion
disruptive_inframe_insertion
disruptive_inframe_deletion
inframe_insertion
inframe_deletion
missense
protein_protein_contact
conservative_inframe_insertion
conservative_inframe_deletion
protein_altering
inframe_altering
splice_region
structural_interaction_variant
bidirectional_gene_fusion
incomplete_terminal_codon
start_retained
stop_retained
rare_amino_acid
5_prime_utr_truncation
3_prime_utr_truncation
# `IMPACT_CUTOFF` is a special value that slivar uses to set INFO.impactful for any variant with
# any CSQ that has an impact that falls above this sentinel
IMPACTFUL_CUTOFF
synonymous
gene
coding_sequence
mature_miRNA
5_prime_UTR_premature_start_codon_gain_variant
5_prime_UTR
3_prime_UTR
initiator_codon
splice_donor_5th_base
splice_polypyrimidine_tract
splice_donor_region
miRNA
non_coding_transcript_exon
non_coding_exon
non_canonical_start_codon
nc_transcript
exon_region
conserved_intron
GENIC_CUTOFF
feature_fusion
intron
NMD_transcript
non_coding_transcript
non_coding
upstream_gene
sequence_feature
downstream_gene
intragenic
TFBS_ablation
TFBS_amplification
TF_binding_site
regulatory_region_ablation
regulatory_region_amplification
feature_elongation
regulatory_region
conserved_intergenic
feature_truncation
intergenic
intergenic_region