{ "cells": [ { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [], "source": [ "%matplotlib inline\n", "import pandas as pd\n", "import numpy as np\n", "import re\n", "import os\n", "import math\n", "from multiprocessing import Pool\n", "from tqdm import tqdm\n", "from scipy import stats\n", "## init\n", "mySpecie='Homo_sapiens'\n", "#prealigned_dir='/cellar/users/btsui/all_seq_snp/Homo_sapiens_all_merged_snp.TCGA.prealigned.pickle'\n", "targetted_align_dir='/cellar/users/btsui/all_seq_snp/Homo_sapiens_all_merged_snp.TCGA.pickle'\n", "manifest_dir='/cellar/users/btsui/Project/METAMAP/notebook/RapMapTest/XGS_WGS/./tcga_lgg_wgs_bams.df.wxs_rnaseq.pickle'" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [], "source": [ "targetted_df=pd.read_pickle(targetted_align_dir).loc[\"TCGA\"]" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [], "source": [ "all_UUIDs=targetted_df.index.get_level_values('Run_digits').unique()" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "n UUID: 1570\n" ] } ], "source": [ "#883, 1427\n", "print ('n UUID:',len(all_UUIDs))" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [], "source": [ "#targetted_df.head()" ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [], "source": [ "### use andrea mapping to map from TCGA barcode to UUID. " ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### annotate metadata" ] }, { "cell_type": "code", "execution_count": 9, "metadata": {}, "outputs": [], "source": [ "manifest_df=pd.read_pickle(manifest_dir)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 10, "metadata": { "scrolled": true }, "outputs": [], "source": [ "manifest_df['processed']=manifest_df.file_id.isin(all_UUIDs)" ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [], "source": [ "uuid_barcode_mapDf=pd.read_csv('/cellar/users/andreabc/GDC_barcodes/uuid_barcode_map.txt',sep='\\t').set_index('file_id')" ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [], "source": [ "manifest_df['sample_barcode']=uuid_barcode_mapDf.loc[manifest_df.file_id]['sample_barcode'].values" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [], "source": [ "m_data_category=manifest_df.data_category=='Raw Sequencing Data'\n", "m_experimental_strategy=manifest_df['experimental_strategy'].isin(['RNA-Seq','WXS'])" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [], "source": [ "manifest_df_sub=manifest_df[manifest_df['processed']&m_data_category&m_experimental_strategy]" ] }, { "cell_type": "code", "execution_count": 15, "metadata": {}, "outputs": [], "source": [ "tmpVC=manifest_df_sub['sample_barcode'].value_counts()\n", "with_both=tmpVC.index[tmpVC==2]\n" ] }, { "cell_type": "code", "execution_count": 16, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "524" ] }, "execution_count": 16, "metadata": {}, "output_type": "execute_result" } ], "source": [ "len(with_both)" ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [], "source": [ "manifest_df_w_RNA_WXS=manifest_df_sub[manifest_df_sub.sample_barcode.isin(with_both)]\n" ] }, { "cell_type": "code", "execution_count": 18, "metadata": {}, "outputs": [], "source": [ "#g=manifest_df_w_RNA_WXS.groupby(['sample_barcode','experimental_strategy'])\n", "#[manifest_df_sub['sample_barcode']=='TCGA-HT-A4DV-01A']" ] }, { "cell_type": "code", "execution_count": 19, "metadata": {}, "outputs": [], "source": [ "#manifest_df_sub" ] }, { "cell_type": "code", "execution_count": 20, "metadata": {}, "outputs": [], "source": [ "#queryBarcode='TCGA-HT-A4DV-01A'\n", "#rnaseq_uuid=g.get_group((queryBarcode,'RNA-Seq'))['file_id'].iloc[0]\n", "#wxs_uuid=g.get_group((queryBarcode,'WXS'))['file_id'].iloc[0]" ] }, { "cell_type": "code", "execution_count": 21, "metadata": {}, "outputs": [], "source": [ "rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='WXS']['file_id'].unique()\n" ] }, { "cell_type": "code", "execution_count": 22, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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featuresReadDepthAverageBaseQuality
Run_digitsChrPosbase
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" ], "text/plain": [ "features ReadDepth \\\n", "Run_digits Chr Pos base \n", "08ce1dd9-3167-4fe4-8619-724727a32a36 1 14727 A 18 \n", " G 280 \n", " 630825 T 11 \n", " 630833 C 9 \n", " 833068 G 2 \n", "\n", "features AverageBaseQuality \n", "Run_digits Chr Pos base \n", "08ce1dd9-3167-4fe4-8619-724727a32a36 1 14727 A 28 \n", " G 32 \n", " 630825 T 32 \n", " 630833 C 34 \n", " 833068 G 34 " ] }, "execution_count": 22, "metadata": {}, "output_type": "execute_result" } ], "source": [ "targetted_df.head()" ] }, { "cell_type": "code", "execution_count": 23, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/IPython/core/interactiveshell.py:2785: DtypeWarning: Columns (0) have mixed types. Specify dtype option on import or set low_memory=False.\n", " interactivity=interactivity, compiler=compiler, result=result)\n" ] } ], "source": [ "inVcfDir='/data/cellardata/users/btsui/dbsnp/Homo_sapiens/All_20170710.f1_byte2_not_00.vcf.gz' \n", "vcfDf=pd.read_csv(inVcfDir,sep='\\t',header=None)\n", "vcfDf.columns=['Chr','Pos','RsId','RefBase','AltBase','','','Annot']\n", "vcfDf['Chr']=vcfDf['Chr'].astype(np.str)\n" ] }, { "cell_type": "code", "execution_count": 24, "metadata": {}, "outputs": [], "source": [ "\"\"\"for _,vcfDfRowS in vcfDf.iterrows():\n", " query_chromosome,qeury_corrdinate=vcfDfRowS['Chr'],vcfDfRowS['Pos']\n", " selectedBase=vcfDfRowS['AltBase']\n", " break\"\"\"\n", "\n", "varscanVcfMerged=pd.read_pickle('/cellar/users/btsui/Project/METAMAP/notebook/RapMapTest/XGS_WGS/Data/TCGA_VCF.varscan_dr.pickle')" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 25, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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Groupone_vcf_df...normal_dfINFO
VCF_columnsindexCHROMPOSIDREFALTQUALFILTERINFOFORMAT...DPRDADFREQDP4DPGPVSPVSSSSC
TUMORNORMAL
TCGA-DU-5870-01A-11D-1705-08TCGA-DU-5870-10A-01D-1705-0800chr1944131.AC.PASSDP=89;GPV=1E0;SOMATIC;SPV=5.0789E-2;SS=2;SSC=12GT:GQ:DP:RD:AD:FREQ:DP4...2018210%8,10,0,2891E05.0789E-2212
11chr1944136.TC.PASSDP=92;GPV=1E0;SOMATIC;SPV=1.8932E-2;SS=2;SSC=17GT:GQ:DP:RD:AD:FREQ:DP4...2522312%10,12,0,3921E01.8932E-2217
22chr11300684.CA.PASSDP=71;GPV=1E0;SOMATIC;SPV=6.3354E-2;SS=2;SSC=11GT:GQ:DP:RD:AD:FREQ:DP4...1816211.11%7,9,0,2711E06.3354E-2211
33chr11713611.CT.PASSDP=59;GPV=1E0;SOMATIC;SPV=4.5001E-3;SS=2;SSC=23GT:GQ:DP:RD:AD:FREQ:DP4...148538.46%5,3,1,4591E04.5001E-3223
44chr11713674.TC.PASSDP=42;GPV=1E0;SOMATIC;SPV=3.252E-2;SS=2;SSC=14GT:GQ:DP:RD:AD:FREQ:DP4...86225%0,6,0,2421E03.252E-2214
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5 rows × 31 columns

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" ], "text/plain": [ "Group one_vcf_df \\\n", "VCF_columns index CHROM \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 0 chr1 \n", " 1 1 chr1 \n", " 2 2 chr1 \n", " 3 3 chr1 \n", " 4 4 chr1 \n", "\n", "Group \\\n", "VCF_columns POS ID REF \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 944131 . A \n", " 1 944136 . T \n", " 2 1300684 . C \n", " 3 1713611 . C \n", " 4 1713674 . T \n", "\n", "Group \\\n", "VCF_columns ALT QUAL FILTER \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 C . PASS \n", " 1 C . PASS \n", " 2 A . PASS \n", " 3 T . PASS \n", " 4 C . PASS \n", "\n", "Group \\\n", "VCF_columns INFO \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 DP=89;GPV=1E0;SOMATIC;SPV=5.0789E-2;SS=2;SSC=12 \n", " 1 DP=92;GPV=1E0;SOMATIC;SPV=1.8932E-2;SS=2;SSC=17 \n", " 2 DP=71;GPV=1E0;SOMATIC;SPV=6.3354E-2;SS=2;SSC=11 \n", " 3 DP=59;GPV=1E0;SOMATIC;SPV=4.5001E-3;SS=2;SSC=23 \n", " 4 DP=42;GPV=1E0;SOMATIC;SPV=3.252E-2;SS=2;SSC=14 \n", "\n", "Group \\\n", "VCF_columns FORMAT \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 GT:GQ:DP:RD:AD:FREQ:DP4 \n", " 1 GT:GQ:DP:RD:AD:FREQ:DP4 \n", " 2 GT:GQ:DP:RD:AD:FREQ:DP4 \n", " 3 GT:GQ:DP:RD:AD:FREQ:DP4 \n", " 4 GT:GQ:DP:RD:AD:FREQ:DP4 \n", "\n", "Group ... normal_df \\\n", "VCF_columns ... DP RD \n", "TUMOR NORMAL ... \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 ... 20 18 \n", " 1 ... 25 22 \n", " 2 ... 18 16 \n", " 3 ... 14 8 \n", " 4 ... 8 6 \n", "\n", "Group \\\n", "VCF_columns AD FREQ \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 2 10% \n", " 1 3 12% \n", " 2 2 11.11% \n", " 3 5 38.46% \n", " 4 2 25% \n", "\n", "Group INFO \\\n", "VCF_columns DP4 DP \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 8,10,0,2 89 \n", " 1 10,12,0,3 92 \n", " 2 7,9,0,2 71 \n", " 3 5,3,1,4 59 \n", " 4 0,6,0,2 42 \n", "\n", "Group \\\n", "VCF_columns GPV SPV \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 1E0 5.0789E-2 \n", " 1 1E0 1.8932E-2 \n", " 2 1E0 6.3354E-2 \n", " 3 1E0 4.5001E-3 \n", " 4 1E0 3.252E-2 \n", "\n", "Group \n", "VCF_columns SS SSC \n", "TUMOR NORMAL \n", "TCGA-DU-5870-01A-11D-1705-08 TCGA-DU-5870-10A-01D-1705-08 0 2 12 \n", " 1 2 17 \n", " 2 2 11 \n", " 3 2 23 \n", " 4 2 14 \n", "\n", "[5 rows x 31 columns]" ] }, "execution_count": 25, "metadata": {}, "output_type": "execute_result" } ], "source": [ "varscanVcfMerged.head()" ] }, { "cell_type": "code", "execution_count": 26, "metadata": {}, "outputs": [], "source": [ "topTcgaVcfDf=varscanVcfMerged['one_vcf_df'].groupby(\n", " ['CHROM','POS','ALT']).size().sort_values(ascending=False).reset_index(name='Count')#.iloc[:100]" ] }, { "cell_type": "code", "execution_count": 27, "metadata": {}, "outputs": [], "source": [ "#topTcgaVcfDf.iloc[:100]" ] }, { "cell_type": "code", "execution_count": 28, "metadata": {}, "outputs": [], "source": [ "#371/524.0" ] }, { "cell_type": "code", "execution_count": 29, "metadata": {}, "outputs": [], "source": [ "#topTcgaVcfDf['Count']" ] }, { "cell_type": "code", "execution_count": 30, "metadata": { "scrolled": true }, "outputs": [], "source": [ "topTcgaVcfDf['CHROM']=topTcgaVcfDf['CHROM'].str.replace('chr','')" ] }, { "cell_type": "code", "execution_count": 31, "metadata": {}, "outputs": [], "source": [ "tmpDf=topTcgaVcfDf.set_index(['CHROM','POS'],drop=False)" ] }, { "cell_type": "code", "execution_count": 32, "metadata": {}, "outputs": [], "source": [ "targetted_multI=vcfDf.set_index(['Chr','Pos']).index" ] }, { "cell_type": "code", "execution_count": 84, "metadata": {}, "outputs": [], "source": [ "#altBaseS=vcfDf.set_index(['Chr','Pos'])['AltBase'].str.split(',',expand=True).stack()\n", "\n", "#chrPosAltI=altBaseS.reset_index(name='AltBase').set_index(['Chr','Pos','AltBase']).index" ] }, { "cell_type": "code", "execution_count": 114, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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CHROMPOSALTCountin_targeted_ref
CHROMPOS
22082483882208248388T371True
177673803177673803A59True
11782266161178226616G31False
16157637471615763747C30False
31860799383186079938G29False
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" ], "text/plain": [ " CHROM POS ALT Count in_targeted_ref\n", "CHROM POS \n", "2 208248388 2 208248388 T 371 True\n", "17 7673803 17 7673803 A 59 True\n", "11 78226616 11 78226616 G 31 False\n", "16 15763747 16 15763747 C 30 False\n", "3 186079938 3 186079938 G 29 False" ] }, "execution_count": 114, "metadata": {}, "output_type": "execute_result" } ], "source": [ "tmpDf.head()" ] }, { "cell_type": "code", "execution_count": 107, "metadata": { "scrolled": true }, "outputs": [], "source": [ "tmpDf['in_targeted_ref']=tmpDf.index.isin(targetted_multI)" ] }, { "cell_type": "code", "execution_count": 113, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "77" ] }, "execution_count": 113, "metadata": {}, "output_type": "execute_result" } ], "source": [ "#tmpDf['in_targeted_ref']\n", "tmpDf[tmpDf['Count']>20]['in_targeted_ref'].sum()\n", "len(tmpDf[tmpDf['Count']>20]['in_targeted_ref'])" ] }, { "cell_type": "code", "execution_count": 118, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0.014626543579906486" ] }, "execution_count": 118, "metadata": {}, "output_type": "execute_result" } ], "source": [ "tmpDf['in_targeted_ref'].mean()" ] }, { "cell_type": "code", "execution_count": 34, "metadata": {}, "outputs": [], "source": [ "topTcgaVcfDf_inTargeted=tmpDf[tmpDf['in_targeted_ref']]" ] }, { "cell_type": "code", "execution_count": 92, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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CHROMPOSALTCount
CHROMPOS
22082483882208248388T371
177673803177673803A59
11467782291146778229C20
619550991161955099C19
22082483892208248389A17
14320921341432092134A14
20106453682010645368G13
22082483892208248389C12
15900886061590088606T12
177673802177673802T11
81428777588142877758C11
X24789042X24789042T11
21785544962178554496C10
11096905161109690516C10
177674872177674872C10
13950628931395062893A9
629944050629944050A9
22082483892208248389T9
10386410861038641086A9
310063977310063977C9
X24788994X24788994T9
126018369126018369G9
499510331249951033C8
680127535680127535T8
177674220177674220T8
7675076177675076C8
7675088177675088T8
12157868111215786811C8
71407347867140734786A8
19410093581941009358G8
..................
4630218746302187A1
800520148005201T1
765412847654128T1
31956994343195699434C1
1936456263193645626A1
49477304947730T1
31962300993196230099T1
1007287803100728780T1
1134017673113401767G1
1143390103114339010T1
1143393843114339384G1
97993153397993153A1
73062217373062217C1
97768199397768199T1
78688812378688812A1
78614806378614806A1
78627272378627272A1
87259754387259754A1
1322434653132243465G1
1425475973142547597T1
1389464283138946428T1
1394950613139495061G1
1222613953122261395C1
1222837643122283764A1
1236140283123614028G1
1198763933119876393TA1
1206384903120638490A1
1295286833129528683A1
1295287083129528708G1
1261316623126131662A1
\n", "

2196 rows × 4 columns

\n", "
" ], "text/plain": [ " CHROM POS ALT Count\n", "CHROM POS \n", "2 208248388 2 208248388 T 371\n", "17 7673803 17 7673803 A 59\n", "11 46778229 11 46778229 C 20\n", " 61955099 11 61955099 C 19\n", "2 208248389 2 208248389 A 17\n", "14 32092134 14 32092134 A 14\n", "20 10645368 20 10645368 G 13\n", "2 208248389 2 208248389 C 12\n", "15 90088606 15 90088606 T 12\n", "17 7673802 17 7673802 T 11\n", "8 142877758 8 142877758 C 11\n", "X 24789042 X 24789042 T 11\n", "2 178554496 2 178554496 C 10\n", "1 109690516 1 109690516 C 10\n", "17 7674872 17 7674872 C 10\n", "13 95062893 13 95062893 A 9\n", "6 29944050 6 29944050 A 9\n", "2 208248389 2 208248389 T 9\n", "10 38641086 10 38641086 A 9\n", "3 10063977 3 10063977 C 9\n", "X 24788994 X 24788994 T 9\n", "12 6018369 12 6018369 G 9\n", " 49951033 12 49951033 C 8\n", "6 80127535 6 80127535 T 8\n", "17 7674220 17 7674220 T 8\n", " 7675076 17 7675076 C 8\n", " 7675088 17 7675088 T 8\n", "1 215786811 1 215786811 C 8\n", "7 140734786 7 140734786 A 8\n", "19 41009358 19 41009358 G 8\n", "... ... ... .. ...\n", "4 6302187 4 6302187 A 1\n", " 8005201 4 8005201 T 1\n", " 7654128 4 7654128 T 1\n", "3 195699434 3 195699434 C 1\n", " 193645626 3 193645626 A 1\n", "4 947730 4 947730 T 1\n", "3 196230099 3 196230099 T 1\n", " 100728780 3 100728780 T 1\n", " 113401767 3 113401767 G 1\n", " 114339010 3 114339010 T 1\n", " 114339384 3 114339384 G 1\n", " 97993153 3 97993153 A 1\n", " 73062217 3 73062217 C 1\n", " 97768199 3 97768199 T 1\n", " 78688812 3 78688812 A 1\n", " 78614806 3 78614806 A 1\n", " 78627272 3 78627272 A 1\n", " 87259754 3 87259754 A 1\n", " 132243465 3 132243465 G 1\n", " 142547597 3 142547597 T 1\n", " 138946428 3 138946428 T 1\n", " 139495061 3 139495061 G 1\n", " 122261395 3 122261395 C 1\n", " 122283764 3 122283764 A 1\n", " 123614028 3 123614028 G 1\n", " 119876393 3 119876393 TA 1\n", " 120638490 3 120638490 A 1\n", " 129528683 3 129528683 A 1\n", " 129528708 3 129528708 G 1\n", " 126131662 3 126131662 A 1\n", "\n", "[2196 rows x 4 columns]" ] }, "execution_count": 92, "metadata": {}, "output_type": "execute_result" } ], "source": [ "topTcgaVcfDf_inTargeted" ] }, { "cell_type": "code", "execution_count": 36, "metadata": {}, "outputs": [], "source": [ "threshold=2" ] }, { "cell_type": "code", "execution_count": 45, "metadata": { "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9982105610204264, 'vcfIndex': ('2', 208248388), 'rocauc': 0.9842904603701946, 'rnaseq_rd': 133.82251908396947, 'rnaseq_n': 519}]\n", "1\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5436157339090322, 'vcfIndex': ('17', 7673803), 'rocauc': 0.9452658347625525, 'rnaseq_rd': 122.07633587786259, 'rnaseq_n': 520}]\n", "2\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8651493930905695, 'vcfIndex': ('2', 208248389), 'rocauc': 0.8964102564102564, 'rnaseq_rd': 133.3759541984733, 'rnaseq_n': 519}]\n", "3\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9915456162454604, 'vcfIndex': ('14', 32092134), 'rocauc': 0.5077669902912622, 'rnaseq_rd': 38.31297709923664, 'rnaseq_n': 457}]\n", "4\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9517857142857143, 'vcfIndex': ('2', 208248389), 'rocauc': 0.9577020202020201, 'rnaseq_rd': 133.3759541984733, 'rnaseq_n': 519}]\n", "5\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 1.0, 'vcfIndex': ('15', 90088606), 'rocauc': 1.0, 'rnaseq_rd': 353.8416030534351, 'rnaseq_n': 524}]\n", "6\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.954090909090909, 'vcfIndex': ('17', 7673802), 'rocauc': 0.9488888888888888, 'rnaseq_rd': 121.37284894837477, 'rnaseq_n': 520}]\n", "7\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7384169884169884, 'vcfIndex': ('8', 142877758), 'rocauc': 0.5, 'rnaseq_rd': 0.0019305019305019305, 'rnaseq_n': 0}]\n", "8\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9895369944981679, 'vcfIndex': ('X', 24789042), 'rocauc': 0.5035885167464115, 'rnaseq_rd': 5.2629482071713145, 'rnaseq_n': 91}]\n", "9\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9999400689281579, 'vcfIndex': ('1', 109690516), 'rocauc': 0.9965412883700822, 'rnaseq_rd': 210.7767175572519, 'rnaseq_n': 513}]\n", "10\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9751543209876543, 'vcfIndex': ('17', 7674872), 'rocauc': 0.9993704752911552, 'rnaseq_rd': 59.13549618320611, 'rnaseq_n': 496}]\n", "11\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.6849247001118479, 'vcfIndex': ('6', 29944050), 'rocauc': 0.6133071391504189, 'rnaseq_rd': 16.24236641221374, 'rnaseq_n': 286}]\n", "12\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 1.0, 'vcfIndex': ('2', 208248389), 'rocauc': 1.0, 'rnaseq_rd': 133.3759541984733, 'rnaseq_n': 519}]\n", "13\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.998226347522553, 'vcfIndex': ('X', 24788994), 'rocauc': 0.6949317738791423, 'rnaseq_rd': 1291.3740458015268, 'rnaseq_n': 524}]\n", "14\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9941271648588722, 'vcfIndex': ('12', 6018369), 'rocauc': 0.6216216216216216, 'rnaseq_rd': 36.32053742802303, 'rnaseq_n': 431}]\n", "15\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8950736763236764, 'vcfIndex': ('17', 7674220), 'rocauc': 0.9293664383561644, 'rnaseq_rd': 124.63671128107075, 'rnaseq_n': 520}]\n", "16\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8500000000000001, 'vcfIndex': ('17', 7675076), 'rocauc': 0.9983935742971888, 'rnaseq_rd': 91.69083969465649, 'rnaseq_n': 510}]\n", "17\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7798582995951417, 'vcfIndex': ('17', 7675088), 'rocauc': 0.7655677655677655, 'rnaseq_rd': 107.20537428023033, 'rnaseq_n': 509}]\n", "18\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9242947346041334, 'vcfIndex': ('12', 6018901), 'rocauc': 0.6154363110008272, 'rnaseq_rd': 79.05152671755725, 'rnaseq_n': 502}]\n", "19\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.967687875497635, 'vcfIndex': ('6', 31271836), 'rocauc': 0.6717948717948719, 'rnaseq_rd': 950.9332061068702, 'rnaseq_n': 524}]\n", "20\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5249729346906801, 'vcfIndex': ('6', 31356729), 'rocauc': 0.4567348881485007, 'rnaseq_rd': 1370.7922330097088, 'rnaseq_n': 502}]\n", "21\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9664750957854407, 'vcfIndex': ('7', 117548682), 'rocauc': 0.5, 'rnaseq_rd': 0.39272030651340994, 'rnaseq_n': 1}]\n", "22\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8435959942590133, 'vcfIndex': ('6', 29943406), 'rocauc': 0.4709963985594237, 'rnaseq_rd': 2902.0687022900765, 'rnaseq_n': 522}]\n", "23\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.6240315082644627, 'vcfIndex': ('6', 29943422), 'rocauc': 0.5176321912862072, 'rnaseq_rd': 2319.403474903475, 'rnaseq_n': 480}]\n", "24\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9999999999999998, 'vcfIndex': ('17', 7674221), 'rocauc': 1.0, 'rnaseq_rd': 123.95602294455067, 'rnaseq_n': 520}]\n", "25\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9769153916419274, 'vcfIndex': ('7', 142750675), 'rocauc': 0.49849488260084285, 'rnaseq_rd': 0.3199152542372881, 'rnaseq_n': 3}]\n", "26\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8815028901734103, 'vcfIndex': ('7', 152238825), 'rocauc': 0.5, 'rnaseq_rd': 9.790076335877863, 'rnaseq_n': 212}]\n", "27\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7770187787215652, 'vcfIndex': ('17', 7673776), 'rocauc': 0.8756735950731331, 'rnaseq_rd': 121.84351145038168, 'rnaseq_n': 518}]\n", "28\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5016891891891891, 'vcfIndex': ('9', 128257486), 'rocauc': 0.5, 'rnaseq_rd': 84.02579365079364, 'rnaseq_n': 472}]\n", "29\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9621421257423716, 'vcfIndex': ('7', 142750600), 'rocauc': 0.5010526315789474, 'rnaseq_rd': 0.21595330739299612, 'rnaseq_n': 4}]\n", "30\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.11665167191482981, 'vcfIndex': ('7', 55165350), 'rocauc': 0.6013007054673721, 'rnaseq_rd': 300.21946564885496, 'rnaseq_n': 481}]\n", "31\n", "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9994991036591797, 'vcfIndex': ('12', 2685853), 'rocauc': 0.7816091954022988, 'rnaseq_rd': 2.092741935483871, 'rnaseq_n': 8}]\n", "32\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9612392525801189, 'vcfIndex': ('4', 144120554), 'rocauc': 0.4796998031496063, 'rnaseq_rd': 0.49236641221374045, 'rnaseq_n': 3}]\n", "33\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8670477230214318, 'vcfIndex': ('6', 29944118), 'rocauc': 0.6404452281243111, 'rnaseq_rd': 18.980582524271846, 'rnaseq_n': 315}]\n", "34\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8319444444444444, 'vcfIndex': ('17', 7674230), 'rocauc': 0.8713235294117647, 'rnaseq_rd': 120.80534351145039, 'rnaseq_n': 519}]\n", "35\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7957251082251082, 'vcfIndex': ('17', 7674945), 'rocauc': 0.869140625, 'rnaseq_rd': 99.9675572519084, 'rnaseq_n': 513}]\n", "36\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9917339294729354, 'vcfIndex': ('19', 14766987), 'rocauc': 0.5071428571428571, 'rnaseq_rd': 1.315487571701721, 'rnaseq_n': 9}]\n", "37\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.718190399137001, 'vcfIndex': ('7', 55154129), 'rocauc': 0.8454455445544554, 'rnaseq_rd': 182.2767175572519, 'rnaseq_n': 464}]\n", "38\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9565217391304348, 'vcfIndex': ('7', 127611678), 'rocauc': 0.5, 'rnaseq_rd': 0.06451612903225806, 'rnaseq_n': 0}]\n", "39\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9811409712399812, 'vcfIndex': ('1', 235775088), 'rocauc': 0.504950495049505, 'rnaseq_rd': 0.0136986301369863, 'rnaseq_n': 0}]\n", "40\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9224825164827356, 'vcfIndex': ('1', 173828313), 'rocauc': 0.501444707118466, 'rnaseq_rd': 2.292089249492901, 'rnaseq_n': 1}]\n", "41\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9913282738681911, 'vcfIndex': ('2', 166281810), 'rocauc': 0.5231741573033708, 'rnaseq_rd': 1.3317073170731708, 'rnaseq_n': 15}]\n", "42\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9444444444444444, 'vcfIndex': ('6', 32664778), 'rocauc': 0.5, 'rnaseq_rd': 2.370212765957447, 'rnaseq_n': 8}]\n", "43\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.07298916724566964, 'vcfIndex': ('6', 31270232), 'rocauc': 0.5693114455084359, 'rnaseq_rd': 747.1783567134269, 'rnaseq_n': 401}]\n", "44\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8904019236433559, 'vcfIndex': ('12', 52897420), 'rocauc': 0.5084404879657105, 'rnaseq_rd': 7.585603112840467, 'rnaseq_n': 71}]\n", "45\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.559769267265185, 'vcfIndex': ('6', 29942825), 'rocauc': 0.797976477463657, 'rnaseq_rd': 2793.31106870229, 'rnaseq_n': 524}]\n", "46\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.46834657753136016, 'vcfIndex': ('6', 29942845), 'rocauc': 0.4998989898989899, 'rnaseq_rd': 2905.9483747609943, 'rnaseq_n': 517}]\n", "47\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9229132597203707, 'vcfIndex': ('6', 29944102), 'rocauc': 0.7980787271567413, 'rnaseq_rd': 21.58206106870229, 'rnaseq_n': 368}]\n", "48\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8023328381245963, 'vcfIndex': ('6', 29944103), 'rocauc': 0.7773660377358491, 'rnaseq_rd': 21.608778625954198, 'rnaseq_n': 371}]\n", "49\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9422616789380488, 'vcfIndex': ('6', 29944168), 'rocauc': 0.9607098982098983, 'rnaseq_rd': 4361.543893129771, 'rnaseq_n': 524}]\n", "50\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5614637623652268, 'vcfIndex': ('12', 6018910), 'rocauc': 0.5450518969219758, 'rnaseq_rd': 73.97137404580153, 'rnaseq_n': 500}]\n", "51\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9961163900517636, 'vcfIndex': ('5', 236441), 'rocauc': 0.5004950495049505, 'rnaseq_rd': 189.5229007633588, 'rnaseq_n': 524}]\n", "52\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7945205479452055, 'vcfIndex': ('3', 10064460), 'rocauc': 0.5, 'rnaseq_rd': 0.26705653021442494, 'rnaseq_n': 0}]\n", "53\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5047709923664122, 'vcfIndex': ('3', 179199690), 'rocauc': 0.5, 'rnaseq_rd': 10.774809160305344, 'rnaseq_n': 237}]\n", "54\n", "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8408395548245163, 'vcfIndex': ('6', 32661364), 'rocauc': 0.6422820109976433, 'rnaseq_rd': 113.46332046332046, 'rnaseq_n': 358}]\n", "55\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9645215692947171, 'vcfIndex': ('6', 32661416), 'rocauc': 0.6010173721086477, 'rnaseq_rd': 214.6240458015267, 'rnaseq_n': 489}]\n", "56\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.035856045886774615, 'vcfIndex': ('22', 42127537), 'rocauc': 0.4298987568883762, 'rnaseq_rd': 17.948374760994263, 'rnaseq_n': 355}]\n", "57\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9957796476538225, 'vcfIndex': ('6', 32661360), 'rocauc': 0.4311175337186898, 'rnaseq_rd': 97.21606118546845, 'rnaseq_n': 337}]\n", "58\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9604493382073076, 'vcfIndex': ('6', 29943620), 'rocauc': 0.546979136482179, 'rnaseq_rd': 12.659655831739961, 'rnaseq_n': 238}]\n", "59\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7750889986870693, 'vcfIndex': ('6', 29944059), 'rocauc': 0.6722366428725935, 'rnaseq_rd': 17.18320610687023, 'rnaseq_n': 315}]\n", "60\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9842224503338726, 'vcfIndex': ('6', 29944067), 'rocauc': 0.8036034099863886, 'rnaseq_rd': 16.535372848948374, 'rnaseq_n': 315}]\n", "61\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 1.0, 'vcfIndex': ('17', 7673802), 'rocauc': 1.0, 'rnaseq_rd': 121.37284894837477, 'rnaseq_n': 520}]\n", "62\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.916660412249664, 'vcfIndex': ('6', 31270233), 'rocauc': 0.916426282051282, 'rnaseq_rd': 759.4716599190283, 'rnaseq_n': 399}]\n", "63\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.556916142332809, 'vcfIndex': ('6', 31270214), 'rocauc': 0.5332680436847104, 'rnaseq_rd': 553.9027484143763, 'rnaseq_n': 283}]\n", "64\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.025849160991704853, 'vcfIndex': ('6', 29944124), 'rocauc': 0.5529550209205021, 'rnaseq_rd': 1296.3773946360154, 'rnaseq_n': 454}]\n", "65\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9161017961737645, 'vcfIndex': ('6', 29944144), 'rocauc': 0.7403100775193798, 'rnaseq_rd': 3459.543893129771, 'rnaseq_n': 524}]\n", "66\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.028600888967876898, 'vcfIndex': ('6', 31356377), 'rocauc': 0.5097844934357196, 'rnaseq_rd': 1758.949290060852, 'rnaseq_n': 484}]\n", "67\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 1.0, 'vcfIndex': ('17', 7676044), 'rocauc': 1.0, 'rnaseq_rd': 115.8530534351145, 'rnaseq_n': 516}]\n", "68\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.3806954647613297, 'vcfIndex': ('6', 29944132), 'rocauc': 0.4973299863076221, 'rnaseq_rd': 2479.959923664122, 'rnaseq_n': 512}]\n", "69\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.0699742223941922, 'vcfIndex': ('6', 29944135), 'rocauc': 0.5997474747474747, 'rnaseq_rd': 2769.6526717557254, 'rnaseq_n': 516}]\n", "70\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.002136752136752137, 'vcfIndex': ('1', 237591774), 'rocauc': 0.4957081545064378, 'rnaseq_rd': 2.042345276872964, 'rnaseq_n': 16}]\n", "71\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8084342436412314, 'vcfIndex': ('6', 29944376), 'rocauc': 0.44202660984072345, 'rnaseq_rd': 3416.6507633587785, 'rnaseq_n': 524}]\n", "72\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.23266786055330774, 'vcfIndex': ('6', 29944151), 'rocauc': 0.6030430131741921, 'rnaseq_rd': 3618.6469465648856, 'rnaseq_n': 524}]\n", "73\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7412910611080881, 'vcfIndex': ('6', 32664883), 'rocauc': 0.6214872353057589, 'rnaseq_rd': 315.19847328244276, 'rnaseq_n': 506}]\n", "74\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.02631578947368421, 'vcfIndex': ('6', 32664926), 'rocauc': 0.7848101265822784, 'rnaseq_rd': 162.30679611650484, 'rnaseq_n': 436}]\n", "75\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8632025962683821, 'vcfIndex': ('10', 4999206), 'rocauc': 0.488385896243062, 'rnaseq_rd': 31.936902485659655, 'rnaseq_n': 395}]\n", "76\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8159076655973716, 'vcfIndex': ('6', 32661393), 'rocauc': 0.9283611212738898, 'rnaseq_rd': 215.2118320610687, 'rnaseq_n': 493}]\n", "77\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.3807472567845822, 'vcfIndex': ('6', 32661384), 'rocauc': 0.5965269883579634, 'rnaseq_rd': 191.68269230769232, 'rnaseq_n': 480}]\n", "78\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7789901876748874, 'vcfIndex': ('6', 32661333), 'rocauc': 0.6450605077908724, 'rnaseq_rd': 2.581081081081081, 'rnaseq_n': 27}]\n", "79\n", "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.007407407407407408, 'vcfIndex': ('12', 57099758), 'rocauc': 0.48120300751879697, 'rnaseq_rd': 1.3076923076923077, 'rnaseq_n': 0}]\n", "80\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.6419342359767892, 'vcfIndex': ('15', 90088606), 'rocauc': 0.7953125, 'rnaseq_rd': 353.8416030534351, 'rnaseq_n': 524}]\n", "81\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9939342885587993, 'vcfIndex': ('16', 2106849), 'rocauc': 0.5828059071729957, 'rnaseq_rd': 1127.1335877862596, 'rnaseq_n': 523}]\n", "82\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9955220203818337, 'vcfIndex': ('6', 29942795), 'rocauc': 0.9892205638474295, 'rnaseq_rd': 1391.3957528957528, 'rnaseq_n': 517}]\n", "83\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9650234297119815, 'vcfIndex': ('6', 29942858), 'rocauc': 0.8564967105263157, 'rnaseq_rd': 2437.3996101364523, 'rnaseq_n': 510}]\n", "84\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.06198758775750919, 'vcfIndex': ('6', 29942916), 'rocauc': 0.5738773274917853, 'rnaseq_rd': 2200.085877862595, 'rnaseq_n': 524}]\n", "85\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7566018792759621, 'vcfIndex': ('3', 75630855), 'rocauc': 0.6696047008547009, 'rnaseq_rd': 2.614503816793893, 'rnaseq_n': 29}]\n", "86\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.22410008389567063, 'vcfIndex': ('3', 75630794), 'rocauc': 0.5880094043887147, 'rnaseq_rd': 1.72848948374761, 'rnaseq_n': 13}]\n", "87\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.54953216374269, 'vcfIndex': ('3', 49686483), 'rocauc': 0.523888888888889, 'rnaseq_rd': 7.1495098039215685, 'rnaseq_n': 103}]\n", "88\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.6836120401939296, 'vcfIndex': ('6', 29943463), 'rocauc': 0.49917875718587446, 'rnaseq_rd': 1443.973282442748, 'rnaseq_n': 519}]\n", "89\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7588104445940389, 'vcfIndex': ('6', 29943667), 'rocauc': 0.5203029899151451, 'rnaseq_rd': 3.0599613152804643, 'rnaseq_n': 35}]\n", "90\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8581118493909192, 'vcfIndex': ('3', 179234284), 'rocauc': 0.899412915851272, 'rnaseq_rd': 66.98473282442748, 'rnaseq_n': 523}]\n", "91\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8447420634920635, 'vcfIndex': ('17', 7674888), 'rocauc': 0.8747499999999999, 'rnaseq_rd': 88.14312977099236, 'rnaseq_n': 513}]\n", "92\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 1.0, 'vcfIndex': ('17', 7674256), 'rocauc': 1.0, 'rnaseq_rd': 117.52671755725191, 'rnaseq_n': 517}]\n", "93\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.4933284989122553, 'vcfIndex': ('17', 7673704), 'rocauc': 0.6921875, 'rnaseq_rd': 82.12022900763358, 'rnaseq_n': 512}]\n", "94\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.403969764837626, 'vcfIndex': ('17', 21416556), 'rocauc': 0.49095305832147934, 'rnaseq_rd': 3.7862745098039214, 'rnaseq_n': 55}]\n", "95\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.6664588229150348, 'vcfIndex': ('8', 100709671), 'rocauc': 0.5005375347544022, 'rnaseq_rd': 986.1145038167939, 'rnaseq_n': 523}]\n", "96\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9511253035546972, 'vcfIndex': ('3', 183959847), 'rocauc': 0.5092165898617511, 'rnaseq_rd': 0.047244094488188976, 'rnaseq_n': 0}]\n", "97\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.6714060031595577, 'vcfIndex': ('17', 31350209), 'rocauc': 0.7941747572815535, 'rnaseq_rd': 94.85412667946257, 'rnaseq_n': 501}]\n", "98\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5306679511881823, 'vcfIndex': ('5', 68295269), 'rocauc': 0.7383040935672515, 'rnaseq_rd': 380.9942748091603, 'rnaseq_n': 518}]\n", "99\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8707806362334788, 'vcfIndex': ('22', 24627926), 'rocauc': 0.46257135765698687, 'rnaseq_rd': 23.572519083969464, 'rnaseq_n': 495}]\n", "100\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7549019607843137, 'vcfIndex': ('20', 8788776), 'rocauc': 0.5, 'rnaseq_rd': 0.0019569471624266144, 'rnaseq_n': 0}]\n", "101\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.28904720805141565, 'vcfIndex': ('6', 31271875), 'rocauc': 0.5511204481792716, 'rnaseq_rd': 13.273622047244094, 'rnaseq_n': 205}]\n", "102\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.31859276729559743, 'vcfIndex': ('6', 31271839), 'rocauc': 0.5044341216216216, 'rnaseq_rd': 977.5515267175573, 'rnaseq_n': 524}]\n", "103\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9532577753359472, 'vcfIndex': ('6', 31356399), 'rocauc': 0.5825, 'rnaseq_rd': 2469.6111111111113, 'rnaseq_n': 522}]\n", "104\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9719473639237802, 'vcfIndex': ('6', 31270194), 'rocauc': 0.5010638297872341, 'rnaseq_rd': 0.8383233532934131, 'rnaseq_n': 6}]\n", "105\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.8618412368175279, 'vcfIndex': ('5', 256357), 'rocauc': 0.5556620209059233, 'rnaseq_rd': 585.263358778626, 'rnaseq_n': 524}]\n", "106\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9899327619329097, 'vcfIndex': ('1', 109690525), 'rocauc': 0.8125, 'rnaseq_rd': 274.3692307692308, 'rnaseq_n': 516}]\n", "107\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5019120458891013, 'vcfIndex': ('19', 48978170), 'rocauc': 0.5, 'rnaseq_rd': 3.6583969465648853, 'rnaseq_n': 37}]\n", "108\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9989016231568906, 'vcfIndex': ('11', 49200333), 'rocauc': 0.7138728323699421, 'rnaseq_rd': 43.784351145038165, 'rnaseq_n': 387}]\n", "109\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7739130434782608, 'vcfIndex': ('X', 77684004), 'rocauc': 0.6, 'rnaseq_rd': 34.54780876494024, 'rnaseq_n': 395}]\n", "110\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9501618327788225, 'vcfIndex': ('16', 89100658), 'rocauc': 0.5056053811659192, 'rnaseq_rd': 0.03006012024048096, 'rnaseq_n': 0}]\n", "111\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9944934509489441, 'vcfIndex': ('15', 75689744), 'rocauc': 0.5209302325581395, 'rnaseq_rd': 43.25335892514396, 'rnaseq_n': 421}]\n", "112\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.9983498349834983, 'vcfIndex': ('7', 103661529), 'rocauc': 0.5, 'rnaseq_rd': 0.0, 'rnaseq_n': 0}]\n", "113\n", "failed\n", "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.3868616317146241, 'vcfIndex': ('15', 48465935), 'rocauc': 0.5025573318108288, 'rnaseq_rd': 0.025477707006369428, 'rnaseq_n': 0}]\n", "114\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7978365384615385, 'vcfIndex': ('5', 68293310), 'rocauc': 0.8737887596899224, 'rnaseq_rd': 133.89503816793894, 'rnaseq_n': 504}]\n", "115\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.007692307692307693, 'vcfIndex': ('18', 62252665), 'rocauc': 0.49609375, 'rnaseq_rd': 23.114341085271317, 'rnaseq_n': 442}]\n", "116\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.5844827586206897, 'vcfIndex': ('17', 7675148), 'rocauc': 0.7488452655889145, 'rnaseq_rd': 112.54302103250478, 'rnaseq_n': 510}]\n", "117\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7696078431372548, 'vcfIndex': ('17', 7675140), 'rocauc': 0.75, 'rnaseq_rd': 115.20458891013385, 'rnaseq_n': 512}]\n", "118\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide\n", " recall = tps / tps[-1]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "failed\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 0.7291033594906903, 'vcfIndex': ('11', 17494423), 'rocauc': 0.6473647306298936, 'rnaseq_rd': 2.5657620041753653, 'rnaseq_n': 34}]\n", "119\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[{'auprc': 1.0, 'vcfIndex': ('17', 7675124), 'rocauc': 1.0, 'rnaseq_rd': 115.92366412213741, 'rnaseq_n': 513}]\n", "120\n" ] }, { "ename": "KeyboardInterrupt", "evalue": "", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[1;32m 15\u001b[0m \u001b[0mwindow_size\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 16\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 17\u001b[0;31m 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"\u001b[0;32m~/anaconda3/lib/python3.6/site-packages/pandas/core/indexes/base.py\u001b[0m in \u001b[0;36mcmp_method\u001b[0;34m(self, other)\u001b[0m\n\u001b[1;32m 108\u001b[0m \u001b[0;32mwith\u001b[0m \u001b[0mwarnings\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcatch_warnings\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mrecord\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mTrue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 109\u001b[0m \u001b[0;32mwith\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0merrstate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mall\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;34m'ignore'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 110\u001b[0;31m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mop\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalues\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0masarray\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mother\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 111\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 112\u001b[0m \u001b[0;31m# technically we could support bool dtyped Index\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;31mKeyboardInterrupt\u001b[0m: " ] } ], "source": [ "#threshold=2\n", "\n", "#selectedBase='T'\n", "#query_chromosome, qeury_corrdinate='2',208248388\n", "failedS_L=[]\n", "roc_auc_l=[]\n", "#m_chr=targetted_df.index.get_level_values('Chr')==query_chromosome\n", "Pos_array=targetted_df.index.get_level_values('Pos')\n", "successCount=0\n", "for vcfIndex,vcfDfRowS in topTcgaVcfDf_inTargeted.iterrows():\n", " try:\n", " query_chromosome,qeury_corrdinate=vcfDfRowS['CHROM'].replace('chr',''),vcfDfRowS['POS']\n", " selectedBases=vcfDfRowS['ALT']\n", "\n", " window_size=0\n", " \n", " m_pos=(Pos_array>=(qeury_corrdinate-window_size))&(Pos_array<=(qeury_corrdinate+window_size))\n", " if m_pos.sum()<10:\n", " print ('failed')\n", " continue\n", " m_qual=targetted_df['AverageBaseQuality']>=30\n", " #if m_pos.sum()>=0:\n", " targetted_df_sub=targetted_df[m_pos&m_qual]\n", "\n", " index_metaDf=targetted_df_sub.index.to_frame()\n", "\n", " index_metaDf['sample_barcode']=manifest_df_w_RNA_WXS.set_index('file_id').loc[index_metaDf['Run_digits']]['sample_barcode'].values\n", "\n", " multI=index_metaDf.set_index(['sample_barcode','Run_digits','Chr','Pos','base']).index\n", " targetted_df_sub.index=multI\n", "\n", "\n", " rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='RNA-Seq']['file_id'].unique()\n", " m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(rnaseq_uuids)\n", " rnaseq_df=targetted_df_sub[m_uuid]\n", "\n", " groupings_L=['sample_barcode','Chr','Pos','base']\n", "\n", " rnaseq_df=rnaseq_df.groupby(groupings_L).first()\n", "\n", " wxs_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='WXS']['file_id'].unique()\n", " m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(wxs_uuids)\n", " wxs_df=targetted_df_sub[m_uuid]\n", "\n", " wxs_df=wxs_df.groupby(groupings_L).first()\n", "\n", " mergedDf=pd.concat([ rnaseq_df,wxs_df],axis=1,keys=['rna-seq','wxs'])\n", "\n", " mergedDf['wxs']['ReadDepth']=mergedDf['wxs']['ReadDepth'].fillna(0)\n", "\n", " #mergedDf\n", "\n", " #for the whole \n", "\n", " from sklearn import metrics\n", "\n", " #### get the homozygous\n", "\n", " wxsWithDataDf=mergedDf#[mergedDf['wxs']['ReadDepth']>=threshold]\n", "\n", " sampleRdS=wxsWithDataDf['wxs'].groupby('sample_barcode')['ReadDepth'].sum()\n", " sampleRdS_rnaseq=wxsWithDataDf['rna-seq'].groupby('sample_barcode')['ReadDepth'].sum()\n", " \n", " xwsSamplesWithCoverage=sampleRdS.index[sampleRdS>=threshold]\n", "\n", " m_base=wxsWithDataDf.index.get_level_values('base')==selectedBase\n", "\n", " m_wxs_coverage=wxsWithDataDf.index.get_level_values('sample_barcode').isin(xwsSamplesWithCoverage)\n", "\n", " m_valid_all=mergedDf.notnull().all(axis=1)\n", "\n", " wxsWithDataDf_base=wxsWithDataDf[m_base&m_wxs_coverage]\n", " wxsWithDataDf_base['rna-seq']=wxsWithDataDf_base['rna-seq'].fillna(0)\n", " y_true=wxsWithDataDf_base['wxs']['ReadDepth']>=threshold\n", " \n", " precision,recall,_=metrics.precision_recall_curve(y_true,\n", " wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0))\n", " roc_auc=metrics.roc_auc_score(y_true,\n", " wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0))\n", " auprc=metrics.auc(recall,precision)\n", " #print (auprc,wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0).mean())\n", " myResultL=[{'auprc':auprc,'vcfIndex':vcfIndex,\"rocauc\":roc_auc,\n", " 'rnaseq_rd':sampleRdS_rnaseq.mean(),\n", " 'rnaseq_n':((sampleRdS_rnaseq>=10).sum())}]\n", "\n", " roc_auc_l+= myResultL \n", " print (myResultL)\n", " successCount+=1\n", " print (successCount)\n", " except ValueError:#ValueError\n", " failedS_L.append(vcfDfRowS)\n", " print ('failed')\n", "#group=wxsWithDataDf.groupby('base')\n", "\n", "#for base, df in group:\n", "# break" ] }, { "cell_type": "code", "execution_count": 46, "metadata": { "scrolled": true }, "outputs": [], "source": [ "praucDf=pd.DataFrame(roc_auc_l).dropna()#.to_frame('prauc')" ] }, { "cell_type": "code", "execution_count": 51, "metadata": { "scrolled": true }, "outputs": [], "source": [ "praucDf['Chr']=praucDf.vcfIndex.apply(lambda L:L[0])\n", "praucDf['Pos']=praucDf.vcfIndex.apply(lambda L:int(L[1]))" ] }, { "cell_type": "code", "execution_count": 69, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:1: FutureWarning: 'CHROM' is both an index level and a column label.\n", "Defaulting to column, but this will raise an ambiguity error in a future version\n", " \"\"\"Entry point for launching an IPython kernel.\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:1: FutureWarning: 'POS' is both an index level and a column label.\n", "Defaulting to column, but this will raise an ambiguity error in a future version\n", " \"\"\"Entry point for launching an IPython kernel.\n" ] } ], "source": [ "tmpCountS=topTcgaVcfDf_inTargeted.groupby(['CHROM','POS'])['Count'].sum()" ] }, { "cell_type": "code", "execution_count": 70, "metadata": {}, "outputs": [], "source": [ "praucDf['tcga_wxs_count']=tmpCountS.loc[praucDf.set_index(['Chr','Pos']).index].values" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "\n" ] }, { "cell_type": "code", "execution_count": 71, "metadata": {}, "outputs": [], "source": [ "praucDf.to_pickle('./top_lgg_somatic_sites.pickle')" ] }, { "cell_type": "code", "execution_count": 44, "metadata": {}, "outputs": [ { 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auprcrnaseq_nrnaseq_rdvcfIndex
00.998211519133.822519(2, 208248388)
10.543616520122.076336(17, 7673803)
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40.951786519133.375954(2, 208248389)
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" ], "text/plain": [ " auprc rnaseq_n rnaseq_rd vcfIndex\n", "0 0.998211 519 133.822519 (2, 208248388)\n", "1 0.543616 520 122.076336 (17, 7673803)\n", "2 0.865149 519 133.375954 (2, 208248389)\n", "3 0.991546 448 38.312977 (14, 32092134)\n", "4 0.951786 519 133.375954 (2, 208248389)" ] }, "execution_count": 186, "metadata": {}, "output_type": "execute_result" } ], "source": [ "praucDf.head()" ] }, { "cell_type": "code", "execution_count": 187, "metadata": {}, "outputs": [], "source": [ "import matplotlib.pyplot as plt" ] }, { "cell_type": "code", "execution_count": 188, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "Text(0.5,0,'AUPRC')" ] }, "execution_count": 188, "metadata": {}, "output_type": "execute_result" }, { "data": { "image/png": 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" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "fig,ax=plt.subplots(figsize=(4,3))\n", "praucDf['auprc'].hist(ax=ax)\n", "#ax.set_yticklabels([])\n", "ax.grid(False)\n", "ax.set_yticklabels([])\n", "ax.set_ylabel('# of samples')\n", "ax.set_xlabel('AUPRC')" ] }, { "cell_type": "code", "execution_count": 189, "metadata": {}, "outputs": [ { "ename": "TypeError", "evalue": "'>' not supported between instances of 'dict' and 'float'", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)", "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[1;32m 1\u001b[0m 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y)\u001b[0m\n\u001b[1;32m 1117\u001b[0m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mlibops\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvec_compare\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mx\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0my\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mop\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1118\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1119\u001b[0;31m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mlibops\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mscalar_compare\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mx\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0my\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mop\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1120\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1121\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;32mpandas/_libs/ops.pyx\u001b[0m in \u001b[0;36mpandas._libs.ops.scalar_compare\u001b[0;34m()\u001b[0m\n", "\u001b[0;31mTypeError\u001b[0m: '>' not supported between instances of 'dict' and 'float'" ] } ], "source": [ "praucS=pd.Series(roc_auc_l).dropna()\n", "(praucS>0.8).mean()" ] }, { "cell_type": "code", "execution_count": 182, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/matplotlib/axes/_axes.py:6462: UserWarning: The 'normed' kwarg is deprecated, and has been replaced by the 'density' kwarg.\n", " warnings.warn(\"The 'normed' kwarg is deprecated, and has been \"\n" ] }, { "ename": "TypeError", "evalue": "'<' not supported between instances of 'dict' and 'float'", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)", 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rna-seqwxs
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" ], "text/plain": [ "Empty DataFrame\n", "Columns: [(rna-seq, ReadDepth), (rna-seq, AverageBaseQuality), (wxs, ReadDepth), (wxs, AverageBaseQuality)]\n", "Index: []" ] }, "execution_count": 99, "metadata": {}, "output_type": "execute_result" } ], "source": [ "wxsWithDataDf_base.head()" ] }, { "cell_type": "code", "execution_count": 20, "metadata": { "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:13: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", " del sys.path[0]\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:35: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n", "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:62: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy\n" ] } ], "source": [ "threshold=2\n", "\n", "selectedBase='T'\n", "query_chromosome, qeury_corrdinate='2',208248388\n", "m_chr=targetted_df.index.get_level_values('Chr')==query_chromosome\n", "Pos_array=targetted_df.index.get_level_values('Pos')\n", "window_size=0\n", "\n", "m_pos=(Pos_array>=(qeury_corrdinate-window_size))&(Pos_array<=(qeury_corrdinate+window_size))\n", "m_qual=targetted_df['AverageBaseQuality']>=30\n", "\n", "targetted_df_sub=targetted_df[m_pos&m_qual]\n", "\n", "index_metaDf=targetted_df_sub.index.to_frame()\n", "\n", "index_metaDf['sample_barcode']=manifest_df_w_RNA_WXS.set_index('file_id').loc[index_metaDf['Run_digits']]['sample_barcode'].values\n", "\n", "multI=index_metaDf.set_index(['sample_barcode','Run_digits','Chr','Pos','base']).index\n", "targetted_df_sub.index=multI\n", "\n", "\n", "rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='RNA-Seq']['file_id'].unique()\n", "m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(rnaseq_uuids)\n", "rnaseq_df=targetted_df_sub[m_uuid]\n", "\n", "groupings_L=['sample_barcode','Chr','Pos','base']\n", "\n", "rnaseq_df=rnaseq_df.groupby(groupings_L).first()\n", "\n", "wxs_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='WXS']['file_id'].unique()\n", "m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(wxs_uuids)\n", "wxs_df=targetted_df_sub[m_uuid]\n", "\n", "wxs_df=wxs_df.groupby(groupings_L).first()\n", "\n", "mergedDf=pd.concat([ rnaseq_df,wxs_df],axis=1,keys=['rna-seq','wxs'])\n", "\n", "mergedDf['wxs']['ReadDepth']=mergedDf['wxs']['ReadDepth'].fillna(0)\n", "\n", "#mergedDf\n", "\n", "#for the whole \n", "\n", "from sklearn import metrics\n", "\n", "#### get the homozygous\n", "\n", "wxsWithDataDf=mergedDf#[mergedDf['wxs']['ReadDepth']>=threshold]\n", "\n", "sampleRdS=wxsWithDataDf['wxs'].groupby('sample_barcode')['ReadDepth'].sum()\n", "\n", "xwsSamplesWithCoverage=sampleRdS.index[sampleRdS>threshold]\n", "\n", "m_base=wxsWithDataDf.index.get_level_values('base')==selectedBase\n", "\n", "m_wxs_coverage=wxsWithDataDf.index.get_level_values('sample_barcode').isin(xwsSamplesWithCoverage)\n", "\n", "m_valid_all=mergedDf.notnull().all(axis=1)\n", "\n", "wxsWithDataDf_base=wxsWithDataDf[m_base&m_wxs_coverage]\n", "\n", "wxsWithDataDf_base['rna-seq']=wxsWithDataDf_base['rna-seq'].fillna(0)\n", "\n", "#wxsWithDataDf_base['rna-seq']['ReadDepth'].hist()\n", "\n", "#wxsWithDataDf_base['wxs']['ReadDepth'].hist()\n", "\n", "y_true=wxsWithDataDf_base['wxs']['ReadDepth']>=threshold\n", "\n", "\n", "\n", "precision,recall,_=metrics.precision_recall_curve(y_true,\n", " wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0))\n", "auprc=metrics.auc(recall,precision)\n", "\n", "#group=wxsWithDataDf.groupby('base')\n", "\n", "#for base, df in group:\n", "# break" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "\n" ] }, { "cell_type": "code", "execution_count": 296, "metadata": { "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:3: FutureWarning: \n", "Passing list-likes to .loc or [] with any missing label will raise\n", "KeyError in the future, you can use .reindex() as an alternative.\n", "\n", "See the documentation here:\n", "https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike\n", " This is separate from the ipykernel package so we can avoid doing imports until\n" ] } ], "source": [ "index_metaDf=targetted_df_sub.index.to_frame()\n", "\n", "index_metaDf['sample_barcode']=manifest_df_w_RNA_WXS.set_index('file_id').loc[index_metaDf['Run_digits']]['sample_barcode'].values\n", "\n", "multI=index_metaDf.set_index(['sample_barcode','Run_digits','Chr','Pos','base']).index\n", "targetted_df_sub.index=multI\n", "\n", "wxs_df=targetted_df_sub[m_uuid]#.loc[wxs_uuid]" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 29, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "CPU times: user 72 ms, sys: 32 ms, total: 104 ms\n", "Wall time: 102 ms\n" ] } ], "source": [ "%time wxs_df=wxs_df.groupby(groupings_L).first()" ] }, { "cell_type": "code", "execution_count": 30, "metadata": {}, "outputs": [], "source": [ "rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='RNA-Seq']['file_id'].unique()\n", "\n", "m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(rnaseq_uuids)\n", "\n", "rnaseq_df=targetted_df_sub[m_uuid]#.loc[rnaseq_uuid]" ] }, { "cell_type": "code", "execution_count": 31, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "CPU times: user 24 ms, sys: 0 ns, total: 24 ms\n", "Wall time: 28.5 ms\n" ] } ], "source": [ "%time rnaseq_df=rnaseq_df.groupby(groupings_L).first()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 32, "metadata": {}, "outputs": [], "source": [ "mergedDf=pd.concat([ rnaseq_df,wxs_df],axis=1,keys=['rna-seq','wxs'])" ] }, { "cell_type": "code", "execution_count": 33, "metadata": {}, "outputs": [], "source": [ "mergedDf=mergedDf[~mergedDf.isnull().all(axis=1)]" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## identify IDH1 mutations" ] }, { "cell_type": "code", "execution_count": 34, "metadata": {}, "outputs": [], "source": [ "#ref C\n", "IDH1_corrdinate=208248388\n", "mergedDf_subDf=mergedDf[mergedDf.index.get_level_values('Pos')==IDH1_corrdinate]" ] }, { "cell_type": "code", "execution_count": 35, "metadata": {}, "outputs": [], "source": [ "m_quality=(mergedDf_subDf['wxs']['AverageBaseQuality']>20)\n", "ref_alt='T'\n", "m_alt=(mergedDf_subDf.index.get_level_values('base'))==ref_alt\n", "\n", "qualFilteredDf=mergedDf_subDf[m_quality]" ] }, { "cell_type": "code", "execution_count": 36, "metadata": {}, "outputs": [], "source": [ "unstackDf=qualFilteredDf.unstack()" ] }, { "cell_type": "code", "execution_count": 37, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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baseACGTACGTACGTACGT
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" ], "text/plain": [ " rna-seq \\\n", "features ReadDepth AverageBaseQuality \n", "base A C G T A \n", "sample_barcode Chr Pos \n", "TCGA-CS-4938-01B 2 208248388 NaN 68.0 NaN 24.0 NaN \n", "TCGA-CS-4941-01A 2 208248388 NaN 235.0 NaN NaN NaN \n", "TCGA-CS-4942-01A 2 208248388 NaN 140.0 NaN 19.0 NaN \n", "TCGA-CS-4944-01A 2 208248388 NaN 43.0 NaN 17.0 NaN \n", "TCGA-CS-5390-01A 2 208248388 NaN 95.0 NaN 32.0 NaN \n", "\n", " wxs \\\n", "features ReadDepth \n", "base C G T A C G T \n", "sample_barcode Chr Pos \n", "TCGA-CS-4938-01B 2 208248388 37.0 NaN 38.0 NaN 87.0 NaN 29.0 \n", "TCGA-CS-4941-01A 2 208248388 37.0 NaN NaN NaN 182.0 NaN NaN \n", "TCGA-CS-4942-01A 2 208248388 38.0 NaN 38.0 NaN 192.0 NaN 46.0 \n", "TCGA-CS-4944-01A 2 208248388 37.0 NaN 37.0 NaN 149.0 NaN 43.0 \n", "TCGA-CS-5390-01A 2 208248388 37.0 NaN 38.0 NaN 141.0 NaN 51.0 \n", "\n", " \n", "features AverageBaseQuality \n", "base A C G T \n", "sample_barcode Chr Pos \n", "TCGA-CS-4938-01B 2 208248388 NaN 29.0 NaN 29.0 \n", "TCGA-CS-4941-01A 2 208248388 NaN 27.0 NaN NaN \n", "TCGA-CS-4942-01A 2 208248388 NaN 25.0 NaN 28.0 \n", "TCGA-CS-4944-01A 2 208248388 NaN 27.0 NaN 28.0 \n", "TCGA-CS-5390-01A 2 208248388 NaN 26.0 NaN 27.0 " ] }, "execution_count": 37, "metadata": {}, "output_type": "execute_result" } ], "source": [ "unstackDf.head()" ] }, { "cell_type": "code", "execution_count": 38, "metadata": {}, "outputs": [], "source": [ "from sklearn import metrics" ] }, { "cell_type": "code", "execution_count": 39, "metadata": {}, "outputs": [], "source": [ "import matplotlib.pyplot as plt" ] }, { "cell_type": "code", "execution_count": 45, "metadata": {}, "outputs": [ { "data": { "image/png": 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\n", 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" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "\n", "fig,ax=plt.subplots(figsize=(5,3))\n", "\n", "unstackDf[('wxs','ReadDepth','T')].fillna(0).hist(bins=30,label='Minor alle',ax=ax)\n", "unstackDf[('wxs','ReadDepth','C')].fillna(0).hist(bins=30,ax=ax,\n", " label='Reference allele')\n", "ax.axvline(x=10,c='red')\n", "ax.set_ylabel('# of tumor samples')\n", "ax.legend()\n", "ax.set_xlabel('Allelic read counts')\n", "ax.grid(False)\n" ] }, { "cell_type": "code", "execution_count": 48, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "351" ] }, "execution_count": 48, "metadata": {}, "output_type": "execute_result" } ], "source": [ "(unstackDf[('wxs','ReadDepth','T')]>0).sum()" ] }, { "cell_type": "code", "execution_count": 41, "metadata": {}, "outputs": [ { "ename": "NameError", "evalue": "name 'asdasdas' is not defined", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)", "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0masdasdas\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", "\u001b[0;31mNameError\u001b[0m: name 'asdasdas' is not defined" ] } ], "source": [ "asdasdas" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "y_true=(>10)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "y_true.value_counts()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "print ('ROC AUC',metrics.roc_auc_score(y_true,\n", " unstackDf[('rna-seq','ReadDepth','T')].fillna(0)))\n", "precision, recall, thresholds=metrics.precision_recall_curve(y_true,\n", " unstackDf[('rna-seq','ReadDepth','T')].fillna(0))\n", "ax=pd.DataFrame({'precision':precision,'recall':recall}).plot(x='recall',y='precision')\n", "ax.set_ylabel('Precision')\n", "ax.set_xlabel('Recall')\n", "metrics.auc(recall,precision)\n", "ax.set_title('IDH1 C>T mutation using RNAseq')" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "import seaborn as sns" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "qualFilteredDf[('wxs','ReadDepth')].index.get_level_values('base').value_counts()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "qualFilteredDf[('rna-seq','ReadDepth')].index.get_level_values('base').value_counts()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "qualFilteredDf[('rna-seq','ReadDepth')].index.get_level_values('base').value_counts()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "mergedDf_subDf" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "\n", "qualFilteredDf['ReadDepth'],qualFilteredDf['wxs']>3" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "##c \n" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "#qualFilteredDf[]" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "unstackDf=qualFilteredDf['wxs'].unstack()['ReadDepth']" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "#qualFilteredDf['wxs'].unstack()['ReadDepth']" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "sns.jointplot(data=qualFilteredDf[qualFilteredDf.index.get_level_values('base')=='T'],x=('rna-seq','ReadDepth'),y=('wxs','ReadDepth'))\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "#categorical_crossentropy" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "### generate the correlation between the data " ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.5" } }, "nbformat": 4, "nbformat_minor": 2 }