ANT IS DEPRECATED FOR BUILDING Picard Please switch to using gradlew Examples: compile picard or it's tests ./gradlew compileJava ./gradlew compileTest build a jar ./gradlew jar build a jar, along with source and document jars ./gradlew build build a jar that packages all of htsjdk's dependencies in a single jar ./gradlew shadowJar run tests, or a single test, or run a test and wait for the debugger ./gradlew test ./gradlew test --tests "*ParserTest" ./gradlew test --tests "*ParserTest" --debug-jvm run tests and collect coverage information (report will be in `build/reports/jacoco/test/html/index.html`) ./gradlew jacocoTestReport clean the project directory ./gradlew clean see an exhaustive list of all available targets ./gradlew tasks