{
  "name": "cbioportal-frontend",
  "private": true,
  "version": "3.3.309",
  "description": "",
  "pre-commit": [
    "prettierFixCurrentChanges"
  ],
  "scripts": {
    "prestart": "./scripts/check_build_prereqs.sh",
    "start": "pnpm watch",
    "prestartSSL": "./scripts/check_build_prereqs.sh",
    "startSSL": "pnpm watchSSL",
    "prestartAll": "./scripts/check_build_prereqs.sh",
    "startAll": "concurrently -n packages,app -k \"lerna run watch --parallel\" \"pnpm watch\"",
    "prestartAllSSL": "./scripts/check_build_prereqs.sh",
    "startAllSSL": "concurrently -n packages,app -k \"lerna run watchSSL --parallel\" \"pnpm watchSSL\"",
    "mergeTests": "./scripts/api-test_env.sh && node api-e2e/merge-tests.js",
    "apitests": "cd ./api-e2e && npx tsc && pnpm run mergeTests && node ./run.js",
    "watch": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && cross-env NODE_ENV=development rspack serve -c rspack.config.js",
    "watchSSL": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && cross-env NODE_ENV=development NODE_OPTIONS=--max-old-space-size=4096 rspack serve -c rspack.config.js",
    "clean": "rimraf dist tsDist",
    "updatePackageVersion": "./scripts/update_package_version.sh",
    "build": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && pnpm run buildAll",
    "buildAll": "pnpm run buildModules && pnpm run buildMain",
    "buildMain": "pnpm run clean && pnpm run compileOqlParser && cross-env NODE_ENV=production NODE_OPTIONS=--openssl-legacy-provider --max-old-space-size=4096 rspack build -c rspack.config.js",
    "buildModules": "turbo run build --filter=./packages/*",
    "publishModules": "lerna publish from-git --yes --concurrency 1",
    "publishModulesFromPackages": "lerna publish from-package --yes --concurrency 1",
    "build:size": "pnpm run clean && cross-env NODE_ENV=production rspack build -c rspack.config.js --json > stats.json",
    "buildBootstrap": "sass --style :compressed src/globalStyles/bootstrap-entry.scss src/globalStyles/prefixed-bootstrap.min.css",
    "heroku-postbuild": "pnpm run build && pnpm add pushstate-server@3.0.1 -g",
    "updateAPI": "pnpm run fetchAPI && pnpm run buildAPI && pnpm run updateOncoKbAPI && pnpm run updateGenomeNexusAPI",
    "convertToSwagger2": "./scripts/convert_to_swagger2.sh && pnpm run extendSwagger2Converter",
    "fetchAPILocal": "export CBIOPORTAL_URL=http://localhost:8082 && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/public > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/internal | json > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json && pnpm run convertToSwagger2",
    "fetchAPI": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/public  > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json && curl -s -L -k ${CBIOPORTAL_URL}/api/v3/api-docs/internal | json  > packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json && pnpm run convertToSwagger2",
    "extendSwagger2Converter": "node scripts/extend_converter.js packages/cbioportal-ts-api-client/src/generated CBioPortalAPI CBioPortalAPIInternal",
    "buildAPI": "node scripts/generate-api.js packages/cbioportal-ts-api-client/src/generated CBioPortalAPI CBioPortalAPIInternal",
    "updateOncoKbAPI": "pnpm run fetchOncoKbAPI && pnpm run buildOncoKbAPI",
    "fetchOncoKbAPI": "curl -s -k https://www.oncokb.org/api/v1/v2/api-docs?group=Public%20APIs | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/oncokb-ts-api-client/src/generated/OncoKbAPI-docs.json",
    "buildOncoKbAPI": "node scripts/generate-api.js packages/oncokb-ts-api-client/src/generated OncoKbAPI",
    "updateG2SAPI": "pnpm run fetchG2SAPI && pnpm run buildG2SAPI",
    "fetchG2SAPI": "curl -s -k http://g2s.genomenexus.org/v2/api-docs?group=api > packages/genome-nexus-ts-api-client/src/generated/Genome2StructureAPI-docs.json",
    "buildG2SAPI": "node scripts/generate-api.js packages/genome-nexus-ts-api-client/src/generated Genome2StructureAPI",
    "updateGenomeNexusAPI": "pnpm run fetchGenomeNexusAPI && pnpm run buildGenomeNexusAPI",
    "fetchGenomeNexusAPI": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && curl -s -L -k ${GENOME_NEXUS_URL}/v2/api-docs | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json && curl -s -L -k ${GENOME_NEXUS_URL}/v2/api-docs?group=internal | json | grep -v basePath | grep -v termsOfService | grep -v host > packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json",
    "buildGenomeNexusAPI": "node scripts/generate-api.js packages/genome-nexus-ts-api-client/src/generated GenomeNexusAPI GenomeNexusAPIInternal",
    "updateHotspotGenes": "./scripts/get_hotspot_genes.sh > src/shared/static-data/hotspotGenes.json",
    "compileOqlParser": "cd src/shared/lib/oql && pegjs oql-parser.pegjs",
    "serveDist": "./scripts/serve_dist.sh",
    "serveDistLocalDb": "./end-to-end-test/local/runtime-config/serve_dist.sh",
    "testTime": "start_time=`date +%s` && karma start karma.conf.js && echo run time is $(expr `date +%s` - $start_time) s",
    "test": "pnpm run testMain",
    "typecheck": "tsc --noEmit -p tsconfig.json",
    "check-env": "echo ",
    "testMain": "jest $GREP --env=jsdom --runInBand --ci --reporters=default --reporters=jest-junit",
    "testPackagesCI": "JEST_JUNIT_UNIQUE_OUTPUT_NAME=true JEST_JUNIT_OUTPUT_DIR=/tmp/junit/module/ JEST_JUNIT_OUTPUT_NAME=unit-test-module pnpm run testPackages",
    "testPackages": "lerna run test --ignore=cbioportal-frontend --stream",
    "test:watch": "pnpm run testMain:watch",
    "testMain:watch": "pnpm run testMain --watch",
    "test:debug": "pnpm run test --debug --browsers=Chrome_with_debugging --single-run=false",
    "waitForNetlifyPreview": "node scripts/wait_for_netlify_preview.js",
    "findNetlifyDeployId": "node scripts/find_netlify_deploy_id.js",
    "prettierFixCurrentChanges": "STAGED_AND_CHANGED_FILES=$(git diff HEAD --name-only --cached --diff-filter=d) && ([ -z \"$STAGED_AND_CHANGED_FILES\" ] && echo \"Nothing to prettify\" || (pnpm exec prettier --write $(echo $STAGED_AND_CHANGED_FILES) && git add -f $(echo $STAGED_AND_CHANGED_FILES)))",
    "prettierCheckCircleCI": "./scripts/env_vars.sh && eval \"$(./scripts/env_vars.sh)\" && git remote add cbio-repo https://github.com/cBioPortal/cbioportal-frontend.git 2>/dev/null || true && git fetch cbio-repo $(echo $BRANCH_ENV) && CHANGED_FILES=$(git diff cbio-repo/$(echo $BRANCH_ENV)...HEAD --name-only --diff-filter=d) && [ ! -z \"$CHANGED_FILES\" ] && pnpm exec prettier -c $(echo $CHANGED_FILES) && git remote remove cbio-repo 2>/dev/null || true",
    "prettierFixLocal": "CHANGED_FILES=$(git diff $(echo $BRANCH_ENV) --name-only --diff-filter=d) && ([ ! -z \"$CHANGED_FILES\" ] && pnpm exec prettier --write $(echo $CHANGED_FILES) || echo \"Nothing to prettify\")",
    "prettierAll": "pnpm exec prettier --write $(git ls-files | grep '\\(.js\\|.ts\\|.scss\\|.css\\)')",
    "checkIncorrectImportStatements": "./scripts/check_incorrect_import_statements.sh",
    "e2e:spinup": "./scripts/e2e.sh",
    "e2e:local": "export RETRIES=0 && export CBIOPORTAL_URL=http://localhost:8080 && export && export SCREENSHOT_DIRECTORY=/local/screenshots/ && cd end-to-end-test && pnpm run test-webdriver-manager-local",
    "e2e:remote": "export RETRIES=0 && export CBIOPORTAL_URL=https://www.cbioportal.org && export SCREENSHOT_DIRECTORY=/remote/screenshots/ && rm -r -f end-to-end-test/shared/results && cd end-to-end-test && pnpm run test-webdriver-manager-remote",
    "e2e:report": "npx http-server end-to-end-test -o /shared/imageCompare.html -p 8089",
    "localChromeDriver": "chromedriver"
  },
  "engines": {
    "node": "22.18.0"
  },
  "author": "",
  "license": "AGPL-3.0-or-later",
  "dependencies": {
    "3dmol": "^2.5.4",
    "@babel/core": "7.29.6",
    "@babel/plugin-syntax-dynamic-import": "^7.8.3",
    "@babel/preset-env": "^7.4.4",
    "@babel/preset-react": "^7.0.0",
    "@datadog/browser-logs": "^5.28.0",
    "@datadog/browser-rum": "^6.26.0",
    "@deck.gl/core": "^9.1.12",
    "@deck.gl/layers": "^9.1.12",
    "@deck.gl/react": "^9.1.12",
    "@deck.gl/widgets": "^9.1.12",
    "@fortawesome/fontawesome-free": "^6.7.2",
    "@rollup/plugin-commonjs": "^22.0.0",
    "@rollup/plugin-image": "^2.1.1",
    "@rollup/plugin-json": "^4.1.0",
    "@rollup/plugin-node-resolve": "^13.3.0",
    "@testing-library/react": "12.1",
    "@types/chai": "3.5.2",
    "@types/chai-enzyme": "^0.6.2",
    "@types/classnames": "0.0.32",
    "@types/color-convert": "^2.0.0",
    "@types/d3-scale": "^2.0.0",
    "@types/d3-scale-chromatic": "^1.3.0",
    "@types/enzyme": "^3.10.8",
    "@types/expired-storage": "^1.0.0",
    "@types/google.analytics": "0.0.39",
    "@types/history": "^4.7.8",
    "@types/jest": "^27.0.2",
    "@types/jquery": "^3.3.31",
    "@types/js-combinatorics": "0.5.29",
    "@types/jstree": "^3.3.35",
    "@types/lodash": "4.14.104",
    "@types/lolex": "1.5.31",
    "@types/numeral": "0.0.22",
    "@types/pako": "1.0.1",
    "@types/qs": "^6.9.5",
    "@types/raphael": "2.1.30",
    "@types/rc-tooltip": "^3.7.3",
    "@types/react": "^18.3.27",
    "@types/react-bootstrap": "^0.32.15",
    "@types/react-collapse": "^4.0.2",
    "@types/react-color": "^3.0.4",
    "@types/react-dom": "^18.3.7",
    "@types/react-fontawesome": "1.5.0",
    "@types/react-grid-layout": "^0.16.5",
    "@types/react-helmet": "^6.1.0",
    "@types/react-overlays": "^0.6.9",
    "@types/react-router-dom": "^5.1.6",
    "@types/react-select": "^5.0.1",
    "@types/react-sortable-hoc": "^0.6.5",
    "@types/react-spinkit": "^1.1.35",
    "@types/react-table": "^6.8.7",
    "@types/react-toastify": "^4.1.0",
    "@types/react-virtualized": "^9.18.7",
    "@types/recompose": "^0.20.4",
    "@types/reselect": "^2.0.27",
    "@types/seamless-immutable": "^6.1.2",
    "@types/sinon": "^4.1.3",
    "@types/superagent": "^2.0.36",
    "autobind-decorator": "^2.1.0",
    "axios": "^1.7.8",
    "babel-loader": "8.0.5",
    "babel-polyfill": "^6.22.0",
    "better-react-spinkit": "^2.0.0-6",
    "bind-decorator": "^1.0.11",
    "bootstrap": "3.4.1",
    "bootstrap-sass": "3.4.1",
    "bowser": "^1.7.1",
    "cbioportal-clinical-timeline": "workspace:*",
    "cbioportal-frontend-commons": "workspace:*",
    "cbioportal-ts-api-client": "workspace:*",
    "cbioportal-utils": "workspace:*",
    "classnames": "^2.2.5",
    "clipboard": "1.7.1",
    "color-convert": "^2.0.1",
    "contrast": "^1.0.1",
    "copy-webpack-plugin": "^9.0.1",
    "cross-env": "^3.1.4",
    "css-loader": "^6.0.0",
    "csvtojson": "^2.0.10",
    "cytoscape-navigator": "1.3.3",
    "cytoscape-panzoom": "2.5.3",
    "d3": "3.5.6",
    "d3-dsv": "1.0.8",
    "d3-scale": "^2.0.0",
    "d3-scale-chromatic": "^1.3.3",
    "datatables.net": "^1.10.13",
    "dotenv": "^4.0.0",
    "enzyme": "^3.11.0",
    "@cfaester/enzyme-adapter-react-18": "^0.8.0",
    "enzyme-custom-wrappers": "^1.0.0",
    "expired-storage": "^1.0.2",
    "express": "^4.16.4",
    "fast_array_intersect": "^1.1.0",
    "file-loader": "^6.2.0",
    "fmin": "^0.0.2",
    "fork-ts-checker-webpack-plugin": "^6.3.3",
    "genome-nexus-ts-api-client": "workspace:*",
    "git-revision-webpack-plugin": "^5.0.0",
    "gl-matrix": "2.3.2",
    "history": "4.10.1",
    "html-webpack-plugin": "^5.3.2",
    "igv": "^2.11.2",
    "imports-loader": "^0.8.0",
    "jStat": "^1.7.0",
    "javascript-natural-sort": "^0.7.1",
    "jquery": "3.6.0",
    "jquery-migrate": "3.0.0",
    "js-combinatorics": "^0.5.2",
    "js-event-bus": "^1.1.1",
    "jsonpath": "^1.1.1",
    "jspdf-yworks": "2.0.1",
    "jstree": "^3.3.4",
    "jszip": "^3.7.1",
    "juice": "10.0.0",
    "lerna": "9.0.7",
    "linear-algebra": "^3.1.4",
    "little-loader": "^0.2.0",
    "loader-utils": "^1.0.2",
    "localforage": "^1.9.0",
    "lodash": "^4.17.21",
    "lolex": "^1.6.0",
    "measure-text": "0.0.4",
    "memoize-weak-decorator": "^1.0.3",
    "mini-css-extract-plugin": "^2.0.0",
    "mobx": "^6.0.0",
    "mobx-react": "7.6.0",
    "mobx-react-lite": "3.0.1",
    "mobx-react-router": "4.1.0",
    "mobx-utils": "6.0.1",
    "numeral": "^2.0.6",
    "object-sizeof": "^1.2.0",
    "oncokb-frontend-commons": "workspace:*",
    "oncokb-styles": "~1.4.2",
    "oncokb-ts-api-client": "workspace:*",
    "oncoprintjs": "workspace:*",
    "pako": "2.0.2",
    "parameter-validator": "^1.0.2",
    "path-browserify": "^1.0.1",
    "pathway-mapper": "^2.3.0",
    "pegjs": "^0.10.0",
    "pluralize": "^7.0.0",
    "postcss-url": "^8.0.0",
    "progress-bar-webpack-plugin": "^2.1.0",
    "pushstate-server": "3.0.1",
    "qs": "6.15.2",
    "query-string": "^6.13.6",
    "range-ts": "^0.1.5",
    "raw-loader": "^0.5.1",
    "rc-tooltip": "^5.0.2",
    "react": "^18.3.1",
    "react-bootstrap": "^0.31.5",
    "react-clipboard.js": "^1.0.1",
    "react-collapse": "^4.0.3",
    "react-color": "^2.18.1",
    "react-column-resizer": "^1.1.9",
    "react-dom": "^18.3.1",
    "react-draggable": "^3.3.0",
    "react-file-download": "^0.3.2",
    "react-fontawesome": "^1.5.0",
    "react-grid-layout": "^0.16.6",
    "react-helmet": "^6.1.0",
    "react-if": "^2.1.0",
    "react-json-to-table": "^0.1.5",
    "react-markdown": "^7.0.1",
    "react-mfb": "^0.6.0",
    "react-motion": "^0.4.7",
    "react-mutation-mapper": "workspace:*",
    "react-overlays": "0.7.4",
    "react-portal": "^4.2.0",
    "react-rangeslider": "^2.1.0",
    "react-resizable": "1.7.5",
    "react-reveal": "^1.2.2",
    "react-router": "5.2.0",
    "react-router-dom": "^5.2.0",
    "react-select": "^3.0.4",
    "react-select1": "npm:react-select@1.3.0",
    "react-sortable-hoc": "^1.9.1",
    "react-spinkit": "^3.0.0",
    "react-table": "6.10.0",
    "react-text-truncate": "^0.9.0",
    "react-toastify": "^9.1.2",
    "react-virtualized": "^9.20.1",
    "reactable": "^0.14.1",
    "reactour": "^1.15.0",
    "recompose": "^0.22.0",
    "regression": "^2.0.1",
    "rehype-raw": "^6.1.0",
    "rehype-sanitize": "^5.0.0",
    "remark-gfm": "^3.0.1",
    "reselect": "^2.5.4",
    "rimraf": "6.1.3",
    "rollup": "^2.73.0",
    "rollup-plugin-node-externals": "^4.0.0",
    "rollup-plugin-postcss": "^2.9.0",
    "rollup-plugin-sourcemaps": "^0.6.3",
    "rollup-plugin-typescript2": "^0.31.2",
    "rollup-plugin-web-worker-loader": "^1.6.1",
    "sass": "1.32.4",
    "sass-loader": "10.1.1",
    "sass-resources-loader": "^1.3.1",
    "save-svg-as-png": "^1.4.17",
    "seamless-immutable": "^7.0.1",
    "source-map-loader": "^0.1.6",
    "style-loader": "^4.0.0",
    "styled-components": "^4.2.1",
    "superagent": "^3.8.3",
    "superagent-cache": "^3.0.1",
    "svg2pdf.js": "github:cbioportal/svg2pdf.js#v1.3.3-cbio-patch-1",
    "swagger-client": "3.8.25",
    "ts-loader": "9.5.1",
    "tslib": "^2.6.0",
    "typed-css-modules": "0.6.4",
    "typed-css-modules-webpack-plugin": "^0.2.0",
    "typescript": "4.9.5",
    "underscore": "^1.8.3",
    "url": "^0.11.0",
    "url-loader": "^4.1.1",
    "venn.js": "^0.2.20",
    "victory": "30.0.0",
    "webpack": "^5.101.3",
    "webpack-cli": "^6.0.1",
    "webpack-raphael": "github:DmitryBaranovskiy/raphael#v2.3.0",
    "xml2js": "^0.5.0"
  },
  "devDependencies": {
    "@rspack/cli": "1.7.11",
    "@rspack/core": "1.7.11",
    "@types/cheerio": "^0.22.23",
    "@types/react-test-renderer": "^18.3.1",
    "@types/yargs": "17.0.35",
    "babel-plugin-rewire": "^1.0.0",
    "chai": "^4.3.4",
    "chai-enzyme": "^1.0.0-beta.1",
    "cheerio": "^1.0.0-rc.5",
    "concurrently": "^5.2.0",
    "deep-equal-in-any-order": "^1.0.10",
    "expect": "^1.20.2",
    "expect-jsx": "5.0.0",
    "http-server": "0.11.1",
    "identity-obj-proxy": "^3.0.0",
    "jest": "^27.2.1",
    "jest-canvas-mock": "^2.3.1",
    "jest-environment-jsdom": "^27.2.0",
    "jest-junit": "^13.2.0",
    "json": "^9.0.6",
    "netlify": "^8.0.1",
    "node-fetch": "^2.6.1",
    "pre-commit": "^1.2.2",
    "prettier": "1.19.1",
    "puppeteer": "24.40.0",
    "react-test-renderer": "^18.3.1",
    "request": "^2.88.0",
    "sinon": "^4.1.3",
    "swagger-js-codegen": "git+https://github.com/cBioPortal/swagger-js-codegen.git#0362f4a1e2d116ad6dffc36e4b57cdfbc93956cf",
    "ts-jest": "^27.1.5",
    "ts-node": "^10.9.2",
    "turbo": "2.9.14",
    "webpack-dev-server": "^5.2.2",
    "yargs": "^6.6.0"
  },
  "packageManager": "pnpm@10.33.0+sha512.10568bb4a6afb58c9eb3630da90cc9516417abebd3fabbe6739f0ae795728da1491e9db5a544c76ad8eb7570f5c4bb3d6c637b2cb41bfdcdb47fa823c8649319",
  "pnpm": {
    "overrides": {
      "@babel/traverse": "7.28.5",
      "@babel/types": "7.29.0",
      "@types/express-serve-static-core": "4.19.8",
      "picomatch": "2.3.0",
      "@types/react-router-dom>@types/react-router": "5.1.8",
      "cheerio": "1.0.0-rc.5",
      "mobx": "6.0.4",
      "mobx-react": "7.6.0",
      "@types/react": "18.3.27",
      "@types/react-router-dom": "5.1.6",
      "@types/react-bootstrap": "0.32.17",
      "@types/jquery": "3.3.31",
      "@types/d3-scale": "2.1.1",
      "react-router-dom": "5.2.0",
      "prop-types": "15.7.2",
      "react-is": "18.3.1",
      "igv": "2.11.2"
    }
  }
}