format-version: 1.2
data-version: releases/2022-12-09
date: 29:11:2022 16:29
saved-by: zfinf
auto-generated-by: OBO-Edit 2.3-beta5
subsetdef: cell_slim "cell_slim"
synonymtypedef: PLURAL "PLURAL"
default-namespace: zebrafish_anatomical_ontology
treat-xrefs-as-genus-differentia: CARO part_of NCBITaxon:7955
treat-xrefs-as-genus-differentia: CL part_of NCBITaxon:7955
treat-xrefs-as-genus-differentia: TAO part_of NCBITaxon:7955
treat-xrefs-as-genus-differentia: VSAO part_of NCBITaxon:7955
ontology: zfa
property_value: http://purl.org/dc/elements/1.1/description "ZFA description." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "Zebrafish Anatomy Ontology (ZFA)" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
property_value: IAO:0000700 ZFA:0100000
property_value: IAO:0000700 ZFS:0100000
property_value: owl:versionInfo "2022-12-09" xsd:string

[Term]
id: ZFA:0000000
name: Brachet's cleft
namespace: zebrafish_anatomy
def: "The visible division between epiblast and hypoblast in the gastrula." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000000
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000001
name: Kupffer's vesicle
namespace: zebrafish_anatomy
def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050328-4, ZFIN:ZDB-PUB-961014-576]
synonym: "ciliated organ of asymmetry" EXACT [ZFIN:ZDB-PUB-050221-4]
xref: TAO:0000001
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000023 ! forerunner cell group
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000077 ! tail bud
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000003
name: adaxial cell
namespace: zebrafish_anatomy
def: "Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm." [PMID:8951054]
subset: cell_slim
synonym: "adaxial cells" EXACT PLURAL []
xref: CL:0007016
xref: TAO:0000003
is_a: ZFA:0009000 ! cell
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000279 ! segmental plate
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000004
name: anterior axial hypoblast
namespace: zebrafish_anatomy
def: "Anterior portion of the axial hypoblast." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5]
xref: TAO:0000004
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0001378 ! axial hypoblast
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000005
name: artery
namespace: zebrafish_anatomy
def: "Blood vessels that carry blood away from the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "arterial system" RELATED []
xref: TAO:0000005
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001079 ! blood vasculature
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000006
name: ball
namespace: zebrafish_anatomy
def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period." [ZFIN:ZDB-PUB-961014-576]
synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000006
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0000084 ! yolk
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000007
name: blood
namespace: zebrafish_anatomy
def: "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000007
is_a: ZFA:0001487 ! portion of organism substance
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005023 ! hematopoietic system
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000008
name: brain
namespace: zebrafish_anatomy
alt_id: ZFA:0001661
def: "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "brain structure" RELATED []
xref: TAO:0000008
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0001135 ! neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000009
name: cardiac ventricle
namespace: zebrafish_anatomy
def: "Cavitated compound organ that receives blood flow from the atrium and delivers blood to the body via the aorta. Valves are present to direct flow. There are only two chambers present in the fish heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020122-4]
synonym: "ventricle" EXACT []
xref: TAO:0000009
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0001719 ! presumptive cardiac ventricle heart tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000010
name: cardiovascular system
namespace: zebrafish_anatomy
def: "Anatomical system that functions in circulation and  has as its parts the heart and vasculature. The lymphatic system is considered part of the cardiovascular system." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000010
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000011
name: caudal artery
namespace: zebrafish_anatomy
def: "Extension of the dorsal aorta in the post-vent region." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "CA" EXACT []
xref: TAO:0000011
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005037 ! post-vent vasculature
relationship: part_of ZFA:0005295 ! axial blood vessel
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000012
name: central nervous system
namespace: zebrafish_anatomy
def: "The brain and spinal cord." [ZFIN:ZDB-PUB-961014-576]
synonym: "cns" EXACT []
xref: TAO:0000012
is_a: ZFA:0000396 ! nervous system
relationship: develops_from ZFA:0000063 ! presumptive neural plate
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000013
name: cranial ganglion
namespace: zebrafish_anatomy
def: "Ganglion which is located in the head." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cranial ganglia" EXACT PLURAL []
synonym: "presumptive cranial ganglia" RELATED []
xref: TAO:0000013
is_a: ZFA:0000190 ! ganglion
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000014
name: dorsal aorta
namespace: zebrafish_anatomy
def: "Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "DA" EXACT []
synonym: "dorsal aortic root" EXACT []
xref: TAO:0000014
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0005077 ! vascular cord
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: part_of ZFA:0005295 ! axial blood vessel
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000015
name: anatomical set
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001512

[Term]
id: ZFA:0000016
name: ectoderm
namespace: zebrafish_anatomy
def: "The outer layer of the embryo derived from the epiblast. The definitive ectoderm will give rise to such tissues as epidermis, the central nervous system, neural crest, and sensory placode." [http://zfin.org/zf_info/zfbook/stages/gast.html]
xref: TAO:0000016
is_a: ZFA:0001122 ! primary germ layer
relationship: develops_from ZFA:0000018 ! epiblast
relationship: end ZFS:0000038 ! larval:day 6
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000017
name: endoderm
namespace: zebrafish_anatomy
xref: TAO:0000017
is_a: ZFA:0001122 ! primary germ layer
relationship: develops_from ZFA:0000416 ! presumptive endoderm
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000018
name: epiblast
namespace: zebrafish_anatomy
def: "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000018
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000711 ! DEL
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0000111 ! germ ring
relationship: start ZFS:0000018 ! gastrula:germ-ring

[Term]
id: ZFA:0000019
name: epiphysis
namespace: zebrafish_anatomy
def: "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon.  It is located directly rostral to the posterior commissure and dorsal to the habenular commissure." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1268, ZFIN:ZDB-PUB-961014-576]
synonym: "corpus pineale" EXACT []
synonym: "pineal gland" EXACT []
synonym: "pineal organ" EXACT []
xref: TAO:0000019
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001127 ! visual system
relationship: part_of ZFA:0001158 ! endocrine system
relationship: part_of ZFA:0001359 ! pineal complex
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000020
name: extraembryonic structure
namespace: zebrafish_anatomy
def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "extraembryonic structures" EXACT PLURAL []
xref: CARO:0000042
xref: TAO:0000020
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000022
name: floor plate
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the ventral-most aspect of the developing neural tube.  The floor plate is a specialized glial structure with secretory function that spans the rostral-caudal axis from the midbrain to the tail regions.  The floor plate is one of first structures that differentiate in the developing nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-980205-16]
comment: The floor plate cells are a row of cells along the a-p axis ~3 cells wide that make up the ventral floor of the early spinal cord.  Floor plate cells are prominent rectangular cells with a triangular cross section with one cell in the middle that straddles the ventral midline and usually one cell lateral to the middle cell on both sides.   14hpf.
synonym: "floorplate" EXACT []
synonym: "fp" EXACT []
xref: TAO:0000022
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001218 ! presumptive floor plate
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000023
name: forerunner cell group
namespace: zebrafish_anatomy
def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle." [ZFIN:ZDB-PUB-970107-2]
synonym: "DFCs" EXACT PLURAL []
synonym: "dorsal forerunner cells" EXACT PLURAL []
synonym: "forerunner cells" EXACT PLURAL []
xref: TAO:0000023
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0001126 ! noninvoluting endocytic marginal cell cluster
relationship: end ZFS:0000023 ! segmentation:1-4 somites
relationship: start ZFS:0000017 ! gastrula:50%-epiboly

[Term]
id: ZFA:0000024
name: retinal ganglion cell layer
namespace: zebrafish_anatomy
def: "Layer of the retina that contains the ganglion cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ganglion cell layer" EXACT []
xref: TAO:0000024
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000026
name: hatching gland
namespace: zebrafish_anatomy
def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "hgg" EXACT []
xref: TAO:0000026
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000058 ! polster
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000027
name: paired fin skeleton
namespace: zebrafish_anatomy
def: "Skeletal system of paired fins." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "appendicular skeleton" EXACT []
xref: TAO:0000027
is_a: ZFA:0000434 ! skeletal system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005596 ! paired fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000028
name: heart primordium
namespace: zebrafish_anatomy
def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone." [ZFIN:ZDB-PUB-010219-2]
synonym: "cardiac field" EXACT []
synonym: "heart primordia" EXACT PLURAL []
xref: TAO:0000028
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001065 ! lateral mesoderm
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000029
name: hindbrain
namespace: zebrafish_anatomy
def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "rhombencephalon" EXACT []
xref: TAO:0000029
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0007043 ! hindbrain neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000030
name: macula utricle
namespace: zebrafish_anatomy
def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity.  The macula utricle covers most of the floor of the utricle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7]
synonym: "maculae utricle" EXACT PLURAL []
xref: TAO:0000030
is_a: ZFA:0000386 ! macula
relationship: develops_from ZFA:0000168 ! anterior macula
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000700 ! utricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000031
name: hypochord
namespace: zebrafish_anatomy
def: "Portion of tissue that arises from the arise from the lateral edges of the shield and is located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived." [ZFIN:ZDB-PUB-000621-3, ZFIN:ZDB-PUB-060807-3]
xref: TAO:0000031
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001217 ! presumptive hypochord
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0000017 ! endoderm
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000032
name: hypothalamus
namespace: zebrafish_anatomy
def: "Multi-tissue structure which is the largest portion of diencephalon and is ventrally located. The hypothalamus arises near the end of the segmentation period and the embryonic hypothalamic region gives rise to the neurohypophysis and other diencephalic nuclei." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000032
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000033
name: intermediate cell mass of mesoderm
namespace: zebrafish_anatomy
synonym: "ICM" EXACT []
synonym: "intermediate cell mass of Oellacher" EXACT []
synonym: "posterior intermediate cell mass" EXACT []
xref: TAO:0000033
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000121 ! lateral plate mesoderm
relationship: develops_from ZFA:0001201 ! ventral lateral mesoderm
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: part_of ZFA:0005023 ! hematopoietic system
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000034
name: lateral line system
namespace: zebrafish_anatomy
def: "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "ll" EXACT []
xref: TAO:0000034
is_a: ZFA:0000282 ! sensory system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000142 ! peripheral nervous system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000035
name: lens
namespace: zebrafish_anatomy
def: "Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused." [GOC:mh, http://encyclopedia.thefreedictionary.com/Lens+(anatomy, ORCiD:0000-0001-9114-8737]
synonym: "lenses" EXACT PLURAL []
xref: TAO:0000035
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001679 ! solid lens vesicle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005566 ! anterior segment eye
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000036
name: liver and biliary system
namespace: zebrafish_anatomy
def: "System responsible for the production and movement of bile." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000036
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000037
name: anatomical structure
namespace: zebrafish_anatomy
def: "Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anatomical structures" EXACT PLURAL []
xref: CARO:0000003
xref: TAO:0000037
is_a: ZFA:0100000 ! zebrafish anatomical entity
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000038
name: margin
namespace: zebrafish_anatomy
def: "Embryonic structure, the edge of the blastoderm." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000038
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000022 ! gastrula:bud
relationship: start ZFS:0000016 ! blastula:30%-epiboly

[Term]
id: ZFA:0000039
name: median axial vein
namespace: zebrafish_anatomy
xref: TAO:0000039
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000040
name: median fin fold
namespace: zebrafish_anatomy
def: "Surface structure that will develop into one of the median fins.  Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the  vent." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "median fin" RELATED []
xref: TAO:0000040
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000037 ! larval:day 5
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000041
name: mesoderm
namespace: zebrafish_anatomy
xref: TAO:0000041
is_a: ZFA:0001122 ! primary germ layer
relationship: develops_from ZFA:0001377 ! presumptive mesoderm
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000042
name: midbrain hindbrain boundary
namespace: zebrafish_anatomy
def: "The boundary between the mesencephalon and the rhombencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "isthmus" EXACT []
synonym: "mhb" EXACT []
synonym: "midbrain-hindbrain boundary" EXACT []
xref: TAO:0000042
is_a: ZFA:0001689 ! anatomical line
relationship: develops_from ZFA:0007047 ! midbrain hindbrain boundary neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000043
name: muscle pioneer somite 1
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 1" EXACT PLURAL []
xref: TAO:0000043
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000072 ! somite 1
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000044
name: myotome somite 14
namespace: zebrafish_anatomy
def: "Portion of somite 14 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000044
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000726 ! somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000045
name: neural crest
namespace: zebrafish_anatomy
def: "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000045
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0007082 ! neural plate border
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000046
name: retinal neural layer
namespace: zebrafish_anatomy
def: "Portion of retina composed of  all the neural tissues in the retina." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "neural retina" EXACT []
synonym: "neuroretina" EXACT []
xref: TAO:0000046
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001071 ! presumptive neural retina
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000152 ! retina
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000047
name: peripheral olfactory organ
namespace: zebrafish_anatomy
def: "Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "nasal sac" EXACT []
synonym: "nose" RELATED []
xref: TAO:0000047
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0000048 ! olfactory placode
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001149 ! olfactory system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000048
name: olfactory placode
namespace: zebrafish_anatomy
def: "Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "olfactory placodes" EXACT PLURAL []
xref: TAO:0000048
is_a: ZFA:0001309 ! neurogenic placode
relationship: develops_from ZFA:0007062 ! olfactory field
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001149 ! olfactory system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000049
name: optic recess
namespace: zebrafish_anatomy
def: "Lumen of optic stalk." [ZFIN:ZDB-PUB-101008-1]
synonym: "optic recesses" EXACT PLURAL []
xref: TAO:0000049
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000050
name: optic vesicle
namespace: zebrafish_anatomy
def: "Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "optic vesicles" EXACT PLURAL []
xref: TAO:0000050
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000570 ! optic primordium
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: part_of ZFA:0001678 ! immature eye
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000051
name: otic vesicle
namespace: zebrafish_anatomy
def: "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)" [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "otic capsule" RELATED []
synonym: "otocyst" EXACT []
synonym: "ov" EXACT []
xref: TAO:0000051
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000138 ! otic placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000052
name: dorsal actinotrichium
namespace: zebrafish_anatomy
def: "Actinotrichium which is part of the dorsal fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dorsal actinotrichia" EXACT PLURAL []
xref: TAO:0000052
is_a: ZFA:0000089 ! fin fold actinotrichium
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000102 ! dorsal fin fold
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000053
name: presumptive segmental plate
namespace: zebrafish_anatomy
def: "Embryonic structure part of the mesoderm fated to become segmental plate." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "presumptive segmental plates" EXACT PLURAL []
xref: TAO:0000053
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0000041 ! mesoderm
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000054
name: pericardium
namespace: zebrafish_anatomy
def: "Serous membrane that surrounds the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pericardial sac" EXACT []
xref: TAO:0000054
is_a: ZFA:0005425 ! serous membrane
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007115 ! pericardial region
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000056
name: pharynx
namespace: zebrafish_anatomy
def: "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000056
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000058
name: polster
namespace: zebrafish_anatomy
def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000058
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000004 ! anterior axial hypoblast
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000060 ! prechordal plate
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000059
name: postoptic commissure
namespace: zebrafish_anatomy
synonym: "POC" EXACT []
synonym: "post optic commissure" EXACT []
synonym: "post-optic commissure" EXACT []
xref: TAO:0000059
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000060
name: prechordal plate
namespace: zebrafish_anatomy
def: "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000060
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001204 ! axial mesoderm
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000062
name: presumptive forebrain
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the forebrain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "presumptive prosencephalon" EXACT []
xref: TAO:0000062
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0000146 ! presumptive brain
relationship: part_of ZFA:0007014 ! anterior presumptive neural plate
relationship: start ZFS:0000019 ! gastrula:shield

[Term]
id: ZFA:0000063
name: presumptive neural plate
namespace: zebrafish_anatomy
alt_id: ZFA:0000061
def: "Region of the gastrula which gives rise to the neural plate." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880]
synonym: "neurectoderm" RELATED []
synonym: "presumptive central nervous system" EXACT []
synonym: "prospective neuroectoderm" EXACT []
synonym: "prospective vegetal ectoderm" EXACT []
xref: TAO:0000063
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000021 ! gastrula:90%-epiboly
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000064
name: presumptive retinal pigmented epithelium
namespace: zebrafish_anatomy
def: "Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "outer layer optic cup" EXACT []
synonym: "presumptive pigmented epithelia" EXACT PLURAL []
xref: TAO:0000064
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001202 ! optic cup
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000066
name: proctodeum
namespace: zebrafish_anatomy
def: "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anus" RELATED []
xref: TAO:0000066
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000112 ! gut
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000067
name: pronephric mesoderm
namespace: zebrafish_anatomy
def: "Intermediate mesoderm that is located beneath the anterior somites and gives rise to the pronephros and pronephric duct." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000606-4]
synonym: "pronephric primordium" EXACT [ZFIN:ZDB-PUB-000606-4]
xref: TAO:0000067
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0001206 ! intermediate mesoderm
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000068
name: proneural cluster
namespace: zebrafish_anatomy
def: "Cluster of cells in the neural plate that have the potential to become neuroblast." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-990921-1]
synonym: "proneural clusters" EXACT PLURAL []
xref: TAO:0000068
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0000132 ! neural plate
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000069
name: rhombomere 6
namespace: zebrafish_anatomy
def: "Hindbrain segment or neuromere posterior to rhombomere 5" [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "r6" EXACT []
xref: TAO:0000069
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001210 ! presumptive rhombomere 6
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000070
name: sensory axons peripheral
namespace: zebrafish_anatomy
comment: Consider post-composing  term ZFA:0009053  sensory neuron  with GO:0030424 axon
xref: TAO:0000070
is_obsolete: true

[Term]
id: ZFA:0000071
name: shield
namespace: zebrafish_anatomy
def: "Embryonic structure that is a local accumulation of cells along the germ ring.  The shield marks the dorsal side of the embryo." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "dorsal organizer" EXACT []
synonym: "organizer" EXACT []
synonym: "Spemann Mangold organizer" EXACT []
synonym: "Spemann's organizer" EXACT []
xref: TAO:0000071
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000019 ! gastrula:shield
relationship: part_of ZFA:0000111 ! germ ring
relationship: start ZFS:0000019 ! gastrula:shield

[Term]
id: ZFA:0000072
name: somite 1
namespace: zebrafish_anatomy
def: "Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000072
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000073
name: somite 5
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000073
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000074
name: somite 26
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000074
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000075
name: spinal cord
namespace: zebrafish_anatomy
alt_id: ZFA:0001664
synonym: "medulla spinalis" EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "spinal cord structure" RELATED []
xref: TAO:0000075
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0007042 ! spinal cord neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000076
name: swim bladder
namespace: zebrafish_anatomy
def: "The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distributed more widely." [ZFIN:ZDB-PUB-060306-11]
synonym: "gas bladder" EXACT []
xref: TAO:0000076
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0005335 ! swim bladder bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0000077
name: tail bud
namespace: zebrafish_anatomy
synonym: "tail bud mesenchyme" RELATED []
synonym: "tailbud" EXACT []
xref: TAO:0000077
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000038 ! margin
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000078
name: ventral actinotrichium
namespace: zebrafish_anatomy
def: "Actinotrichium which is part of the ventral fin fold." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ventral actinotrichia" EXACT PLURAL []
xref: TAO:0000078
is_a: ZFA:0000089 ! fin fold actinotrichium
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001069 ! ventral fin fold
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000079
name: telencephalon
namespace: zebrafish_anatomy
def: "The anterior and dorsal forebrain neuromere. In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000079
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000571 ! presumptive telencephalon
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000109 ! forebrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000080
name: trigeminal neural crest
namespace: zebrafish_anatomy
def: "Cranial neural crest which gives rise to the trigeminal ganglion." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000080
is_a: ZFA:0001194 ! cranial neural crest
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000081
name: trunk mesenchyme
namespace: zebrafish_anatomy
xref: TAO:0000081
is_a: ZFA:0000393 ! mesenchyme
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000082
name: vein
namespace: zebrafish_anatomy
def: "Vessels that carry blood to the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "venous system" RELATED []
xref: TAO:0000082
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001079 ! blood vasculature
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000083
name: ventral mesoderm
namespace: zebrafish_anatomy
xref: TAO:0000083
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000084
name: yolk
namespace: zebrafish_anatomy
alt_id: ZFA:0009197
def: "Giant syncytial uncleaved cell containing nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "yolk cell" EXACT []
xref: CL:0000428
xref: TAO:0000084
is_a: ZFA:0009000 ! cell
relationship: end ZFS:0000037 ! larval:day 5
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000085
name: apical ectodermal ridge pectoral fin bud
namespace: zebrafish_anatomy
alt_id: ZFA:0000736
def: "Apical ectodermal ridge that is part of the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "AER pectoral fin" EXACT []
synonym: "apical ectodermal ridge pectoral fin" EXACT []
synonym: "apical ectodermal ridge pectoral fin buds" EXACT PLURAL []
synonym: "apical ectodermal ridge pectoral fins" EXACT []
synonym: "apical fold pectoral fin" EXACT []
xref: TAO:0000085
xref: TAO:0000736
is_a: ZFA:0001702 ! apical ectodermal ridge
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: part_of ZFA:0000141 ! pectoral fin bud
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000086
name: EVL
namespace: zebrafish_anatomy
def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm." [ZFIN:ZDB-PUB-961014-576]
synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000086
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0001484 ! superficial blastomere
relationship: end ZFS:0000021 ! gastrula:90%-epiboly
relationship: part_of ZFA:0001176 ! blastoderm
relationship: start ZFS:0000016 ! blastula:30%-epiboly

[Term]
id: ZFA:0000088
name: yolk syncytial layer
namespace: zebrafish_anatomy
def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm." [ZFIN:ZDB-PUB-961014-576]
synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576]
synonym: "yolk sac" RELATED []
synonym: "YSL" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000088
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000084 ! yolk
relationship: develops_from ZFA:0000541 ! marginal blastomere
relationship: end ZFS:0000037 ! larval:day 5
relationship: start ZFS:0000011 ! blastula:1k-cell

[Term]
id: ZFA:0000089
name: fin fold actinotrichium
namespace: zebrafish_anatomy
def: "Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm]
synonym: "fin fold actinotrichia" EXACT PLURAL []
synonym: "median fin fold actinotrichium" EXACT []
xref: TAO:0000089
is_a: ZFA:0005435 ! actinotrichium
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000040 ! median fin fold
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000090
name: apical ectodermal ridge dorsal fin
namespace: zebrafish_anatomy
def: "Apical ectodermal ridge that is part of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000090
is_a: ZFA:0001702 ! apical ectodermal ridge
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001173 ! dorsal fin
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000091
name: axial chorda mesoderm
namespace: zebrafish_anatomy
alt_id: ZFA:0001219
def: "Notochord rudiment." [ZFIN:ZDB-PUB-961014-576]
synonym: "chorda mesoderm" EXACT []
synonym: "chordamesoderm" EXACT []
synonym: "presumptive notochord" EXACT []
xref: TAO:0000091
xref: TAO:0001219
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0001204 ! axial mesoderm
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000092
name: axis
namespace: zebrafish_anatomy
def: "Organism subdivision running along the rostral-caudal axis of the early embryo." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "midline" EXACT []
xref: TAO:0000092
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: start ZFS:0000017 ! gastrula:50%-epiboly

[Term]
id: ZFA:0000093
name: blastomere
namespace: zebrafish_anatomy
def: "Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula." [ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "blastomeres" EXACT PLURAL []
xref: TAO:0000093
is_a: ZFA:0009000 ! cell
relationship: end ZFS:0000015 ! blastula:dome
relationship: part_of ZFA:0001175 ! blastodisc
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000094
name: blood island
namespace: zebrafish_anatomy
def: "Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension." [ZFIN:ZDB-PUB-961014-576]
synonym: "blood islands" EXACT PLURAL []
synonym: "caudal hematopoietic tissue" RELATED []
synonym: "posterior blood island" RELATED []
synonym: "posterior ICM" EXACT []
xref: TAO:0000094
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000033 ! intermediate cell mass of mesoderm
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000095
name: pharyngeal arch 3-7 skeleton
namespace: zebrafish_anatomy
def: "Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention." [ZFIN:ZDB-PUB-961014-576]
synonym: "branchial arch skeleton" EXACT []
synonym: "gill arches 1-5 skeleton" EXACT []
xref: TAO:0000095
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001216 ! splanchnocranium
relationship: part_of ZFA:0001613 ! pharyngeal arch 3-7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000096
name: cardinal system
namespace: zebrafish_anatomy
def: "Blood vasculature comprised of the cardinal veins." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000096
is_a: ZFA:0001079 ! blood vasculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000097
name: carotid artery
namespace: zebrafish_anatomy
def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000097
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000098
name: proliferative region
namespace: zebrafish_anatomy
def: "Anatomical cluster which consists of rapidly dividing cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cell cycle" RELATED []
synonym: "cell division" RELATED []
synonym: "proliferation" RELATED []
xref: TAO:0000098
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000012 ! blastula:high

[Term]
id: ZFA:0000099
name: brain vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the brain." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000099
is_a: ZFA:0001267 ! cranial vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000100
name: cerebellum
namespace: zebrafish_anatomy
def: "Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here." [ISBN:3764351209, ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000100
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001442 ! upper rhombic lip
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000101
name: diencephalon
namespace: zebrafish_anatomy
def: "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis)." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000101
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000574 ! presumptive diencephalon
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000109 ! forebrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000102
name: dorsal fin fold
namespace: zebrafish_anatomy
def: "Region of the median fin fold that develops into the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000102
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000037 ! larval:day 5
relationship: part_of ZFA:0000040 ! median fin fold
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000103
name: embryo
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFS:0000002
consider: ZFS:0000003
consider: ZFS:0000004
consider: ZFS:0000005
consider: ZFS:0000006
consider: ZFS:0000007
consider: ZFS:0000008
consider: ZFS:0000009
consider: ZFS:0000010
consider: ZFS:0000011
consider: ZFS:0000012
consider: ZFS:0000013
consider: ZFS:0000014
consider: ZFS:0000015
consider: ZFS:0000016
consider: ZFS:0000017
consider: ZFS:0000018
consider: ZFS:0000019
consider: ZFS:0000020
consider: ZFS:0000021
consider: ZFS:0000022
consider: ZFS:0000023
consider: ZFS:0000024
consider: ZFS:0000025
consider: ZFS:0000026
consider: ZFS:0000027
consider: ZFS:0000028
consider: ZFS:0000029
consider: ZFS:0000030
consider: ZFS:0000031
consider: ZFS:0000032

[Term]
id: ZFA:0000104
name: lateral cells
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0000105
name: epidermis
namespace: zebrafish_anatomy
def: "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present." [ZFIN:ZDB-PUB-040726-12]
xref: TAO:0000105
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0000016 ! ectoderm
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000106
name: extension
namespace: zebrafish_anatomy
def: "The posterior elongated region of the yolk cell that forms during the segmentation period." [ZFIN:ZDB-PUB-961014-576]
synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000106
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0000084 ! yolk
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000107
name: eye
namespace: zebrafish_anatomy
def: "Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "eyes" EXACT PLURAL []
xref: TAO:0000107
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0001678 ! immature eye
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001114 ! head
relationship: part_of ZFA:0001127 ! visual system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000108
name: fin
namespace: zebrafish_anatomy
def: "Surface structure involved in locomotion." [TAO:WD]
synonym: "fins" EXACT PLURAL []
xref: TAO:0000108
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000109
name: forebrain
namespace: zebrafish_anatomy
def: "The most anterior region the brain including both the telencephalon and diencephalon." [ZFIN:ZDB-PUB-961014-576]
synonym: "prosencephalon" EXACT []
xref: TAO:0000109
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0007041 ! forebrain neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000110
name: fourth ventricle
namespace: zebrafish_anatomy
def: "Fluid-filled brain cavity. Most posterior brain ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "4th ventricle" EXACT []
synonym: "hindbrain ventricle" EXACT []
synonym: "rhombencephalic ventricle" EXACT []
synonym: "rhombencephalic vesicle" EXACT []
synonym: "ventricle IV" EXACT []
synonym: "ventriculus rhombencephali" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000110
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: part_of ZFA:0001261 ! ventricular system
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000111
name: germ ring
namespace: zebrafish_anatomy
def: "Embryonic structure that forms as a thickened annulus at the blastoderm rim.  The germ ring is thickened because it  is the involuting margin of the blastoderm." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000111
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000038 ! margin
relationship: end ZFS:0000022 ! gastrula:bud
relationship: start ZFS:0000018 ! gastrula:germ-ring

[Term]
id: ZFA:0000112
name: gut
namespace: zebrafish_anatomy
def: "The alimentary or digestive tract, and associated organs." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "alimentary canal" EXACT []
synonym: "enteric tract" EXACT []
synonym: "gut tube" EXACT []
xref: TAO:0000112
is_a: ZFA:0001512 ! anatomical group
relationship: develops_from ZFA:0000017 ! endoderm
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000113
name: head mesenchyme
namespace: zebrafish_anatomy
def: "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head." [http://www.Biology-Text.com]
xref: TAO:0000113
is_a: ZFA:0000393 ! mesenchyme
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000114
name: heart
namespace: zebrafish_anatomy
def: "Blood pumping organ composed of four components: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000114
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0000360 ! heart tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: part_of ZFA:0007115 ! pericardial region
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000115
name: heart rudiment
namespace: zebrafish_anatomy
def: "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5 hpf and 22 hpf, and eventually telescope out into the primitive heart tube at 24hpf." [ZFIN:ZDB-PUB-010219-2]
synonym: "heart cone" EXACT []
synonym: "rudimentary heart" EXACT []
xref: TAO:0000115
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000028 ! heart primordium
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000116
name: macula lagena
namespace: zebrafish_anatomy
def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells.  The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4]
synonym: "maculae lagena" EXACT PLURAL []
xref: TAO:0000116
is_a: ZFA:0000386 ! macula
relationship: develops_from ZFA:0000558 ! posterior macula
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000374 ! lagena
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000117
name: hypoblast
namespace: zebrafish_anatomy
def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm." [ZFIN:ZDB-PUB-961014-576]
synonym: "mesendoderm" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000117
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000711 ! DEL
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0000111 ! germ ring
relationship: start ZFS:0000018 ! gastrula:germ-ring

[Term]
id: ZFA:0000118
name: hypophysis
namespace: zebrafish_anatomy
def: "A compound organ which is an endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non-neuroectodermal origin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pituitary" EXACT []
xref: TAO:0000118
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000119
name: retinal inner nuclear layer
namespace: zebrafish_anatomy
def: "Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-970602-3]
synonym: "inner nuclear layer" EXACT PLURAL []
synonym: "intermediate cell layer" EXACT []
xref: TAO:0000119
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000120
name: lateral line ganglion
namespace: zebrafish_anatomy
def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lateral line ganglia" EXACT PLURAL []
synonym: "llg" EXACT []
xref: TAO:0000120
is_a: ZFA:0000013 ! cranial ganglion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000034 ! lateral line system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000121
name: lateral plate mesoderm
namespace: zebrafish_anatomy
synonym: "lateral plate" EXACT []
synonym: "LPM" EXACT []
xref: TAO:0000121
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000122
name: lens placode
namespace: zebrafish_anatomy
def: "Ectodermal primordium of the lens of the eye." [ZFIN:ZDB-PUB-961014-576]
synonym: "lens placodes" EXACT PLURAL []
xref: TAO:0000122
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000026 ! segmentation:14-19 somites
relationship: part_of ZFA:0000016 ! ectoderm
relationship: part_of ZFA:0001678 ! immature eye
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000123
name: liver
namespace: zebrafish_anatomy
def: "Solid compound organ with three lobes that has many functions including bile production, blood detoxification, the production of critical plasma proteins and clotting factors, complement proteins  and the storage of many substances, such as lipids, amino acids, iron, and glycogen. Female fish produce vitellogenins in the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030115-26, ZFIN:ZDB-PUB-090407-7, ZFIN:ZDB-PUB-100730-19]
xref: TAO:0000123
is_a: ZFA:0001491 ! solid compound organ
relationship: develops_from ZFA:0000124 ! liver primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000036 ! liver and biliary system
relationship: part_of ZFA:0000339 ! digestive system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000124
name: liver primordium
namespace: zebrafish_anatomy
def: "Embryonic primordium that develops into the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "liver bud" EXACT []
xref: TAO:0000124
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0005738 ! intestinal bulb primordium
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000036 ! liver and biliary system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000125
name: mandibular lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast mandibular" EXACT []
synonym: "neuromasts mandibular" EXACT PLURAL []
xref: TAO:0000125
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000259 ! mandibular lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000126
name: centrum
namespace: zebrafish_anatomy
def: "Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "autocentrum" EXACT []
xref: TAO:0000126
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001189 ! vertebra
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000127
name: mesenchyme condensations
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0000128
name: midbrain
namespace: zebrafish_anatomy
def: "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally." [ZFIN:ZDB-PUB-961014-576]
synonym: "mesencephalon" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000128
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0007039 ! midbrain neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000130
name: olfactory pit
namespace: zebrafish_anatomy
synonym: "nasal canal" EXACT []
synonym: "nasal cavity" EXACT []
synonym: "nasal pit" EXACT []
synonym: "olfactory cavity" EXACT []
xref: TAO:0000130
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000047 ! peripheral olfactory organ
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000131
name: neural keel
namespace: zebrafish_anatomy
def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
synonym: "presumptive central nervous system" RELATED []
xref: TAO:0000131
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000132 ! neural plate
relationship: end ZFS:0000025 ! segmentation:10-13 somites
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000132
name: neural plate
namespace: zebrafish_anatomy
def: "Portion of tissue that is the earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium." [ZFIN:ZDB-PUB-961014-576]
synonym: "presumptive central nervous system" RELATED []
xref: TAO:0000132
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000063 ! presumptive neural plate
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000133
name: neural rod
namespace: zebrafish_anatomy
def: "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube." [ZFIN:ZDB-PUB-961014-576]
synonym: "presumptive central nervous system" RELATED []
xref: TAO:0000133
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000131 ! neural keel
relationship: end ZFS:0000026 ! segmentation:14-19 somites
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000135
name: notochord
namespace: zebrafish_anatomy
def: "Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms." [ZFIN:ZDB-PUB-961014-576]
synonym: "notocord" EXACT []
xref: TAO:0000135
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000091 ! axial chorda mesoderm
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000136
name: otic lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast otic" EXACT []
synonym: "neuromasts otic" EXACT PLURAL []
xref: TAO:0000136
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000464 ! otic lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000137
name: optic stalk
namespace: zebrafish_anatomy
def: "Portion of tissue that provides a pathway for axon migration from the retina.   The cells of the optic stalk later differentiate into glial cells of the optic  nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-030210-6, ZFIN:ZDB-PUB-101201-28]
synonym: "optic stalks" EXACT PLURAL []
xref: TAO:0000137
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0007031 ! anterior neural rod
relationship: end ZFS:0000037 ! larval:day 5
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000138
name: otic placode
namespace: zebrafish_anatomy
def: "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the mid-segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)" [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000138
is_a: ZFA:0001310 ! dorsolateral placode
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0001138 ! vestibuloauditory system
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000140
name: pancreas
namespace: zebrafish_anatomy
def: "The pancreas is an organ composed of endocrine and exocrine glandular tissue that produce hormones and digestive enzymes.  Unlike in other studied vertebrates the pancreas in zebrafish develops from two buds, one anterior  and one posterior. In adult fish the main pancreas is located on the right side attached to the lateral aspect of the intestine by the pancreatic duct. Typically, one large islet and 3-6 smaller islets occupy the main pancreas. The tail of the pancreas is embedded with single beta cells or clusters of small islets and extends caudally along the right side of the intestine." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030902-16, ZFIN:ZDB-PUB-090616-17]
xref: TAO:0000140
is_a: ZFA:0000496 ! compound organ
relationship: develops_from ZFA:0001390 ! pancreatic bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001371 ! pancreatic system
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000141
name: pectoral fin bud
namespace: zebrafish_anatomy
def: "Fin bud that develops into the pectoral fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pectoral fin buds" EXACT PLURAL []
xref: TAO:0000141
is_a: ZFA:0001383 ! fin bud
relationship: develops_from ZFA:0001453 ! pectoral fin field
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000142
name: peripheral nervous system
namespace: zebrafish_anatomy
def: "Nervous structures including ganglia outside of the central nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "pns" EXACT []
xref: TAO:0000142
is_a: ZFA:0000396 ! nervous system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000143
name: retinal photoreceptor layer
namespace: zebrafish_anatomy
def: "The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closest to the sclera." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-677]
synonym: "retinal photoreceptor layers" EXACT PLURAL []
xref: TAO:0000143
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000144
name: retinal pigmented epithelium
namespace: zebrafish_anatomy
def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "pigmented epithelium" EXACT []
synonym: "pigmented retina" EXACT []
synonym: "pigmented retinal epithelium" EXACT []
synonym: "PRE" EXACT []
synonym: "RPE" EXACT []
xref: TAO:0000144
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0000064 ! presumptive retinal pigmented epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000152 ! retina
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000146
name: presumptive brain
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the brain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "brain rudiment" EXACT []
xref: TAO:0000146
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0000063 ! presumptive neural plate
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000148
name: presumptive midbrain
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the midbrain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "presumptive mesencephalon" EXACT []
xref: TAO:0000148
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0000146 ! presumptive brain
relationship: part_of ZFA:0007014 ! anterior presumptive neural plate
relationship: start ZFS:0000019 ! gastrula:shield

[Term]
id: ZFA:0000149
name: primitive heart tube
namespace: zebrafish_anatomy
def: "Multi-tissue structure that arises from the heart rudiment and will become the heart tube." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010219-2]
xref: TAO:0000149
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000115 ! heart rudiment
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: part_of ZFA:0007115 ! pericardial region
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000150
name: pronephric duct
namespace: zebrafish_anatomy
def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-071029-9, ZFIN:ZDB-PUB-961014-576]
synonym: "pronephric ducts" EXACT PLURAL []
xref: TAO:0000150
is_a: ZFA:0005171 ! duct
relationship: develops_from ZFA:0000067 ! pronephric mesoderm
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000151 ! pronephros
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000151
name: pronephros
namespace: zebrafish_anatomy
def: "The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "embryonic kidney" EXACT [ZFIN:ZDB-PUB-961014-576]
synonym: "pronephric nephron" EXACT []
xref: TAO:0000151
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0000067 ! pronephric mesoderm
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000163 ! renal system
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000152
name: retina
namespace: zebrafish_anatomy
def: "Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "retinas" EXACT PLURAL []
xref: TAO:0000152
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001202 ! optic cup
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005567 ! posterior segment eye
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000153
name: rhombomere 8
namespace: zebrafish_anatomy
def: "Posteriormost hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576]
synonym: "r8" EXACT []
xref: TAO:0000153
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001214 ! presumptive rhombomere 8
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000154
name: sinus venosus
namespace: zebrafish_anatomy
def: "Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "inflow tract" EXACT []
xref: TAO:0000154
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001722 ! presumptive sinus venosus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000155
name: somite
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "somitic mesoderm" RELATED []
xref: TAO:0000155
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000279 ! segmental plate
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001115 ! trunk
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000156
name: somite 20
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000156
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000157
name: somite 30
namespace: zebrafish_anatomy
def: "Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000157
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000158
name: urostyle
namespace: zebrafish_anatomy
def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Develops from the fused preural centrum 1+ ural centrum 1." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-011008-1]
synonym: "compound centrum" EXACT []
synonym: "last vertebra" EXACT []
synonym: "ultimate vertebra" EXACT []
xref: TAO:0000158
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001581 ! ural centrum 2
relationship: develops_from ZFA:0001583 ! preural centrum 1+ ural centrum 1
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000159
name: tectal ventricle
namespace: zebrafish_anatomy
synonym: "cerebral aqueduct" EXACT []
synonym: "medial tectal ventricle" EXACT []
synonym: "mesencephalic ventricle" EXACT []
synonym: "mesencephalic vesicle" EXACT []
synonym: "midbrain ventricle" EXACT []
synonym: "ventriculus mesencephali" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000159
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: part_of ZFA:0001261 ! ventricular system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000160
name: tegmentum
namespace: zebrafish_anatomy
alt_id: ZFA:0001354
def: "Multi-tissue structure that is the ventral part of the midbrain and develops from the basal plate. The tegmentum is bordered rostrally by the synencephalon, dorsal thalamus and posterior tuberculum, ventrally by the hypothalamus, and dorsolaterally by the torus semicircularis; caudally the tegmentum is continuous with the medulla oblongata." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "mesencephalic tegmentum" EXACT []
synonym: "midbrain tegmentum" EXACT []
xref: TAO:0000160
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000761 ! basal plate midbrain region
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: part_of ZFA:0001707 ! brainstem
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000161
name: third ventricle
namespace: zebrafish_anatomy
def: "Fluid-filled brain cavity." [ZFIN:ZDB-PUB-961014-576]
synonym: "3rd ventricle" EXACT []
synonym: "diencephalic ventricle" EXACT []
synonym: "diencephalic vesicle" EXACT []
synonym: "ventriculus diencephali" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000161
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001259 ! forebrain ventricle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: part_of ZFA:0001261 ! ventricular system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000162
name: trigeminal placode
namespace: zebrafish_anatomy
def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "trigeminal placodes" EXACT PLURAL []
xref: TAO:0000162
is_a: ZFA:0001310 ! dorsolateral placode
relationship: end ZFS:0000026 ! segmentation:14-19 somites
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000163
name: renal system
namespace: zebrafish_anatomy
def: "System that removes and collects metabolic waste from the blood while maintaining ion homeostasis." [ZFIN:ZDB-PUB-071029-9]
synonym: "urinary system" RELATED []
xref: TAO:0000163
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000164
name: ventral mesenchyme
namespace: zebrafish_anatomy
xref: TAO:0000164
is_a: ZFA:0000393 ! mesenchyme
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000165
name: inferior lobe
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "inferior lobe of hypothalamus" EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "inferior lobes" EXACT PLURAL []
synonym: "lateral lobe of hypothalamus" EXACT []
synonym: "lobus inferior hypothalami" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000165
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000347 ! dorsal hypothalamic zone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000166
name: lateral crista
namespace: zebrafish_anatomy
alt_id: ZFA:0000378
def: "Patch of thickened, pseudostratified epithelium that is associated with the lateral semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The lateral crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lateral crista ampullaris" EXACT []
synonym: "lateral cristae" EXACT PLURAL []
synonym: "lateral semicircular canal sensory patch" EXACT []
synonym: "lateral semicircular canal sensory patches" EXACT PLURAL []
synonym: "lc" EXACT []
synonym: "medial crista" RELATED [ZFIN:ZDB-PUB-051116-3]
xref: TAO:0000166
is_a: ZFA:0007068 ! otic epithelium
relationship: develops_from ZFA:0000225 ! lateral crista primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000220 ! lateral semicircular canal
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000167
name: anal fin skeleton
namespace: zebrafish_anatomy
def: "Median fin skeleton that is located posterior to the anus." [TAO:curator]
xref: TAO:0000167
is_a: ZFA:0001123 ! axial fin skeleton
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001162 ! anal fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000168
name: anterior macula
namespace: zebrafish_anatomy
def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)" [GOC:ymb, http://zfin.org/zf_info/anatomy/dict/sens/sens.html, ORCiD:0000-0002-9900-7880]
synonym: "am" EXACT []
synonym: "anterior sensory patch" EXACT []
xref: TAO:0000168
is_a: ZFA:0000386 ! macula
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001671 ! macula communis
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000169
name: antorbital
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001410

[Term]
id: ZFA:0000170
name: basibranchial
namespace: zebrafish_anatomy
def: "Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "basibranchials" EXACT PLURAL []
xref: TAO:0000170
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001220 ! copula
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000171
name: basisphenoid
namespace: zebrafish_anatomy
comment: A basisphenoid is absent in Danio rerio; its absence is a shared derived feature of all ostariophysan fishes (Fink and Fink, '81). from ZDB-PUB-961014-192
is_obsolete: true

[Term]
id: ZFA:0000172
name: branchial muscle
namespace: zebrafish_anatomy
def: "Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches." [GOC:CVS, ORCiD:0000-0002-2244-7917]
synonym: "branchial muscles" EXACT PLURAL []
xref: TAO:0000172
is_a: ZFA:0001652 ! head muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001307 ! pharyngeal musculature
relationship: part_of ZFA:0001613 ! pharyngeal arch 3-7
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000173
name: bulbus arteriosus
namespace: zebrafish_anatomy
def: "Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches." [ZFIN:ZDB-PUB-001026-2]
synonym: "cardiac outflow tract" EXACT []
synonym: "outflow tract" EXACT []
synonym: "truncus" EXACT []
xref: TAO:0000173
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001712 ! presumptive bulbus arteriosus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000174
name: cerebellovestibular tract
namespace: zebrafish_anatomy
def: "Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-090422-9]
synonym: "caudal cerebellar tract" EXACT []
synonym: "caudal cerebellar tracts" EXACT PLURAL []
synonym: "cerebellovestibular tracts" EXACT PLURAL []
xref: TAO:0000174
is_a: ZFA:0001708 ! cerebellar white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000175
name: posterior lateral line nerve
namespace: zebrafish_anatomy
def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:ZDB-PUB-000523-3, ZFIN:ZDB-PUB-961014-763]
synonym: "caudal lateral line nerve" EXACT []
xref: TAO:0000175
is_a: ZFA:0000641 ! cranial nerve
is_a: ZFA:0001479 ! lateral line nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001471 ! posterior lateral line system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000176
name: lateral nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali, nucleus lateralis" EXACT []
xref: TAO:0002204
is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon
relationship: develops_from ZFA:0005911 ! presumptive lateral nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000177
name: caudal oblique
namespace: zebrafish_anatomy
synonym: "caudal obliques" EXACT PLURAL []
xref: TAO:0000177
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000178
name: caudal peduncle
namespace: zebrafish_anatomy
def: "Portion of the fish's body that is posterior to the vent and anterior to the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000178
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001117 ! post-vent region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000179
name: caudal root of abducens nerve
namespace: zebrafish_anatomy
def: "Cranial nerve root which is part of the abducens nerve (CN-VI) and is located at the level of the intermediate reticular formation. Fuses with the rostral root of the abducens nerve and courses rostrally once outside the brain stem. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209]
synonym: "radix caudalis nervi abducentis" EXACT []
xref: TAO:0000179
is_a: ZFA:0001663 ! cranial nerve root
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000310 ! cranial nerve VI
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000180
name: caudal vein
namespace: zebrafish_anatomy
def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "CV" EXACT []
xref: TAO:0000180
is_a: ZFA:0000082 ! vein
relationship: develops_from ZFA:0001286 ! caudal vein plexus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005037 ! post-vent vasculature
relationship: part_of ZFA:0005295 ! axial blood vessel
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000181
name: caudal zone of dorsal telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area dorsalis telencephali, zona posterior" EXACT []
synonym: "caudal zone of D" EXACT []
synonym: "Dp" EXACT [ZFIN:ZDB-PUB-150226-6]
synonym: "posterior zone of dorsal telencephalic area" EXACT []
xref: TAO:0000181
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000182
name: central caudal thalamic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "central posterior thalamic nucleus" EXACT []
synonym: "nucleus centralis posterior thalami" EXACT []
xref: TAO:0000182
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000653 ! dorsal thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000183
name: central pretectum
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the central part of the pretectum." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000183
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005908 ! presumptive pretectum proliferative zone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000418 ! pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000184
name: cleithrum
namespace: zebrafish_anatomy
def: "Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "cleithra" EXACT PLURAL []
xref: TAO:0000184
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000185
name: commissura rostral, pars ventralis
namespace: zebrafish_anatomy
def: "Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "commissura anterior, pars ventralis" EXACT []
xref: TAO:0000185
is_a: ZFA:0001108 ! anterior commissure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000186
name: common cardinal vein
namespace: zebrafish_anatomy
def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576]
synonym: "duct of Cuvier" EXACT []
xref: TAO:0000186
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000096 ! cardinal system
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000188
name: corpus cerebelli
namespace: zebrafish_anatomy
def: "Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "cerebellar corpus" EXACT []
synonym: "corpus cerebelli granular layer" EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "corpus cerebellum" EXACT PLURAL []
xref: TAO:0000188
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000189
name: otic region
namespace: zebrafish_anatomy
def: "Anatomical cluster of skeletal elements that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "cranial vault" RELATED []
xref: TAO:0000189
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000190
name: ganglion
namespace: zebrafish_anatomy
def: "Structures containing a collection of nerve cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ganglia" EXACT PLURAL []
xref: TAO:0000190
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000142 ! peripheral nervous system
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000191
name: dentary
namespace: zebrafish_anatomy
def: "Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "dentary bone" EXACT []
xref: TAO:0000191
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005488 ! mandibular symphysis
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001273 ! ventral mandibular arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000192
name: descending trigeminal root
namespace: zebrafish_anatomy
def: "The bundle of the sensory root of the trigeminal nerve that descends in the medulla oblongata providing somatosensory input to the nucleus of the descending trigeminal root and to the medial funicular nucleus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1280]
synonym: "radix descendens nervi trigemini" EXACT []
xref: TAO:0000192
is_a: ZFA:0001663 ! cranial nerve root
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000193
name: diffuse nucleus inferior lobe
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "diffuse nuclei" EXACT PLURAL []
synonym: "DIL" EXACT []
xref: TAO:0000193
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000165 ! inferior lobe
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000194
name: dorsal accessory optic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "nucleus opticus accessorius dorsalis" EXACT []
xref: TAO:0000194
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000183 ! central pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000195
name: dorsal depressor
namespace: zebrafish_anatomy
def: "Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "depressor dorsalis" EXACT []
synonym: "dorsal depressors" EXACT PLURAL []
xref: TAO:0000195
is_a: ZFA:0005270 ! depressor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000648 ! dorsal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000196
name: dorsal hypohyal bone
namespace: zebrafish_anatomy
def: "The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal hypohyals" EXACT PLURAL []
xref: TAO:0000196
is_a: ZFA:0001381 ! hypohyal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005457 ! dorsal hypohyal-urohyal joint
relationship: overlaps ZFA:0005458 ! dorsal hypohyal-ventral hypohyal joint
relationship: overlaps ZFA:0005467 ! ceratohyal-dorsal hypohyal joint
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000197
name: dorsal habenular nucleus
namespace: zebrafish_anatomy
def: "Habenular nucleus where the efferent projections innervate the interpeduncular nucleus.  The dorsal habenula is structurally homologous to the mammalian medial habenula." [ZFIN:ZDB-PUB-100202-7]
synonym: "dorsal habenular nuclei" EXACT PLURAL []
synonym: "dorsal nuclei" EXACT PLURAL []
xref: TAO:0000197
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000213 ! habenula
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000199
name: dorsal periventricular hypothalamus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000199
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000347 ! dorsal hypothalamic zone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000200
name: dorsal root ganglion
namespace: zebrafish_anatomy
def: "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal root ganglia" EXACT PLURAL []
synonym: "DRG" EXACT []
xref: TAO:0000200
is_a: ZFA:0001573 ! trunk ganglion
relationship: develops_from ZFA:0001024 ! trunk neural crest
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000201
name: dorsal transverse
namespace: zebrafish_anatomy
xref: TAO:0000201
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000202
name: efferent branchial artery
namespace: zebrafish_anatomy
def: "Artery that carries blood leaving the gill.  This is on the side of the aortic arch proximal to the lateral dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "EBA" EXACT []
xref: TAO:0000202
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0005004 ! aortic arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000354 ! gill
relationship: part_of ZFA:0005003 ! pharyngeal vasculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000203
name: epicentrals
namespace: zebrafish_anatomy
comment: Epicentrals are not present in D. rerio.ZDB-PUB-031103-13
is_obsolete: true

[Term]
id: ZFA:0000204
name: esophagus
namespace: zebrafish_anatomy
def: "Esophagus part of the gut that develops from endodermal precursors at the rostral end of the digestive tract.  The esophagus develops independently from the intestine." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030312-8]
synonym: "oesophagus" EXACT []
xref: TAO:0000204
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000017 ! endoderm
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000112 ! gut
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000205
name: external lateral ventral muscle
namespace: zebrafish_anatomy
def: "Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the ventral tip of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "external ventral flexor" RELATED []
synonym: "lateralis superficialis ventralis" EXACT []
synonym: "LSV" RELATED []
xref: TAO:0000205
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005818 ! superficial caudal fin musculature
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000206
name: facial nerve motor nucleus
namespace: zebrafish_anatomy
synonym: "facial motor nucleus" EXACT []
synonym: "motor nucleus VII" EXACT []
synonym: "nucleus motorius nervi facialis" EXACT []
synonym: "nVII" EXACT []
xref: TAO:0000206
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000207
name: fin musculature
namespace: zebrafish_anatomy
def: "Musculature part of fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000207
is_a: ZFA:0000548 ! musculature system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000208
name: gall bladder
namespace: zebrafish_anatomy
def: "The compound organ that stores bile." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000208
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000036 ! liver and biliary system
relationship: part_of ZFA:0000339 ! digestive system
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000209
name: lateral preglomerular nucleus
namespace: zebrafish_anatomy
def: "Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "lateral preglomerular nuclei" EXACT PLURAL []
xref: TAO:0000209
is_a: ZFA:0001662 ! preglomerular nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000210
name: gigantocellular part of magnocellular preoptic nucleus
namespace: zebrafish_anatomy
def: "Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "nucleus praeopticus magnocellularis, pars gigantocellularis" EXACT []
xref: TAO:0000210
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000248 ! magnocellular preoptic nucleus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000211
name: gill lamella
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion." [GOC:cvs, http://www.briancoad.com/Dictionary/G.htm, ORCiD:0000-0002-2244-7917]
synonym: "gill lamellae" EXACT PLURAL []
xref: TAO:0000211
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000354 ! gill
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000212
name: granular eminence
namespace: zebrafish_anatomy
alt_id: ZFA:0000187
def: "Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "EG" RELATED []
synonym: "eminentia granularis" EXACT []
synonym: "lateral granular eminence" EXACT []
xref: TAO:0000212
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000307 ! vestibulolateralis lobe
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000213
name: habenula
namespace: zebrafish_anatomy
def: "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "habenulae" EXACT PLURAL []
synonym: "habenular nucleus" EXACT []
xref: TAO:0000213
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000509 ! epithalamus
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000214
name: hypobranchial vessel
namespace: zebrafish_anatomy
comment: May be the same as hypobranchial artery and may need to be merged.
synonym: "hypobranchial vessels" EXACT PLURAL []
xref: TAO:0000214
is_obsolete: true
replaced_by: ZFA:0000673

[Term]
id: ZFA:0000215
name: inferior olive
namespace: zebrafish_anatomy
def: "Hindbrain nucleus where climbing fibers originate. The neurons in the inferior olive are capable of prolonged oscillatory activity.  The inferior olive is called a precerebellar nucleus since virtually all of the efferent axons terminate in the cerebellum." [GOC:mh, ISBN:0471888893, ORCiD:0000-0001-9114-8737]
xref: TAO:0000215
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000216
name: infracarinalis
namespace: zebrafish_anatomy
comment: This may need to be treated as a waypoint in the development of the various muscles or as a group of muscles.
xref: TAO:0000216
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000217
name: inner ear
namespace: zebrafish_anatomy
def: "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "ear" EXACT []
synonym: "otic capsule" RELATED []
synonym: "otocyst" RELATED []
xref: TAO:0000217
is_a: ZFA:0001478 ! anatomical cluster
relationship: develops_from ZFA:0000051 ! otic vesicle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001138 ! vestibuloauditory system
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000219
name: intermediate reticular formation
namespace: zebrafish_anatomy
synonym: "intermediate reticular formations" EXACT PLURAL []
xref: TAO:0000219
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000542 ! medial column
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000220
name: lateral semicircular canal
namespace: zebrafish_anatomy
alt_id: ZFA:0000361
def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear.  The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "horizontal semicircular canal" EXACT []
synonym: "lateral semicircular canals" EXACT PLURAL []
synonym: "lateral semicircular duct" EXACT []
xref: TAO:0000220
is_a: ZFA:0000431 ! semicircular canal
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000221
name: internal levator
namespace: zebrafish_anatomy
synonym: "internal levators" EXACT PLURAL []
xref: TAO:0000221
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000222
name: isthmic primary nucleus
namespace: zebrafish_anatomy
def: "Sensory trigeminal nucleus located in the most rostral position.  It lies immediately caudal to the secondary gustatory nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280]
synonym: "isthmic primary nuclei" EXACT PLURAL []
synonym: "isthmic primary sensory trigeminal nucleus" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000222
is_a: ZFA:0000433 ! sensory trigeminal nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000223
name: infraorbital 1
namespace: zebrafish_anatomy
def: "Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lachrymal bone" EXACT []
synonym: "lacrimal" EXACT []
synonym: "lacrymal bone" EXACT []
xref: TAO:0000223
is_a: ZFA:0000376 ! infraorbital
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001649 ! infraorbital series
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000224
name: larva
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFS:0000035
consider: ZFS:0000036
consider: ZFS:0000037
consider: ZFS:0000038
consider: ZFS:0000039
consider: ZFS:0000040
consider: ZFS:0000041

[Term]
id: ZFA:0000225
name: lateral crista primordium
namespace: zebrafish_anatomy
def: "Is an otic epithelium that will mature into the lateral crista." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lateral crista primordia" EXACT PLURAL []
xref: TAO:0000225
is_a: ZFA:0007068 ! otic epithelium
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0000220 ! lateral semicircular canal
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000226
name: lateral ethmoid
namespace: zebrafish_anatomy
def: "Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "lateral ethmoids" EXACT PLURAL []
xref: TAO:0000226
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001503 ! lamina orbitonasalis
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005420 ! autopalatine-lateral ethmoid joint
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000227
name: lateral hypothalamic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "arcuate nucleus" RELATED []
synonym: "lateral hypothalamic nuclei" EXACT PLURAL []
synonym: "lateral tuberal nucleus" EXACT []
xref: TAO:0000227
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000707 ! ventral hypothalamic zone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000228
name: lateral line primordium
namespace: zebrafish_anatomy
def: "Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lateral line primordia" EXACT PLURAL []
synonym: "llp" EXACT []
xref: TAO:0000228
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0000034 ! lateral line system
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000229
name: lateral olfactory tract
namespace: zebrafish_anatomy
def: "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "tractus olfactorius lateralis" EXACT []
xref: TAO:0000229
is_a: ZFA:0000597 ! telencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000230
name: longitudinal hypochordal
namespace: zebrafish_anatomy
def: "Muscle that attaches to the parhypurpophyses. The muscle inserts on the upper three to five caudal fin rays." [GOC:cvs, ISBN:0080585272, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13]
synonym: "hypochordal longitudinalis" EXACT []
xref: TAO:0000230
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000628 ! caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000231
name: lateral recess
namespace: zebrafish_anatomy
alt_id: ZFA:0005493
def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004)." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917]
synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27]
synonym: "lateral recesses" EXACT PLURAL []
synonym: "recessus lateralis" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000231
xref: TAO:0001799
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000161 ! third ventricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000232
name: otic vesicle lateral protrusion
namespace: zebrafish_anatomy
def: "Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11]
synonym: "lateral semicircular canal primordia" RELATED PLURAL []
synonym: "lateral semicircular canal primordium" RELATED []
xref: TAO:0000232
is_a: ZFA:0001715 ! otic vesicle protrusion
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000233
name: lower oral valve
namespace: zebrafish_anatomy
def: "Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity.  The oral valves control the flow of water into the mouth during routine respiration." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-060921-12]
synonym: "breathing valve" RELATED []
synonym: "buccal valve" RELATED []
synonym: "lower internal lip" EXACT [ZFIN:ZDB-PUB-060921-12]
synonym: "lower semilunar valve" EXACT [ZFIN:ZDB-PUB-060921-12]
synonym: "mandibular valve" EXACT []
xref: TAO:0000233
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000590 ! oral region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000234
name: macula neglecta
namespace: zebrafish_anatomy
def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells.   The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4]
synonym: "maculae neglecta" EXACT PLURAL []
xref: TAO:0000234
is_a: ZFA:0000386 ! macula
relationship: develops_from ZFA:0000558 ! posterior macula
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000559 ! otolith organ
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000235
name: magnocellular superficial pretectal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL []
xref: TAO:0000235
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000687 ! superficial pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000236
name: mandibular muscle
namespace: zebrafish_anatomy
def: "Muscle that are part of the  mandibular arch (pharyngeal arch 1)." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "mandibular muscles" EXACT PLURAL []
xref: TAO:0000236
is_a: ZFA:0001652 ! head muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001307 ! pharyngeal musculature
relationship: part_of ZFA:0001612 ! pharyngeal arch 1
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000237
name: medial forebrain bundle diencephalon
namespace: zebrafish_anatomy
synonym: "medial forebrain bundles diencephalon" EXACT PLURAL []
xref: TAO:0000237
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005111 ! medial forebrain bundle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000238
name: medial olfactory tract
namespace: zebrafish_anatomy
def: "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "tractus olfactorius medialis" EXACT []
xref: TAO:0000238
is_a: ZFA:0000597 ! telencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000239
name: mesocoracoid bone
namespace: zebrafish_anatomy
def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:WD]
synonym: "mesocoracoid bones" EXACT PLURAL []
xref: TAO:0000239
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001537 ! mesocoracoid cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000240
name: metapterygoid
namespace: zebrafish_anatomy
def: "The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "metapterygoids" EXACT PLURAL []
xref: TAO:0000240
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0005902 ! pterygoid process
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005469 ! hyomandibula-metapterygoid joint
relationship: overlaps ZFA:0005486 ! quadrate-metapterygoid joint
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: part_of ZFA:0005509 ! palate
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000241
name: midline column
namespace: zebrafish_anatomy
xref: TAO:0000241
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000421 ! reticular formation
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000242
name: male organism
namespace: zebrafish_anatomy
def: "Gonochoristic organism that can produce male gametes." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000027
xref: TAO:0000242
is_a: ZFA:0001094 ! whole organism
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000243
name: neuromast
namespace: zebrafish_anatomy
def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576]
synonym: "lateral line neuromast" EXACT []
synonym: "lateral line organ" EXACT []
synonym: "neuromasts" EXACT PLURAL []
xref: TAO:0000243
is_a: ZFA:0001478 ! anatomical cluster
relationship: develops_from ZFA:0005227 ! protoneuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000034 ! lateral line system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000244
name: nucleus Edinger-Westphal
namespace: zebrafish_anatomy
synonym: "Edinger-Westphal nucleus" EXACT []
xref: TAO:0000244
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000245
name: nucleus of the descending root
namespace: zebrafish_anatomy
def: "Sensory trigeminal nucleus that lies at the mediodorsal edge of the descending trigeminal root (DV).  This nucleus is not clearly delineated." [ZFIN:ZDB-PUB-961014-1280]
synonym: "sensory nucleus of the descending trigeminal root" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000245
is_a: ZFA:0000433 ! sensory trigeminal nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000246
name: nucleus taeniae
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000246
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000247
name: cranial nerve VIII
namespace: zebrafish_anatomy
synonym: "auditory nerve" EXACT []
synonym: "CN-VIII" EXACT []
synonym: "cochleovestibular nerve" RELATED [ZFIN:ZDB-PUB-190924-19]
synonym: "octaval nerve" EXACT []
synonym: "statoacoustic nerve" EXACT []
xref: TAO:0000247
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000248
name: magnocellular preoptic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "magnocellular preoptic nuclei" EXACT PLURAL []
xref: TAO:0000248
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000470 ! preoptic area
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000249
name: cranial nerve I
namespace: zebrafish_anatomy
synonym: "CN-I" EXACT []
synonym: "olfactory nerve" EXACT []
xref: TAO:0000249
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001149 ! olfactory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000250
name: opercle
namespace: zebrafish_anatomy
def: "Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series.  It is derived from the neural crest and is located in 2nd pharyngeal arch." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-120529-44]
synonym: "opercles" EXACT PLURAL []
xref: TAO:0000250
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005885 ! operculohyoid ligament
relationship: part_of ZFA:0000555 ! opercular flap
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000251
name: opercular-branchiostegal series
namespace: zebrafish_anatomy
comment: ZFIN not using series organization if at all possible.
is_obsolete: true
consider: ZFA:0000863

[Term]
id: ZFA:0000252
name: optic tract
namespace: zebrafish_anatomy
def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "optic tracts" EXACT PLURAL []
synonym: "tractus opticus" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000252
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000253
name: orbitosphenoid
namespace: zebrafish_anatomy
def: "Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "orbitosphenoids" EXACT PLURAL []
xref: TAO:0000253
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001505 ! taenia marginalis anterior
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000290 ! sphenoid region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005509 ! palate
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000254
name: pancreas primordium
namespace: zebrafish_anatomy
def: "Embryonic structure that develops into the pancreatic bud." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
comment: During normal development, the exocrine anlage arises from bilateral sets of progenitors within the blastoderm margin that migrate to the midline use and differentiate prior to joining the rostral intestine. ZDB-PUB-050623-3.
synonym: "pancreatic anlage" EXACT [ZFIN:ZDB-PUB-050623-3]
xref: TAO:0000254
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001371 ! pancreatic system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000255
name: paraxial mesoderm
namespace: zebrafish_anatomy
alt_id: ZFA:0000942
def: "Mesoderm which is lateral to the neural tube on both sides." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "paraxial mesenchyme" RELATED []
xref: TAO:0000255
is_a: ZFA:0000041 ! mesoderm
is_a: ZFA:0000081 ! trunk mesenchyme
relationship: develops_from ZFA:0000591 ! presumptive paraxial mesoderm
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000256
name: pars subcommissuralis of ventral telencephalon
namespace: zebrafish_anatomy
synonym: "pars subcommissuralis of V" EXACT []
xref: TAO:0000256
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000304 ! ventral telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000257
name: pectoral fin cartilage
namespace: zebrafish_anatomy
def: "Cartilage which is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pectoral fin cartilages" EXACT PLURAL []
xref: TAO:0000257
is_a: ZFA:0001543 ! paired fin cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000943 ! pectoral fin skeleton
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000258
name: pelvic fin musculature
namespace: zebrafish_anatomy
def: "Musculature that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000258
is_a: ZFA:0000207 ! fin musculature
relationship: develops_from ZFA:0001449 ! mesenchyme pelvic fin
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001184 ! pelvic fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000259
name: mandibular lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast.  One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "mandibular lateral lines" EXACT PLURAL []
synonym: "mandibular line" EXACT [ZFIN:ZDB-PUB-000523-3]
xref: TAO:0000259
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000260
name: periventricular nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "periventricular nuclei" EXACT PLURAL []
synonym: "ventral zone of periventricular hypothalamus" EXACT []
xref: TAO:0000260
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000707 ! ventral hypothalamic zone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000261
name: pharyngohyoid
namespace: zebrafish_anatomy
xref: TAO:0000261
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000262
name: posterior semicircular canal
namespace: zebrafish_anatomy
alt_id: ZFA:0000483
def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear.  The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "caudal vertical semicircular canal" EXACT []
synonym: "posterior semicircular canals" EXACT PLURAL []
synonym: "posterior semicircular duct" EXACT []
xref: TAO:0000262
is_a: ZFA:0000431 ! semicircular canal
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000263
name: precaudal vertebra
namespace: zebrafish_anatomy
def: "Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-031103-13]
synonym: "abdominal vertebra" RELATED []
synonym: "precaudal vertebrae" EXACT PLURAL []
synonym: "trunk vertebra" RELATED []
xref: TAO:0000263
is_a: ZFA:0001189 ! vertebra
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001115 ! trunk
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000264
name: preopercle
namespace: zebrafish_anatomy
def: "Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "preopercles" EXACT PLURAL []
xref: TAO:0000264
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000555 ! opercular flap
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000265
name: presumptive dorsal mesoderm
namespace: zebrafish_anatomy
def: "Portion of presumptive mesoderm fated to become dorsal mesoderm. Determined by fate mapping." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000265
is_a: ZFA:0001377 ! presumptive mesoderm
relationship: end ZFS:0000019 ! gastrula:shield
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000266
name: pretecto-mammillary tract
namespace: zebrafish_anatomy
synonym: "pretecto mammillary tract" EXACT []
synonym: "pretecto-mamillary tract" EXACT []
synonym: "pretectomamillary tract" EXACT []
synonym: "TPp" RELATED []
xref: TAO:0000266
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000267
name: primary olfactory fiber layer
namespace: zebrafish_anatomy
def: "Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "olfactory nerve layer" EXACT [ZFIN:ZDB-PUB-050523-2]
synonym: "stratum nervosum bulbi olfactorii" EXACT []
xref: TAO:0000267
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000402 ! olfactory bulb
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000268
name: anal fin proximal radial
namespace: zebrafish_anatomy
def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anal fin proximal radials" EXACT PLURAL []
xref: TAO:0000268
is_a: ZFA:0001646 ! anal fin radial
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001420 ! anal fin pterygiophore
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000269
name: inferior caudal ventral flexor
namespace: zebrafish_anatomy
def: "Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "CVI" RELATED []
synonym: "flexor caudalis ventralis inferioris" EXACT []
synonym: "inferior ventral flexor" EXACT []
xref: TAO:0000269
is_a: ZFA:0005271 ! flexor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005819 ! deep caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000270
name: maxilla
namespace: zebrafish_anatomy
def: "The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "maxillae" EXACT PLURAL []
xref: TAO:0000270
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005421 ! autopalatine-maxillary joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000271
name: radial
namespace: zebrafish_anatomy
def: "The  internal skeletal supports of the median and paired fins." [TAO:curator]
synonym: "radials" EXACT PLURAL []
xref: TAO:0000271
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000272
name: respiratory system
namespace: zebrafish_anatomy
def: "System responsible for the exchange of gases across the gill membranes." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000272
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000274
name: rostral octaval nucleus
namespace: zebrafish_anatomy
def: "Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "anterior octaval nucleus" EXACT []
synonym: "nucleus octavus anterior" EXACT []
xref: TAO:0000274
is_a: ZFA:0000401 ! octaval nerve sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000275
name: rostral tegmental nucleus
namespace: zebrafish_anatomy
xref: TAO:0000275
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000276
name: rostrolateral thalamic nucleus of Butler & Saidel
namespace: zebrafish_anatomy
xref: TAO:0000276
is_a: ZFA:0005576 ! ventral thalamus nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000458 ! ventral thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000277
name: scale
namespace: zebrafish_anatomy
def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:WD]
synonym: "scales" EXACT PLURAL []
xref: TAO:0000277
is_a: ZFA:0000292 ! surface structure
relationship: develops_from ZFA:0001704 ! scale primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001183 ! dermal superficial region
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0000278
name: secondary gustatory nucleus medulla oblongata
namespace: zebrafish_anatomy
xref: TAO:0000278
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000279
name: segmental plate
namespace: zebrafish_anatomy
def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "presomitic mesoderm" EXACT []
synonym: "PSM" EXACT []
xref: TAO:0000279
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000255 ! paraxial mesoderm
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000280
name: medial valvula cerebelli
namespace: zebrafish_anatomy
def: "Medial division of the valvula cerebelli." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "medial division" EXACT []
synonym: "valvula cerebelli, pars medialis" EXACT []
xref: TAO:0000280
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000281
name: hair cell posterior macula
namespace: zebrafish_anatomy
def: "Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "sensory hair cells posterior macula" EXACT PLURAL []
xref: TAO:0000281
is_a: ZFA:0009366 ! hair cell
relationship: develops_from ZFA:0001099 ! immature hair cell posterior macula
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000558 ! posterior macula
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000282
name: sensory system
namespace: zebrafish_anatomy
def: "Nervous system responsible for transmitting sensory stimuli." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "sensory systems" EXACT PLURAL []
xref: TAO:0000282
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000396 ! nervous system
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000284
name: subopercle
namespace: zebrafish_anatomy
def: "Dermal bone lying below the opercle. The subopercle is a paired bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "subopercles" EXACT PLURAL []
xref: TAO:0000284
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000555 ! opercular flap
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000285
name: superficial adductor
namespace: zebrafish_anatomy
def: "Pectoral fin muscle that develops from the primitive pectoral fin adductor.  The adductor superficialis originates at the cleithrum and  inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7]
synonym: "adductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7]
synonym: "superficial adductors" EXACT PLURAL []
xref: TAO:0000285
is_a: ZFA:0005268 ! adductor muscle
relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000563 ! pectoral fin musculature
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000286
name: superficial lateralis
namespace: zebrafish_anatomy
def: "Slow twitch muscle derived from the lateral wedge-shaped strip of slow muscle cells originally positioned at the lateral end of the horizontal myoseptum. In the adult it is a thin band of  muscle positioned mediolaterally above the epaxial-hypaxial junction,  posteriorly the superficial lateralis elaborates into the superficial lateralis dorsalis and superficial lateralis ventralis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080519-4, ZFIN:ZDB-PUB-171118-8, ZFIN:ZDB-PUB-961219-12]
synonym: "lateral superficial muscle" RELATED []
synonym: "lateralis superficialis" EXACT []
xref: TAO:0000286
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000287
name: superior caudal dorsal flexor
namespace: zebrafish_anatomy
def: "Paired, deep caudal fin muscles that originate from the 30th vertebra and extend toward the dorsal base of the caudal fin where they insert broadly on fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "CDS" RELATED []
synonym: "flexor caudalis dorsalis superioris" EXACT []
synonym: "superior dorsal flexor" EXACT []
xref: TAO:0000287
is_a: ZFA:0005271 ! flexor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005819 ! deep caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000288
name: supracarinalis
namespace: zebrafish_anatomy
xref: TAO:0000288
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000289
name: supramaxillae
namespace: zebrafish_anatomy
comment: Supramaxillary bones are absent from D. rerio, as in other ostariophysans (Fink and Fink, '81)
is_obsolete: true

[Term]
id: ZFA:0000290
name: sphenoid region
namespace: zebrafish_anatomy
def: "Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000290
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000291
name: medial octavolateralis nucleus
namespace: zebrafish_anatomy
def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "intermediate octavolateral nucleus" EXACT []
synonym: "medial octavolateralis nuclei" EXACT PLURAL []
synonym: "MON" RELATED []
xref: TAO:0000291
is_a: ZFA:0000381 ! lateral line sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000292
name: surface structure
namespace: zebrafish_anatomy
def: "Organism subdivision which is the collection of anatomical structures on the body surface." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "surface structures" EXACT PLURAL []
xref: TAO:0000292
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000293
name: synencephalon
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000293
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000294
name: torus lateralis
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the caudal tuberculum.  In goldfish the lateral torus is exclusively involved with gustatory and general visceral systems." [GOC:cvs, GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, PMID:9552123]
synonym: "lateral torus" EXACT []
xref: TAO:0000294
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000295
name: trigeminal ganglion
namespace: zebrafish_anatomy
def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "5th ganglion" EXACT []
synonym: "fifth ganglion" EXACT []
synonym: "gV" EXACT []
synonym: "trigeminal ganglia" EXACT PLURAL []
xref: TAO:0000295
is_a: ZFA:0000013 ! cranial ganglion
relationship: develops_from ZFA:0000080 ! trigeminal neural crest
relationship: develops_from ZFA:0000162 ! trigeminal placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000296
name: uncrossed tecto-bulbar tract
namespace: zebrafish_anatomy
xref: TAO:0000296
is_a: ZFA:0000446 ! tecto-bulbar tract
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000297
name: vagal lobe
namespace: zebrafish_anatomy
def: "The multi-tissue,  vagal lobe is a large, paired brain stem structure flanking the unpaired facial lobe laterally.  The vagal lobe contains motor and gustatory neurons. While some degree of histological segregation is apparent within the vagal lobe, a clear lamination, as seen in goldfish or carp is absent." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280]
synonym: "LX" EXACT [ZFIN:ZDB-PUB-961014-1280]
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000298
name: vent
namespace: zebrafish_anatomy
def: "Is a surface structure and is the external opening of the cloaca." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "cloacal opening" EXACT [ZFIN:ZDB-PUB-110602-26]
synonym: "cloacal vent" EXACT []
xref: TAO:0000298
is_a: ZFA:0000292 ! surface structure
relationship: develops_from ZFA:0000066 ! proctodeum
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005781 ! cloaca
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000299
name: ventral entopeduncular nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
comment: The GAD67-positive (dorsal) entopeduncular\nnucleus (EN= former ENd) appears to be anatomically\nseparate from the GAD67-negative bed nucleus of the\nstria medullaris (BNSM), which was formerly called the ventral\npart of the entopeduncular nucleus (ENv). ZDB-PUB-090814-14.
synonym: "endopeduncular nucleus, ventral part" EXACT []
synonym: "entopeduncular nucleus, ventral part" EXACT []
synonym: "ENv" EXACT []
synonym: "nucleus entopeduncularis, pars ventralis" EXACT []
synonym: "ventral entopeduncular nucleus V" EXACT []
xref: TAO:0000299
is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon
relationship: develops_from ZFA:0005910 ! presumptive ventral entopeduncular nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000300
name: ventral hypohyal bone
namespace: zebrafish_anatomy
def: "The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "lower hypohyal" EXACT []
synonym: "ventrohyal" EXACT []
xref: TAO:0000300
is_a: ZFA:0001381 ! hypohyal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005458 ! dorsal hypohyal-ventral hypohyal joint
relationship: overlaps ZFA:0005466 ! ceratohyal-ventral hypohyal joint
relationship: overlaps ZFA:0005476 ! inter-ventral hypohyal joint
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000301
name: medial rectus
namespace: zebrafish_anatomy
def: "Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction.  The medial rectus lies in the same anatomical plane as the lateral rectus.  The medial rectus is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9]
comment: Mature form at Hatching:Long-pec.
synonym: "medial recti" EXACT PLURAL []
xref: TAO:0000301
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000511 ! extraocular musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000302
name: ventral habenular nucleus
namespace: zebrafish_anatomy
def: "Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The ventral habenular nuclei are paired and symmetrical, each have a conical shape defined by a wide rostral end, occupying the entire anterior region of the habenula, and a narrow caudal end. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe.  The ventral habenular nucleus is homolog mammalian lateral habenular nucleus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-100202-7, ZFIN:ZDB-PUB-120709-5]
xref: TAO:0000302
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000213 ! habenula
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000303
name: female organism
namespace: zebrafish_anatomy
def: "Gonochoristic organism that can produce female gametes." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000028
xref: TAO:0000303
is_a: ZFA:0001094 ! whole organism
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000304
name: ventral telencephalon
namespace: zebrafish_anatomy
def: "Brain structure which is the ventral part of the telencephalon and is consists of periventricular nuclei surrounding the unpaired median ventricle and those which have migrated away from the ependyma. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali" EXACT []
synonym: "subpallium" EXACT []
xref: TAO:0000304
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000305
name: ventral sulcus
namespace: zebrafish_anatomy
def: "Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus." [GOC:mh, http://en.wikipedia.org/wiki/Hypothalamic_sulcus, ORCiD:0000-0001-9114-8737]
synonym: "hypothalamic sulcus" RELATED []
xref: TAO:0000305
is_a: ZFA:0001690 ! groove
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000032 ! hypothalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000306
name: ventrolateral thalamic nucleus
namespace: zebrafish_anatomy
xref: TAO:0000306
is_a: ZFA:0005576 ! ventral thalamus nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000458 ! ventral thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000307
name: vestibulolateralis lobe
namespace: zebrafish_anatomy
def: "Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000307
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000308
name: prevomer
namespace: zebrafish_anatomy
def: "A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "vomer" EXACT [ZFIN:ZDB-PUB-961014-192]
xref: TAO:0000308
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0005509 ! palate
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000309
name: external yolk syncytial layer
namespace: zebrafish_anatomy
def: "The portion of the YSL that is outside of the blastoderm margin during epiboly." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000309
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000088 ! yolk syncytial layer
relationship: start ZFS:0000013 ! blastula:oblong

[Term]
id: ZFA:0000310
name: cranial nerve VI
namespace: zebrafish_anatomy
def: "Cranial nerve which exits the medulla oblongata and controls the lateral movement of the eye. The caudal and rostral roots fuse together and course rostrally once they are outside the brainstem. The abducens nerve innervates the lateral rectus extraocular muscle." [GOC:mh, GOC:ymb, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-131119-12]
synonym: "abducens nerve" EXACT []
synonym: "CN-VI" EXACT []
synonym: "nervus abducens" EXACT []
xref: TAO:0000310
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000311
name: adductor mandibulae complex
namespace: zebrafish_anatomy
def: "Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070330-4]
xref: TAO:0000311
is_a: ZFA:0005268 ! adductor muscle
relationship: develops_from ZFA:0007049 ! adductor mandibulae
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0000312
name: mesencephalic nucleus of trigeminal nerve
namespace: zebrafish_anatomy
def: "Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum  that contains large pyriform neurons.  The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280]
synonym: "mesencephalic nuclei of trigeminal nerves" EXACT PLURAL []
xref: TAO:0000312
is_a: ZFA:0000433 ! sensory trigeminal nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000313
name: anal inclinator
namespace: zebrafish_anatomy
def: "Series of paired muscles that have a distal attachment at the lateral  base of each ray and a proximal attachment  to the hypaxialis.  The left and right inclinators attach the integument and trunk muscles to the base of each ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "anal inclinators" EXACT PLURAL []
synonym: "inclinatores anales" EXACT [ZFIN:ZDB-PUB-171118-8]
xref: TAO:0000313
is_a: ZFA:0005276 ! inclinator muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001154 ! anal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000314
name: anterior semicircular canal
namespace: zebrafish_anatomy
alt_id: ZFA:0000675
def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear.  The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "anterior semicircular canals" EXACT PLURAL []
synonym: "anterior semicircular duct" EXACT []
synonym: "rostral vertical semicircular canal" EXACT []
xref: TAO:0000314
is_a: ZFA:0000431 ! semicircular canal
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000315
name: asteriscus
namespace: zebrafish_anatomy
def: "Otolith part of lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020403-4]
synonym: "lagenar otolith" EXACT []
synonym: "lagenolith" EXACT []
xref: TAO:0000315
is_a: ZFA:0001617 ! otolith
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000374 ! lagena
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000316
name: basihyal bone
namespace: zebrafish_anatomy
def: "Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "basihyal" RELATED []
synonym: "basihyoid" EXACT []
synonym: "glossohyal" EXACT []
xref: TAO:0000316
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001510 ! basihyal cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000317
name: postcranial axial skeleton
namespace: zebrafish_anatomy
def: "The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "axial skeleton" EXACT []
xref: TAO:0000317
is_a: ZFA:0000434 ! skeletal system
relationship: develops_from ZFA:0001080 ! sclerotome
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000318
name: brainstem and spinal white matter
namespace: zebrafish_anatomy
def: "CNS white matter that is part of the brain stem or spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "brain stem and spinal tract/commissure" EXACT []
synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL []
xref: TAO:0000318
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001707 ! brainstem
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000319
name: branchiostegal membrane
namespace: zebrafish_anatomy
def: "The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber." [http://www.fishbase.org/glossary/Glossary.php?q=branchiostegal+membrane]
synonym: "branchiostegal membranes" EXACT PLURAL []
xref: TAO:0000319
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000354 ! gill
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000320
name: caudal commissure
namespace: zebrafish_anatomy
def: "Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "PC" RELATED []
synonym: "posterior commissure" EXACT []
xref: TAO:0000320
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000293 ! synencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000321
name: caudal levator
namespace: zebrafish_anatomy
synonym: "caudal levators" EXACT PLURAL []
xref: TAO:0000321
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000322
name: caudal octaval nucleus
namespace: zebrafish_anatomy
synonym: "caudal octaval nuclei" EXACT PLURAL []
xref: TAO:0000322
is_a: ZFA:0000401 ! octaval nerve sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000323
name: mesethmoid bone
namespace: zebrafish_anatomy
def: "Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ethmoid bone" EXACT []
xref: TAO:0000323
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001321 ! neurocranial trabecula
relationship: develops_from ZFA:0001405 ! ethmoid cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000324
name: caudal periventricular hypothalamus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "caudal zone of periventricular hypothalamus" EXACT []
synonym: "nucleus periventricularis hypothalami, zona caudalis" EXACT []
xref: TAO:0000324
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000634 ! caudal hypothalamic zone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000325
name: caudal thalamic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the caudal tuberculum.  It is targeted by ascending fibers originating from the secondary gustatory/ visceral complex." [GOC:cvs, GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-160628-14]
synonym: "posterior thalamic nucleus" EXACT []
xref: TAO:0000325
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000326
name: caudal vertebra
namespace: zebrafish_anatomy
def: "Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "caudal vertebrae" EXACT PLURAL []
xref: TAO:0000326
is_a: ZFA:0001189 ! vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000327
name: central zone of the optic tectum
namespace: zebrafish_anatomy
xref: TAO:0000327
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000445 ! optic tectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000328
name: cephalic musculature
namespace: zebrafish_anatomy
def: "Musculature system of the pharyngeal and head regions." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "head muscles" RELATED []
xref: TAO:0000328
is_a: ZFA:0000548 ! musculature system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000329
name: chorion
namespace: zebrafish_anatomy
def: "The egg shell." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000329
is_a: ZFA:0000020 ! extraembryonic structure
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000330
name: cloacal chamber
namespace: zebrafish_anatomy
def: "Space proximal to the urogenital pore where the pronephric duct, intestine and the oviduct or sperm duct  empties." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "cloaca lumen" EXACT []
xref: TAO:0000330
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005781 ! cloaca
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000331
name: commissure infima of Haller
namespace: zebrafish_anatomy
synonym: "commissura infima Halleri" EXACT []
synonym: "commissura infima of Haller" EXACT []
xref: TAO:0000331
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000332
name: coracoid
namespace: zebrafish_anatomy
def: "Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum.  The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired." [TAO:GA_TG]
synonym: "coracoids" EXACT PLURAL []
synonym: "scapulocoracoid" RELATED []
xref: TAO:0000332
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001455 ! scapulocoracoid
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005470 ! inter-coracoid joint
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000333
name: mesovarium
namespace: zebrafish_anatomy
xref: TAO:0000333
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000403 ! ovary
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000334
name: corpus mamillare
namespace: zebrafish_anatomy
def: "Brain structure which is located ventrolaterally to the caudal preglomerular nucleus and in the dorsomedial aspect of the caudal protrusion of the inferior lobe of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "mammillary body" EXACT []
xref: TAO:0000334
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000335
name: crossed tecto-bulbar tract
namespace: zebrafish_anatomy
synonym: "tractus tectobulbaris cruciatus" EXACT []
xref: TAO:0000335
is_a: ZFA:0000446 ! tecto-bulbar tract
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000336
name: hypural arches
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000364

[Term]
id: ZFA:0000337
name: dermopalatine
namespace: zebrafish_anatomy
comment: Doesn't seem to exist in zebrafish.
is_obsolete: true

[Term]
id: ZFA:0000338
name: diencephalic white matter
namespace: zebrafish_anatomy
def: "CNS white matter that is part of the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "diencephalic tract/commissure" EXACT []
xref: TAO:0000338
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000339
name: digestive system
namespace: zebrafish_anatomy
def: "Anatomical system that processes ingested substances." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000339
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000340
name: dorsal entopeduncular nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "ENd" EXACT []
synonym: "endopeduncular nucleus, dorsal part" EXACT []
synonym: "entopeduncular nucleus, dorsal part" EXACT []
synonym: "nucleus entopeduncularis, pars dorsalis" EXACT []
xref: TAO:0000340
is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000341
name: inferior caudal dorsal flexor
namespace: zebrafish_anatomy
def: "Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "CDI" RELATED []
synonym: "dorsal flexor" RELATED []
synonym: "dorsal flexors" EXACT PLURAL []
synonym: "flexor caudalis dorsalis inferioris" EXACT []
xref: TAO:0000341
is_a: ZFA:0005271 ! flexor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005819 ! deep caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000342
name: dorsal inclinator
namespace: zebrafish_anatomy
def: "Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle.  The inclinator muscles bend the fin sideways.  There is one dorsal inclinator for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "dorsal inclinators" EXACT PLURAL []
synonym: "inclinator dorsalis" EXACT []
xref: TAO:0000342
is_a: ZFA:0005276 ! inclinator muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000648 ! dorsal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000343
name: dorsal nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali, nucleus dorsalis" EXACT []
synonym: "dorsal division of ventral telencephalic area" RELATED []
synonym: "dorsal nucleus of V" EXACT []
synonym: "Vd" RELATED [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000343
is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000344
name: middle lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva positioned posterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "middle lateral lines" EXACT PLURAL []
xref: TAO:0000344
is_a: ZFA:0001469 ! lateral line
relationship: develops_from ZFA:0005118 ! middle lateral line primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: part_of ZFA:0005114 ! middle lateral line system
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0000345
name: dorsal rectus
namespace: zebrafish_anatomy
def: "Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve.  The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9]
comment: Mature form at Larval:Protruding-mouth.
synonym: "dorsal recti" EXACT PLURAL []
synonym: "superior rectus" EXACT [ZFIN:ZDB-PUB-110512-18]
xref: TAO:0000345
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000511 ! extraocular musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000346
name: dorsal tegmental nucleus
namespace: zebrafish_anatomy
def: "Tegmental nucleus that is immediately adjacent to the nucleus lateralis valvulae (NLV).  This nucleus is sometimes considered part of the NLV but the cells are more densely packed.  The nucleus extends rostrally into the mesencephalon." [ZFIN:ZDB-PUB-961014-1280]
synonym: "DTN" RELATED []
synonym: "nucleus tegmentalis dorsalis" EXACT []
xref: TAO:0000346
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000347
name: dorsal hypothalamic zone
namespace: zebrafish_anatomy
def: "Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000347
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0006000 ! intermediate hypothalamus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000032 ! hypothalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000348
name: duodenum
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0000349
name: epaxialis
namespace: zebrafish_anatomy
def: "Skeletal muscle that is the dorsal-most component of the body musculature. The anterior region attaches to the back of the cranial vault and the dorsal region of the pectoral girdle. The epaxialis is bound to the skin by fibrous connective tissue and internally it inserts over the dorsal portion of the vertebral centra and fin pterygiophores and the neural spines. Posteriorly the epaxialis overlies the modified muscle of the caudal fin and inserts onto the dorsal ray bases of the fin. The anterior epaxial plays a role in feeding and the posterior region is central to locomotion." [GOC:cvs, ISBN:0125296509, ORCiD:0000-0002-2244-7917]
xref: TAO:0000349
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000350
name: epipleural
namespace: zebrafish_anatomy
def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "epipleurals" EXACT PLURAL []
xref: TAO:0000350
is_a: ZFA:0000526 ! intermuscular bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000351
name: olfactory region
namespace: zebrafish_anatomy
def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ethmoid region" EXACT []
xref: TAO:0000351
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000352
name: external cellular layer
namespace: zebrafish_anatomy
def: "Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "stratum cellulare externum bulbi olfactorii" EXACT []
xref: TAO:0000352
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000402 ! olfactory bulb
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000353
name: fasciculus retroflexus
namespace: zebrafish_anatomy
def: "Paired fasciculus that connects the habenula to the interpeduncular nucleus.  In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-010601-11]
synonym: "fasciculus retroflexi" EXACT PLURAL []
synonym: "habenulo-interpeduncular tract" EXACT []
synonym: "habenulointerpeduncular tract" EXACT []
synonym: "tractus habenulo-interpeduncularis" EXACT []
xref: TAO:0000353
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000354
name: gill
namespace: zebrafish_anatomy
def: "Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water." [http:http\://www.briancoad.com/Dictionary/DicPics/gill.htm]
synonym: "gills" EXACT PLURAL []
xref: TAO:0000354
is_a: ZFA:0000496 ! compound organ
relationship: develops_from ZFA:0001107 ! internal gill bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000272 ! respiratory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000355
name: roof plate midbrain region
namespace: zebrafish_anatomy
def: "Roof plate that is part of the midbrain." [GOC:CVS, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000355
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0007058 ! roof plate
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000356
name: gill raker
namespace: zebrafish_anatomy
def: "Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7.  They support the gills.  The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-081008-12]
synonym: "gill rakers" EXACT PLURAL []
xref: TAO:0000356
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000357
name: glomerular layer
namespace: zebrafish_anatomy
def: "Multi-tissue structure which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "stratum glomerulosum bulbi olfactorii" EXACT []
xref: TAO:0000357
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000402 ! olfactory bulb
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000358
name: granular layer corpus cerebelli
namespace: zebrafish_anatomy
def: "Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000358
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000188 ! corpus cerebelli
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000359
name: habenular commissure
namespace: zebrafish_anatomy
synonym: "commissura habenularum" EXACT []
xref: TAO:0000359
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000360
name: heart tube
namespace: zebrafish_anatomy
def: "Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation." [ZFIN:ZDB-PUB-010219-2]
xref: TAO:0000360
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0000149 ! primitive heart tube
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: part_of ZFA:0007115 ! pericardial region
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000362
name: hypaxialis
namespace: zebrafish_anatomy
def: "The hypaxialis consists of that part of the body musculature lying ventral to the midlateral horizontal septum." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-151106-17]
xref: TAO:0000362
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000363
name: hypobranchial bone
namespace: zebrafish_anatomy
def: "Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypobranchial bones" EXACT PLURAL []
xref: TAO:0000363
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001522 ! hypobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000364
name: hypural
namespace: zebrafish_anatomy
def: "Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length)." [ZFIN:ZDB-PUB-011008-1]
synonym: "hyp" EXACT []
synonym: "hypuralia" EXACT []
synonym: "hypurals" EXACT PLURAL []
xref: TAO:0000364
is_a: ZFA:0000859 ! specialized hemal arch and spine
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000365
name: nasal bone
namespace: zebrafish_anatomy
def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish." [ZFIN:ZDB-PUB-961014-192]
synonym: "nasal bones" EXACT PLURAL []
xref: TAO:0000365
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000366
name: inferior raphe nucleus
namespace: zebrafish_anatomy
def: "Hindbrain nucleus that provides descending innervation to the brainstem and spinal cord.  Early in development the inferior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections inferior raphe nucleus are restricted to posterior." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081114-19]
synonym: "posterior raphe nucleus" EXACT []
xref: TAO:0000366
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001429 ! raphe nucleus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000367
name: infraorbital bridge
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001410

[Term]
id: ZFA:0000368
name: integument
namespace: zebrafish_anatomy
def: "The outer protective barrier that separates the animal from its aquatic environment." [ZFIN:ZDB-PUB-040726-12]
synonym: "skin" EXACT []
xref: TAO:0000368
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000369
name: intermandibularis
namespace: zebrafish_anatomy
def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12]
xref: TAO:0000369
is_a: ZFA:0000236 ! mandibular muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000370
name: intermediate thalamic nucleus
namespace: zebrafish_anatomy
synonym: "intermediate thalamic nuclei" EXACT PLURAL []
xref: TAO:0000370
is_a: ZFA:0005576 ! ventral thalamus nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000458 ! ventral thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000371
name: internal pharyngoclavicularis
namespace: zebrafish_anatomy
synonym: "internal pharyngoclavicularae" EXACT PLURAL []
xref: TAO:0000371
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000372
name: interpeduncular nucleus medulla oblongata
namespace: zebrafish_anatomy
xref: TAO:0000372
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000373
name: juvenile
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFS:0000042
consider: ZFS:0000043

[Term]
id: ZFA:0000374
name: lagena
namespace: zebrafish_anatomy
def: "Otolith organ comprised of the macula lagena and asteriscus.  The lagena is part of the pars inferior. The lagena functions in the detection of sound." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lagenas" EXACT PLURAL []
xref: TAO:0000374
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000559 ! otolith organ
relationship: part_of ZFA:0005410 ! pars inferior ear
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000375
name: last preural centrum
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000557
consider: ZFA:0000586
consider: ZFA:0001583

[Term]
id: ZFA:0000376
name: infraorbital
namespace: zebrafish_anatomy
alt_id: ZFA:0000489
def: "Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000376
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001410 ! orbital region
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000379
name: lateral forebrain bundle diencephalon
namespace: zebrafish_anatomy
def: "Portion of the lateral forebrain bundle that lies in the diencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "lateral forebrain bundles diencephalon" EXACT PLURAL []
xref: TAO:0000379
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007012 ! lateral forebrain bundle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000380
name: lateral lemniscus nucleus
namespace: zebrafish_anatomy
synonym: "lateral lemniscus nuclei" EXACT PLURAL []
xref: TAO:0000380
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000381
name: lateral line sensory nucleus
namespace: zebrafish_anatomy
synonym: "lateral line sensory nuclei" EXACT PLURAL []
xref: TAO:0000381
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000382
name: acellular anatomical structure
namespace: zebrafish_anatomy
def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "acellular anatomical structures" EXACT PLURAL []
xref: CARO:0000040
xref: TAO:0000382
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0000383
name: lateral rectus
namespace: zebrafish_anatomy
def: "Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal .  The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve.  The unsegmented paraxial head mesoderm contributes to the lateral rectus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9]
comment: Mature form at Hatching:Pec-fin.
synonym: "lateral recti" EXACT PLURAL []
synonym: "posterior rectus" EXACT [ZFIN:ZDB-PUB-970121-6]
xref: TAO:0000383
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000511 ! extraocular musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000384
name: levator arcus palatini
namespace: zebrafish_anatomy
def: "Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2]
synonym: "levators arcus palatini" EXACT PLURAL []
xref: TAO:0000384
is_a: ZFA:0000236 ! mandibular muscle
relationship: develops_from ZFA:0007050 ! constrictor dorsalis
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000385
name: lymphatic system
namespace: zebrafish_anatomy
def: "The lymphatic system consists of blind-ended vessels, fluid and macromolecules collected  from interstitial tissue space that serve as a conduit for the development and transport of lymphoid cells." [ZFIN:ZDB-PUB-130322-28]
xref: TAO:0000385
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000386
name: macula
namespace: zebrafish_anatomy
def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "maculae" EXACT PLURAL []
synonym: "sensory macula" EXACT []
synonym: "sensory patch" EXACT []
xref: TAO:0000386
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000217 ! inner ear
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000387
name: motor nucleus of vagal nerve
namespace: zebrafish_anatomy
comment: This term split from vagal lobe.  Merged before 1996.
synonym: "motor nucleus of X" EXACT []
synonym: "motor nucleus X" EXACT []
synonym: "nucleus motorius of nervi vagi" EXACT []
synonym: "nX" EXACT []
synonym: "vagal lobe" RELATED []
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000297 ! vagal lobe
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000388
name: medial caudal lobe
namespace: zebrafish_anatomy
def: "Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "caudal lobe of cerebellum" EXACT []
synonym: "lobus caudalis cerebelli" EXACT []
xref: TAO:0000388
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000307 ! vestibulolateralis lobe
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000389
name: medial funicular nucleus medulla oblongata
namespace: zebrafish_anatomy
xref: TAO:0000389
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000390
name: medial preglomerular nucleus
namespace: zebrafish_anatomy
def: "Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "medial preglomerular nuclei" EXACT PLURAL []
xref: TAO:0000390
is_a: ZFA:0001662 ! preglomerular nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000391
name: medial zone of dorsal telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area dorsalis telencephali, zona medialis" EXACT []
synonym: "Dm" EXACT [ZFIN:ZDB-PUB-150226-6]
synonym: "medial zone of D" EXACT []
synonym: "medial zone of dorsal telencephalic area" EXACT []
xref: TAO:0000391
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000392
name: median tuberal portion
namespace: zebrafish_anatomy
def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000392
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000032 ! hypothalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000393
name: mesenchyme
namespace: zebrafish_anatomy
def: "A mesh-like cell arrangement, less compact than an epithelium." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000393
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000394
name: molecular layer corpus cerebelli
namespace: zebrafish_anatomy
def: "Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000394
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000188 ! corpus cerebelli
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000395
name: muscle pioneer somite 2
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 2" EXACT PLURAL []
xref: TAO:0000395
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000728 ! somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000396
name: nervous system
namespace: zebrafish_anatomy
def: "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000396
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000397
name: nucleus subglomerulosis
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the caudal tuberculum.  In trout the nucleus subglomerulosis receives gustatory information." [GOC:cvs, GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, PMID:11923003]
xref: TAO:0000397
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000398
name: nucleus isthmi
namespace: zebrafish_anatomy
def: "The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100601-20]
xref: TAO:0000398
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000399
name: secondary gustatory nucleus trigeminal nucleus
namespace: zebrafish_anatomy
def: "Nucleus that lies rostral to the isthmic primary nucleus." [ZFIN:ZDB-PUB-961014-1280]
synonym: "secondary gustatory nucleus trigeminal nuclei" EXACT PLURAL []
xref: TAO:0000399
is_a: ZFA:0000433 ! sensory trigeminal nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000400
name: occipital lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva positioned dorsal to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "supratemporal lateral line" EXACT []
xref: TAO:0000400
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000401
name: octaval nerve sensory nucleus
namespace: zebrafish_anatomy
synonym: "cranial nerve VIII sensory nucleus" EXACT []
synonym: "octaval nerve sensory nuclei" EXACT PLURAL []
xref: TAO:0000401
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000402
name: olfactory bulb
namespace: zebrafish_anatomy
def: "Brain structure which is the paired anteriormost part of the telencephalon and are connected to the telencephalon by two tracts carrying secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain.  The olfactory bulb is a paired structure." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "bulbus olfactorius" EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "olfactory lobe" EXACT []
xref: TAO:0000402
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: part_of ZFA:0001149 ! olfactory system
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000403
name: ovary
namespace: zebrafish_anatomy
def: "Female reproductive organ.  The ovary is a bilobed cavitated organ located ventral to the swim bladder." [GOC:cvs, GOC:mh, ISBN:0199638098, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917]
synonym: "ovaries" EXACT PLURAL []
xref: TAO:0000403
is_a: ZFA:0000413 ! gonad
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000303 ! female organism
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000404
name: paracommissural nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000404
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000293 ! synencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000405
name: cranial nerve III
namespace: zebrafish_anatomy
def: "Cranial nerve which innervates muscles of the ocular motor system. The oculomotor nerve innervates the inferior oblique, inferior rectus, medial rectus and superior rectus extraocular muscles." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-131119-12]
synonym: "CN-III" EXACT []
synonym: "occulomotor" EXACT []
synonym: "oculomotor nerve" EXACT []
xref: TAO:0000405
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000406
name: parvocellular superficial pretectal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL []
xref: TAO:0000406
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000687 ! superficial pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000407
name: pectoral girdle
namespace: zebrafish_anatomy
def: "Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones." [TAO:WD]
synonym: "pectoral girdles" EXACT PLURAL []
xref: TAO:0000407
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000943 ! pectoral fin skeleton
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000408
name: periventricular nucleus of caudal tuberculum
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "periventricular nucleus of posterior tuberculum" EXACT []
xref: TAO:0000408
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000410
name: postcleithrum
namespace: zebrafish_anatomy
def: "Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "postcleithra" EXACT PLURAL []
xref: TAO:0000410
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000411
name: posterior crista primordium
namespace: zebrafish_anatomy
def: "Is an otic epithelium that will mature into the posterior crista." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "posterior crista primordia" EXACT PLURAL []
xref: TAO:0000411
is_a: ZFA:0007068 ! otic epithelium
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0000262 ! posterior semicircular canal
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000412
name: otic vesicle posterior protrusion
namespace: zebrafish_anatomy
def: "Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11]
synonym: "posterior semicircular canal primordia" RELATED PLURAL []
synonym: "posterior semicircular canal primordium" RELATED []
xref: TAO:0000412
is_a: ZFA:0001715 ! otic vesicle protrusion
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000413
name: gonad
namespace: zebrafish_anatomy
def: "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "gonads" EXACT PLURAL []
synonym: "mature gonad" RELATED []
xref: TAO:0000413
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0005272 ! immature gonad
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000632 ! reproductive system
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000414
name: presumptive cephalic mesoderm
namespace: zebrafish_anatomy
def: "Embryonic structure that is fated to become cephalic mesoderm." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000414
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0000041 ! mesoderm
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0000415
name: esophageal sphincter
namespace: zebrafish_anatomy
def: "Sphincter at the junction of the esophagus and pneumatic duct." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "oesophagial sphincter" EXACT []
xref: TAO:0000415
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000416
name: presumptive endoderm
namespace: zebrafish_anatomy
def: "Presumptive structure fated to become endoderm. Determined by fate mapping." [ZFIN:ZDB-PUB-961014-608]
xref: TAO:0000416
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000019 ! gastrula:shield
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000417
name: presumptive spinal cord
namespace: zebrafish_anatomy
def: "Embryonic structure part of the posterior presumptive neural plate that is fated to become the spinal cord." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "presumptive spinal cord neural keel" EXACT []
synonym: "presumptive spinal cord neural plate" EXACT []
synonym: "presumptive spinal cord neural rod" EXACT []
xref: TAO:0000417
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0007015 ! posterior presumptive neural plate
relationship: start ZFS:0000019 ! gastrula:shield

[Term]
id: ZFA:0000418
name: pretectum
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the dorsal part of the diencephalon, caudal to the telencephalon, rostral to the midbrain optic tectum; the major sensory input to the pretectum is visual. From The Laboratory Fish." [GOC:mh, ISBN:0125296509, ORCiD:0000-0001-9114-8737]
xref: TAO:0000418
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000419
name: pterosphenoid
namespace: zebrafish_anatomy
def: "Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pterosphenoids" EXACT PLURAL []
xref: TAO:0000419
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001515 ! taenia marginalis posterior
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005482 ! prootic-pterosphenoid joint
relationship: overlaps ZFA:0005560 ! parasphenoid-basioccipital joint
relationship: part_of ZFA:0000290 ! sphenoid region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000420
name: renal artery
namespace: zebrafish_anatomy
synonym: "renal arteries" EXACT PLURAL []
xref: TAO:0000420
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000421
name: reticular formation
namespace: zebrafish_anatomy
def: "Reticular formation is a complex network of neurons and diffuse nuclei that extends from the spinal cord centrally along the length of the brain to the mesencephalon. It s a dense, almost impenetrable network of seemingly random scattered nerve cells.  The reticular formation integrates sensory inputs." [ISBN:0865777101]
xref: TAO:0000421
is_a: ZFA:0001512 ! anatomical group
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000422
name: retroarticular
namespace: zebrafish_anatomy
def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "retroarticulars" EXACT PLURAL []
xref: TAO:0000422
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0005904 ! retroarticular  process
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005618 ! anguloarticular-retroarticular joint
relationship: part_of ZFA:0001273 ! ventral mandibular arch
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0000423
name: anterior cardinal vein
namespace: zebrafish_anatomy
def: "Vein that joins with the posterior cardinal vein to form the common cardinal vein.  The anterior cardinal vein (ACV) connects to the primordial hindbrain channel at early stages. At later stages the posterior cerebral vein (PCeV) and the pectoral vein (PV) drain into ACV.  The rostral portion of the ACV connects to the primary head sinus (PHS) at 2.5dpf, the PHS is sometimes considered an extension of the ACV." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "ACV" EXACT []
synonym: "rostral cardinal vein" EXACT []
xref: TAO:0000423
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000096 ! cardinal system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000424
name: opercular lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element.  A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "opercular lateral lines" EXACT PLURAL []
xref: TAO:0000424
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000425
name: anterior lateral line nerve
namespace: zebrafish_anatomy
def: "Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain." [GOC:ymb, ISBN:3764351209, ORCiD:0000-0002-9900-7880]
synonym: "ALLn" EXACT []
synonym: "nervi lineae lateralis anterioris" EXACT []
synonym: "rostral lateral line nerve" EXACT []
xref: TAO:0000425
is_a: ZFA:0000641 ! cranial nerve
is_a: ZFA:0001479 ! lateral line nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001468 ! anterior lateral line system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000426
name: rostral parvocellular preoptic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "anterior parvocellular preoptic nucleus" EXACT []
synonym: "rostral parvocellular preoptic nuclei" EXACT PLURAL []
xref: TAO:0000426
is_a: ZFA:0001680 ! parvocellular preoptic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000470 ! preoptic area
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000427
name: rostral thalamic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located in the anterior portion of the dorsal thalamus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anterior thalamic nucleus" EXACT []
synonym: "nucleus anterior thalami" EXACT []
xref: TAO:0000427
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000653 ! dorsal thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000428
name: saccule
namespace: zebrafish_anatomy
def: "Otolith organ comprised of the macula saccule and sagitta. The lagena is part of the pars inferior. The saccule functions in the detection of sound and movement." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "sacculus" EXACT []
xref: TAO:0000428
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000559 ! otolith organ
relationship: part_of ZFA:0005410 ! pars inferior ear
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000429
name: scaphium
namespace: zebrafish_anatomy
def: "The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000429
is_a: ZFA:0001066 ! neural arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000461 ! Weberian ossicle
relationship: part_of ZFA:0001167 ! vertebra 1
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000430
name: secondary gustatory tract
namespace: zebrafish_anatomy
def: "White matter connecting the primary gustatory nuclei to  the secondary gustatory nucleus in the isthmus." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000430
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000431
name: semicircular canal
namespace: zebrafish_anatomy
def: "Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "scc" EXACT []
synonym: "semicircular canals" EXACT PLURAL []
synonym: "semicircular duct" EXACT []
xref: TAO:0000431
is_a: ZFA:0007114 ! anatomical conduit
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005409 ! pars superior ear
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000433
name: sensory trigeminal nucleus
namespace: zebrafish_anatomy
synonym: "NVs" RELATED []
synonym: "sensory trigeminal nuclei" EXACT PLURAL []
xref: TAO:0000433
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000434
name: skeletal system
namespace: zebrafish_anatomy
xref: TAO:0000434
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000435
name: cranial nerve II
namespace: zebrafish_anatomy
def: "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which the axons cross the midline and after which the structure is termed the optic tract." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "CN-II" EXACT []
synonym: "optic" EXACT []
synonym: "optic nerve" EXACT []
xref: TAO:0000435
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000338 ! diencephalic white matter
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000436
name: spleen
namespace: zebrafish_anatomy
def: "Organ that filters the blood removing defective blood cells.  The spleen is a dark red organ, located in the peritoneal cavity, adjacent to one of the liver lobes. The spleen consists of red pulp composed of erythrocytes and thrombocytes and white pulp, composed of macrophages, reticular cells and reticulin fibers." [ZFIN:ZDB-PUB-110609-55]
xref: TAO:0000436
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001159 ! immune system
relationship: part_of ZFA:0005023 ! hematopoietic system
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000437
name: stomach
namespace: zebrafish_anatomy
xref: TAO:0002121
is_obsolete: true
consider: ZFA:0001076

[Term]
id: ZFA:0000438
name: parhypural
namespace: zebrafish_anatomy
alt_id: ZFA:0000562
def: "Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the dorsal aorta passes." [ZFIN:ZDB-PUB-011008-1]
synonym: "parhyural" EXACT []
synonym: "phy" EXACT []
xref: TAO:0000438
is_a: ZFA:0000859 ! specialized hemal arch and spine
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000557 ! preural 1 vertebra
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0000439
name: superficial pelvic abductor
namespace: zebrafish_anatomy
def: "Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline.  At the midline the paired muscles contact each other.  These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "abductor superficialis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8]
synonym: "superficial pelvic abductors" EXACT PLURAL []
xref: TAO:0000439
is_a: ZFA:0005269 ! abductor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000258 ! pelvic fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000440
name: superior raphe nucleus
namespace: zebrafish_anatomy
def: "Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain.  Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus  restricted to anterior." [ZFIN:ZDB-PUB-081114-19]
comment: May be homologous to the dorsal raphe nucleus of human mouse and rat. ZDB-PUB-081008-18.
synonym: "anterior raphe nucleus" EXACT []
synonym: "dorsal raphe nucleus" RELATED []
xref: TAO:0000440
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001429 ! raphe nucleus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000441
name: suprachiasmatic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the preoptic area and is ventrolateral to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000441
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000470 ! preoptic area
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000442
name: supraneural
namespace: zebrafish_anatomy
def: "Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "sn" EXACT []
xref: TAO:0000442
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000317 ! postcranial axial skeleton
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000443
name: supraorbital lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva consisting of three neuromast positioned superior to the eye. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "supraorbital lateral lines" EXACT PLURAL []
synonym: "supraorbital line" EXACT [ZFIN:ZDB-PUB-000523-3]
xref: TAO:0000443
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0000444
name: suspensorium
namespace: zebrafish_anatomy
synonym: "hyopalatine" EXACT []
synonym: "suspensoria" EXACT []
xref: TAO:0000444
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001216 ! splanchnocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000445
name: optic tectum
namespace: zebrafish_anatomy
alt_id: ZFA:0001353
def: "Multi-tissue structure that is the dorsal part of the midbrain and develops from the alar plate and is the most complex layered structure in the zebrafish brain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal midbrain" EXACT []
synonym: "mesencephalic tectum" EXACT []
synonym: "tectal lobe" EXACT []
synonym: "tectum" EXACT [ZFIN:ZDB-PUB-961014-576]
synonym: "tectum opticum" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000445
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001357 ! alar plate midbrain region
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000446
name: tecto-bulbar tract
namespace: zebrafish_anatomy
xref: TAO:0000446
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000447
name: tela chorioidea
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus." [ISBN:0030223695, ISBN:0683014617]
synonym: "tela choroidea" RELATED []
xref: TAO:0000447
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001355 ! primitive meninx
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000448
name: tertiary gustatory nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000448
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000449
name: torus longitudinalis
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "longitudinal torus" EXACT []
synonym: "tori longitudinalis" EXACT PLURAL []
xref: TAO:0000449
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001357 ! alar plate midbrain region
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000450
name: trochlear motor nucleus
namespace: zebrafish_anatomy
synonym: "motor nucleus IV" EXACT []
synonym: "nIV" EXACT []
xref: TAO:0000450
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000451
name: upper oral valve
namespace: zebrafish_anatomy
def: "Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity.  The oral valves control the flow of water into the mouth during routine respiration." [ZFIN:ZDB-PUB-060921-12]
synonym: "breathing valve" RELATED []
synonym: "buccal valve" RELATED []
synonym: "maxillary valve" EXACT []
synonym: "upper internal lip" RELATED [ZFIN:ZDB-PUB-060921-12]
synonym: "upper semilunar valve" EXACT [ZFIN:ZDB-PUB-060921-12]
xref: TAO:0000451
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000590 ! oral region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000452
name: urohyal
namespace: zebrafish_anatomy
def: "The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000452
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005457 ! dorsal hypohyal-urohyal joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000453
name: cranial nerve X
namespace: zebrafish_anatomy
def: "Cranial nerve that innervates gill muscles.  Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches.  This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. The root is typically found at either rhombomere 7 or rhombomere 8." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-040109-20, ZFIN:ZDB-PUB-110727-5]
synonym: "CN-X" EXACT []
synonym: "vagal nerve" EXACT []
synonym: "vagus nerve" EXACT []
xref: TAO:0000453
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000454
name: ventral accessory optic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000454
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000183 ! central pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000455
name: superior caudal ventral flexor
namespace: zebrafish_anatomy
def: "Paired, deep caudal fin muscles that originate from the 30th vertebra then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "CVS" RELATED []
synonym: "flexor caudalis ventralis superioris" EXACT []
synonym: "ventral flexor" RELATED []
xref: TAO:0000455
is_a: ZFA:0005271 ! flexor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005819 ! deep caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000456
name: ventral nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali, nucleus ventralis" EXACT []
synonym: "ventral division of ventral telencephalic area" RELATED []
synonym: "ventral nucleus of V" EXACT []
xref: TAO:0000456
is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000457
name: ventral rectus
namespace: zebrafish_anatomy
def: "Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye.  The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9]
comment: Mature form at  Larval:Protruding-mouth.
synonym: "inferior rectus" EXACT [ZFIN:ZDB-PUB-110512-18]
synonym: "ventral recti" EXACT PLURAL []
xref: TAO:0000457
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000511 ! extraocular musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000458
name: ventral thalamus
namespace: zebrafish_anatomy
synonym: "prethalamus" EXACT [ZFIN:ZDB-PUB-060207-11]
xref: TAO:0000458
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001215 ! thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000459
name: ventromedial thalamic nucleus
namespace: zebrafish_anatomy
xref: TAO:0000459
is_a: ZFA:0005576 ! ventral thalamus nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000458 ! ventral thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000460
name: Mauthner axon
namespace: zebrafish_anatomy
comment: Part of axon so domain of GO celular component.
is_obsolete: true

[Term]
id: ZFA:0000461
name: Weberian ossicle
namespace: zebrafish_anatomy
def: "A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle." [ZFIN:ZDB-PUB-011008-1]
synonym: "Weberian ossicles" EXACT PLURAL []
xref: TAO:0000461
is_a: ZFA:0001491 ! solid compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001188 ! Weberian apparatus
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000462
name: abductor hyohyoid
namespace: zebrafish_anatomy
def: "Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart.  The abductor hyohyoid is responsible for expansion of the branchiostegal membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33]
synonym: "abductors hyohyoid" EXACT PLURAL []
synonym: "hyohyoideus abductor" EXACT []
xref: TAO:0000462
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007052 ! hyohyoideus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000463
name: branchial adductor
namespace: zebrafish_anatomy
synonym: "adductors" EXACT PLURAL []
xref: TAO:0000463
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000464
name: otic lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "otic lateral lines" EXACT PLURAL []
xref: TAO:0000464
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000465
name: adductor operculi
namespace: zebrafish_anatomy
def: "Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2]
synonym: "adductor opercula" EXACT []
synonym: "adductor operculae" EXACT PLURAL []
xref: TAO:0000465
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0000466
name: anal depressor
namespace: zebrafish_anatomy
def: "Series of  muscles that  have an anterior attachment  at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "anal depressors" EXACT PLURAL []
synonym: "depressores anales" RELATED [ZFIN:ZDB-PUB-171118-8]
xref: TAO:0000466
is_a: ZFA:0005270 ! depressor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001154 ! anal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000467
name: anguloarticular
namespace: zebrafish_anatomy
def: "Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-192]
synonym: "articular" EXACT []
xref: TAO:0000467
is_a: ZFA:0001590 ! dermal bone
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001644 ! articular cartilage
relationship: develops_from ZFA:0001645 ! angular bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005618 ! anguloarticular-retroarticular joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001273 ! ventral mandibular arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000468
name: anterior crista primordium
namespace: zebrafish_anatomy
def: "Is an otic epithelium that will mature into the anterior crista." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "anterior crista primordia" EXACT PLURAL []
xref: TAO:0000468
is_a: ZFA:0007068 ! otic epithelium
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0000314 ! anterior semicircular canal
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000469
name: otic vesicle anterior protrusion
namespace: zebrafish_anatomy
def: "Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11]
synonym: "anterior semicircular canal primordia" RELATED PLURAL []
synonym: "anterior semicircular canal primordium" RELATED []
xref: TAO:0000469
is_a: ZFA:0001715 ! otic vesicle protrusion
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000470
name: preoptic area
namespace: zebrafish_anatomy
def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, p. 34 in Atlas of Early Zebrafish Brain Development." [GOC:mh, ISBN:0444517383, ORCiD:0000-0001-9114-8737]
synonym: "area praeoptica" EXACT []
synonym: "area preoptica" EXACT []
synonym: "preoptic region" EXACT []
xref: TAO:0000470
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000471
name: atrium
namespace: zebrafish_anatomy
def: "Cavitated compound organ that receives inflow of deoxygenated blood and delivers it to a muscular cardiac ventricle. Valves are present to direct flow. There are only two chambers present in the fish heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020122-4]
xref: TAO:0000471
is_a: ZFA:0001490 ! cavitated compound organ
relationship: develops_from ZFA:0001718 ! presumptive atrium heart tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000472
name: basioccipital
namespace: zebrafish_anatomy
def: "Large median unpaired cartilage bone that contacts the exoccipital, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000472
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001423 ! parachordal cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005423 ! basioccipital-exoccipital joint
relationship: overlaps ZFA:0005560 ! parasphenoid-basioccipital joint
relationship: overlaps ZFA:0005613 ! basioccipital-prootic joint
relationship: part_of ZFA:0001414 ! occipital region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000473
name: trunk musculature
namespace: zebrafish_anatomy
def: "Muscle system in the trunk." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "body musculature" EXACT []
xref: TAO:0000473
is_a: ZFA:0000548 ! musculature system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000474
name: intercalar
namespace: zebrafish_anatomy
def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "opisthotic" EXACT []
xref: TAO:0000474
is_a: ZFA:0001636 ! membrane bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000189 ! otic region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000475
name: paraventricular organ
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells." [ZFIN:ZDB-PUB-001220-2]
synonym: "PVO" EXACT []
xref: TAO:0000475
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000476
name: branchiostegal ray
namespace: zebrafish_anatomy
def: "Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "branchiostegal rays" EXACT PLURAL []
xref: TAO:0000476
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005465 ! ceratohyal-branchiostegal ray joint
relationship: overlaps ZFA:0005498 ! epihyal-branchiostegal ray joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000477
name: posterior cardinal vein
namespace: zebrafish_anatomy
def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "axial vein" EXACT []
synonym: "caudal cardinal veins" EXACT []
synonym: "PCV" EXACT []
synonym: "postcardinal vein" EXACT []
xref: TAO:0000477
is_a: ZFA:0000082 ! vein
relationship: develops_from ZFA:0005077 ! vascular cord
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000096 ! cardinal system
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: part_of ZFA:0005295 ! axial blood vessel
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000479
name: caudal mesencephalo-cerebellar tract
namespace: zebrafish_anatomy
def: "Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "posterior mesencephalo-cerebellar tract" EXACT []
xref: TAO:0000479
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000643 ! rostral cerebellar tract
relationship: part_of ZFA:0001707 ! brainstem
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000480
name: caudal octavolateralis nucleus
namespace: zebrafish_anatomy
def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "nucleus octavolateralis caudalis" EXACT []
xref: TAO:0000480
is_a: ZFA:0000381 ! lateral line sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000481
name: caudal preglomerular nucleus
namespace: zebrafish_anatomy
def: "Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "nucleus praeglomerulosus caudalis" EXACT []
xref: TAO:0000481
is_a: ZFA:0001662 ! preglomerular nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000482
name: caudal tuberal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located posterior to the paraventricular organ." [ZFIN:ZDB-PUB-001220-2]
synonym: "posterior tuberal nucleus" EXACT []
xref: TAO:0000482
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000484
name: celiacomesenteric artery
namespace: zebrafish_anatomy
synonym: "coeliac-mesenteric artery" EXACT []
xref: TAO:0000484
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000485
name: central nucleus inferior lobe
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "central nucleus inferior lobes" EXACT PLURAL []
synonym: "central nucleus of the inferior lobe" EXACT []
synonym: "nucleus centralis lobi inferioris hypothalami" EXACT []
xref: TAO:0000485
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000165 ! inferior lobe
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000486
name: parietal bone
namespace: zebrafish_anatomy
def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111111-5]
synonym: "post parietal" EXACT []
xref: TAO:0000486
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005607 ! inter-parietal joint
relationship: overlaps ZFA:0005608 ! frontal-parietal joint
relationship: overlaps ZFA:0005609 ! supraoccipital-parietal joint
relationship: overlaps ZFA:0005891 ! epiotic-parietal joint
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005606 ! cranial vault
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000487
name: central zone of dorsal telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area dorsalis telencephali, zona centralis" EXACT []
synonym: "central zone of D" EXACT []
synonym: "Dc" EXACT [ZFIN:ZDB-PUB-150226-6]
xref: TAO:0000487
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000488
name: ceratobranchial bone
namespace: zebrafish_anatomy
def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ceratobranchial bones" EXACT PLURAL []
xref: TAO:0000488
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000490
name: commissura cerebelli
namespace: zebrafish_anatomy
def: "Cerebellar commissure which is located within the ventral boundary zone between valvula and corpus cerebelli. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "cerebellar commissure" EXACT []
xref: TAO:0000490
is_a: ZFA:0001708 ! cerebellar white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000491
name: commissure of the caudal tuberculum
namespace: zebrafish_anatomy
def: "Commissure in the  ventral diencephalon that lies rostral to the ventral flexure and caudal of the posterior tuberal nucleus.  Axons from the supraoptic tract extend across the hypothalamus and enter this commissure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1268]
synonym: "commissura tuberculi posterioris" EXACT []
synonym: "commissure of the posterior tuberculum" EXACT []
synonym: "CPT" RELATED [ZFIN:ZDB-PUB-961014-1268]
synonym: "Ctub" RELATED [ZFIN:ZDB-PUB-120424-30]
xref: TAO:0000491
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000492
name: coracoradialis
namespace: zebrafish_anatomy
xref: TAO:0000492
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000563 ! pectoral fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000493
name: decussation of medial funicular nucleus
namespace: zebrafish_anatomy
xref: TAO:0000493
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000494
name: deep white zone
namespace: zebrafish_anatomy
synonym: "deep white zones" EXACT PLURAL []
xref: TAO:0000494
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000445 ! optic tectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000495
name: infraorbital 5
namespace: zebrafish_anatomy
def: "Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dermosphenotic" EXACT []
xref: TAO:0000495
is_a: ZFA:0000376 ! infraorbital
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001649 ! infraorbital series
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0000496
name: compound organ
namespace: zebrafish_anatomy
def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "organ" EXACT []
xref: CARO:0000024
xref: TAO:0000496
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001094 ! whole organism
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000497
name: pelvic adductor profundus
namespace: zebrafish_anatomy
def: "Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "adductor profundus pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8]
synonym: "pelvic adductors profundus" EXACT PLURAL []
xref: TAO:0000497
is_a: ZFA:0005268 ! adductor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000258 ! pelvic fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000498
name: dilatator operculi
namespace: zebrafish_anatomy
def: "Mandibular muscle that inserts along the dorsolateral faces of the opercles.  Responsible for opercular abduction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-080306-33]
synonym: "dilatator opercula" EXACT []
synonym: "dilator opercula" RELATED []
synonym: "dilators operculi" RELATED PLURAL []
xref: TAO:0000498
is_a: ZFA:0000236 ! mandibular muscle
relationship: develops_from ZFA:0007050 ! constrictor dorsalis
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000499
name: dorsal arrector
namespace: zebrafish_anatomy
def: "The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7]
comment: Acts as antagonist to the ventral arrector ZDB-PUB-050920.
synonym: "arrector dorsalis" EXACT [ZFIN:ZDB-PUB-050920-7]
synonym: "dorsal arrectors" EXACT PLURAL []
xref: TAO:0000499
is_a: ZFA:0005275 ! arrector muscle
relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000500
name: dorsal erector
namespace: zebrafish_anatomy
def: "Dorsal fin muscle that moves individual rays the dorsal fin to an erect position.  Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dorsal erectors" EXACT PLURAL []
synonym: "erector dorsalis" EXACT []
xref: TAO:0000500
is_a: ZFA:0005267 ! erector muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000648 ! dorsal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000501
name: dorsal funiculus
namespace: zebrafish_anatomy
synonym: "funiculus dorsalis" EXACT []
xref: TAO:0000501
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000502
name: dorsal motor nucleus trigeminal nerve
namespace: zebrafish_anatomy
def: "Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle." [ISBN:3764351209]
xref: TAO:0000502
is_a: ZFA:0001365 ! trigeminal motor nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000503
name: dorsal oblique branchial muscle
namespace: zebrafish_anatomy
synonym: "dorsal oblique branchial muscles" EXACT PLURAL []
xref: TAO:0000503
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000504
name: dorsal retractor
namespace: zebrafish_anatomy
synonym: "dorsal retractors" EXACT PLURAL []
xref: TAO:0000504
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000505
name: dorsal telencephalon
namespace: zebrafish_anatomy
alt_id: ZFA:0007007
def: "Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-110119-16, ZFIN:ZDB-PUB-120111-2, ZFIN:ZDB-PUB-961014-1280]
synonym: "area dorsalis telencephali" EXACT []
synonym: "dorsal telencephalic area" EXACT []
synonym: "pallium" EXACT []
xref: TAO:0000505
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000506
name: dorsal zone of dorsal telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area dorsalis telencephali, zona dorsalis" EXACT []
synonym: "Dd" EXACT [ZFIN:ZDB-PUB-150226-6]
synonym: "dorsal zone of D" EXACT []
synonym: "dorsal zone of dorsal telencephalic area" EXACT []
xref: TAO:0000506
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000507
name: epineural
namespace: zebrafish_anatomy
def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "epineurals" EXACT PLURAL []
xref: TAO:0000507
is_a: ZFA:0000526 ! intermuscular bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000508
name: pelvic radial
namespace: zebrafish_anatomy
def: "Internal skeletal supports of the pelvic fin." [TAO:curator]
synonym: "pelvic radials" EXACT PLURAL []
xref: TAO:0000508
is_a: ZFA:0000271 ! radial
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001387 ! pelvic fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000509
name: epithalamus
namespace: zebrafish_anatomy
def: "Brain structure which is part of the diencephalon and consists of the dorsal and ventral nuclei of the habenula, and two dorsal outgrowths, the epiphysis and the saccus dorsalis. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209]
xref: TAO:0000509
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000510
name: external levatores
namespace: zebrafish_anatomy
synonym: "external levators" EXACT PLURAL []
xref: TAO:0000510
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000511
name: extraocular musculature
namespace: zebrafish_anatomy
def: "Muscle system surrounding the eye.  The extraocular musculature is derived from the neural crest. The extraocular muscles assume their adult configuration between 66 and 72 hpf.  They differentiate contemporaneously with the eye vesicle, form precise anatomic attachments to sclera and bone, and are innervated by cranial nerves 3, 4, and 6." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110512-18, ZFIN:ZDB-PUB-970121-6]
synonym: "ocular  musculature" RELATED []
xref: TAO:0000511
is_a: ZFA:0000328 ! cephalic musculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000512
name: facial lobe
namespace: zebrafish_anatomy
def: "Hindbrain nucleus that doesn't project to the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-970218-12]
synonym: "lobus facialis" EXACT []
synonym: "LVII" EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "tuberculum impar of Herrick" RELATED []
xref: TAO:0000512
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000513
name: fast muscle cell somite 1
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 1." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 1" EXACT PLURAL []
synonym: "fast muscle fiber somite 1" EXACT []
xref: TAO:0000513
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000924 ! myotome somite 1
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000514
name: frontal bone
namespace: zebrafish_anatomy
def: "Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000514
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005468 ! frontal-pterotic joint
relationship: overlaps ZFA:0005472 ! inter-frontal joint
relationship: overlaps ZFA:0005608 ! frontal-parietal joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001410 ! orbital region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005606 ! cranial vault
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000516
name: periventricular grey zone
namespace: zebrafish_anatomy
alt_id: ZFA:0001352
def: "Tissue located on the ventral side of the optic tectum,  that  contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum.  It also contains a neurogenic niche and has hypothalamic inputs.  The dendrites of neurons from the periventricular grey zones  project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140919-7, ZFIN:ZDB-PUB-180207-5]
synonym: "periventricular gray zone" EXACT []
synonym: "periventricular grey zones" EXACT PLURAL []
synonym: "periventricular layer" EXACT [ZFIN:ZDB-PUB-180207-5]
synonym: "PGZ" EXACT [ZFIN:ZDB-PUB-140919-7]
synonym: "strata periventriculare" EXACT []
synonym: "stratum griseum periventricular" EXACT [ZFIN:ZDB-PUB-180207-5]
synonym: "stratum periventriculare" EXACT []
synonym: "SVP" RELATED []
xref: TAO:0000516
xref: TAO:0001352
is_a: ZFA:0001477 ! portion of tissue
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000445 ! optic tectum
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000517
name: glossopharyngeal lobe
namespace: zebrafish_anatomy
synonym: "lobus glossopharyngei" EXACT []
xref: TAO:0000517
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000518
name: griseum centrale
namespace: zebrafish_anatomy
def: "Hindbrain nucleus which is longitudinally oriented and situated along the ventral fourth ventricle and extends rostrally up to the level of the tegmentum of the midbrain. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "central gray" EXACT []
synonym: "central grey" EXACT []
xref: TAO:0000518
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000519
name: hemal arch
namespace: zebrafish_anatomy
def: "Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "haemal arch" EXACT []
synonym: "ventral arcocentrum" EXACT []
xref: TAO:0000519
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001361 ! basiventral
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000326 ! caudal vertebra
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000520
name: horizontal commissure
namespace: zebrafish_anatomy
xref: TAO:0000520
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000521
name: hyoid muscle
namespace: zebrafish_anatomy
def: "Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch).  Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-970819-13]
synonym: "hyoid muscles" EXACT PLURAL []
xref: TAO:0000521
is_a: ZFA:0001652 ! head muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001307 ! pharyngeal musculature
relationship: part_of ZFA:0001611 ! pharyngeal arch 2
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000522
name: inferior hyohyoid
namespace: zebrafish_anatomy
def: "Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart.  The inferior hyohyoid is responsible for adduction of the hyoid arch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33]
synonym: "hyohyoideus inferior" RELATED []
synonym: "inferior hyohyoids" EXACT PLURAL []
xref: TAO:0000522
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007052 ! hyohyoideus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000523
name: inferior reticular formation
namespace: zebrafish_anatomy
xref: TAO:0000523
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000542 ! medial column
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000524
name: infraorbital lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva consistingo of four neuromast that are positioned inferior or posterior to the eye A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "infraorbital line" EXACT []
xref: TAO:0000524
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000525
name: intercalarium
namespace: zebrafish_anatomy
def: "Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0000525
is_a: ZFA:0001066 ! neural arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000461 ! Weberian ossicle
relationship: part_of ZFA:0001168 ! vertebra 2
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000526
name: intermuscular bone
namespace: zebrafish_anatomy
def: "Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "intermuscular bones" EXACT PLURAL []
xref: TAO:0000526
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000317 ! postcranial axial skeleton
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000527
name: pharyngobranchial bone
namespace: zebrafish_anatomy
def: "The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "infrapharyngobranchial" EXACT []
synonym: "pharyngobranchials" EXACT []
xref: TAO:0000527
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000528
name: interradialis caudalis
namespace: zebrafish_anatomy
def: "Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
synonym: "IC" RELATED []
synonym: "interradiali" EXACT PLURAL []
synonym: "interradialis" EXACT []
xref: TAO:0000528
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000628 ! caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000529
name: kidney
namespace: zebrafish_anatomy
def: "Cavitated compound organ located in the pleuroperitoneal cavity where hematopoiesis and filtering of blood occur." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "mesonephros" EXACT []
xref: TAO:0000529
is_a: ZFA:0001490 ! cavitated compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000163 ! renal system
relationship: part_of ZFA:0001159 ! immune system
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0000530
name: lapillus
namespace: zebrafish_anatomy
alt_id: ZFA:0001102
def: "Otolith part of utricle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020403-4]
synonym: "immature anterior otolith" RELATED []
synonym: "utricular otolith" EXACT []
synonym: "utriculith" EXACT []
xref: TAO:0000530
is_a: ZFA:0001617 ! otolith
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000700 ! utricle
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000531
name: lateral column
namespace: zebrafish_anatomy
synonym: "lateral columns" EXACT PLURAL []
xref: TAO:0000531
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000421 ! reticular formation
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000532
name: lateral valvula cerebelli
namespace: zebrafish_anatomy
def: "Lateral division of the valvula cerebelli." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "lateral division" EXACT []
synonym: "valvula cerebelli, pars lateralis" EXACT []
xref: TAO:0000532
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000533
name: lateral funiculus
namespace: zebrafish_anatomy
synonym: "lateral funiculi" EXACT PLURAL []
xref: TAO:0000533
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000534
name: lateral longitudinal fasciculus
namespace: zebrafish_anatomy
alt_id: ZFA:0000198
def: "The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis.   The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure.  The LLF becomes displaced more laterally as it approaches the torus semicircularis.  The LLF is homologous to the mammalian lateral lemniscus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1280]
synonym: "lateral lemniscus" EXACT [ZFIN:ZDB-PUB-040526-7]
synonym: "lateral longitudinal fascicle" EXACT []
synonym: "lateral longitundinal fasciculus" EXACT []
synonym: "LLF" RELATED []
xref: TAO:0000534
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000535
name: lateral reticular nucleus
namespace: zebrafish_anatomy
synonym: "lateral reticular nuclei" EXACT PLURAL []
xref: TAO:0000535
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000531 ! lateral column
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000536
name: lateral zone of dorsal telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area dorsalis telencephali, zona lateralis" EXACT []
synonym: "Dl" EXACT [ZFIN:ZDB-PUB-150226-6]
synonym: "lateral zone of D" EXACT []
synonym: "lateral zone of dorsal telencephalic area" EXACT []
xref: TAO:0000536
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000537
name: levator operculi
namespace: zebrafish_anatomy
def: "Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle.  The levator operculi is responsible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33]
synonym: "levator operculae" EXACT []
xref: TAO:0000537
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000538
name: rib
namespace: zebrafish_anatomy
def: "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dorsal rib" EXACT []
synonym: "pleural rib" EXACT []
xref: TAO:0000538
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001582 ! non-Weberian precaudal vertebra
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000539
name: locus coeruleus
namespace: zebrafish_anatomy
def: "The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons." [ZFIN:ZDB-PUB-961014-717]
comment: Sometimes considered part of the reticular formation.
synonym: "loci coeruleus" EXACT PLURAL []
xref: TAO:0000539
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000540
name: magnocellular octaval nucleus
namespace: zebrafish_anatomy
synonym: "magnocellular octaval nuclei" EXACT PLURAL []
xref: TAO:0000540
is_a: ZFA:0000401 ! octaval nerve sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000541
name: marginal blastomere
namespace: zebrafish_anatomy
def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres." [ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "marginal blastomeres" EXACT PLURAL []
xref: TAO:0000541
is_a: ZFA:0000093 ! blastomere
relationship: end ZFS:0000015 ! blastula:dome
relationship: start ZFS:0000005 ! cleavage:16-cell

[Term]
id: ZFA:0000542
name: medial column
namespace: zebrafish_anatomy
synonym: "medial column of the reticular formation" EXACT []
synonym: "medial columns" EXACT PLURAL []
xref: TAO:0000542
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000421 ! reticular formation
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000543
name: medial longitudinal fasciculus
namespace: zebrafish_anatomy
def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata.  The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord.  Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1280]
synonym: "MLF" RELATED []
xref: TAO:0000543
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000544
name: medial pterygiophores anal fin
namespace: zebrafish_anatomy
is_obsolete: true
replaced_by: ZFA:0001646

[Term]
id: ZFA:0000545
name: medulla oblongata
namespace: zebrafish_anatomy
def: "Brain structure that is located ventrocaudal to the cerebellum and just anterior to the spinal cord and contains the sensory and motor nuclei of six cranial nerves. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata." [ISBN:3764351209]
xref: TAO:0000545
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: part_of ZFA:0001707 ! brainstem
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000546
name: mesonephric duct
namespace: zebrafish_anatomy
def: "Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "renal duct" RELATED []
synonym: "Wolffian duct" RELATED []
xref: TAO:0000546
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000163 ! renal system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000547
name: mouth
namespace: zebrafish_anatomy
xref: TAO:0000547
is_a: ZFA:0000292 ! surface structure
relationship: develops_from ZFA:0001290 ! stomodeum
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: part_of ZFA:0000590 ! oral region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000548
name: musculature system
namespace: zebrafish_anatomy
def: "Anatomical system consisting of the cardiac, skeletal and smooth muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000548
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000549
name: posttemporal
namespace: zebrafish_anatomy
def: "Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "post-temporal" RELATED []
synonym: "postemporal" EXACT []
xref: TAO:0000549
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005889 ! epiotic-posttemporal joint
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000550
name: naris
namespace: zebrafish_anatomy
def: "External openings to the nasal cavity." [GOC:mh, http://medical-dictionary.thefreedictionary.com/nares, ORCiD:0000-0001-9114-8737]
synonym: "nares" EXACT PLURAL []
synonym: "nostril" EXACT []
xref: TAO:0000550
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000047 ! peripheral olfactory organ
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000551
name: nucleus lateralis valvulae
namespace: zebrafish_anatomy
def: "Hindbrain nucleus in the tegmental region of rhombomere 1.  The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100601-20, ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000551
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000552
name: nucleus ruber
namespace: zebrafish_anatomy
def: "Nucleus located in the midbrain tegmentum that controls motor coordination during locomotion." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-151021-15]
synonym: "red nucleus" EXACT []
xref: TAO:0000552
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000553
name: oculomotor nucleus
namespace: zebrafish_anatomy
synonym: "motor nucleus III" EXACT []
synonym: "nIII" EXACT []
xref: TAO:0000553
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000554
name: olfactory epithelium
namespace: zebrafish_anatomy
def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located.  The olfactory epithelium bowl-shaped structures surrounding the lumen of the olfactory pit." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35]
synonym: "nasal epithelium" EXACT []
synonym: "nasal sensory epithelium" EXACT []
xref: TAO:0000554
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0001431 ! primitive olfactory epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000047 ! peripheral olfactory organ
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000555
name: opercular flap
namespace: zebrafish_anatomy
def: "A large flap, covered by integument,  supported by several flat bones, actuated by muscles, found on the side of the head covering the gill chambers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110609-47]
synonym: "gill cover" EXACT []
synonym: "gill slit" RELATED []
synonym: "opercular apparatus" EXACT []
synonym: "opercular cover" RELATED [ZFIN:ZDB-PUB-030304-18]
synonym: "operculum" EXACT []
xref: TAO:0000555
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000556
name: optic chiasm
namespace: zebrafish_anatomy
def: "Decussation of cranial nerve II axons whereby the retinal axons cross the midline, projecting contralaterally through the optic tract." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "chiasma opticum" EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "optic commissure" EXACT []
xref: TAO:0000556
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000557
name: preural 1 vertebra
namespace: zebrafish_anatomy
def: "Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra." [ZFIN:ZDB-PUB-011008-1]
synonym: "penultimate vertebra" EXACT []
synonym: "preural centrum 1" EXACT []
synonym: "pu1" EXACT []
synonym: "second last vertebra" EXACT []
xref: TAO:0000557
is_a: ZFA:0000734 ! preural vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0000558
name: posterior macula
namespace: zebrafish_anatomy
def: "Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "pm" EXACT []
synonym: "posterior sensory patch" EXACT []
synonym: "posteromedial macula" EXACT []
xref: TAO:0000558
is_a: ZFA:0000386 ! macula
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001671 ! macula communis
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000559
name: otolith organ
namespace: zebrafish_anatomy
def: "Cavitated compound organ that is a fluid filed chamber with  a maculae on one surface and associated otolith tethered to the maculae." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "otolith organs" EXACT PLURAL []
xref: TAO:0000559
is_a: ZFA:0001490 ! cavitated compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000217 ! inner ear
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000560
name: oviduct
namespace: zebrafish_anatomy
def: "Duct that connects ovary with cloacal chamber.  In zebrafish the oviduct is a continuation of the ovary." [GOC:cvs, GOC:mh, ISBN:0199638098, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917]
synonym: "oviducts" EXACT PLURAL []
xref: TAO:0000560
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000303 ! female organism
relationship: part_of ZFA:0000632 ! reproductive system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000561
name: parasphenoid
namespace: zebrafish_anatomy
def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000561
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000290 ! sphenoid region
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001410 ! orbital region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005509 ! palate
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000563
name: pectoral fin musculature
namespace: zebrafish_anatomy
def: "Musculature that is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pectoral fin muscle" RELATED []
xref: TAO:0000563
is_a: ZFA:0000207 ! fin musculature
relationship: develops_from ZFA:0001000 ! mesenchyme pectoral fin
relationship: end ZFS:0000044 ! adult
relationship: has_developmental_contribution_from ZFA:0005924 ! middle migratory muscle precursor stream
relationship: part_of ZFA:0001161 ! pectoral fin
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0000564
name: pelvic abductor profundus
namespace: zebrafish_anatomy
def: "Deep pelvic muscle that originates from the basipterygium  and lies mainly parallel to the rays and attaches to the base of all the rays except ray 1." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "abductor profundus pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8]
synonym: "pelvic abductors profundus" EXACT PLURAL []
xref: TAO:0000564
is_a: ZFA:0005269 ! abductor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000258 ! pelvic fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000565
name: pelvic girdle
namespace: zebrafish_anatomy
def: "Anatomical cluster that consists of the paired basipterygia which support the pelvic fin." [TAO:WD]
synonym: "pelvic girdles" EXACT PLURAL []
xref: TAO:0000565
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001387 ! pelvic fin skeleton
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000566
name: posterior crista
namespace: zebrafish_anatomy
alt_id: ZFA:0000478
def: "Patch of thickened, pseudostratified epithelium that is associated with the posterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The posterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "caudal crista" EXACT []
synonym: "pc" EXACT []
synonym: "posterior crista ampullaris" EXACT []
synonym: "posterior cristae" EXACT PLURAL []
synonym: "posterior semicircular canal sensory patch" EXACT []
synonym: "posterior semicircular canal sensory patches" EXACT PLURAL []
xref: TAO:0000566
is_a: ZFA:0007068 ! otic epithelium
relationship: develops_from ZFA:0000411 ! posterior crista primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000262 ! posterior semicircular canal
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000567
name: premaxilla
namespace: zebrafish_anatomy
def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "premaxillae" EXACT PLURAL []
xref: TAO:0000567
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005475 ! inter-premaxillary joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000568
name: presumptive blood
namespace: zebrafish_anatomy
def: "Presumptive structure fated to become blood. Determined by marker expression." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000568
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000569
name: presumptive hindbrain
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the hindbrain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "presumptive rhombencephalon" EXACT []
xref: TAO:0000569
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0000146 ! presumptive brain
relationship: part_of ZFA:0007015 ! posterior presumptive neural plate
relationship: start ZFS:0000019 ! gastrula:shield

[Term]
id: ZFA:0000570
name: optic primordium
namespace: zebrafish_anatomy
alt_id: ZFA:0000021
def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "eye field" EXACT []
xref: TAO:0000570
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000023 ! segmentation:1-4 somites
relationship: part_of ZFA:0007024 ! anterior neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0000571
name: presumptive telencephalon
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the telencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000571
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000025 ! segmentation:10-13 somites
relationship: part_of ZFA:0000131 ! neural keel
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000573
name: internal cellular layer
namespace: zebrafish_anatomy
def: "Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "stratum cellulare internum bulbi olfactorii" EXACT []
xref: TAO:0000573
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000402 ! olfactory bulb
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000574
name: presumptive diencephalon
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000574
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000025 ! segmentation:10-13 somites
relationship: part_of ZFA:0000131 ! neural keel
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000575
name: prootic
namespace: zebrafish_anatomy
def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "prootics" EXACT PLURAL []
xref: TAO:0000575
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001423 ! parachordal cartilage
relationship: develops_from ZFA:0001425 ! basal plate cartilage
relationship: develops_from ZFA:0001500 ! auditory capsule
relationship: end ZFS:0000044 ! adult
relationship: has_developmental_contribution_from ZFA:0005887 ! posterior basicapsular commissure
relationship: overlaps ZFA:0005482 ! prootic-pterosphenoid joint
relationship: overlaps ZFA:0005613 ! basioccipital-prootic joint
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000576
name: pterotic
namespace: zebrafish_anatomy
def: "Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "autopterotic" EXACT []
xref: TAO:0000576
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001500 ! auditory capsule
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005468 ! frontal-pterotic joint
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000577
name: renal portal vein
namespace: zebrafish_anatomy
def: "Afferent vein that supplies the kidney." [GOC:cvs, ISBN:9781118222942, ORCiD:0000-0002-2244-7917]
synonym: "renal portal veins" EXACT PLURAL []
xref: TAO:0000577
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000578
name: ceratohyal bone
namespace: zebrafish_anatomy
def: "Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anterior ceratohyal" EXACT []
synonym: "ceratohyal anterior" EXACT []
synonym: "rostral ceratohyal" EXACT []
xref: TAO:0000578
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001400 ! ceratohyal cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005465 ! ceratohyal-branchiostegal ray joint
relationship: overlaps ZFA:0005466 ! ceratohyal-ventral hypohyal joint
relationship: overlaps ZFA:0005467 ! ceratohyal-dorsal hypohyal joint
relationship: overlaps ZFA:0005497 ! epihyal-ceratohyal joint
relationship: overlaps ZFA:0005859 ! ceratohyal-interhyal joint
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000579
name: rostral mesencephalo-cerebellar tract
namespace: zebrafish_anatomy
def: "Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "anterior mesencephalo-cerebellar tract" EXACT []
xref: TAO:0000579
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000643 ! rostral cerebellar tract
relationship: part_of ZFA:0001707 ! brainstem
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000580
name: rostral preglomerular nucleus
namespace: zebrafish_anatomy
def: "Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "anterior preglomerular nucleus" EXACT []
synonym: "nucleus praeglomerulosus anterior" EXACT []
xref: TAO:0000580
is_a: ZFA:0001662 ! preglomerular nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000581
name: rostral tuberal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "anterior tuberal nucleus" EXACT []
synonym: "nucleus tuberis anterior" EXACT []
xref: TAO:0000581
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000707 ! ventral hypothalamic zone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000582
name: saccus dorsalis
namespace: zebrafish_anatomy
xref: TAO:0000582
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000509 ! epithalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000583
name: scapula
namespace: zebrafish_anatomy
def: "Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:GA_TG]
synonym: "scapulae" EXACT PLURAL []
xref: TAO:0000583
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001455 ! scapulocoracoid
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000585
name: kinethmoid cartilage
namespace: zebrafish_anatomy
def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000585
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000586
name: preural 2 vertebra
namespace: zebrafish_anatomy
def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra." [ZFIN:ZDB-PUB-011008-1]
synonym: "antepenultimate vertebra" EXACT []
synonym: "preural centrum 2" EXACT []
synonym: "pu2" EXACT []
synonym: "third last vertebra" EXACT []
xref: TAO:0000586
is_a: ZFA:0000734 ! preural vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000587
name: sphenotic
namespace: zebrafish_anatomy
def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "autosphenotic" EXACT []
xref: TAO:0000587
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001506 ! tectum synoticum
relationship: develops_from ZFA:0001515 ! taenia marginalis posterior
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000588
name: statoacoustic (VIII) ganglion
namespace: zebrafish_anatomy
def: "The sensory ganglion of the ear. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/stato/stato.html'>statoacoustic ganglion</a> by T. Whitfield.)" [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "auditory ganglion" EXACT []
synonym: "gVIII" EXACT []
synonym: "octaval ganglion" EXACT []
synonym: "sag" EXACT []
synonym: "statoacoustic ganglia" EXACT PLURAL []
xref: TAO:0000588
is_a: ZFA:0000013 ! cranial ganglion
relationship: develops_from ZFA:0000138 ! otic placode
relationship: develops_from ZFA:0000762 ! facio-acoustic neural crest
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001138 ! vestibuloauditory system
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000589
name: sulcus ypsiloniformis
namespace: zebrafish_anatomy
def: "Anatomical groove which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:cvs, GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917]
xref: TAO:0000589
is_a: ZFA:0001690 ! groove
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000505 ! dorsal telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000590
name: oral region
namespace: zebrafish_anatomy
def: "Region of the head where the mouth and oral structures are located." [GOC:ymb, ORCid:0000-0002-9900-7880]
xref: TAO:0000590
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000591
name: presumptive paraxial mesoderm
namespace: zebrafish_anatomy
def: "Portion of presumptive mesoderm fated to become paraxial mesoderm. Determined by fate mapping." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000591
is_a: ZFA:0001377 ! presumptive mesoderm
relationship: end ZFS:0000021 ! gastrula:90%-epiboly
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000592
name: superficial pelvic adductor
namespace: zebrafish_anatomy
def: "Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "adductor superficialis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8]
synonym: "superficial pelvic adductors" EXACT PLURAL []
xref: TAO:0000592
is_a: ZFA:0005268 ! adductor muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000258 ! pelvic fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000593
name: superior reticular formation medial column
namespace: zebrafish_anatomy
comment: There may be a cholinergic nucleus called the superior reticular nucleus rostral to the locus coeruleus, ZDB-PUB-040526-6.
xref: TAO:0000593
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000542 ! medial column
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000594
name: supracleithrum
namespace: zebrafish_anatomy
def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:WD]
synonym: "supracleithra" EXACT PLURAL []
xref: TAO:0000594
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000595
name: supraoccipital
namespace: zebrafish_anatomy
def: "Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exoccipital and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000595
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001506 ! tectum synoticum
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005609 ! supraoccipital-parietal joint
relationship: part_of ZFA:0001414 ! occipital region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005606 ! cranial vault
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000596
name: supraorbital series
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001410

[Term]
id: ZFA:0000597
name: telencephalic white matter
namespace: zebrafish_anatomy
def: "CNS white matter that is part of the telencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "telencephalic tract/commissure" EXACT []
xref: TAO:0000597
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000598
name: testis
namespace: zebrafish_anatomy
def: "Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-161215-23]
synonym: "testes" EXACT PLURAL []
xref: TAO:0000598
is_a: ZFA:0000413 ! gonad
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000242 ! male organism
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000599
name: torus semicircularis
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "semicircular torus" EXACT []
xref: TAO:0000599
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001357 ! alar plate midbrain region
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000600
name: cranial nerve IV
namespace: zebrafish_anatomy
def: "Cranial nerve that innervates the oculomotor system. The trochlear nerve is the only motor nerve to project dorsally and then cross the midline before exiting the neuroepithelium and re-orienting ventrally to project to the contralateral superior oblique extraocular muscle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-131119-12]
synonym: "CN-IV" EXACT []
synonym: "trochlear" EXACT []
synonym: "trochlear nerve" EXACT []
xref: TAO:0000600
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000601
name: pretectal periventricular nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "periventricular pretectum" EXACT []
synonym: "pretectal periventricular nuclei" EXACT PLURAL []
xref: TAO:0000601
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000293 ! synencephalon
relationship: part_of ZFA:0000418 ! pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000602
name: uroneural
namespace: zebrafish_anatomy
def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone." [http://citebank.org/node/36904, ISSN:0362-2525, TAO:WD]
synonym: "uroneurals" EXACT PLURAL []
xref: TAO:0000602
is_a: ZFA:0001066 ! neural arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000603
name: valvula cerebelli
namespace: zebrafish_anatomy
def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "valvula" RELATED []
synonym: "valvula cerebellum" EXACT PLURAL []
xref: TAO:0000603
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000604
name: ventral aorta
namespace: zebrafish_anatomy
def: "Outflow artery from the heart to the aortic arches." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000604
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000605
name: ventral funiculus
namespace: zebrafish_anatomy
synonym: "ventral funiculi" EXACT PLURAL []
xref: TAO:0000605
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000606
name: ventral oblique branchial muscle
namespace: zebrafish_anatomy
synonym: "ventral oblique branchial muscles" EXACT PLURAL []
xref: TAO:0000606
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000607
name: ventral rhombencephalic commissure
namespace: zebrafish_anatomy
def: "Brainstem commissure that intersects the medial longitudinal fasciculus." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000607
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000608
name: ventral transverse
namespace: zebrafish_anatomy
synonym: "transverse ventralis" EXACT []
synonym: "transversus ventralis" EXACT []
xref: TAO:0000608
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000609
name: ventrolateral nucleus
namespace: zebrafish_anatomy
def: "Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000609
is_a: ZFA:0001665 ! midbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000599 ! torus semicircularis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000610
name: vertical myoseptum
namespace: zebrafish_anatomy
def: "Connective tissue partitions developing between the myotomes." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "transverse myoseptum" EXACT []
xref: TAO:0000610
is_a: ZFA:0001089 ! myoseptum
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000611
name: visceromotor column
namespace: zebrafish_anatomy
def: "Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata." [ISBN:3540560130]
xref: TAO:0000611
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000612
name: protractor hyoidei
namespace: zebrafish_anatomy
def: "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII.  Formed by the intermandibularis posterior and ventral interhyoideus." [TAO:WD, ZFIN:ZDB-PUB-080306-33]
comment: Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317.\n\nIn the zebrafish, as in most other teleosts, the interhyoideus becomes associated with the intermandibularis posterior, forming the protractor hyoideus. ZDB-PUB-080306-33.
synonym: "protractor hyoideus" EXACT PLURAL []
synonym: "protractors hyoidei" EXACT PLURAL []
xref: TAO:0000612
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000614
name: abductor profundus
namespace: zebrafish_anatomy
def: "Abductor muscle that develops from the primitive pectoral fin abductor.  It originates along the anterior skeletal flange of the pectoral girdle.  The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7]
synonym: "abductors profundus" EXACT PLURAL []
xref: TAO:0000614
is_a: ZFA:0005269 ! abductor muscle
relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000563 ! pectoral fin musculature
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000615
name: adductor arcus palatini
namespace: zebrafish_anatomy
def: "Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid.  The Adductor arcus palatini is responsible for suspensorial adduction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-080306-33]
synonym: "adductors arcus palatini" EXACT PLURAL []
xref: TAO:0000615
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000616
name: adductor profundus
namespace: zebrafish_anatomy
def: "Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle.  The adductor profundus develops from the primitive pectoral fin adductor." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7]
synonym: "adductors profundus" EXACT PLURAL []
xref: TAO:0000616
is_a: ZFA:0005268 ! adductor muscle
relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000563 ! pectoral fin musculature
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000617
name: anal erector
namespace: zebrafish_anatomy
def: "Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines.  A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine.  These muscles act in opposition to the anal depressors to raise the anal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "anal erectors" EXACT PLURAL []
synonym: "erectores anales" EXACT [ZFIN:ZDB-PUB-171118-8]
xref: TAO:0000617
is_a: ZFA:0005267 ! erector muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001154 ! anal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000618
name: ansulate commissure
namespace: zebrafish_anatomy
def: "Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "Cans" EXACT []
synonym: "commissura ansulata" EXACT []
synonym: "ventral tegmental commissure" EXACT []
xref: TAO:0000618
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000619
name: anterior crista
namespace: zebrafish_anatomy
alt_id: ZFA:0000273
def: "Patch of thickened, pseudostratified epithelium that is associated with the anterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The anterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "ac" EXACT []
synonym: "anterior crista ampullaris" EXACT []
synonym: "anterior cristae" EXACT PLURAL []
synonym: "anterior semicircular canal sensory patch" EXACT []
synonym: "anterior semicircular canal sensory patches" EXACT PLURAL []
synonym: "rostral crista" EXACT []
xref: TAO:0000619
is_a: ZFA:0007068 ! otic epithelium
relationship: develops_from ZFA:0000468 ! anterior crista primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000314 ! anterior semicircular canal
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000620
name: autopalatine
namespace: zebrafish_anatomy
def: "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms)." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "palatine" EXACT []
xref: TAO:0000620
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005420 ! autopalatine-lateral ethmoid joint
relationship: overlaps ZFA:0005421 ! autopalatine-maxillary joint
relationship: overlaps ZFA:0005422 ! autopalatine-vomer joint
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0000621
name: quadrate
namespace: zebrafish_anatomy
def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "quadrates" EXACT PLURAL []
xref: TAO:0000621
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005486 ! quadrate-metapterygoid joint
relationship: overlaps ZFA:0005616 ! quadrate-entopterygoid joint
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000622
name: barbel
namespace: zebrafish_anatomy
def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "barble" EXACT []
xref: TAO:0000622
is_a: ZFA:0000292 ! surface structure
relationship: develops_from ZFA:0005119 ! barbel primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0000623
name: basipterygium
namespace: zebrafish_anatomy
def: "Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:curator]
synonym: "pelvic bone" EXACT []
synonym: "pelvic girdle" RELATED []
xref: TAO:0000623
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001539 ! basipterygium cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005471 ! inter-basipterygium joint
relationship: part_of ZFA:0000565 ! pelvic girdle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000624
name: brachium conjunctivum
namespace: zebrafish_anatomy
comment: Term is being obsoleted because it cannot be anatomically identified in zebrafish. From Neuroanatomy of the Zebrafish Brain ISBN:3764351209.
xref: TAO:0000624
is_obsolete: true

[Term]
id: ZFA:0000626
name: bulbo-spinal tract
namespace: zebrafish_anatomy
def: "Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "tractus bulbospinalis" EXACT []
xref: TAO:0000626
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000627
name: epihyal
namespace: zebrafish_anatomy
def: "Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "caudal ceratohyal" EXACT []
synonym: "posterior ceratohyal" EXACT []
xref: TAO:0000627
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001400 ! ceratohyal cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005497 ! epihyal-ceratohyal joint
relationship: overlaps ZFA:0005498 ! epihyal-branchiostegal ray joint
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000628
name: caudal fin musculature
namespace: zebrafish_anatomy
def: "Fin musculature that is part of the caudal fin.  The musculature is  composed of 12 muscles that are arranged in a superficial and a deep muscle layer. Nerve roots of spinal segments 27-31 supply the caudal fin muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-011008-1]
xref: TAO:0000628
is_a: ZFA:0000207 ! fin musculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001058 ! caudal fin
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0000629
name: caudal motor nucleus
namespace: zebrafish_anatomy
def: "Abducens motor nucleus which is located at the level of the intermediate reticular formation." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "nucleus nervi abducentis, pars caudalis" EXACT []
synonym: "nVIc" EXACT []
xref: TAO:0000629
is_a: ZFA:0000713 ! abducens motor nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000630
name: caudal parvocellular preoptic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209]
synonym: "caudal parvocellular preoptic nuclei" EXACT PLURAL []
synonym: "posterior parvocellular preoptic nucleus" EXACT []
xref: TAO:0000630
is_a: ZFA:0001680 ! parvocellular preoptic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000470 ! preoptic area
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000631
name: caudal pretectal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "caudal pretectal nuclei" EXACT PLURAL []
synonym: "posterior pretectal nucleus" EXACT []
xref: TAO:0000631
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000687 ! superficial pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000632
name: reproductive system
namespace: zebrafish_anatomy
def: "Anatomical system that has as its parts the organs concerned with reproduction." [UBERON:curator]
xref: TAO:0000632
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0000633
name: caudal tuberculum
namespace: zebrafish_anatomy
def: "Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "posterior tubercle" EXACT []
synonym: "posterior tuberculum" EXACT []
xref: TAO:0000633
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: has_developmental_contribution_from ZFA:0005909 ! presumptive preglomerular region
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000634
name: caudal hypothalamic zone
namespace: zebrafish_anatomy
def: "Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "hypothalamus pars tuberalis " EXACT [ZFIN:ZDB-PUB-961014-1280]
synonym: "tuberal hypothalamus" EXACT [ZFIN:ZDB-PUB-961014-1280]
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000392 ! median tuberal portion
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000635
name: central pretectal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "nucleus praetectalis centralis" EXACT []
xref: TAO:0000635
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000183 ! central pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000636
name: cerebellar crest
namespace: zebrafish_anatomy
def: "Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer." [GOC:ymb, ISBN:3540560130, ORCiD:0000-0002-9900-7880]
comment: Not sure how much of the molecular layer is cerebellar crest.
synonym: "crista cerebellaris molecular layer" EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000636
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000291 ! medial octavolateralis nucleus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000637
name: claustrum cartilage
namespace: zebrafish_anatomy
def: "Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000637
is_a: ZFA:0001457 ! postcranial axial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000461 ! Weberian ossicle
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000638
name: commissura rostral, pars dorsalis
namespace: zebrafish_anatomy
def: "Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209]
synonym: "commissura anterior, pars dorsalis" EXACT []
xref: TAO:0000638
is_a: ZFA:0001108 ! anterior commissure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000639
name: commissure of the secondary gustatory nucleus
namespace: zebrafish_anatomy
def: "Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "commissura nucleorum gustatoriorum secundariorum" EXACT []
synonym: "commissure of the secondary gustatory nuclei" RELATED []
xref: TAO:0000639
is_a: ZFA:0001708 ! cerebellar white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000640
name: cornea
namespace: zebrafish_anatomy
def: "Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/cornea, ORCiD:0000-0001-9114-8737]
synonym: "corneas" EXACT PLURAL []
xref: TAO:0000640
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001688 ! corneal primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005566 ! anterior segment eye
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0000641
name: cranial nerve
namespace: zebrafish_anatomy
def: "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cranial nerves" EXACT PLURAL []
xref: TAO:0000641
is_a: ZFA:0007009 ! nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000642
name: decussation of the medial octavolateralis nucleus
namespace: zebrafish_anatomy
xref: TAO:0000642
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000381 ! lateral line sensory nucleus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000643
name: rostral cerebellar tract
namespace: zebrafish_anatomy
def: "CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "anterior cerebellar tract" EXACT []
synonym: "tractus cerebellaris anterior" EXACT []
xref: TAO:0000643
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000644
name: dental plate
namespace: zebrafish_anatomy
comment: "Dermal tooth plates are variable structures.  During upper pharyngeal arch development in Astatotilapia elegans, dermal tooth plates are formed entirely of fused tooth pedicels (Huys-seune, 1983). However, in lower pharyngeals of the same species, teeth attach to a preexisting plate (Vandewalle et al., 1994). In other teleosts (e.g., cyprinid fifth ceratobranchials), there is no tooth plate per se, because tooth pedicels do not fuse to one another, but each fuses to the endochondral bone separately (see Gosline, 1985)."\nConsider ZFA:0001239  ceratobranchial 5 bone or ZFA:0000694 ceratobranchial 5 tooth
synonym: "dental plates" EXACT PLURAL []
xref: TAO:0000644
is_obsolete: true

[Term]
id: ZFA:0000645
name: descending octaval nucleus
namespace: zebrafish_anatomy
synonym: "nucleus octavus descendens" EXACT []
xref: TAO:0000645
is_a: ZFA:0000401 ! octaval nerve sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000646
name: anal fin distal radial
namespace: zebrafish_anatomy
def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anal fin distal radials" EXACT PLURAL []
xref: TAO:0000646
is_a: ZFA:0001646 ! anal fin radial
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001420 ! anal fin pterygiophore
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000647
name: dorsal caudal thalamic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal posterior thalamic nucleus" EXACT []
synonym: "nucleus dorsalis posterior thalami" EXACT []
xref: TAO:0000647
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000653 ! dorsal thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000648
name: dorsal fin musculature
namespace: zebrafish_anatomy
def: "Musculature that is part of the dorsal fin.  The dorsal fin musculature is composed of one unit per fin ray that are arranged in series on each side of the body. Each unit is composed of one fin ray, three supporting pterygophores, and a set of paired depressor, erector, and inclinator muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21]
xref: TAO:0000648
is_a: ZFA:0000207 ! fin musculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001173 ! dorsal fin
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000649
name: dorsal horn spinal cord
namespace: zebrafish_anatomy
synonym: "cornu dorsale" EXACT []
synonym: "dorsal horn" EXACT []
xref: TAO:0000649
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000650
name: dorsal motor root of V
namespace: zebrafish_anatomy
synonym: "dorsal motor roots of V" EXACT PLURAL []
xref: TAO:0000650
is_a: ZFA:0001663 ! cranial nerve root
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000651
name: dorsal pelvic arrector
namespace: zebrafish_anatomy
def: "Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8]
synonym: "arrector dorsalis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8]
synonym: "dorsal pelvic arrectors" EXACT PLURAL []
xref: TAO:0000651
is_a: ZFA:0005275 ! arrector muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000258 ! pelvic fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000652
name: dorsal root
namespace: zebrafish_anatomy
def: "The afferent sensory portion of the spinal nerve root." [http://en.wikipedia.org/wiki/Dorsal_root]
synonym: "radix dorsalis" EXACT []
xref: TAO:0000652
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005578 ! spinal nerve root
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000653
name: dorsal thalamus
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the dorsal part of the thalamus and emerges ventral to the caudal portion of the ventral habenular nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "thalamus" RELATED [ZFIN:ZDB-PUB-100621-4]
synonym: "thalamus, pars dorsalis" EXACT []
xref: TAO:0000653
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001215 ! thalamus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000654
name: rostral motor nucleus
namespace: zebrafish_anatomy
def: "Abducens motor nucleus which is located at the level of the superior reticular formation." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000654
is_a: ZFA:0000713 ! abducens motor nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000655
name: dorsomedial optic tract
namespace: zebrafish_anatomy
synonym: "tractus opticus dorsomedialis" EXACT []
xref: TAO:0000655
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000252 ! optic tract
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000656
name: ectopterygoid
namespace: zebrafish_anatomy
def: "The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate.  It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "ectopterygoids" EXACT PLURAL []
xref: TAO:0000656
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000657
name: entopterygoid
namespace: zebrafish_anatomy
def: "The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL)." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "endopterygoid" EXACT []
synonym: "mesopterygoid" EXACT []
xref: TAO:0000657
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005616 ! quadrate-entopterygoid joint
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000658
name: epibranchial bone
namespace: zebrafish_anatomy
def: "Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "epibranchial bones" EXACT PLURAL []
xref: TAO:0000658
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001527 ! epibranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000660
name: epural
namespace: zebrafish_anatomy
def: "A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone." [TAO:curator]
xref: TAO:0000660
is_a: ZFA:0001336 ! neural spine
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000661
name: exoccipital
namespace: zebrafish_anatomy
def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen).  Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "exoccipitals" EXACT PLURAL []
xref: TAO:0000661
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001423 ! parachordal cartilage
relationship: develops_from ZFA:0001504 ! occipital arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005423 ! basioccipital-exoccipital joint
relationship: part_of ZFA:0001414 ! occipital region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000662
name: external pharyngoclavicularis
namespace: zebrafish_anatomy
synonym: "external pharyngoclavicularae" EXACT PLURAL []
xref: TAO:0000662
is_a: ZFA:0000172 ! branchial muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000663
name: extrascapula
namespace: zebrafish_anatomy
alt_id: ZFA:0001413
def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:curator]
synonym: "supratemporal" EXACT []
synonym: "tabular" EXACT []
xref: TAO:0000663
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000664
name: cranial nerve VII
namespace: zebrafish_anatomy
def: "Cranial nerve where motor axons innervate muscles derived from the second branchial arch. The motor neurons are generated in rhombomere 4." [ZFIN:ZDB-PUB-040109-20]
synonym: "CN-VII" EXACT []
synonym: "facial nerve" EXACT []
synonym: "nervus facialis" EXACT []
xref: TAO:0000664
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000665
name: rostral root of abducens nerve
namespace: zebrafish_anatomy
xref: TAO:0000665
is_a: ZFA:0001663 ! cranial nerve root
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000310 ! cranial nerve VI
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000666
name: filamental artery
namespace: zebrafish_anatomy
def: "Artery of the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "filamental arteries" EXACT PLURAL []
xref: TAO:0000666
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000667 ! gill filament
relationship: part_of ZFA:0005003 ! pharyngeal vasculature
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000667
name: gill filament
namespace: zebrafish_anatomy
def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [GOC:mh, http://www.briancoad.com/Dictionary/G.htm, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "gill filaments" EXACT PLURAL []
xref: TAO:0000667
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000354 ! gill
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000668
name: cranial nerve IX
namespace: zebrafish_anatomy
def: "Cranial nerve that innervates gill muscles.  Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches.  The root is typically found at rhombomere 6.  This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-040109-20, ZFIN:ZDB-PUB-110727-5]
synonym: "CN-IX" EXACT []
synonym: "glossopharyngeal nerve" EXACT []
synonym: "nervus glossopharyngeus" EXACT []
xref: TAO:0000668
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0000669
name: head kidney
namespace: zebrafish_anatomy
def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney.  It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-040923-1]
synonym: "anterior kidney" EXACT []
synonym: "kidney marrow" EXACT []
xref: TAO:0000669
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000529 ! kidney
relationship: part_of ZFA:0001158 ! endocrine system
relationship: part_of ZFA:0005023 ! hematopoietic system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000670
name: hepatic vein
namespace: zebrafish_anatomy
def: "Vein that carries blood away from the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "hepatic veins" EXACT PLURAL []
xref: TAO:0000670
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000671
name: horizontal myoseptum
namespace: zebrafish_anatomy
def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "horizontal septum" EXACT []
xref: TAO:0000671
is_a: ZFA:0001089 ! myoseptum
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000672
name: hyomandibula
namespace: zebrafish_anatomy
def: "The hyomandibula is the large, dorsal-most member of the hyoid arch.  It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints.  A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hyomandibular" EXACT []
xref: TAO:0000672
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005469 ! hyomandibula-metapterygoid joint
relationship: overlaps ZFA:0005632 ! preopercle vertical limb-hyomandibula joint
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000673
name: hypobranchial artery
namespace: zebrafish_anatomy
def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "HA" EXACT []
xref: TAO:0000673
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0005005 ! aortic arch 1
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000674
name: interopercle
namespace: zebrafish_anatomy
def: "Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "interopercles" EXACT PLURAL []
xref: TAO:0000674
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000555 ! opercular flap
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000676
name: sagitta
namespace: zebrafish_anatomy
alt_id: ZFA:0001103
def: "Otolith that is part of the sacculus." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020403-4]
synonym: "immature posterior otolith" RELATED []
synonym: "saccular otolith" EXACT []
synonym: "sacculith" EXACT []
xref: TAO:0000676
is_a: ZFA:0001617 ! otolith
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000428 ! saccule
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000677
name: segmental intercostal artery
namespace: zebrafish_anatomy
synonym: "segmental intercostal arteries" EXACT PLURAL []
xref: TAO:0000677
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000678
name: hair cell anterior macula
namespace: zebrafish_anatomy
def: "Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.)" [MESH:68018069, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "sensory hair cells anterior macula" EXACT PLURAL []
xref: TAO:0000678
is_a: ZFA:0009366 ! hair cell
relationship: develops_from ZFA:0001098 ! immature hair cell anterior macula
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000168 ! anterior macula
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000679
name: sensory root of facial nerve
namespace: zebrafish_anatomy
synonym: "sensory roots of facial nerves" EXACT PLURAL []
xref: TAO:0000679
is_a: ZFA:0001663 ! cranial nerve root
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000680
name: sinoatrial valve
namespace: zebrafish_anatomy
def: "Heart valve that forms between the atrium and the sinus venosus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "sinoatrial valves" EXACT PLURAL []
xref: TAO:0000680
is_a: ZFA:0005065 ! heart valve
relationship: develops_from ZFA:0001317 ! endocardial cushion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000154 ! sinus venosus
relationship: part_of ZFA:0000471 ! atrium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000681
name: neural postzygapophysis
namespace: zebrafish_anatomy
def: "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "neural postzygapophyses" EXACT PLURAL []
synonym: "neural postzygopophysis" EXACT []
xref: TAO:0000681
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001066 ! neural arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000682
name: spinal artery
namespace: zebrafish_anatomy
synonym: "spinal arteries" EXACT PLURAL []
xref: TAO:0000682
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000683
name: subcommissural organ
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "SCO" EXACT []
xref: TAO:0000683
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000293 ! synencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000684
name: intertectal commissure
namespace: zebrafish_anatomy
def: "CNS white matter (commissure) that runs between the optic tectal hemispheres." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000684
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000445 ! optic tectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000685
name: superficial abductor
namespace: zebrafish_anatomy
def: "Abductor muscle that develops from the primitive pectoral fin abductor.  The  abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7]
synonym: "abductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7]
synonym: "superficial abductors" EXACT PLURAL []
xref: TAO:0000685
is_a: ZFA:0005269 ! abductor muscle
relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000563 ! pectoral fin musculature
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000686
name: superficial grey and white zone
namespace: zebrafish_anatomy
synonym: "superficial gray and white zone" EXACT []
synonym: "superficial grey and white zones" EXACT PLURAL []
xref: TAO:0000686
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000445 ! optic tectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000687
name: superficial pretectum
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000687
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005908 ! presumptive pretectum proliferative zone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000418 ! pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000688
name: olfactory support cell
namespace: zebrafish_anatomy
def: "Supporting cell that is part of the olfactory epithelium. Their cell bodies are more or less cylindrical, often with a pronounced basal part resting on the basal lamina. Their apical surface is covered with microvillous-like protrusions. Nuclei of olfactory support cell lie below the nuclear layer of olfactory sensory neurons,  a feature that is reverse that of other vertebrates.  The nuclei are less electron dense then those of the olfactory sensory neurons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-7]
comment: Different nuclear position and morphology from CL_0000853.
subset: cell_slim
synonym: "support cells" RELATED PLURAL []
xref: TAO:0000688
is_a: ZFA:0009000 ! cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000047 ! peripheral olfactory organ
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0000689
name: supracommissural nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali, nucleus supracommissuralis" EXACT []
synonym: "supracommissural nucleus of V" EXACT []
xref: TAO:0000689
is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000690
name: supraoptic commissure
namespace: zebrafish_anatomy
xref: TAO:0000690
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000691
name: supraorbital bone
namespace: zebrafish_anatomy
def: "Paired dermal bones that form the anterodorsal margin of the orbit." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "supraorbital bones" EXACT PLURAL []
xref: TAO:0000691
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001410 ! orbital region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000692
name: symplectic
namespace: zebrafish_anatomy
def: "The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "symplectics" EXACT PLURAL []
xref: TAO:0000692
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005631 ! preopercle horizontal limb-symplectic joint
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000693
name: tangential nucleus
namespace: zebrafish_anatomy
def: "The tangential nucleus is located in rhombomere 5 and receives a dense utricular input.   Tangential nucleus neurons project contralaterally to extraocular motoneurons and to multiple sites within the reticulospinal complex; unlike other classes of vestibular neuron, they modulate their firing in response to static head displacements." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120702-13, ZFIN:ZDB-PUB-160324-18]
xref: TAO:0000693
is_a: ZFA:0000401 ! octaval nerve sensory nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000694
name: ceratobranchial 5 tooth
namespace: zebrafish_anatomy
def: "Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial 5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial 5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pharyngeal tooth" EXACT []
synonym: "teeth" EXACT PLURAL []
synonym: "tooth" EXACT []
xref: TAO:0000694
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005138 ! dental organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000056 ! pharynx
relationship: part_of ZFA:0001239 ! ceratobranchial 5 bone
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000695
name: labial cavity
namespace: zebrafish_anatomy
def: "The anatomical space located between the lips and the oral valves." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "labial cavities" EXACT PLURAL []
xref: TAO:0000695
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000696
name: telencephalic ventricle
namespace: zebrafish_anatomy
synonym: "lateral ventricle" EXACT []
synonym: "telencephalic vesicle" EXACT []
synonym: "ventriculi telencephali " EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0000696
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001259 ! forebrain ventricle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000697
name: cranial nerve V
namespace: zebrafish_anatomy
def: "Cranial nerve which exits the medulla oblongata and carries both sensory and motor axons to and from the facial region. The root is typically found at rhombomere 2." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110727-5]
comment: ZDB-PUB-040109-20\nThe motor neuron cell bodies arise in rhombomeres 2 and 3. The neurons in r2 extend axons dorsolaterally to their exit point. The axons of branchiomotor neuron cell bodies in r3 initially extend dorsolaterally, then turn rostrally to reach their exit point in r2. The anterior turn occurs where the motor axons meet the ingrowing trigeminal sensory axons.
synonym: "CN-V" EXACT []
synonym: "trigeminal nerve" EXACT []
xref: TAO:0000697
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000698
name: tripus
namespace: zebrafish_anatomy
def: "The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0000698
is_a: ZFA:0001591 ! endochondral bone
is_a: ZFA:0001636 ! membrane bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000461 ! Weberian ossicle
relationship: part_of ZFA:0001169 ! vertebra 3
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000699
name: ural ossification
namespace: zebrafish_anatomy
comment: Ural ossification is a process not a structure, thus it belongs in GO biologyical process not ZFA.
is_obsolete: true

[Term]
id: ZFA:0000700
name: utricle
namespace: zebrafish_anatomy
def: "Otolith organ comprised of the macula utricle and lapillus. The lagena is part of the pars superior. The utricle functions in the detection of movement." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "utriculus" EXACT []
xref: TAO:0000700
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000559 ! otolith organ
relationship: part_of ZFA:0005409 ! pars superior ear
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000701
name: ventral arrector
namespace: zebrafish_anatomy
def: "Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7]
comment: Acts as antagonist to the dorsal arrector.
synonym: "arrector ventralis" EXACT [ZFIN:ZDB-PUB-050920-7]
synonym: "ventral arrectors" EXACT PLURAL []
xref: TAO:0000701
is_a: ZFA:0005275 ! arrector muscle
relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000563 ! pectoral fin musculature
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0000702
name: ventral horn spinal cord
namespace: zebrafish_anatomy
synonym: "ventral horns spinal cord" EXACT PLURAL []
xref: TAO:0000702
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000703
name: ventral motor nucleus trigeminal nerve
namespace: zebrafish_anatomy
def: "Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle." [ISBN:3764351209]
xref: TAO:0000703
is_a: ZFA:0001365 ! trigeminal motor nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000704
name: ventral pelvic arrector
namespace: zebrafish_anatomy
def: "Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8v]
synonym: "ventral pelvic arrectors" EXACT PLURAL []
xref: TAO:0000704
is_a: ZFA:0005275 ! arrector muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000258 ! pelvic fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000705
name: ventral root
namespace: zebrafish_anatomy
def: "The efferent motor portion of the spinal nerve root." [http://en.wikipedia.org/wiki/Nerve_root]
synonym: "ventral roots" EXACT PLURAL []
xref: TAO:0000705
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005578 ! spinal nerve root
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000706
name: posterior intestine
namespace: zebrafish_anatomy
def: "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates." [ZFIN:ZDB-PUB-050120-6]
xref: TAO:0000706
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005737 ! intestinal rod
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001338 ! intestine
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000707
name: ventral hypothalamic zone
namespace: zebrafish_anatomy
def: "Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000707
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000392 ! median tuberal portion
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000708
name: ventrolateral optic tract
namespace: zebrafish_anatomy
synonym: "ventrolateral optic tracts" EXACT PLURAL []
xref: TAO:0000708
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000252 ! optic tract
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000709
name: vestibulo-spinal tract
namespace: zebrafish_anatomy
synonym: "vestibulo-spinal tracts" EXACT PLURAL []
xref: TAO:0000709
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000710
name: viscerosensory commissural nucleus of Cajal
namespace: zebrafish_anatomy
synonym: "commissural nucleus of Cajal" EXACT []
synonym: "nucleus commissuralis Cajal" EXACT []
xref: TAO:0000710
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000711
name: DEL
namespace: zebrafish_anatomy
def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast." [ZFIN:ZDB-PUB-961014-576]
synonym: "deep cell layer" EXACT [ZFIN:ZDB-PUB-961014-576]
synonym: "DEL cells" EXACT PLURAL []
xref: TAO:0000711
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0001473 ! deep blastomere
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0001176 ! blastoderm
relationship: start ZFS:0000016 ! blastula:30%-epiboly

[Term]
id: ZFA:0000712
name: internal yolk syncytial layer
namespace: zebrafish_anatomy
def: "The portion of the YSL that lies deep to the blastoderm during epiboly." [ZFIN:ZDB-PUB-961014-576]
synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000712
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000088 ! yolk syncytial layer
relationship: start ZFS:0000013 ! blastula:oblong

[Term]
id: ZFA:0000713
name: abducens motor nucleus
namespace: zebrafish_anatomy
def: "Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "abducens motor nuclei" EXACT PLURAL []
synonym: "abducens nucleus" EXACT []
synonym: "motor nucleus VI" EXACT []
synonym: "nVI" EXACT []
xref: TAO:0000713
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000714
name: accessory pretectal nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "APN" EXACT []
synonym: "nucleus praetectalis accessorius" EXACT []
xref: TAO:0000714
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000183 ! central pretectum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000715
name: adductor hyohyoid
namespace: zebrafish_anatomy
def: "Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays.  The adductor hyohyoid is responsible for constriction of the branchiostegal membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33]
synonym: "adductors hyohyoid" EXACT PLURAL []
synonym: "hyohyoidei adductores" EXACT []
xref: TAO:0000715
is_a: ZFA:0000521 ! hyoid muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007052 ! hyohyoideus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000716
name: afferent branchial artery
namespace: zebrafish_anatomy
def: "Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch." [ZFIN:ZDB-PUB-010205-5]
synonym: "ABA" EXACT []
xref: TAO:0000716
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000354 ! gill
relationship: part_of ZFA:0005003 ! pharyngeal vasculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000717
name: apical ectodermal ridge median fin fold
namespace: zebrafish_anatomy
def: "Apical ectodermal ridge that is part of the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000717
is_a: ZFA:0001702 ! apical ectodermal ridge
relationship: end ZFS:0000037 ! larval:day 5
relationship: part_of ZFA:0000040 ! median fin fold
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000718
name: epaxial region somite 27
namespace: zebrafish_anatomy
def: "The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000718
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000931 ! myotome somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000719
name: slow muscle cell somite 21
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 21" EXACT PLURAL []
xref: TAO:0000719
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000929 ! myotome somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000720
name: slow muscle cell somite 24
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 24" EXACT PLURAL []
xref: TAO:0000720
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000930 ! myotome somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000721
name: slow muscle cell somite 27
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 27" EXACT PLURAL []
xref: TAO:0000721
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000931 ! myotome somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000722
name: slow muscle cell somite 3
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 3" EXACT PLURAL []
xref: TAO:0000722
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000932 ! myotome somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000723
name: slow muscle cell somite 5
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 5" EXACT PLURAL []
xref: TAO:0000723
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000933 ! myotome somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000724
name: slow muscle cell somite 8
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 8" EXACT PLURAL []
xref: TAO:0000724
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000934 ! myotome somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000725
name: somite 11
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000725
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000726
name: somite 14
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000726
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000727
name: somite 17
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000727
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000728
name: somite 2
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000728
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000729
name: epaxial region somite 3
namespace: zebrafish_anatomy
def: "The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000729
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000932 ! myotome somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000730
name: somite 23
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000730
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000731
name: somite 27
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000731
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000732
name: somite 3
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000732
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000733
name: somite 7
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000733
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000734
name: preural vertebra
namespace: zebrafish_anatomy
def: "Vertebra which are the three most posterior vertebra supporting the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "caudal fin vertebra" EXACT []
synonym: "specialized centra/vertebrae" EXACT PLURAL []
xref: TAO:0000734
is_a: ZFA:0000326 ! caudal vertebra
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0000735
name: hemal postzygapophysis
namespace: zebrafish_anatomy
def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "haemal postzygapophysis" EXACT []
synonym: "hemal postzygapophyses" EXACT PLURAL []
synonym: "hemal postzygopophysis" EXACT []
xref: TAO:0000735
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000519 ! hemal arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000737
name: cranium
namespace: zebrafish_anatomy
def: "Skeletal system that is part of the head, including the splanchnocranium, chondrocranium, and dermatocranium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cranial skeleton" EXACT []
xref: TAO:0000737
is_a: ZFA:0000434 ! skeletal system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000738
name: dorsal oblique extraocular muscle
namespace: zebrafish_anatomy
def: "Extraocular muscle innervated by the trochlear nerve.  The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish.   The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles.   All the oblique extraocular muscles originate together from the anterior ethmoid plate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110512-18, ZFIN:ZDB-PUB-111205-9]
comment: Mature form at Larval:Protruding-mouth.
synonym: "dorsal oblique extraocular muscles" EXACT PLURAL []
synonym: "superior oblique muscle" EXACT [ZFIN:ZDB-PUB-110512-18]
xref: TAO:0000738
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000511 ! extraocular musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000739
name: epaxial region somite 11
namespace: zebrafish_anatomy
def: "The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000739
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000801 ! myotome somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000740
name: epaxial region somite 5
namespace: zebrafish_anatomy
def: "The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000740
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000933 ! myotome somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000741
name: epaxial region somite 14
namespace: zebrafish_anatomy
def: "The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000741
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000044 ! myotome somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000742
name: epaxial region somite 17
namespace: zebrafish_anatomy
def: "The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000742
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001015 ! myotome somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000743
name: epaxial region somite 2
namespace: zebrafish_anatomy
def: "The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000743
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001016 ! myotome somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000744
name: epaxial region somite 22
namespace: zebrafish_anatomy
def: "The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000744
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001017 ! myotome somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000745
name: epaxial region somite 25
namespace: zebrafish_anatomy
def: "The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000745
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001018 ! myotome somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000746
name: epaxial region somite 28
namespace: zebrafish_anatomy
def: "The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000746
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001019 ! myotome somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000747
name: epaxial region somite 30
namespace: zebrafish_anatomy
def: "The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000747
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001020 ! myotome somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000748
name: epaxial region somite 6
namespace: zebrafish_anatomy
def: "The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000748
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001021 ! myotome somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000749
name: epaxial region somite 9
namespace: zebrafish_anatomy
def: "The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000749
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001022 ! myotome somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000750
name: fast muscle cell somite 10
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 10." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 10" EXACT PLURAL []
synonym: "fast muscle fiber somite 10" EXACT []
xref: TAO:0000750
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001013 ! myotome somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000751
name: epaxial region somite 8
namespace: zebrafish_anatomy
def: "The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000751
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000934 ! myotome somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000752
name: fast muscle cell somite 13
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 13." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 13" EXACT PLURAL []
synonym: "fast muscle fiber somite 13" EXACT []
xref: TAO:0000752
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001014 ! myotome somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000753
name: fast muscle cell somite 16
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 16." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 16" EXACT PLURAL []
synonym: "fast muscle fiber somite 16" EXACT []
xref: TAO:0000753
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000927 ! myotome somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000754
name: fast muscle cell somite 19
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 19." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 19" EXACT PLURAL []
synonym: "fast muscle fiber somite 19" EXACT []
xref: TAO:0000754
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000928 ! myotome somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000755
name: fast muscle cell somite 21
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 21." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 21" EXACT PLURAL []
synonym: "fast muscle fiber somite 21" EXACT []
xref: TAO:0000755
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000929 ! myotome somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000756
name: fast muscle cell somite 24
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 24." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 24" EXACT PLURAL []
synonym: "fast muscle fiber somite 24" EXACT []
xref: TAO:0000756
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000930 ! myotome somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000757
name: fast muscle cell somite 27
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 27." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 27" EXACT PLURAL []
synonym: "fast muscle fiber somite 27" EXACT []
xref: TAO:0000757
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000931 ! myotome somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000758
name: fast muscle cell somite 3
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 3." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 3" EXACT PLURAL []
synonym: "fast muscle fiber somite 3" EXACT []
xref: TAO:0000758
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000932 ! myotome somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000759
name: fast muscle cell somite 5
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 5." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 5" EXACT PLURAL []
synonym: "fast muscle fiber somite 5" EXACT []
xref: TAO:0000759
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000933 ! myotome somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000760
name: fast muscle cell somite 8
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 8." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 8" EXACT PLURAL []
synonym: "fast muscle fiber somite 8" EXACT []
xref: TAO:0000760
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000934 ! myotome somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000761
name: basal plate midbrain region
namespace: zebrafish_anatomy
def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ISBN:0444517383, ZFIN:ZDB-PUB-961014-576]
synonym: "floor plate midbrain" RELATED []
synonym: "floorplate midbrain" RELATED []
xref: TAO:0000761
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0007039 ! midbrain neural tube
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000762
name: facio-acoustic neural crest
namespace: zebrafish_anatomy
def: "Cranial neural crest that gives rise to the facio-acoustic ganglion." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "facio acoustic neural crest" EXACT []
xref: TAO:0000762
is_a: ZFA:0001194 ! cranial neural crest
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000763
name: floor plate rhombomere 2
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 2." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r2" EXACT []
synonym: "floorplate r2" EXACT []
xref: TAO:0000763
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000764
name: floor plate rhombomere 5
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 5." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r5" EXACT []
synonym: "floorplate r5" EXACT []
xref: TAO:0000764
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000765
name: floor plate rhombomere 8
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 8." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r8" EXACT []
synonym: "floorplate r8" EXACT []
xref: TAO:0000765
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000153 ! rhombomere 8
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000766
name: granular layer valvula cerebelli
namespace: zebrafish_anatomy
def: "Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000766
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000767
name: hypaxial region somite 11
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000767
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000801 ! myotome somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000768
name: hypaxial region somite 14
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000768
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000044 ! myotome somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000769
name: hypaxial region somite 17
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000769
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001015 ! myotome somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000770
name: hypaxial region somite 2
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000770
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001016 ! myotome somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000771
name: hypaxial region somite 22
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000771
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001017 ! myotome somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000772
name: hypaxial region somite 25
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000772
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001018 ! myotome somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000773
name: fast muscle cell somite 12
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 12." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 12" EXACT PLURAL []
synonym: "fast muscle fiber somite 12" EXACT []
xref: TAO:0000773
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000926 ! myotome somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000774
name: hypaxial region somite 28
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000774
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001019 ! myotome somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000775
name: hypaxial region somite 30
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000775
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001020 ! myotome somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000776
name: hypaxial region somite 6
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000776
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001021 ! myotome somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000777
name: hypaxial region somite 9
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000777
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001022 ! myotome somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000778
name: spinal cord interneuron
namespace: zebrafish_anatomy
def: "A CNS interneuron located in the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737]
subset: cell_slim
synonym: "interneurons spinal cord" EXACT PLURAL []
xref: CL:0005000
xref: TAO:0000778
is_a: ZFA:0009191 ! CNS interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000779
name: lateral forebrain bundle telencephalon
namespace: zebrafish_anatomy
def: "Portion of the lateral forebrain bundle that lies in the telencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "lateral forebrain bundles telencephalon" EXACT PLURAL []
xref: TAO:0000779
is_a: ZFA:0000597 ! telencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007012 ! lateral forebrain bundle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000780
name: lateral wall diencephalic region
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the diencephalic region of the neural tube." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "lateral wall diencephalon" EXACT []
xref: TAO:0000780
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000781
name: lateral wall rhombomere 1
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000781
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000782
name: lateral wall rhombomere 4
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000782
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000783
name: lateral wall rhombomere 7
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000783
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000949 ! rhombomere 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000784
name: fast muscle cell somite 15
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 15." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 15" EXACT PLURAL []
synonym: "fast muscle fiber somite 15" EXACT []
xref: TAO:0000784
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000802 ! myotome somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000785
name: lateral wall telencephalic region
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the telencephalic region of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "lateral wall telencephalon" EXACT []
xref: TAO:0000785
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000786
name: medial migration pathway mesenchyme
namespace: zebrafish_anatomy
xref: TAO:0000786
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000999 ! mesenchyme derived from trunk neural crest
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000787
name: mesenchyme derived from head neural crest
namespace: zebrafish_anatomy
xref: TAO:0000787
is_a: ZFA:0000113 ! head mesenchyme
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000788
name: mesenchyme dorsal fin
namespace: zebrafish_anatomy
def: "Mesenchyme part of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0000788
is_a: ZFA:0000393 ! mesenchyme
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001173 ! dorsal fin
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000789
name: mesoderm pectoral fin bud
namespace: zebrafish_anatomy
def: "Mesoderm that is part of the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "mesoderm pectoral fin buds" EXACT PLURAL []
xref: TAO:0000789
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000141 ! pectoral fin bud
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000790
name: muscle pioneer somite 10
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 10" EXACT PLURAL []
xref: TAO:0000790
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000974 ! somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000791
name: muscle pioneer somite 13
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 13." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 13" EXACT PLURAL []
xref: TAO:0000791
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000975 ! somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000792
name: muscle pioneer somite 16
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 16." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 16" EXACT PLURAL []
xref: TAO:0000792
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000976 ! somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000793
name: muscle pioneer somite 19
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 19." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 19" EXACT PLURAL []
xref: TAO:0000793
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000977 ! somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000794
name: muscle pioneer somite 22
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 22." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 22" EXACT PLURAL []
xref: TAO:0000794
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000978 ! somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000795
name: fast muscle cell somite 18
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 18." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 18" EXACT PLURAL []
synonym: "fast muscle fiber somite 18" EXACT []
xref: TAO:0000795
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000803 ! myotome somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000796
name: muscle pioneer somite 25
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 25." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 25" EXACT PLURAL []
xref: TAO:0000796
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000980 ! somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000797
name: muscle pioneer somite 28
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 28." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 28" EXACT PLURAL []
xref: TAO:0000797
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000856 ! somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000798
name: muscle pioneer somite 30
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 30." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 30" EXACT PLURAL []
xref: TAO:0000798
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000157 ! somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000799
name: muscle pioneer somite 6
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 6" EXACT PLURAL []
xref: TAO:0000799
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000982 ! somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000800
name: muscle pioneer somite 9
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 9" EXACT PLURAL []
xref: TAO:0000800
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000983 ! somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000801
name: myotome somite 11
namespace: zebrafish_anatomy
def: "Portion of somite 11 that gives rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000801
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000725 ! somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000802
name: myotome somite 15
namespace: zebrafish_anatomy
def: "Portion of somite 15 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000802
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000852 ! somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000803
name: myotome somite 18
namespace: zebrafish_anatomy
def: "Portion of somite 18 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000803
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000853 ! somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000804
name: myotome somite 20
namespace: zebrafish_anatomy
def: "Portion of somite 20 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000804
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000156 ! somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000805
name: myotome somite 23
namespace: zebrafish_anatomy
def: "Portion of somite 23 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000805
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000730 ! somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000806
name: fast muscle cell somite 20
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 20." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 20" EXACT PLURAL []
synonym: "fast muscle fiber somite 20" EXACT []
xref: TAO:0000806
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000804 ! myotome somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000807
name: myotome somite 26
namespace: zebrafish_anatomy
def: "Portion of somite 26 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000807
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000074 ! somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000808
name: myotome somite 29
namespace: zebrafish_anatomy
def: "Portion of somite 29 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000808
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000981 ! somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000809
name: myotome somite 4
namespace: zebrafish_anatomy
def: "Portion of somite 4 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000809
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000857 ! somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000810
name: myotome somite 7
namespace: zebrafish_anatomy
def: "Portion of somite 7 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
xref: TAO:0000810
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000733 ! somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000811
name: neural crest diencephalon
namespace: zebrafish_anatomy
def: "Cranial neural crest that is part of the diencephalon." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "diencephalic neural crest" EXACT []
xref: TAO:0000811
is_a: ZFA:0001194 ! cranial neural crest
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000812
name: neural crest telencephalon
namespace: zebrafish_anatomy
def: "Cranial neural crest that is part of the telencephalon." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0000812
is_a: ZFA:0001194 ! cranial neural crest
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000813
name: infraorbital lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast infraorbital" EXACT []
synonym: "neuromasts infraorbital" EXACT PLURAL []
xref: TAO:0000813
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000524 ! infraorbital lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000814
name: opercular lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast opercular" EXACT []
synonym: "neuromasts opercular" EXACT PLURAL []
xref: TAO:0000814
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000424 ! opercular lateral line
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0000815
name: nucleus of the medial longitudinal fasciculus medulla oblongata
namespace: zebrafish_anatomy
xref: TAO:0000815
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000816
name: oral epithelium
namespace: zebrafish_anatomy
def: "The epithelium that lines the oral cavity.  The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24]
xref: TAO:0000816
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000590 ! oral region
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0000817
name: fast muscle cell somite 23
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 23." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 23" EXACT PLURAL []
synonym: "fast muscle fiber somite 23" EXACT []
xref: TAO:0000817
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000805 ! myotome somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000818
name: vagal neural crest
namespace: zebrafish_anatomy
def: "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "post-otic neural crest" EXACT []
xref: TAO:0000818
is_a: ZFA:0000045 ! neural crest
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000819
name: postcommissural nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali, nucleus postcommissuralis" EXACT []
synonym: "postcommissural nucleus of V" EXACT []
xref: TAO:0000819
is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000820
name: presumptive neuron neural tube
namespace: zebrafish_anatomy
comment: This term was obsoleted because we could not determine if it was a presumptive neuron part of the neural tube or a neuron part of the presumptive neural tube.
synonym: "presumptive neurons neural tube" EXACT PLURAL []
xref: TAO:0000820
is_obsolete: true

[Term]
id: ZFA:0000821
name: primary neuron hindbrain
namespace: zebrafish_anatomy
subset: cell_slim
synonym: "primary neurons hindbrain" EXACT PLURAL []
xref: TAO:0000821
is_a: ZFA:0009242 ! primary neuron
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000822
name: rhombomere 2
namespace: zebrafish_anatomy
def: "Hindbrain segment or neuromere posterior to rhombomere 1." [ZFIN:ZDB-PUB-961014-576]
synonym: "r2" EXACT []
xref: TAO:0000822
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001208 ! presumptive rhombomere 2
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000823
name: rhombomere 5
namespace: zebrafish_anatomy
def: "Hindbrain segment or neuromere posterior to rhombomere 4." [ZFIN:ZDB-PUB-961014-576]
synonym: "r5" EXACT []
xref: TAO:0000823
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001211 ! presumptive rhombomere 5
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000824
name: roof plate rhombomere 2
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000824
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000825
name: roof plate rhombomere 6
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000825
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000826
name: central nucleus torus semicircularis
namespace: zebrafish_anatomy
def: "Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "central nucleus of semicircular torus" EXACT []
synonym: "nucleus centralis tori semicircularis" EXACT []
xref: TAO:0000826
is_a: ZFA:0001665 ! midbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000599 ! torus semicircularis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000827
name: fast muscle cell somite 26
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 26." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 26" EXACT PLURAL []
synonym: "fast muscle fiber somite 26" EXACT []
xref: TAO:0000827
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000807 ! myotome somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000828
name: roof plate rhombomere 5
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000828
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000829
name: sclerotome somite 11
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000829
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000725 ! somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000830
name: sclerotome somite 14
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000830
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000726 ! somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000831
name: sclerotome somite 17
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000831
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000727 ! somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000832
name: sclerotome somite 2
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000832
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000728 ! somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000833
name: sclerotome somite 22
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000833
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000978 ! somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000834
name: sclerotome somite 25
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000834
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000980 ! somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000835
name: sclerotome somite 28
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000835
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000856 ! somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000836
name: sclerotome somite 30
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000836
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000157 ! somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000837
name: sclerotome somite 6
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000837
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000982 ! somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000838
name: fast muscle cell somite 29
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 29." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 29" EXACT PLURAL []
synonym: "fast muscle fiber somite 29" EXACT []
xref: TAO:0000838
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000808 ! myotome somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000839
name: sclerotome somite 9
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000839
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000983 ! somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000840
name: slow muscle cell somite 11
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 11" EXACT PLURAL []
xref: TAO:0000840
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000801 ! myotome somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000841
name: slow muscle cell somite 14
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 14" EXACT PLURAL []
xref: TAO:0000841
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000044 ! myotome somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000842
name: slow muscle cell somite 17
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 17" EXACT PLURAL []
xref: TAO:0000842
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001015 ! myotome somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000843
name: slow muscle cell somite 2
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 2" EXACT PLURAL []
xref: TAO:0000843
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001016 ! myotome somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000844
name: slow muscle cell somite 22
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 22" EXACT PLURAL []
xref: TAO:0000844
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001017 ! myotome somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000845
name: slow muscle cell somite 25
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 25" EXACT PLURAL []
xref: TAO:0000845
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001018 ! myotome somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000846
name: slow muscle cell somite 28
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 28" EXACT PLURAL []
xref: TAO:0000846
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001019 ! myotome somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000847
name: slow muscle cell somite 30
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 30" EXACT PLURAL []
xref: TAO:0000847
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001020 ! myotome somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000848
name: slow muscle cell somite 6
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 6" EXACT PLURAL []
xref: TAO:0000848
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001021 ! myotome somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000849
name: fast muscle cell somite 4
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 4." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 4" EXACT PLURAL []
synonym: "fast muscle fiber somite 4" EXACT []
xref: TAO:0000849
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000809 ! myotome somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000850
name: slow muscle cell somite 9
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 9" EXACT PLURAL []
xref: TAO:0000850
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001022 ! myotome somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000851
name: somite 12
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000851
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000852
name: somite 15
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000852
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000853
name: somite 18
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000853
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000854
name: somite 21
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000854
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000855
name: somite 24
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000855
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000856
name: somite 28
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000856
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000857
name: somite 4
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000857
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000858
name: somite 8
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000858
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000859
name: specialized hemal arch and spine
namespace: zebrafish_anatomy
def: "Modified hemal arches and spines that support the caudal fin.  In developing fish they articulate with preural 1, ural1 and ural2; in adults they articulate with the urostyle." [ZFIN:ZDB-PUB-011008-1]
synonym: "ha(pu)" EXACT []
synonym: "hemal arch (preural)" EXACT [ZFIN:ZDB-PUB-011008-1]
synonym: "specialized haemal arch and spine" EXACT []
synonym: "specialized hemal arches and spines" EXACT PLURAL []
xref: TAO:0000859
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000860
name: fast muscle cell somite 7
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 7." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 7" EXACT PLURAL []
synonym: "fast muscle fiber somite 7" EXACT []
xref: TAO:0000860
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000810 ! myotome somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000861
name: ventral oblique extraocular muscle
namespace: zebrafish_anatomy
def: "Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye.  The insertion point of the ventral oblique and the ventral rectus overlap in adult fish.  All the oblique extraocular muscles originate together from the anterior ethmoid plate.  The ventral oblique is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9]
comment: Mature form at Hatching:Pec-fin.
synonym: "inferior oblique muscle" EXACT [ZFIN:ZDB-PUB-110512-18]
synonym: "ventral oblique extraocular muscles" EXACT PLURAL []
xref: TAO:0000861
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000511 ! extraocular musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000862
name: caudal fin skeleton
namespace: zebrafish_anatomy
def: "Median fin skeleton supporting the caudal fin." [TAO:curator]
xref: TAO:0000862
is_a: ZFA:0001123 ! axial fin skeleton
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001058 ! caudal fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000863
name: dermatocranium
namespace: zebrafish_anatomy
def: "Anatomical cluster that is part of the cranium and composed of dermally derived bones." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dermal bone cranium" EXACT []
xref: TAO:0000863
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000864
name: epaxial region somite 1
namespace: zebrafish_anatomy
def: "The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000864
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000924 ! myotome somite 1
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000865
name: epaxial region somite 12
namespace: zebrafish_anatomy
def: "The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000865
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000926 ! myotome somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000866
name: epaxial region somite 15
namespace: zebrafish_anatomy
def: "The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000866
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000802 ! myotome somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000867
name: epaxial region somite 18
namespace: zebrafish_anatomy
def: "The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000867
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000803 ! myotome somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000868
name: epaxial region somite 20
namespace: zebrafish_anatomy
def: "The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000868
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000804 ! myotome somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000869
name: epaxial region somite 23
namespace: zebrafish_anatomy
def: "The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000869
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000805 ! myotome somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000870
name: epaxial region somite 26
namespace: zebrafish_anatomy
def: "The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000870
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000807 ! myotome somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000871
name: floor plate diencephalic region
namespace: zebrafish_anatomy
def: "Floor plate that is part of the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floorplate diencephalon" EXACT []
xref: TAO:0000871
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000022 ! floor plate
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000872
name: epaxial region somite 29
namespace: zebrafish_anatomy
def: "The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000872
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000808 ! myotome somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000873
name: epaxial region somite 4
namespace: zebrafish_anatomy
def: "The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000873
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000809 ! myotome somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000874
name: epaxial region somite 7
namespace: zebrafish_anatomy
def: "The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000874
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000810 ! myotome somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000875
name: facial neural crest
namespace: zebrafish_anatomy
def: "Cranial neural crest that is part of the facial region." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0000875
is_obsolete: true
consider: ZFA:0001194

[Term]
id: ZFA:0000876
name: fast muscle cell somite 11
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 11." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 11" EXACT PLURAL []
synonym: "fast muscle fiber somite 11" EXACT []
xref: TAO:0000876
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000801 ! myotome somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000877
name: fast muscle cell somite 14
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 14." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 14" EXACT PLURAL []
synonym: "fast muscle fiber somite 14" EXACT []
xref: TAO:0000877
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000044 ! myotome somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000878
name: fast muscle cell somite 17
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 17." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 17" EXACT PLURAL []
synonym: "fast muscle fiber somite 17" EXACT []
xref: TAO:0000878
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001015 ! myotome somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000879
name: fast muscle cell somite 2
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 2." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 2" EXACT PLURAL []
synonym: "fast muscle fiber somite 2" EXACT []
xref: TAO:0000879
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001016 ! myotome somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000880
name: fast muscle cell somite 22
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 22." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 22" EXACT PLURAL []
synonym: "fast muscle fiber somite 22" EXACT []
xref: TAO:0000880
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001017 ! myotome somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000881
name: fast muscle cell somite 25
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 25." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 25" EXACT PLURAL []
synonym: "fast muscle fiber somite 25" EXACT []
xref: TAO:0000881
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001018 ! myotome somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000882
name: floor plate rhombomere 1
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r1" EXACT []
xref: TAO:0000882
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000883
name: fast muscle cell somite 28
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 28." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 28" EXACT PLURAL []
synonym: "fast muscle fiber somite 28" EXACT []
xref: TAO:0000883
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001019 ! myotome somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000884
name: fast muscle cell somite 30
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 30." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 30" EXACT PLURAL []
synonym: "fast muscle fiber somite 30" EXACT []
xref: TAO:0000884
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001020 ! myotome somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000885
name: fast muscle cell somite 6
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 6." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 6" EXACT PLURAL []
synonym: "fast muscle fiber somite 6" EXACT []
xref: TAO:0000885
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001021 ! myotome somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000886
name: fast muscle cell somite 9
namespace: zebrafish_anatomy
def: "Fast muscle cell located in somite 9." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "fast muscle cells somite 9" EXACT PLURAL []
synonym: "fast muscle fiber somite 9" EXACT []
xref: TAO:0000886
is_a: ZFA:0009117 ! fast muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001022 ! myotome somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000887
name: floor plate neural rod
namespace: zebrafish_anatomy
def: "Floor plate that is part of the neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880]
synonym: "floorplate neural rod" EXACT []
xref: TAO:0000887
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000026 ! segmentation:14-19 somites
relationship: part_of ZFA:0000022 ! floor plate
relationship: part_of ZFA:0000133 ! neural rod
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000888
name: floor plate rhombomere 3
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r3" EXACT []
synonym: "floorplate r3" EXACT []
xref: TAO:0000888
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000889
name: floor plate rhombomere 6
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 6." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r6" EXACT []
synonym: "floorplate r6" EXACT []
xref: TAO:0000889
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000890
name: floor plate spinal cord region
namespace: zebrafish_anatomy
def: "Floor plate that is part of the spinal cord." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880]
synonym: "floorplate spinal cord" EXACT []
xref: TAO:0000890
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001434 ! floor plate neural tube
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000022 ! floor plate
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000891
name: hypaxial region somite 1
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000891
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000924 ! myotome somite 1
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000892
name: hypaxial region somite 12
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000892
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000926 ! myotome somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000893
name: floor plate rhombomere 4
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 4." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r4" EXACT []
synonym: "floorplate r4" EXACT []
xref: TAO:0000893
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000894
name: hypaxial region somite 15
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000894
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000802 ! myotome somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000895
name: hypaxial region somite 18
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000895
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000803 ! myotome somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000896
name: hypaxial region somite 20
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000896
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000804 ! myotome somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000897
name: hypaxial region somite 23
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000897
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000805 ! myotome somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000898
name: hypaxial region somite 26
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000898
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000807 ! myotome somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000899
name: hypaxial region somite 29
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000899
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000808 ! myotome somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000900
name: hypaxial region somite 4
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000900
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000809 ! myotome somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000901
name: hypaxial region somite 7
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000901
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000810 ! myotome somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000902
name: hypural muscle
namespace: zebrafish_anatomy
def: "Musculature associated with the hypurals." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "hypural muscles" EXACT PLURAL []
xref: TAO:0000902
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000628 ! caudal fin musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000903
name: interpeduncular nucleus tegmentum
namespace: zebrafish_anatomy
comment: ZDB-PUB-010601-11 says there are 4 sub-nuclei.
xref: TAO:0000903
is_a: ZFA:0005577 ! tegmental nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000904
name: floor plate rhombomere 7
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomere 7." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate r7" EXACT []
synonym: "floorplate r7" EXACT []
xref: TAO:0000904
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000949 ! rhombomere 7
relationship: part_of ZFA:0001258 ! floor plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000905
name: lateral mesenchyme derived from mesoderm
namespace: zebrafish_anatomy
xref: TAO:0000905
is_a: ZFA:0000081 ! trunk mesenchyme
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000906
name: lateral wall midbrain region
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the midbrain region of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "lateral wall midbrain" EXACT []
xref: TAO:0000906
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000907
name: lateral wall rhombomere 2
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000907
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000908
name: lateral wall rhombomere 5
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000908
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000909
name: lateral wall rhombomere 8
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000909
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000153 ! rhombomere 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000910
name: medial forebrain bundle telencephalon
namespace: zebrafish_anatomy
synonym: "medial forebrain bundles telencephalon" EXACT PLURAL []
xref: TAO:0000910
is_a: ZFA:0000597 ! telencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005111 ! medial forebrain bundle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000911
name: medial pterygiophores dorsal fin
namespace: zebrafish_anatomy
is_obsolete: true
replaced_by: ZFA:0001647

[Term]
id: ZFA:0000912
name: mesenchyme median fin fold
namespace: zebrafish_anatomy
def: "Mesenchyme part of median fin fold." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000912
is_a: ZFA:0000393 ! mesenchyme
relationship: end ZFS:0000037 ! larval:day 5
relationship: part_of ZFA:0000040 ! median fin fold
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0000913
name: molecular layer valvula cerebelli
namespace: zebrafish_anatomy
def: "Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000913
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000914
name: floor plate telencephalic region
namespace: zebrafish_anatomy
def: "Floor plate that is part of the telencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floorplate telencephalon" EXACT []
xref: TAO:0000914
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000022 ! floor plate
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000915
name: muscle pioneer somite 11
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 11." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 11" EXACT PLURAL []
xref: TAO:0000915
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000725 ! somite 11
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000916
name: muscle pioneer somite 14
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 14." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 14" EXACT PLURAL []
xref: TAO:0000916
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000726 ! somite 14
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000917
name: muscle pioneer somite 17
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 17." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 17" EXACT PLURAL []
xref: TAO:0000917
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000727 ! somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000918
name: muscle pioneer somite 20
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 20." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 20" EXACT PLURAL []
xref: TAO:0000918
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000156 ! somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000919
name: muscle pioneer somite 23
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 23." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 23" EXACT PLURAL []
xref: TAO:0000919
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000730 ! somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000920
name: muscle pioneer somite 26
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 26." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 26" EXACT PLURAL []
xref: TAO:0000920
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000074 ! somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000921
name: muscle pioneer somite 29
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 29." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 29" EXACT PLURAL []
xref: TAO:0000921
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000981 ! somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000922
name: muscle pioneer somite 4
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 4" EXACT PLURAL []
xref: TAO:0000922
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000857 ! somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000923
name: muscle pioneer somite 7
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 7" EXACT PLURAL []
xref: TAO:0000923
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000733 ! somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000924
name: myotome somite 1
namespace: zebrafish_anatomy
def: "Portion of somite 1 that gives rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000924
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000072 ! somite 1
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000925
name: hypaxial region somite 10
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000925
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001013 ! myotome somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000926
name: myotome somite 12
namespace: zebrafish_anatomy
def: "Portion of somite 12 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000926
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000851 ! somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000927
name: myotome somite 16
namespace: zebrafish_anatomy
def: "Portion of somite 16 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000927
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000976 ! somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000928
name: myotome somite 19
namespace: zebrafish_anatomy
def: "Portion of somite 19 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000928
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000977 ! somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000929
name: myotome somite 21
namespace: zebrafish_anatomy
def: "Portion of somite 21 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000929
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000854 ! somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000930
name: myotome somite 24
namespace: zebrafish_anatomy
def: "Portion of somite 24 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000930
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000855 ! somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000931
name: myotome somite 27
namespace: zebrafish_anatomy
def: "Portion of somite 27 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000931
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000731 ! somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000932
name: myotome somite 3
namespace: zebrafish_anatomy
def: "Portion of somite 3 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000932
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000732 ! somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000933
name: myotome somite 5
namespace: zebrafish_anatomy
def: "Portion of somite 5 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000933
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000073 ! somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000934
name: myotome somite 8
namespace: zebrafish_anatomy
def: "Portion of somite 8 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000934
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000858 ! somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000935
name: neural crest midbrain
namespace: zebrafish_anatomy
def: "Neural crest that is part of the midbrain." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "mesencephalic neural crest" EXACT [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0000935
is_a: ZFA:0001194 ! cranial neural crest
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000936
name: dorsal fin distal radial
namespace: zebrafish_anatomy
def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dorsal fin distal radials" EXACT PLURAL []
xref: TAO:0000936
is_a: ZFA:0001647 ! dorsal fin radial
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001419 ! dorsal fin pterygiophore
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000937
name: hypaxial region somite 13
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000937
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001014 ! myotome somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000938
name: central canal
namespace: zebrafish_anatomy
def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "canalis centralis" EXACT []
synonym: "neural lumen" EXACT []
xref: TAO:0000938
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: part_of ZFA:0001261 ! ventricular system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000939
name: middle lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast middle" EXACT []
synonym: "neuromasts middle" EXACT PLURAL []
xref: TAO:0000939
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000344 ! middle lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0000940
name: posterior lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast posterior" EXACT []
synonym: "neuromasts posterior" EXACT PLURAL []
xref: TAO:0000940
is_a: ZFA:0000243 ! neuromast
relationship: develops_from ZFA:0001157 ! posterior lateral line primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000944 ! posterior lateral line
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000941
name: nucleus of the medial longitudinal fasciculus synencephalon
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0000941
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: develops_from ZFA:0005871 ! region of the nucleus of the medial longitudinal fascicle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000293 ! synencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000943
name: pectoral fin skeleton
namespace: zebrafish_anatomy
def: "Skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:curator]
xref: TAO:0000943
is_a: ZFA:0000027 ! paired fin skeleton
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001161 ! pectoral fin
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000944
name: posterior lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva.  The posterior lateral line runs along the horizontal myoseptum from the otic vessicle to the caudal fin.  Lateral lines form a sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-110811-14]
synonym: "midbody lateral line" RELATED []
synonym: "midtrunk line" RELATED []
synonym: "pll" EXACT []
xref: TAO:0000944
is_a: ZFA:0001469 ! lateral line
relationship: develops_from ZFA:0001157 ! posterior lateral line primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001471 ! posterior lateral line system
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0000946
name: hypaxial region somite 16
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000946
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000927 ! myotome somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000947
name: dorsal fin proximal radial
namespace: zebrafish_anatomy
def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dorsal fin proximal radials" EXACT PLURAL []
xref: TAO:0000947
is_a: ZFA:0001647 ! dorsal fin radial
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001419 ! dorsal fin pterygiophore
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0000948
name: rhombomere 3
namespace: zebrafish_anatomy
def: "Hindbrain segment or neuromere posterior to rhombomere 2." [ZFIN:ZDB-PUB-961014-576]
synonym: "r3" EXACT []
xref: TAO:0000948
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001213 ! presumptive rhombomere 3
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000949
name: rhombomere 7
namespace: zebrafish_anatomy
def: "Hindbrain segment or neuromere posterior to rhombomere 6." [ZFIN:ZDB-PUB-961014-576]
synonym: "r7" EXACT []
xref: TAO:0000949
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001209 ! presumptive rhombomere 7
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000950
name: roof plate rhombomere 3
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000950
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000951
name: roof plate rhombomere 7
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000951
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000949 ! rhombomere 7
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000952
name: sclerotome somite 1
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000952
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000072 ! somite 1
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0000953
name: sclerotome somite 12
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000953
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000851 ! somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000954
name: sclerotome somite 15
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000954
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000852 ! somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000955
name: sclerotome somite 18
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000955
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000853 ! somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000956
name: sclerotome somite 20
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000956
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000156 ! somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000957
name: hypaxial region somite 19
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000957
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000928 ! myotome somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000958
name: sclerotome somite 23
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000958
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000730 ! somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000959
name: sclerotome somite 26
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000959
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000074 ! somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000960
name: sclerotome somite 29
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000960
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000981 ! somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000961
name: sclerotome somite 4
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000961
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000857 ! somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000962
name: sclerotome somite 7
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0000962
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000733 ! somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000963
name: slow muscle cell somite 1
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961219-12]
subset: cell_slim
synonym: "slow muscle cells somite 1" EXACT PLURAL []
xref: TAO:0000963
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000924 ! myotome somite 1
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000964
name: slow muscle cell somite 12
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 12" EXACT PLURAL []
xref: TAO:0000964
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000926 ! myotome somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000965
name: slow muscle cell somite 15
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 15" EXACT PLURAL []
xref: TAO:0000965
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000802 ! myotome somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000966
name: slow muscle cell somite 18
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 18" EXACT PLURAL []
xref: TAO:0000966
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000803 ! myotome somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000967
name: slow muscle cell somite 20
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 20" EXACT PLURAL []
xref: TAO:0000967
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000804 ! myotome somite 20
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000968
name: hypaxial region somite 21
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000968
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000929 ! myotome somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000969
name: slow muscle cell somite 23
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 23" EXACT PLURAL []
xref: TAO:0000969
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000805 ! myotome somite 23
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000970
name: slow muscle cell somite 26
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 26" EXACT PLURAL []
xref: TAO:0000970
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000807 ! myotome somite 26
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000971
name: slow muscle cell somite 29
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 29" EXACT PLURAL []
xref: TAO:0000971
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000808 ! myotome somite 29
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000972
name: slow muscle cell somite 4
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 4" EXACT PLURAL []
xref: TAO:0000972
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000809 ! myotome somite 4
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000973
name: slow muscle cell somite 7
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 7" EXACT PLURAL []
xref: TAO:0000973
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000810 ! myotome somite 7
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000974
name: somite 10
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000974
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000975
name: somite 13
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000975
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000976
name: somite 16
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000976
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000977
name: somite 19
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000977
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0000978
name: somite 22
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000978
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000979
name: hypaxial region somite 24
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000979
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000930 ! myotome somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000980
name: somite 25
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000980
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0000981
name: somite 29
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000981
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0000982
name: somite 6
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000982
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000983
name: somite 9
namespace: zebrafish_anatomy
def: "Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000983
is_a: ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000984
name: superior reticular formation tegmentum
namespace: zebrafish_anatomy
xref: TAO:0000984
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000160 ! tegmentum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000985
name: ventral rhombencephalic commissure medulla oblongata
namespace: zebrafish_anatomy
xref: TAO:0000985
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000986
name: hypaxial region somite 27
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000986
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000931 ! myotome somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000987
name: hypaxial region somite 3
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000987
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000932 ! myotome somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000988
name: hypaxial region somite 5
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000988
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000933 ! myotome somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000989
name: hypaxial region somite 8
namespace: zebrafish_anatomy
def: "The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000989
is_a: ZFA:0001085 ! hypaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000934 ! myotome somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000990
name: intermediate mesenchyme
namespace: zebrafish_anatomy
xref: TAO:0000990
is_a: ZFA:0000081 ! trunk mesenchyme
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000991
name: epaxial region somite 10
namespace: zebrafish_anatomy
def: "The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0000991
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001013 ! myotome somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000992
name: lateral migration pathway mesenchyme
namespace: zebrafish_anatomy
xref: TAO:0000992
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000999 ! mesenchyme derived from trunk neural crest
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000993
name: lateral wall neural rod
namespace: zebrafish_anatomy
def: "Portion of tissue located at either side of the neural rod." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000993
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000026 ! segmentation:14-19 somites
relationship: part_of ZFA:0000133 ! neural rod
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000994
name: lateral wall rhombomere 3
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000994
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000995
name: lateral wall rhombomere 6
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000995
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0000996
name: lateral wall spinal cord
namespace: zebrafish_anatomy
def: "Multi-tissue structure forming the sides of the lumen of the spinal cord." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0000996
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0000997
name: medial funicular nucleus trigeminal nucleus
namespace: zebrafish_anatomy
def: "Sensory trigeminal nucleus located at the end of the medulla oblongata." [ZFIN:ZDB-PUB-961014-1280]
synonym: "medial funicular nucleus trigeminal nuclei" EXACT PLURAL []
xref: TAO:0000997
is_a: ZFA:0000433 ! sensory trigeminal nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0000998
name: mesenchyme derived from head mesoderm
namespace: zebrafish_anatomy
xref: TAO:0000998
is_a: ZFA:0000113 ! head mesenchyme
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0000999
name: mesenchyme derived from trunk neural crest
namespace: zebrafish_anatomy
xref: TAO:0000999
is_a: ZFA:0000081 ! trunk mesenchyme
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001000
name: mesenchyme pectoral fin
namespace: zebrafish_anatomy
def: "Mesenchyme that is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "mesenchyme pectoral fins" EXACT PLURAL []
xref: TAO:0001000
is_a: ZFA:0000393 ! mesenchyme
relationship: develops_from ZFA:0000789 ! mesoderm pectoral fin bud
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001161 ! pectoral fin
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001001
name: epaxial region somite 13
namespace: zebrafish_anatomy
def: "The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001001
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001014 ! myotome somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001002
name: peripheral motor axons
namespace: zebrafish_anatomy
comment: Consider post-composing ZFA:0009052 motor neuron with GO:0030424 axon
xref: TAO:0001002
is_obsolete: true

[Term]
id: ZFA:0001003
name: muscle pioneer somite 12
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 12." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 12" EXACT PLURAL []
xref: TAO:0001003
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000851 ! somite 12
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001004
name: muscle pioneer somite 15
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 15." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 15" EXACT PLURAL []
xref: TAO:0001004
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000852 ! somite 15
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001005
name: muscle pioneer somite 18
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 18." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 18" EXACT PLURAL []
xref: TAO:0001005
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000853 ! somite 18
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001006
name: muscle pioneer somite 21
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 21." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 21" EXACT PLURAL []
xref: TAO:0001006
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000854 ! somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001007
name: muscle pioneer somite 24
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 24." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 24" EXACT PLURAL []
xref: TAO:0001007
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000855 ! somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001008
name: muscle pioneer somite 27
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 27." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 27" EXACT PLURAL []
xref: TAO:0001008
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000731 ! somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001009
name: muscle pioneer somite 3
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 3" EXACT PLURAL []
xref: TAO:0001009
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000732 ! somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001010
name: muscle pioneer somite 5
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 5" EXACT PLURAL []
xref: TAO:0001010
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000073 ! somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001011
name: muscle pioneer somite 8
namespace: zebrafish_anatomy
def: "Muscle pioneer cell part of somite 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "muscle pioneers somite 8" EXACT PLURAL []
xref: TAO:0001011
is_a: ZFA:0001086 ! muscle pioneer
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000858 ! somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001012
name: epaxial region somite 16
namespace: zebrafish_anatomy
def: "The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001012
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000927 ! myotome somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001013
name: myotome somite 10
namespace: zebrafish_anatomy
def: "Portion of somite 10 that gives rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001013
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000974 ! somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001014
name: myotome somite 13
namespace: zebrafish_anatomy
def: "Portion of somite 13 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001014
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000975 ! somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001015
name: myotome somite 17
namespace: zebrafish_anatomy
def: "Portion of somite 17 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001015
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000727 ! somite 17
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001016
name: myotome somite 2
namespace: zebrafish_anatomy
def: "Portion of somite 2 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001016
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000728 ! somite 2
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001017
name: myotome somite 22
namespace: zebrafish_anatomy
def: "Portion of somite 22 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001017
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000978 ! somite 22
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001018
name: myotome somite 25
namespace: zebrafish_anatomy
def: "Portion of somite 25 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001018
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000980 ! somite 25
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001019
name: myotome somite 28
namespace: zebrafish_anatomy
def: "Portion of somite 28 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001019
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000856 ! somite 28
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001020
name: myotome somite 30
namespace: zebrafish_anatomy
def: "Portion of somite 30 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001020
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000157 ! somite 30
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001021
name: myotome somite 6
namespace: zebrafish_anatomy
def: "Portion of somite 6 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001021
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000982 ! somite 6
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001022
name: myotome somite 9
namespace: zebrafish_anatomy
def: "Portion of somite 9 that gives rise to body wall muscle masses." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001022
is_a: ZFA:0001056 ! myotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000983 ! somite 9
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001023
name: epaxial region somite 19
namespace: zebrafish_anatomy
def: "The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001023
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000928 ! myotome somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001024
name: trunk neural crest
namespace: zebrafish_anatomy
def: "Neural crest that is part of the trunk." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0001024
is_a: ZFA:0000045 ! neural crest
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001025
name: occipital lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast occipital" EXACT []
synonym: "neuromasts occipital" EXACT PLURAL []
xref: TAO:0001025
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000400 ! occipital lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0001026
name: supraorbital lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast supraorbital" EXACT []
synonym: "neuromasts supraorbital" EXACT PLURAL []
xref: TAO:0001026
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000443 ! supraorbital lateral line
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0001027
name: oral cavity
namespace: zebrafish_anatomy
def: "Space within the oral region." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "buccal cavity" EXACT []
synonym: "buccal chamber" EXACT []
xref: TAO:0001027
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000590 ! oral region
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001028
name: hypurapophysis
namespace: zebrafish_anatomy
def: "The paired bony lateral extensions off the parhypural." [ZFIN:ZDB-PUB-011008-1]
synonym: "hypurapophyses" EXACT PLURAL []
synonym: "parhypurapophysis" EXACT []
synonym: "parhypurapophysis process" EXACT []
xref: TAO:0001028
is_a: ZFA:0000859 ! specialized hemal arch and spine
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000438 ! parhypural
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001029
name: inner limiting membrane
namespace: zebrafish_anatomy
def: "Membrane on the apical surface of the retina.  The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]
synonym: "ILM" EXACT []
synonym: "inner limiting membranes" EXACT PLURAL []
xref: TAO:0001029
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001030
name: epaxial region somite 21
namespace: zebrafish_anatomy
def: "The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001030
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000929 ! myotome somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001031
name: rhombomere 1
namespace: zebrafish_anatomy
def: "Anteriormost hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576]
synonym: "r1" EXACT []
xref: TAO:0001031
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001207 ! presumptive rhombomere 1
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001032
name: rhombomere 4
namespace: zebrafish_anatomy
def: "Hindbrain segment or neuromere posterior to rhombomere 3." [ZFIN:ZDB-PUB-961014-576]
synonym: "r4" EXACT []
xref: TAO:0001032
is_a: ZFA:0001064 ! rhombomere
relationship: develops_from ZFA:0001212 ! presumptive rhombomere 4
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001033
name: roof plate rhombomere 1
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001033
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001034
name: roof plate rhombomere 4
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001034
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001035
name: roof plate rhombomere 8
namespace: zebrafish_anatomy
def: "Roof plate that is part of rhombomere 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001035
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000153 ! rhombomere 8
relationship: part_of ZFA:0001311 ! roof plate rhombomere region
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001036
name: sclerotome somite 10
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001036
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000974 ! somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001037
name: sclerotome somite 13
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001037
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000975 ! somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001038
name: sclerotome somite 16
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001038
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000976 ! somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001039
name: sclerotome somite 19
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001039
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000977 ! somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001040
name: epaxial region somite 24
namespace: zebrafish_anatomy
def: "The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001040
is_a: ZFA:0001084 ! epaxial myotome region
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000930 ! myotome somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001041
name: sclerotome somite 21
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001041
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000854 ! somite 21
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001042
name: sclerotome somite 24
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001042
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000855 ! somite 24
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001043
name: sclerotome somite 27
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001043
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000731 ! somite 27
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001044
name: sclerotome somite 3
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001044
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000732 ! somite 3
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001045
name: sclerotome somite 5
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001045
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000073 ! somite 5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001046
name: sclerotome somite 8
namespace: zebrafish_anatomy
def: "Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576, ZFIN:ZDB-PUB-970213-3]
xref: TAO:0001046
is_a: ZFA:0001080 ! sclerotome
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000858 ! somite 8
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001047
name: slow muscle cell somite 10
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 10" EXACT PLURAL []
xref: TAO:0001047
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001013 ! myotome somite 10
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001048
name: slow muscle cell somite 13
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 13" EXACT PLURAL []
xref: TAO:0001048
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001014 ! myotome somite 13
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001049
name: slow muscle cell somite 16
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 16" EXACT PLURAL []
xref: TAO:0001049
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000927 ! myotome somite 16
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001050
name: slow muscle cell somite 19
namespace: zebrafish_anatomy
def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "slow muscle cells somite 19" EXACT PLURAL []
xref: TAO:0001050
is_a: ZFA:0009116 ! slow muscle cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000928 ! myotome somite 19
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001051
name: caudal division of the internal carotid artery
namespace: zebrafish_anatomy
def: "Branch of the internal carotid artery that extends caudally along the sides of the midbrain and eventually drains into the basilar artery via the posterior communicating artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140605-9]
synonym: "CaDI" EXACT []
synonym: "posterior cerebral carotid artery" EXACT []
synonym: "posterior rami of the cerebral carotid artery" EXACT []
xref: TAO:0001051
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005081 ! internal carotid artery
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001052
name: primordial hindbrain channel
namespace: zebrafish_anatomy
def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "medial head vein" EXACT []
synonym: "PHBC" EXACT []
xref: TAO:0001052
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001053
name: primitive internal carotid artery
namespace: zebrafish_anatomy
def: "Artery that originates as rostral extensions of the paired lateral dorsal aorta. The primitive internal carotid artery splits to form caudal and cranial divisions. The primitive internal carotid artery is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "PICA" EXACT []
xref: TAO:0001053
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001054
name: lateral dorsal aorta
namespace: zebrafish_anatomy
def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "LDA" EXACT []
xref: TAO:0001054
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001055
name: pronephric duct opening
namespace: zebrafish_anatomy
def: "The juncture where the pronephric ducts empty into the cloaca." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pronephric duct openings" EXACT PLURAL []
synonym: "urogenital opening" RELATED [ZFIN:ZDB-PUB-060508-11]
xref: TAO:0001055
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000150 ! pronephric duct
relationship: part_of ZFA:0000330 ! cloacal chamber
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001056
name: myotome
namespace: zebrafish_anatomy
def: "Muscle that develops from somite and gives rise to body wall muscle masses." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576]
synonym: "myomeres" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001056
is_a: ZFA:0005145 ! muscle
relationship: develops_from ZFA:0000155 ! somite
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001057
name: intersegmental vein
namespace: zebrafish_anatomy
def: "Veins that connect the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. They form from primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins.  These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4]
synonym: "ISV" EXACT []
xref: TAO:0001057
is_a: ZFA:0000082 ! vein
is_a: ZFA:0001285 ! intersegmental vessel
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001058
name: caudal fin
namespace: zebrafish_anatomy
def: "Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines." [ZFIN:ZDB-PUB-011008-1]
synonym: "tail" EXACT []
synonym: "tail fin" EXACT []
xref: TAO:0001058
is_a: ZFA:0005597 ! median fin
relationship: develops_from ZFA:0001069 ! ventral fin fold
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001117 ! post-vent region
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001059
name: cranial division of the internal carotid artery
namespace: zebrafish_anatomy
def: "Caudal branch of the internal carotid artery that gives rise to the branches that supply the diencephalon and telencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140605-9]
synonym: "anterior cerebral carotid artery" EXACT []
synonym: "anterior rami of the cerebral carotid artery" EXACT []
synonym: "CrDI" EXACT []
synonym: "rostral division of the internal carotid artery" EXACT []
xref: TAO:0001059
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0005081 ! internal carotid artery
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001060
name: basidorsal
namespace: zebrafish_anatomy
def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "arcualia" RELATED []
xref: TAO:0001060
is_a: ZFA:0001457 ! postcranial axial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001061
name: intersegmental artery
namespace: zebrafish_anatomy
def: "Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries.  At early stages these vessels don't have venous or arterial markers.  They form from the primary sprouts from the dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4]
synonym: "intersegmental arteries" EXACT PLURAL []
xref: TAO:0001061
is_a: ZFA:0000005 ! artery
is_a: ZFA:0001285 ! intersegmental vessel
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001062
name: primitive mesencephalic artery
namespace: zebrafish_anatomy
def: "Artery that branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "PMsA" EXACT []
xref: TAO:0001062
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001063
name: posterior caudal vein
namespace: zebrafish_anatomy
xref: TAO:0001063
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0005037 ! post-vent vasculature
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001064
name: rhombomere
namespace: zebrafish_anatomy
def: "A segment of the developing hindbrain." [ZFIN:ZDB-PUB-961014-576]
synonym: "hindbrain segment" EXACT []
synonym: "neuromere" RELATED []
synonym: "rhombomeres" EXACT PLURAL []
xref: TAO:0001064
is_a: ZFA:0001328 ! neuromere
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001065
name: lateral mesoderm
namespace: zebrafish_anatomy
xref: TAO:0001065
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001066
name: neural arch
namespace: zebrafish_anatomy
def: "A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal arcocentrum" EXACT []
xref: TAO:0001066
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001060 ! basidorsal
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001189 ! vertebra
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001067
name: anterior cerebral vein
namespace: zebrafish_anatomy
def: "Vein that branches from the primordial hindbrain channel (PHBC) at 1.3 dpf. The primitive prosencephalic artery drains into the anterior cerebral vein (ACeV) as do the prosencephalic artery and the nasal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "ACeV" EXACT []
synonym: "rostral cerebral vein" EXACT []
xref: TAO:0001067
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001068
name: mesencephalic artery
namespace: zebrafish_anatomy
def: "Artery in the midbrain that develops from the proximal portion of the primitive mesencephalic artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "MsA" EXACT []
xref: TAO:0001068
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0001062 ! primitive mesencephalic artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001069
name: ventral fin fold
namespace: zebrafish_anatomy
def: "Region of the median fin fold that develops into the anal and caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anal fin fold" EXACT []
synonym: "tail fin fold" EXACT []
synonym: "ventral fin" EXACT []
xref: TAO:0001069
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000037 ! larval:day 5
relationship: part_of ZFA:0000040 ! median fin fold
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001070
name: presumptive pronephric mesoderm
namespace: zebrafish_anatomy
def: "Presumptive structure part of the intermediate mesoderm, that is fated to become pronephric mesoderm." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "nephron primordium" EXACT []
xref: TAO:0001070
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0001206 ! intermediate mesoderm
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001071
name: presumptive neural retina
namespace: zebrafish_anatomy
def: "Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "inner layer optic cup" EXACT []
synonym: "presumptive retinas" EXACT PLURAL []
xref: TAO:0001071
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001202 ! optic cup
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001072
name: thyroid follicle
namespace: zebrafish_anatomy
def: "Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme.  The follicles are not encapsulated by connective tissue." [ZFIN:ZDB-PUB-060517-11]
synonym: "thyroid follicles" EXACT PLURAL []
xref: TAO:0001072
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001081 ! thyroid primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001073
name: axial vasculature
namespace: zebrafish_anatomy
def: "Vasculature that runs along the rostral-caudal axis of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001073
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001074
name: taste bud
namespace: zebrafish_anatomy
def: "Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types.  The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the  barbels.  They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve." [ZFIN:ZDB-PUB-020403-3]
comment: Taste buds are made up of vertically oriented, elongate cells form the sensory epithelium of the organ: dark cells with many small microvilli, and light cells with one large microvillus as an apical ending. Between the dark and light cells and the basal lamina, the basal cells stretch horizontally.
synonym: "taste buds" EXACT PLURAL []
xref: TAO:0001074
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001101 ! gustatory system
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001075
name: choroidal fissure
namespace: zebrafish_anatomy
def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "choroidal fissures" EXACT PLURAL []
xref: TAO:0001075
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001076
name: intestinal bulb
namespace: zebrafish_anatomy
def: "The bulbous anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area." [ZFIN:ZDB-PUB-050120-6]
synonym: " pseudogaster " EXACT [ISBN:3510650670]
synonym: "anterior intestine" EXACT []
synonym: "foregut" RELATED []
xref: TAO:0001076
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005738 ! intestinal bulb primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001338 ! intestine
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001077
name: thymus primordium
namespace: zebrafish_anatomy
def: "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production." [ZFIN:ZDB-PUB-990414-60]
synonym: "thymic rudiment" EXACT []
xref: TAO:0001077
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0000818 ! vagal neural crest
relationship: develops_from ZFA:0001104 ! pharyngeal endoderm
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001159 ! immune system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001078
name: thymus
namespace: zebrafish_anatomy
def: "Paired organ where maturation of T-lymphocytes occurs. The adult thymus located on the dorsomedial aspect of the branchial cavity above the third pharyngeal cartilage.  The thymus undergoes a period of rapid growth beginning at about the third week and continuing for several more weeks. Accompanying this growth is a dramatic change in the shape of the thymus. It is ovoid initially and then starts to grow dorsally along the skull, forming a characteristic protrusion. During this growth period the adult pattern of rag1-positive cortex and rag1-negative medulla becomes established. The  protrusions diminish with age and the thymus gradually shrinks; at two years, the thymus is again confined to the pharynx with minimal if any protrusion." [ZFIN:ZDB-PUB-040216-26, ZFIN:ZDB-PUB-110609-55]
xref: TAO:0001078
is_a: ZFA:0000496 ! compound organ
relationship: develops_from ZFA:0001077 ! thymus primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001159 ! immune system
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001079
name: blood vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains blood that is actively transported around the organism." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "blood vessel" RELATED []
xref: TAO:0001079
is_a: ZFA:0001490 ! cavitated compound organ
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001080
name: sclerotome
namespace: zebrafish_anatomy
def: "Portion of somite that gives rise to skeletal elements." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "sclerotomes" EXACT PLURAL []
xref: TAO:0001080
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000155 ! somite
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001081
name: thyroid primordium
namespace: zebrafish_anatomy
def: "Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "thyroid primordia" EXACT PLURAL []
xref: TAO:0001081
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001104 ! pharyngeal endoderm
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001082
name: chordo neural hinge
namespace: zebrafish_anatomy
def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [ZFIN:ZDB-PUB-970723-15]
xref: TAO:0001082
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000077 ! tail bud
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001083
name: ventricular zone
namespace: zebrafish_anatomy
def: "Proliferative region that is part of the ventricular system.  The cells directly face the ventricle." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ventricular zones" EXACT PLURAL []
xref: TAO:0001083
is_a: ZFA:0000098 ! proliferative region
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001261 ! ventricular system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001084
name: epaxial myotome region
namespace: zebrafish_anatomy
synonym: "epaxial myotome regions" EXACT PLURAL []
xref: TAO:0001084
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001056 ! myotome
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001085
name: hypaxial myotome region
namespace: zebrafish_anatomy
synonym: "hypaxial muscle" EXACT []
xref: TAO:0001085
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001056 ! myotome
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001086
name: muscle pioneer
namespace: zebrafish_anatomy
def: "Cells that develop from adaxial cells  that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum." [ZFIN:ZDB-PUB-961219-12]
subset: cell_slim
synonym: "muscle pioneers" EXACT PLURAL []
synonym: "non migratory adaxial cells" EXACT []
xref: TAO:0001086
is_a: ZFA:0009114 ! muscle cell
relationship: develops_from ZFA:0000003 ! adaxial cell
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000155 ! somite
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001089
name: myoseptum
namespace: zebrafish_anatomy
synonym: "myocommata" EXACT [ZFIN:ZDB-PUB-151106-17]
synonym: "myosepta" EXACT PLURAL []
xref: TAO:0001089
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001056 ! myotome
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001093
name: unspecified
namespace: zebrafish_anatomy
def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001093
is_a: ZFA:0100000 ! zebrafish anatomical entity
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0001094
name: whole organism
namespace: zebrafish_anatomy
def: "Anatomical structure that is an individual member of Danio rerio." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "multi-cellular organism" EXACT []
xref: CARO:0000012
xref: TAO:0001094
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0001095
name: immature macula
namespace: zebrafish_anatomy
def: "Is an otic sensory epithelium that will develop into the mature macula." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "immature maculae" EXACT PLURAL []
synonym: "immature sensory patch" EXACT []
synonym: "immature sensory patches" EXACT PLURAL []
xref: TAO:0001095
is_a: ZFA:0007070 ! otic sensory epithelium
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0000051 ! otic vesicle
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001096
name: immature anterior macula
namespace: zebrafish_anatomy
def: "Is an otic sensory epithelium that will develop into the mature anterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "immature anterior maculae" EXACT PLURAL []
xref: TAO:0001096
is_a: ZFA:0007070 ! otic sensory epithelium
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0001095 ! immature macula
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001097
name: immature posterior macula
namespace: zebrafish_anatomy
def: "Is an otic sensory epithelium that will develop into the mature posterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "immature posterior maculae" EXACT PLURAL []
xref: TAO:0001097
is_a: ZFA:0007070 ! otic sensory epithelium
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0001095 ! immature macula
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001098
name: immature hair cell anterior macula
namespace: zebrafish_anatomy
def: "A hair cell which is immature and located in the anterior macula. It  will develop into a hair cell of the anterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "immature sensory hair cells anterior macula" EXACT PLURAL []
xref: TAO:0001098
is_a: ZFA:0009366 ! hair cell
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0001096 ! immature anterior macula
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001099
name: immature hair cell posterior macula
namespace: zebrafish_anatomy
def: "A hair cell which is immature and located in the posterior macula. It  will develop into a hair cell of the posterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880]
subset: cell_slim
synonym: "immature sensory hair cells posterior macula" EXACT PLURAL []
xref: TAO:0001099
is_a: ZFA:0009366 ! hair cell
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0001097 ! immature posterior macula
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001100
name: hepatic duct
namespace: zebrafish_anatomy
def: "A duct that carries bile from the liver to the intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001100
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000036 ! liver and biliary system
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001101
name: gustatory system
namespace: zebrafish_anatomy
def: "Sensory system that uses taste buds to sense chemical compounds." [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0001101
is_a: ZFA:0000282 ! sensory system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001104
name: pharyngeal endoderm
namespace: zebrafish_anatomy
xref: TAO:0001104
is_a: ZFA:0000017 ! endoderm
disjoint_from: ZFA:0005737 ! intestinal rod
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000056 ! pharynx
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001105
name: embryonic structure
namespace: zebrafish_anatomy
def: "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "embryonic structures" EXACT PLURAL []
xref: TAO:0001105
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000038 ! larval:day 6
relationship: part_of ZFA:0001094 ! whole organism
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0001106
name: pharyngeal pouch
namespace: zebrafish_anatomy
def: "Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits." [ZFIN:ZDB-PUB-041029-8]
synonym: "pharyngeal pouches" EXACT PLURAL []
xref: TAO:0001106
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001104 ! pharyngeal endoderm
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000056 ! pharynx
relationship: part_of ZFA:0001306 ! pharyngeal arch
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001107
name: internal gill bud
namespace: zebrafish_anatomy
def: "Portion of tissue that develops into a gill." [ZFIN:ZDB-PUB-041216-7]
synonym: "internal gill buds" EXACT PLURAL []
xref: TAO:0001107
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001106 ! pharyngeal pouch
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000056 ! pharynx
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0001108
name: anterior commissure
namespace: zebrafish_anatomy
def: "Telencephalic white matter (commissure) which connects the two cerebral hemispheres across the midline." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "commissura anterior" EXACT []
synonym: "commissura rostral" EXACT []
synonym: "rostral commissure" EXACT []
xref: TAO:0001108
is_a: ZFA:0000597 ! telencephalic white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001109
name: oocyte
namespace: zebrafish_anatomy
alt_id: ZFA:0009008
def: "A female germ cell that has entered meiosis." [GOC:tfm, ISBN:0721662544]
comment: I think the term we really want is CL:0000023.
subset: cell_slim
synonym: "egg" RELATED []
xref: CL:0000023
xref: TAO:0001109
is_a: ZFA:0009016 ! germ line cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001110 ! ovarian follicle
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001110
name: ovarian follicle
namespace: zebrafish_anatomy
def: "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg." [ZFIN:ZDB-PUB-961014-1020]
synonym: "egg follicle" EXACT []
xref: TAO:0001110
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000403 ! ovary
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001111
name: zona radiata
namespace: zebrafish_anatomy
def: "Acellular anatomic structure that is a layer that  separates the developing oocyte and the granulosa cell layer." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "vitelline envelope" EXACT []
xref: TAO:0001111
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001110 ! ovarian follicle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001112
name: granulosa cell layer
namespace: zebrafish_anatomy
def: "Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "granulosa cell layers" EXACT PLURAL []
xref: TAO:0001112
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001110 ! ovarian follicle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001113
name: thecal cell layer
namespace: zebrafish_anatomy
def: "Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes.  The thecal layer is external to the granulosa cell layer." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "thecal cell layers" EXACT PLURAL []
xref: TAO:0001113
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001110 ! ovarian follicle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001114
name: head
namespace: zebrafish_anatomy
def: "Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001114
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001115
name: trunk
namespace: zebrafish_anatomy
def: "Organism subdivision which is the part of the body posterior to the head and anterior to the post-vent region." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001115
is_a: ZFA:0001308 ! organism subdivision
relationship: develops_from ZFA:0000077 ! tail bud
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001116
name: presumptive structure
namespace: zebrafish_anatomy
def: "Portion of embryonic tissue determined by fate mapping to become a structure." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "presumptive structures" EXACT PLURAL []
xref: TAO:0001116
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0001117
name: post-vent region
namespace: zebrafish_anatomy
def: "Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "tail" RELATED []
xref: TAO:0001117
is_a: ZFA:0001308 ! organism subdivision
relationship: develops_from ZFA:0000077 ! tail bud
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001118
name: urogenital papilla
namespace: zebrafish_anatomy
def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed." [ZFIN:ZDB-PUB-040526-4]
synonym: "anal papilla" EXACT []
synonym: "anal papillae" EXACT []
synonym: "genital papilla" EXACT []
synonym: "UGP" EXACT []
synonym: "urogenital papillae" EXACT PLURAL []
xref: TAO:0001118
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000632 ! reproductive system
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001119
name: dermis
namespace: zebrafish_anatomy
def: "A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales." [ZFIN:ZDB-PUB-040726-12]
xref: TAO:0001119
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000255 ! paraxial mesoderm
relationship: develops_from ZFA:0000787 ! mesenchyme derived from head neural crest
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001120
name: neuroectoderm
namespace: zebrafish_anatomy
synonym: "neural ectoderm" EXACT []
synonym: "neurectoderm" EXACT []
xref: TAO:0001120
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000038 ! larval:day 6
relationship: part_of ZFA:0000016 ! ectoderm
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001121
name: presumptive shield
namespace: zebrafish_anatomy
def: "Presumptive structure fated to become the shield.  Defined by fate mapping." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001121
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000018 ! gastrula:germ-ring
relationship: start ZFS:0000016 ! blastula:30%-epiboly

[Term]
id: ZFA:0001122
name: primary germ layer
namespace: zebrafish_anatomy
def: "Portion of tissue that consists of a layer of cells that form during embryogenesis that will give rise to all structures of the organism." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "embryonic germ layers" EXACT []
xref: TAO:0001122
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000038 ! larval:day 6
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001123
name: axial fin skeleton
namespace: zebrafish_anatomy
def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:curator]
synonym: "median fin skeleton" EXACT []
synonym: "unpaired fin skeleton" EXACT []
xref: TAO:0001123
is_a: ZFA:0000317 ! postcranial axial skeleton
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001124
name: dorsal fin skeleton
namespace: zebrafish_anatomy
def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:curator]
xref: TAO:0001124
is_a: ZFA:0001123 ! axial fin skeleton
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001173 ! dorsal fin
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001125
name: organizer inducing center
namespace: zebrafish_anatomy
def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize.  Participates in positioning the shield." [ZFIN:ZDB-PUB-991102-7]
synonym: "Nieuwkoop center" EXACT []
xref: TAO:0001125
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000019 ! gastrula:shield
relationship: part_of ZFA:0000088 ! yolk syncytial layer
relationship: start ZFS:0000012 ! blastula:high

[Term]
id: ZFA:0001126
name: noninvoluting endocytic marginal cell cluster
namespace: zebrafish_anatomy
def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution." [ZFIN:ZDB-PUB-970107-2]
synonym: "NEM" EXACT []
synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL []
xref: TAO:0001126
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000017 ! gastrula:50%-epiboly
relationship: part_of ZFA:0000038 ! margin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001127
name: visual system
namespace: zebrafish_anatomy
def: "Sensory system responsible for the perception of light." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001127
is_a: ZFA:0000282 ! sensory system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001128
name: pharyngeal pouch 1
namespace: zebrafish_anatomy
synonym: "pharyngeal pouches 1" EXACT PLURAL []
xref: TAO:0001128
is_a: ZFA:0001106 ! pharyngeal pouch
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001129
name: pharyngeal pouches 2-6
namespace: zebrafish_anatomy
xref: TAO:0001129
is_a: ZFA:0001106 ! pharyngeal pouch
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001130
name: pharyngeal pouch 2
namespace: zebrafish_anatomy
synonym: "pharyngeal pouches 2" EXACT PLURAL []
xref: TAO:0001130
is_a: ZFA:0001129 ! pharyngeal pouches 2-6
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001131
name: pharyngeal pouch 3
namespace: zebrafish_anatomy
synonym: "pharyngeal pouches 3" EXACT PLURAL []
xref: TAO:0001131
is_a: ZFA:0001129 ! pharyngeal pouches 2-6
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001132
name: pharyngeal pouch 6
namespace: zebrafish_anatomy
synonym: "pharyngeal pouches 6" EXACT PLURAL []
xref: TAO:0001132
is_a: ZFA:0001129 ! pharyngeal pouches 2-6
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001133
name: pharyngeal pouch 5
namespace: zebrafish_anatomy
synonym: "pharyngeal pouches 5" EXACT PLURAL []
xref: TAO:0001133
is_a: ZFA:0001129 ! pharyngeal pouches 2-6
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001134
name: pharyngeal pouch 4
namespace: zebrafish_anatomy
synonym: "pharyngeal pouches 4" EXACT PLURAL []
xref: TAO:0001134
is_a: ZFA:0001129 ! pharyngeal pouches 2-6
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001135
name: neural tube
namespace: zebrafish_anatomy
def: "Portion of tissue that is the cavity-containing primordium of the central nervous system, developing from the neural rod in the late segmentation period." [ZFIN:ZDB-PUB-961014-576]
synonym: "presumptive central nervous system" RELATED []
xref: TAO:0001135
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000133 ! neural rod
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001136
name: hypodermis
namespace: zebrafish_anatomy
def: "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane.  It contains pigment cells." [ZFIN:ZDB-PUB-040726-12]
synonym: "subcutis" EXACT []
xref: TAO:0001136
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001137
name: ventral tooth row
namespace: zebrafish_anatomy
def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ventral tooth rows" EXACT PLURAL []
xref: TAO:0001137
is_a: ZFA:0001642 ! tooth row
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001138
name: vestibuloauditory system
namespace: zebrafish_anatomy
def: "Sensory system responsible for the perception of spatial orientation and auditory stimuli." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0001138
is_a: ZFA:0000282 ! sensory system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001139
name: mediodorsal tooth row
namespace: zebrafish_anatomy
def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "mediodorsal tooth rows" EXACT PLURAL []
xref: TAO:0001139
is_a: ZFA:0001642 ! tooth row
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001140
name: dorsal tooth row
namespace: zebrafish_anatomy
def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal tooth rows" EXACT PLURAL []
xref: TAO:0001140
is_a: ZFA:0001642 ! tooth row
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001141
name: tooth 1V
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001141
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001137 ! ventral tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001142
name: tooth 5V
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001142
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001137 ! ventral tooth row
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001143
name: tooth 4V
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001143
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001137 ! ventral tooth row
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001144
name: tooth 2V
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001144
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001137 ! ventral tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001145
name: tooth 3V
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001145
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001137 ! ventral tooth row
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001146
name: tooth 1MD
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001146
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001139 ! mediodorsal tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001147
name: tooth 2MD
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001147
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001139 ! mediodorsal tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001148
name: tooth 1D
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001148
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001140 ! dorsal tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001149
name: olfactory system
namespace: zebrafish_anatomy
def: "Sensory system responsible for olfaction.  Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001149
is_a: ZFA:0000282 ! sensory system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001150
name: tooth 2D
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001150
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001140 ! dorsal tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001151
name: tooth 4MD
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001151
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001139 ! mediodorsal tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001152
name: tooth 3MD
namespace: zebrafish_anatomy
def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001152
is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001139 ! mediodorsal tooth row
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001153
name: tooth placode
namespace: zebrafish_anatomy
def: "Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dental primordium" EXACT []
synonym: "tooth germ" EXACT []
xref: TAO:0001153
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001174 ! pharyngeal epithelium
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001154
name: anal fin musculature
namespace: zebrafish_anatomy
def: "Musculature part of the anal fin." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001154
is_a: ZFA:0000207 ! fin musculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001162 ! anal fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001155
name: enteric nervous system
namespace: zebrafish_anatomy
def: "Nervous system that  is involved primarily with the internal regulation of the gustatory processes. In most vertebrates the enteric neurons form two layers of ganglionic plexuses located along the entire length of the gastrointestinal tract." [GOC:cvs, GOC:ymb, http://www.macses.ucsf.edu/research/allostatic/parasym.php, ISBN:0080923437, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001155
is_a: ZFA:0001574 ! autonomic nervous system
relationship: develops_from ZFA:0001334 ! presumptive enteric nervous system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000112 ! gut
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001156
name: posterior lateral line placode
namespace: zebrafish_anatomy
def: "Dorsolateral placode that gives rise to the posterior lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "posterior lateral line placodes" EXACT PLURAL []
xref: TAO:0001156
is_a: ZFA:0001310 ! dorsolateral placode
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0001471 ! posterior lateral line system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001157
name: posterior lateral line primordium
namespace: zebrafish_anatomy
def: "A migrating group of cells originating from the posterior lateral line placode.  The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail." [ZFIN:ZDB-PUB-010705-16]
synonym: "posterior lateral line primordia" EXACT PLURAL []
xref: TAO:0001157
is_a: ZFA:0000228 ! lateral line primordium
relationship: develops_from ZFA:0001156 ! posterior lateral line placode
relationship: end ZFS:0000036 ! larval:day 4
relationship: part_of ZFA:0001471 ! posterior lateral line system
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001158
name: endocrine system
namespace: zebrafish_anatomy
def: "Anatomical system that produces, transports and secretes peptides." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001158
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001159
name: immune system
namespace: zebrafish_anatomy
def: "System that provides protection against foreign and abnormal cells and removes cellular debris." [ISBN:0314472304]
xref: TAO:0001159
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001160
name: adult
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFS:0000044

[Term]
id: ZFA:0001161
name: pectoral fin
namespace: zebrafish_anatomy
def: "Paired fin that is located in the thoracic region of the body." [TAO:curator]
synonym: "forefin" EXACT []
synonym: "pectoral fins" EXACT PLURAL []
xref: TAO:0001161
is_a: ZFA:0005596 ! paired fin
relationship: develops_from ZFA:0000141 ! pectoral fin bud
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001162
name: anal fin
namespace: zebrafish_anatomy
def: "Median fin that is located posterior to the anus." [TAO:curator]
xref: TAO:0001162
is_a: ZFA:0005597 ! median fin
relationship: develops_from ZFA:0001069 ! ventral fin fold
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001117 ! post-vent region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001163
name: supraneural 7
namespace: zebrafish_anatomy
def: "Supraneural located between vertebra 6 and 7." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001163
is_a: ZFA:0001397 ! post-Weberian supraneural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001164
name: supraneural 6
namespace: zebrafish_anatomy
def: "Supraneural located between vertebra 5 and 6." [ZFIN:ZDB-PUB-031103-13]
synonym: "sn6" EXACT []
xref: TAO:0001164
is_a: ZFA:0001397 ! post-Weberian supraneural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001165
name: supraneural 5
namespace: zebrafish_anatomy
def: "Supraneural located between  vertebra 4 and 5." [ZDB:ZDB-PUB-031103-13]
synonym: "sn5" EXACT []
xref: TAO:0001165
is_a: ZFA:0001397 ! post-Weberian supraneural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001166
name: supraneural 9
namespace: zebrafish_anatomy
def: "Supraneural located between vertebra 8 and 9." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001166
is_a: ZFA:0001397 ! post-Weberian supraneural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001167
name: vertebra 1
namespace: zebrafish_anatomy
def: "Vertebra that is posteriorly adjacent to the neurocranium." [TAO:curator]
synonym: "cervical vertebra 1" EXACT []
xref: TAO:0001167
is_a: ZFA:0001190 ! Weberian vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001168
name: vertebra 2
namespace: zebrafish_anatomy
def: "Vertebra that is posteriorly adjacent to vertebra 1." [TAO:curator]
synonym: "cervical vertebra 2" EXACT []
xref: TAO:0001168
is_a: ZFA:0001190 ! Weberian vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001169
name: vertebra 3
namespace: zebrafish_anatomy
def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:curator]
xref: TAO:0001169
is_a: ZFA:0001190 ! Weberian vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001170
name: vertebra 4
namespace: zebrafish_anatomy
def: "Vertebra that is posteriorly adjacent to vertebra 3." [TAO:curator]
xref: TAO:0001170
is_a: ZFA:0001190 ! Weberian vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001171
name: os suspensorium
namespace: zebrafish_anatomy
def: "Thin, rod-shaped, anteroventrally directed membrane bone that develops as a separate outgrowth  from the cartilage parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. It articulates with the tripus at the tripus-swim bladder connection. Often termed a fifth Weberian ossicle." [ZFIN:ZDB-PUB-031103-13]
comment: The os suspensorium is similar in shape to a rib, but the other ribs in Danio develop as separate ossifications that grow toward and articulate with the parapophyses.
xref: TAO:0001171
is_a: ZFA:0001591 ! endochondral bone
is_a: ZFA:0001636 ! membrane bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000461 ! Weberian ossicle
relationship: part_of ZFA:0001170 ! vertebra 4
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001172
name: roofing cartilage
namespace: zebrafish_anatomy
def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus.  Located dorsal to the neural tube." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001172
is_a: ZFA:0001457 ! postcranial axial cartilage
relationship: end ZFS:0000041 ! larval:days 21-29
relationship: part_of ZFA:0001191 ! supraneural 2
relationship: part_of ZFA:0001192 ! supraneural 3
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001173
name: dorsal fin
namespace: zebrafish_anatomy
def: "Median fin that is located on the dorsal surface of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001173
is_a: ZFA:0005597 ! median fin
relationship: develops_from ZFA:0000102 ! dorsal fin fold
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001174
name: pharyngeal epithelium
namespace: zebrafish_anatomy
def: "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side." [ZFIN:ZDB-PUB-070426-1]
xref: TAO:0001174
is_a: ZFA:0001495 ! unilaminar epithelium
relationship: develops_from ZFA:0001104 ! pharyngeal endoderm
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000056 ! pharynx
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001175
name: blastodisc
namespace: zebrafish_anatomy
def: "Embryonic structure that is the dome of cytoplasm that segregates from the yolk toward the animal pole during and after the one cell-stage, and which undergoes cleavage." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001175
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000015 ! blastula:dome
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0001176
name: blastoderm
namespace: zebrafish_anatomy
def: "Embryonic structure that is composed of the cellular part of the embryo, excluding the yolk cell, derived from the blastodisc by early morphogenesis; refers particularly to the time when the cell array is sheet-like, between 30%-epiboly and the end of gastrulation." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001176
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0001175 ! blastodisc
relationship: end ZFS:0000022 ! gastrula:bud
relationship: start ZFS:0000016 ! blastula:30%-epiboly

[Term]
id: ZFA:0001177
name: roof plate spinal cord region
namespace: zebrafish_anatomy
xref: TAO:0001177
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000075 ! spinal cord
relationship: part_of ZFA:0007058 ! roof plate
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001178
name: non neural ectoderm
namespace: zebrafish_anatomy
synonym: "ventral ectoderm" EXACT []
xref: TAO:0001178
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: part_of ZFA:0000016 ! ectoderm
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001179
name: epidermal superficial stratum
namespace: zebrafish_anatomy
def: "The outer layer of the epidermis.  The living cells form single cell layer, the outer surface of which is ornamented with microridges. These outer epidermal cells are not renewed periodically, but are individually replaced when dead." [ZFIN:ZDB-PUB-040726-12]
xref: TAO:0001179
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001185 ! periderm
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000105 ! epidermis
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001180
name: epidermal basal stratum
namespace: zebrafish_anatomy
def: "Lower layer of the epidermis. Composed of a single layer of cells.  The major function of the basal stratum is to keep the epidermis attached to the underlying dermis by means of (hemidesmosomes attached to the basement membrane." [ZFIN:ZDB-PUB-040726-12]
synonym: "basal epidermal layer" EXACT []
xref: TAO:0001180
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000105 ! epidermis
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001181
name: epidermal intermediate stratum
namespace: zebrafish_anatomy
def: "The tissue which lies between the basal stratum and the superficial stratum.   This layer is composed of a variable number of cell layers which contain  mucous goblet cells, club cells and sensory cells.  Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions." [ZFIN:ZDB-PUB-040726-12]
xref: TAO:0001181
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000105 ! epidermis
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001182
name: dermal deep region
namespace: zebrafish_anatomy
def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network." [ZFIN:ZDB-PUB-040726-12]
synonym: "stratum compactum" EXACT []
xref: TAO:0001182
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001186 ! collagenous dermal stroma
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001119 ! dermis
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001183
name: dermal superficial region
namespace: zebrafish_anatomy
def: "Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales.  Scale development takes place in this layer of the dermis." [ZFIN:ZDB-PUB-040726-12]
synonym: "stratum laxum" EXACT []
xref: TAO:0001183
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001119 ! dermis
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001184
name: pelvic fin
namespace: zebrafish_anatomy
def: "Paired fin located in the abdominal position of the body." [TAO:curator]
synonym: "pelvic fins" EXACT PLURAL []
xref: TAO:0001184
is_a: ZFA:0005596 ! paired fin
relationship: develops_from ZFA:0001384 ! pelvic fin bud
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001185
name: periderm
namespace: zebrafish_anatomy
def: "The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL." [ZFIN:ZDB-PUB-040726-12]
synonym: "EVL" RELATED []
xref: TAO:0001185
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0000086 ! EVL
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0000016 ! ectoderm
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001186
name: collagenous dermal stroma
namespace: zebrafish_anatomy
def: "Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-040726-12]
synonym: "primary dermal stroma" EXACT []
xref: TAO:0001186
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000041 ! larval:days 21-29
relationship: part_of ZFA:0001119 ! dermis
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001187
name: presumptive midbrain hindbrain boundary
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the midbrain hindbrain boundary." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "presumptive midbrain-hindbrain boundary" EXACT []
xref: TAO:0001187
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0000146 ! presumptive brain
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001188
name: Weberian apparatus
namespace: zebrafish_anatomy
def: "The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001188
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001559 ! vertebral column
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001189
name: vertebra
namespace: zebrafish_anatomy
def: "All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988).  Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-020807-1]
synonym: "vertebrae" EXACT PLURAL []
xref: TAO:0001189
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001559 ! vertebral column
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001190
name: Weberian vertebra
namespace: zebrafish_anatomy
def: "The first four vertebrae, which are part of the Weberian apparatus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "Weberian vertebrae" EXACT PLURAL []
xref: TAO:0001190
is_a: ZFA:0000263 ! precaudal vertebra
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001188 ! Weberian apparatus
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001191
name: supraneural 2
namespace: zebrafish_anatomy
def: "Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "small supraneural" EXACT []
synonym: "sn2" EXACT []
xref: TAO:0001191
is_a: ZFA:0000442 ! supraneural
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001363 ! neural complex
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001192
name: supraneural 3
namespace: zebrafish_anatomy
def: "Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "large supraneural" EXACT []
synonym: "sn3" EXACT []
xref: TAO:0001192
is_a: ZFA:0000442 ! supraneural
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001363 ! neural complex
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001193
name: supraneural 8
namespace: zebrafish_anatomy
def: "Supraneural located between vertebra 7 and 8." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001193
is_a: ZFA:0001397 ! post-Weberian supraneural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001194
name: cranial neural crest
namespace: zebrafish_anatomy
def: "Neural crest that is part of the head." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0001194
is_a: ZFA:0000045 ! neural crest
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001195
name: pars anterior
namespace: zebrafish_anatomy
def: "The anterior portion of the adenohypophysis. Comprised of the proximal and rostral pars anterior." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pars distalis" EXACT []
xref: TAO:0001195
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001282 ! adenohypophysis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001196
name: pars tuberalis
namespace: zebrafish_anatomy
comment: This structure does not exist in Zebrafish.  Consider proximal pars anterior ZFA:0005581.
xref: TAO:0001196
is_obsolete: true

[Term]
id: ZFA:0001197
name: pars intermedia
namespace: zebrafish_anatomy
def: "Caudal portion of the adenohypophysis." [ZFIN:ZDB-PUB-080616-4]
xref: TAO:0001197
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001282 ! adenohypophysis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001198
name: adenohypophyseal placode
namespace: zebrafish_anatomy
def: "Portion of tissue that gives rise to the adenohypophysis." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pituitary placode" EXACT []
xref: TAO:0001198
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001178 ! non neural ectoderm
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001199
name: infundibulum
namespace: zebrafish_anatomy
def: "Brain structure which is a short stalk connecting the neurohypophysis with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "hypophysial stalk" EXACT []
synonym: "infundibulum of hypothalamus" EXACT []
synonym: "pituitary stalk" EXACT []
xref: TAO:0001199
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001271 ! neurohypophysis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001200
name: corpuscles of Stannius
namespace: zebrafish_anatomy
def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001200
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001201
name: ventral lateral mesoderm
namespace: zebrafish_anatomy
xref: TAO:0001201
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000083 ! ventral mesoderm
relationship: start ZFS:0000021 ! gastrula:90%-epiboly

[Term]
id: ZFA:0001202
name: optic cup
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "eye cup" EXACT []
xref: TAO:0001202
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000050 ! optic vesicle
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001678 ! immature eye
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001203
name: ciliary zone
namespace: zebrafish_anatomy
def: "Multi-tissue structure that attach the zonules, that suspend the lens, to the eye.  The ciliary zone secretes aqueous humor.  Unlike mammals zebrafish the ciliary zone dose not contain processes or a circumferential band of muscle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15]
comment: May need to obsolete this term, ZDB-PUB-050701-15.\n\nThe ciliary "body" does not contain processes or a cumferential band of muscle. For this reason, we refer to the region adjacent and posterior to the iris as the ciliary zone, and not the ciliary body. The ciliary zone, however, is expanded and has a morphology consistent with contraction in a small area of the ventral-most region.
synonym: "ciliary bodies" RELATED PLURAL []
synonym: "ciliary body" RELATED []
synonym: "ciliary epithelial zone" EXACT []
xref: TAO:0001203
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005566 ! anterior segment eye
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001204
name: axial mesoderm
namespace: zebrafish_anatomy
def: "Region of the mesoderm that is located along the rostral-caudal axis of the embryo." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001204
is_a: ZFA:0000041 ! mesoderm
relationship: develops_from ZFA:0001378 ! axial hypoblast
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001205
name: Meckel's cartilage
namespace: zebrafish_anatomy
def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jaw, or ventral mandibular arch. It is typically resorbed in adults." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "ventral mandibular cartilage" EXACT []
xref: TAO:0001205
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0007117 ! Meckel's cartilage-palatoquadrate cartilage joint
relationship: part_of ZFA:0001273 ! ventral mandibular arch
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001206
name: intermediate mesoderm
namespace: zebrafish_anatomy
synonym: "IM" EXACT []
xref: TAO:0001206
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001207
name: presumptive rhombomere 1
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001207
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001208
name: presumptive rhombomere 2
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 2." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001208
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001209
name: presumptive rhombomere 7
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 7." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001209
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001210
name: presumptive rhombomere 6
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 6." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001210
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001211
name: presumptive rhombomere 5
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 5." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001211
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001212
name: presumptive rhombomere 4
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 4." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001212
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001213
name: presumptive rhombomere 3
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001213
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001214
name: presumptive rhombomere 8
namespace: zebrafish_anatomy
def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 8." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001214
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: part_of ZFA:0007029 ! hindbrain neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001215
name: thalamus
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "thalami" EXACT PLURAL []
xref: TAO:0001215
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001216
name: splanchnocranium
namespace: zebrafish_anatomy
def: "Anatomical cluster that is the regional skeletal system of the jaws, hyoid and branchial arches." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pharyngeal arch skeleton" EXACT []
synonym: "pharyngeal skeleton" EXACT []
xref: TAO:0001216
is_a: ZFA:0001478 ! anatomical cluster
relationship: develops_from ZFA:0005771 ! ectomesenchyme
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001217
name: presumptive hypochord
namespace: zebrafish_anatomy
def: "Tissue along the  lateral edges of the shield that is fated to develop into the hypochord." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001217
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000024 ! segmentation:5-9 somites
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001218
name: presumptive floor plate
namespace: zebrafish_anatomy
def: "Embryonic structure, the part of the neural plate fated to become floor plate." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001218
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000023 ! segmentation:1-4 somites
relationship: part_of ZFA:0000132 ! neural plate
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001220
name: copula
namespace: zebrafish_anatomy
def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "copulae" EXACT PLURAL []
xref: TAO:0001220
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001221
name: copula 1
namespace: zebrafish_anatomy
def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anterior copula" EXACT []
xref: TAO:0001221
is_a: ZFA:0001220 ! copula
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001222
name: copula 2
namespace: zebrafish_anatomy
def: "Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "posterior copula" EXACT []
xref: TAO:0001222
is_a: ZFA:0001220 ! copula
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001223
name: basibranchial 1
namespace: zebrafish_anatomy
def: "Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001223
is_a: ZFA:0000170 ! basibranchial
relationship: develops_from ZFA:0001221 ! copula 1
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001224
name: basibranchial 2
namespace: zebrafish_anatomy
def: "Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm).  It is the first of the three basibranchials to ossify." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001224
is_a: ZFA:0000170 ! basibranchial
relationship: develops_from ZFA:0001221 ! copula 1
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001225
name: basibranchial 3
namespace: zebrafish_anatomy
def: "Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001225
is_a: ZFA:0000170 ! basibranchial
relationship: develops_from ZFA:0001221 ! copula 1
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001226
name: basibranchial 4
namespace: zebrafish_anatomy
def: "Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001226
is_a: ZFA:0000170 ! basibranchial
relationship: develops_from ZFA:0001222 ! copula 2
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001227
name: mandibular arch skeleton
namespace: zebrafish_anatomy
def: "Skeletal and cartilaginous elements of the first pharyngeal arch." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "jaw" EXACT []
synonym: "jaw cartilage" EXACT []
synonym: "jaws" EXACT PLURAL []
synonym: "oral jaw skeleton" EXACT []
synonym: "pharyngeal arch 1 skeleton" EXACT []
xref: TAO:0001227
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001216 ! splanchnocranium
relationship: part_of ZFA:0001612 ! pharyngeal arch 1
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001228
name: pharyngeal arch 3 skeleton
namespace: zebrafish_anatomy
def: "Anatomical cluster made up of skeletal and cartilaginous elements of the third pharyngeal arch, also called first  gill or branchial arch." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "branchial arch 1 skeleton" EXACT []
synonym: "gill arch 1 skeleton" EXACT []
synonym: "visceral arch 3 skeleton" EXACT []
xref: TAO:0001228
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: part_of ZFA:0001606 ! pharyngeal arch 3
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001229
name: pharyngeal arch 7 skeleton
namespace: zebrafish_anatomy
def: "Anatomical cluster made up of skeletal and cartilaginous elements of the seventh pharyngeal arch, also called fifth  gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "branchial arch 5 skeleton" EXACT []
synonym: "gill arch 5 skeleton" EXACT []
synonym: "visceral arch 7 skeleton" EXACT []
xref: TAO:0001229
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: part_of ZFA:0001610 ! pharyngeal arch 7
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001230
name: pharyngeal arch 6 skeleton
namespace: zebrafish_anatomy
def: "Anatomical cluster made up of skeletal and cartilaginous elements of the sixth pharyngeal arch, also called fourth gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "branchial arch 4 skeleton" EXACT []
synonym: "gill arch 4 skeleton" EXACT []
synonym: "visceral arch 6 skeleton" EXACT []
xref: TAO:0001230
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: part_of ZFA:0001609 ! pharyngeal arch 6
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001231
name: pharyngeal arch 4 skeleton
namespace: zebrafish_anatomy
def: "Anatomical cluster made up of skeletal and cartilaginous elements of the fourth pharyngeal arch, also called second  gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "branchial arch 2 skeleton" EXACT []
synonym: "gill arch 2 skeleton" EXACT []
synonym: "visceral arch 4 skeleton" EXACT []
xref: TAO:0001231
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: part_of ZFA:0001607 ! pharyngeal arch 4
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001232
name: pharyngeal arch 5 skeleton
namespace: zebrafish_anatomy
def: "Anatomical cluster made up of skeletal and cartilaginous elements of the fifth pharyngeal arch, also called third gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "branchial arch 3 skeleton" EXACT []
synonym: "gill arch 3 skeleton" EXACT []
synonym: "visceral arch 5 skeleton" EXACT []
xref: TAO:0001232
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: part_of ZFA:0001608 ! pharyngeal arch 5
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001233
name: hypobranchial 1 bone
namespace: zebrafish_anatomy
def: "Ossification that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 15mm." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917]
synonym: "hypobranchial 1 bones" EXACT PLURAL []
xref: TAO:0001233
is_a: ZFA:0000363 ! hypobranchial bone
relationship: develops_from ZFA:0001524 ! hypobranchial 1 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001234
name: hypobranchial 4 bone
namespace: zebrafish_anatomy
def: "Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial." [GOC:mh, ORCiD:0000-0001-9114-8737]
comment: This may need to be obsoleted since it looks like the cartilage is either reabsorbed or fused with another skeletal element.
synonym: "hypobranchial 4 bones" EXACT PLURAL []
xref: TAO:0001234
is_a: ZFA:0000363 ! hypobranchial bone
relationship: develops_from ZFA:0001523 ! hypobranchial 4 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001235
name: hypobranchial 3 bone
namespace: zebrafish_anatomy
def: "Ossifications  that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1.  Ossification may begin when the fish is 8mm." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917]
synonym: "hypobranchial 3 bones" EXACT PLURAL []
xref: TAO:0001235
is_a: ZFA:0000363 ! hypobranchial bone
relationship: develops_from ZFA:0001526 ! hypobranchial 3 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001236
name: hypobranchial 2 bone
namespace: zebrafish_anatomy
def: "Ossification that develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults.  Ossification may begin when the fish is 12 mm." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917]
synonym: "hypobranchial 2 bones" EXACT PLURAL []
xref: TAO:0001236
is_a: ZFA:0000363 ! hypobranchial bone
relationship: develops_from ZFA:0001525 ! hypobranchial 2 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001237
name: ceratobranchial 1 bone
namespace: zebrafish_anatomy
def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001237
is_a: ZFA:0000488 ! ceratobranchial bone
relationship: develops_from ZFA:0001520 ! ceratobranchial 1 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001238
name: iris
namespace: zebrafish_anatomy
def: "Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/Iris+(anatomy), ORCiD:0000-0001-9114-8737]
synonym: "irises" EXACT PLURAL []
xref: TAO:0001238
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005566 ! anterior segment eye
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001239
name: ceratobranchial 5 bone
namespace: zebrafish_anatomy
def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4.  In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001239
is_a: ZFA:0000488 ! ceratobranchial bone
relationship: develops_from ZFA:0001521 ! ceratobranchial 5 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001240
name: ceratobranchial 4 bone
namespace: zebrafish_anatomy
def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001240
is_a: ZFA:0000488 ! ceratobranchial bone
relationship: develops_from ZFA:0001519 ! ceratobranchial 4 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001241
name: ceratobranchial 3 bone
namespace: zebrafish_anatomy
def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001241
is_a: ZFA:0000488 ! ceratobranchial bone
relationship: develops_from ZFA:0001518 ! ceratobranchial 3 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001242
name: ceratobranchial 2 bone
namespace: zebrafish_anatomy
def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001242
is_a: ZFA:0000488 ! ceratobranchial bone
relationship: develops_from ZFA:0001517 ! ceratobranchial 2 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001243
name: epibranchial 1 bone
namespace: zebrafish_anatomy
def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001243
is_a: ZFA:0000658 ! epibranchial bone
relationship: develops_from ZFA:0001528 ! epibranchial 1 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001244
name: epibranchial 5
namespace: zebrafish_anatomy
def: "Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "interbranchial IV" EXACT []
xref: TAO:0001244
is_a: ZFA:0001527 ! epibranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001245
name: epibranchial 4 bone
namespace: zebrafish_anatomy
def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001245
is_a: ZFA:0000658 ! epibranchial bone
relationship: develops_from ZFA:0001531 ! epibranchial 4 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001246
name: epibranchial 2 bone
namespace: zebrafish_anatomy
def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001246
is_a: ZFA:0000658 ! epibranchial bone
relationship: develops_from ZFA:0001530 ! epibranchial 2 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001247
name: epibranchial 3 bone
namespace: zebrafish_anatomy
def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "infrapharyngobranchial 3" EXACT []
xref: TAO:0001247
is_a: ZFA:0000658 ! epibranchial bone
relationship: develops_from ZFA:0001529 ! epibranchial 3 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001248
name: pharyngobranchial 1
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001223

[Term]
id: ZFA:0001249
name: exocrine pancreas
namespace: zebrafish_anatomy
def: "The exocrine pancreas is a diffuse organ composed of a branching network of ducts and associated acinar glands that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-050623-3]
synonym: "head pancreas" RELATED [ZFIN:ZDB-PUB-080922-7]
synonym: "rostral pancreas" RELATED [ZFIN:ZDB-PUB-050623-3.]
xref: TAO:0001249
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001369 ! anterior pancreatic bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000140 ! pancreas
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001250
name: pharyngobranchial 2 bone
namespace: zebrafish_anatomy
def: "Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3.  It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2.  In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "infrapharyngobranchial 2" EXACT []
xref: TAO:0001250
is_a: ZFA:0000527 ! pharyngobranchial bone
relationship: develops_from ZFA:0001536 ! pharyngobranchial 2 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001251
name: pharyngobranchial 4 cartilage
namespace: zebrafish_anatomy
def: "Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-192]
synonym: "infrapharyngobranchial 4 cartilage" EXACT []
synonym: "infrapharyngobranchials" EXACT []
xref: TAO:0001251
is_a: ZFA:0001533 ! pharyngobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001252
name: pharyngobranchial 3 bone
namespace: zebrafish_anatomy
def: "Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pharyngobranchial 3 bones" EXACT PLURAL []
xref: TAO:0001252
is_a: ZFA:0000527 ! pharyngobranchial bone
relationship: develops_from ZFA:0001534 ! pharyngobranchial 3 cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001253
name: pharyngobranchial 2+3
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001224
consider: ZFA:0001225

[Term]
id: ZFA:0001254
name: cranial motoneurons
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0001256
name: lateral floor plate
namespace: zebrafish_anatomy
def: "Portion of tissue that is the lateral part of the floor plate." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001256
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000022 ! floor plate
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001257
name: medial floor plate
namespace: zebrafish_anatomy
def: "Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001257
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000022 ! floor plate
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001258
name: floor plate rhombomere region
namespace: zebrafish_anatomy
def: "Floor plate that is part of the rhombomeres." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "floor plate hindbrain region" RELATED []
xref: TAO:0001258
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000022 ! floor plate
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001259
name: forebrain ventricle
namespace: zebrafish_anatomy
synonym: "forebrain vesicle" EXACT []
synonym: "prosencephalic ventricle" EXACT []
xref: TAO:0001259
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000109 ! forebrain
relationship: part_of ZFA:0001261 ! ventricular system
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001260
name: endocrine pancreas
namespace: zebrafish_anatomy
def: "The zebrafish endocrine pancreas is an compound organ component composed of small groups of islet cells that are distributed throughout the exocrine pancreas.  The islet cells produce insulin, glucagon and somatostatin." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
comment: May be called pancreatic islets of Langerhans (related synonym). Alpha cells secrete glucagon like peptide, beta-insulin, delta cells-somatostatin, pancreastatin.  May also be called "Brockman bodies".
synonym: "pancreatic islet" RELATED []
synonym: "tail pancreas" RELATED [ZFIN:ZDB-PUB-080922-7]
xref: TAO:0001260
is_a: ZFA:0001489 ! compound organ component
relationship: develops_from ZFA:0001370 ! posterior pancreatic bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000140 ! pancreas
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001261
name: ventricular system
namespace: zebrafish_anatomy
xref: TAO:0001261
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001262
name: gonad primordium
namespace: zebrafish_anatomy
def: "Portion of tissue that gives rise to the immature gonad." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "gonadal primordium" EXACT []
synonym: "undifferentiated gonad" EXACT []
xref: TAO:0001262
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000632 ! reproductive system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001263
name: ovarian follicle stage I
namespace: zebrafish_anatomy
def: "Stage I follicles (less than 140 microns) contain a stage 1 oocyte and are in the primary growth stage." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020]
synonym: "ovarian follicle stage 1" EXACT []
synonym: "previtellogenic ovarian follicle" EXACT []
xref: TAO:0001263
is_a: ZFA:0001110 ! ovarian follicle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001264
name: ovarian follicle stage IV
namespace: zebrafish_anatomy
def: "Stage IV follicles (690-730 microns) contain a stage 4 oocyte and are considered mature." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020]
synonym: "mature ovarian follicle" EXACT []
synonym: "ovarian follicle stage 4" EXACT []
xref: TAO:0001264
is_a: ZFA:0001110 ! ovarian follicle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001265
name: ovarian follicle stage II
namespace: zebrafish_anatomy
def: "Stage II follicles (140-340 microns) contain a stage 2 oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020]
synonym: "ovarian follicle stage 2" EXACT []
synonym: "ovarian follicles stage II" EXACT PLURAL []
xref: TAO:0001265
is_a: ZFA:0001110 ! ovarian follicle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001266
name: ovarian follicle stage III
namespace: zebrafish_anatomy
def: "Stage III follicles (340-690 microns) contain a stage 3 oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020]
synonym: "ovarian follicle stage 3" EXACT []
synonym: "ovarian follicles stage III" EXACT PLURAL []
xref: TAO:0001266
is_a: ZFA:0001110 ! ovarian follicle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001267
name: cranial vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the head." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "head vasculature" EXACT []
xref: TAO:0001267
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001268
name: sperm duct
namespace: zebrafish_anatomy
def: "Is a duct part of the testis that carries sperm and fluid to the cloaca." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "efferent duct" EXACT []
synonym: "efferent tubule" EXACT []
synonym: "sperm ducts" EXACT PLURAL []
xref: TAO:0001268
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000598 ! testis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001269
name: regenerating fin
namespace: zebrafish_anatomy
def: "Fin undergoing the process of regeneration." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "regenerating fins" EXACT PLURAL []
xref: TAO:0001269
is_a: ZFA:0000108 ! fin
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001270
name: blastema
namespace: zebrafish_anatomy
def: "A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-061108-12]
synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12]
xref: TAO:0001270
is_a: ZFA:0005147 ! regenerating tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001269 ! regenerating fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001271
name: neurohypophysis
namespace: zebrafish_anatomy
synonym: "posterior pituitary" EXACT []
xref: TAO:0001271
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000118 ! hypophysis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001272
name: palatoquadrate arch
namespace: zebrafish_anatomy
def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsal mandibular arch" EXACT []
synonym: "dorsal visceral arch 1" EXACT []
synonym: "upper jaw" EXACT []
synonym: "upper pharyngeal jaw" EXACT []
xref: TAO:0001272
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000444 ! suspensorium
relationship: part_of ZFA:0000590 ! oral region
relationship: part_of ZFA:0001227 ! mandibular arch skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001273
name: ventral mandibular arch
namespace: zebrafish_anatomy
def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lower jaw" EXACT []
synonym: "mandible" EXACT []
synonym: "mandibular series" EXACT []
xref: TAO:0001273
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000590 ! oral region
relationship: part_of ZFA:0001227 ! mandibular arch skeleton
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001274
name: coronomeckelian
namespace: zebrafish_anatomy
def: "The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm).  In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "coronoid" RELATED []
synonym: "sesamoid articular" EXACT []
xref: TAO:0001274
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001273 ! ventral mandibular arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001275
name: mentomeckelian
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001612

[Term]
id: ZFA:0001276
name: pharyngeal arch 2 skeleton
namespace: zebrafish_anatomy
synonym: "hyoid bars" EXACT []
xref: TAO:0001276
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001216 ! splanchnocranium
relationship: part_of ZFA:0001611 ! pharyngeal arch 2
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001277
name: anterior chamber swim bladder
namespace: zebrafish_anatomy
def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition.  It is connected to the posterior chamber via the ductus communicans." [ZFIN:ZDB-PUB-060306-11]
synonym: "camera arerea weberiana" EXACT []
xref: TAO:0001277
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005337 ! anterior swim bladder bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000076 ! swim bladder
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001278
name: posterior chamber swim bladder
namespace: zebrafish_anatomy
def: "The posterior compartment of the swim bladder plays a key role in buoyancy control.  It is connected to the anterior chamber via the ductus communicans.  This chamber corresponds to the swim bladder found in larval fish." [ZFIN:ZDB-PUB-060306-11]
xref: TAO:0001278
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000076 ! swim bladder
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001279
name: branchiostegal ray 1
namespace: zebrafish_anatomy
def: "Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL)." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "branchiostegal rays 1" EXACT PLURAL []
xref: TAO:0001279
is_a: ZFA:0000476 ! branchiostegal ray
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001280
name: branchiostegal ray 3
namespace: zebrafish_anatomy
def: "Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL)." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "branchiostegal rays 3" EXACT PLURAL []
xref: TAO:0001280
is_a: ZFA:0000476 ! branchiostegal ray
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001281
name: branchiostegal ray 2
namespace: zebrafish_anatomy
def: "Branchiostegal ray 2 is between rays 1 and 3 and ossifies second." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "branchiostegal rays 2" EXACT PLURAL []
xref: TAO:0001281
is_a: ZFA:0000476 ! branchiostegal ray
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001282
name: adenohypophysis
namespace: zebrafish_anatomy
def: "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish." [ZFIN:ZDB-PUB-040202-1]
comment: Changed start to long-pec from protruding mouth. In future, make a primordium and split the stages.
synonym: "anterior hypophysis" EXACT []
synonym: "anterior pituitary" EXACT []
xref: TAO:0001282
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001198 ! adenohypophyseal placode
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000118 ! hypophysis
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001283
name: pupil
namespace: zebrafish_anatomy
def: "Anatomical space that is located in the center of the iris and allows light to impinge on the retina." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/pupil, ORCiD:0000-0001-9114-8737]
synonym: "pupils" EXACT PLURAL []
xref: TAO:0001283
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000107 ! eye
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001284
name: optic fissure
namespace: zebrafish_anatomy
def: "Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme." [http://www.medical-dictionary.thefreedictionary.com/optic+fissure]
synonym: "choroid fissure" RELATED []
synonym: "optic fissures" EXACT PLURAL []
xref: TAO:0001284
is_a: ZFA:0001690 ! groove
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001202 ! optic cup
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001285
name: intersegmental vessel
namespace: zebrafish_anatomy
def: "Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries.  At early stages these vessels don't have venous or arterial markers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4]
synonym: "intersegmental vessels" EXACT PLURAL []
synonym: "intersomitic vessels" EXACT []
synonym: "segmental vessel" EXACT []
xref: TAO:0001285
is_a: ZFA:0005314 ! blood vessel
relationship: develops_from ZFA:0000014 ! dorsal aorta
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: part_of ZFA:0005037 ! post-vent vasculature
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001286
name: caudal vein plexus
namespace: zebrafish_anatomy
def: "Post-vent vasculature which forms an interconnecting network of venous tubes. The caudal vein plexus forms via a very active period of angiogenic sprouting, beginning at 25 hpf when venous endothelial cells of the posterior cardinal vein sprout and migrate ventrally, then fuse with neighboring tip cells. This process reiterates during a five-hour window, forming a primordial plexus by 30 hpf. By two days of development, the primitive caudal vein plexus has matured into a complex, well-perfused, venous vascular network. Starting at 4 dpf the caudal vein plexus starts to remodel and simplify." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5, ZFIN:ZDB-PUB-111011-36]
xref: TAO:0001286
is_a: ZFA:0005932 ! developmental vascular plexus
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001287
name: renal tubule
namespace: zebrafish_anatomy
def: "Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct.  Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "mesonephric tubule" EXACT []
synonym: "renal tubules" EXACT PLURAL []
xref: TAO:0001287
is_a: ZFA:0005289 ! renal duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005282 ! nephron
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001288
name: renal glomerulus
namespace: zebrafish_anatomy
def: "The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "glomerular capillary tuft" RELATED []
synonym: "renal glomeruli" EXACT PLURAL []
xref: TAO:0001288
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005281 ! renal corpuscle
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001289
name: ciliary marginal zone
namespace: zebrafish_anatomy
def: "Proliferative region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050427-5]
synonym: "circumferential germinal zone" EXACT []
synonym: "CMZ" EXACT []
synonym: "peripheral growth zone" EXACT []
synonym: "retinal ciliary marginal zone" EXACT []
synonym: "retinal proliferative zone" RELATED []
xref: TAO:0001289
is_a: ZFA:0000098 ! proliferative region
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000152 ! retina
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001290
name: stomodeum
namespace: zebrafish_anatomy
def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050523-10]
synonym: "oral ectoderm" RELATED [ZFIN:ZDB-PUB-100726-23]
xref: TAO:0001290
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000112 ! gut
relationship: part_of ZFA:0000590 ! oral region
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001291
name: facial ganglion
namespace: zebrafish_anatomy
def: "The sensory ganglion of the facial nerve." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "geniculate ganglion" EXACT []
synonym: "gVII" EXACT []
xref: TAO:0001291
is_a: ZFA:0001555 ! epibranchial ganglion
relationship: develops_from ZFA:0000762 ! facio-acoustic neural crest
relationship: develops_from ZFA:0001295 ! facial placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001292
name: epiphyseal stalk
namespace: zebrafish_anatomy
def: "The stalk emanates from the diencephalic roof at a left-of-medial position." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pineal stalk" EXACT []
xref: TAO:0001292
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001359 ! pineal complex
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001293
name: posterior kidney
namespace: zebrafish_anatomy
synonym: "posterior kidneys" EXACT PLURAL []
xref: TAO:0001293
is_a: ZFA:0000496 ! compound organ
relationship: develops_from ZFA:0000151 ! pronephros
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000529 ! kidney
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001294
name: epibranchial placode
namespace: zebrafish_anatomy
def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS.  The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31]
synonym: "epibranchial placodes" EXACT PLURAL []
xref: TAO:0001294
is_a: ZFA:0001309 ! neurogenic placode
relationship: develops_from ZFA:0007061 ! epibranchial field
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000142 ! peripheral nervous system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001295
name: facial placode
namespace: zebrafish_anatomy
def: "Epibranchial placode that gives rise to the facial ganglia." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31]
synonym: "geniculate placode" EXACT []
xref: TAO:0001295
is_a: ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001296
name: glossopharyngeal placode
namespace: zebrafish_anatomy
def: "Epibranchial placode that gives rise to the glossopharyngeal ganglia. Associated with the third pharyngeal arch." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31]
synonym: "petrosal placode" EXACT []
xref: TAO:0001296
is_a: ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001297
name: vagal placode 1
namespace: zebrafish_anatomy
def: "Epibranchial placode that gives rise to vagal ganglion 1." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31]
xref: TAO:0001297
is_a: ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001298
name: vagal placode 2
namespace: zebrafish_anatomy
def: "Epibranchial placode that gives rise to vagal ganglion 2." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31]
xref: TAO:0001298
is_a: ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001299
name: vagal placode 3
namespace: zebrafish_anatomy
def: "Epibranchial placode that gives rise to vagal ganglion 3." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-3]
xref: TAO:0001299
is_a: ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001300
name: vagal placode 4
namespace: zebrafish_anatomy
def: "Epibranchial placode that gives rise to vagal ganglion 4." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31]
xref: TAO:0001300
is_a: ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001301
name: glossopharyngeal ganglion
namespace: zebrafish_anatomy
synonym: "gIX" EXACT []
synonym: "petrosal ganglion" EXACT []
xref: TAO:0001301
is_a: ZFA:0001555 ! epibranchial ganglion
relationship: develops_from ZFA:0001296 ! glossopharyngeal placode
relationship: develops_from ZFA:0007066 ! glossopharyngeal neural crest
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001302
name: vagal ganglion 1
namespace: zebrafish_anatomy
synonym: "gX1" EXACT []
synonym: "nodose ganglion 1" EXACT []
xref: TAO:0001302
is_a: ZFA:0007067 ! vagal ganglion
relationship: develops_from ZFA:0001297 ! vagal placode 1
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001303
name: vagal ganglion 2
namespace: zebrafish_anatomy
synonym: "gX2" EXACT []
synonym: "nodose ganglion 2" EXACT []
xref: TAO:0001303
is_a: ZFA:0007067 ! vagal ganglion
relationship: develops_from ZFA:0001298 ! vagal placode 2
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001304
name: vagal ganglion 3
namespace: zebrafish_anatomy
synonym: "gX3" EXACT []
synonym: "nodose ganglion 3" EXACT []
xref: TAO:0001304
is_a: ZFA:0007067 ! vagal ganglion
relationship: develops_from ZFA:0001299 ! vagal placode 3
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001305
name: vagal ganglion 4
namespace: zebrafish_anatomy
synonym: "gX4" EXACT []
synonym: "nodose ganglion 4" EXACT []
xref: TAO:0001305
is_a: ZFA:0007067 ! vagal ganglion
relationship: develops_from ZFA:0001300 ! vagal placode 4
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001306
name: pharyngeal arch
namespace: zebrafish_anatomy
def: "One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-16, ZFIN:ZDB-PUB-131119-6, ZFIN:ZDB-PUB-961014-985]
synonym: "pharyngeal arches" EXACT PLURAL []
xref: TAO:0001306
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001307
name: pharyngeal musculature
namespace: zebrafish_anatomy
def: "Muscle system of the pharyngeal region." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001307
is_a: ZFA:0000328 ! cephalic musculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001306 ! pharyngeal arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001308
name: organism subdivision
namespace: zebrafish_anatomy
def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "body part" EXACT []
xref: CARO:0000032
xref: TAO:0001308
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001094 ! whole organism
relationship: start ZFS:0000017 ! gastrula:50%-epiboly

[Term]
id: ZFA:0001309
name: neurogenic placode
namespace: zebrafish_anatomy
def: "Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31]
synonym: "neurogenic placodes" EXACT PLURAL []
xref: TAO:0001309
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0007059 ! neurogenic field
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000016 ! ectoderm
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001310
name: dorsolateral placode
namespace: zebrafish_anatomy
def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "dorsolateral placodes" EXACT PLURAL []
xref: TAO:0001310
is_a: ZFA:0001309 ! neurogenic placode
relationship: develops_from ZFA:0007060 ! dorsolateral field
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001311
name: roof plate rhombomere region
namespace: zebrafish_anatomy
synonym: "roof plate hindbrain" RELATED []
xref: TAO:0001311
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001064 ! rhombomere
relationship: part_of ZFA:0007058 ! roof plate
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001312
name: dorsal anterior lateral line ganglion
namespace: zebrafish_anatomy
synonym: "anterodorsal lateral line ganglion" EXACT []
xref: TAO:0001312
is_a: ZFA:0001391 ! anterior lateral line ganglion
relationship: develops_from ZFA:0001316 ! anterior lateral line placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001313
name: ventral anterior lateral line ganglion
namespace: zebrafish_anatomy
synonym: "anteroventral lateral line ganglion" EXACT []
xref: TAO:0001313
is_a: ZFA:0001391 ! anterior lateral line ganglion
relationship: develops_from ZFA:0001316 ! anterior lateral line placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001314
name: posterior lateral line ganglion
namespace: zebrafish_anatomy
def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "pLLg" EXACT []
synonym: "posterior lateral line ganglia" EXACT PLURAL []
xref: TAO:0001314
is_a: ZFA:0000120 ! lateral line ganglion
relationship: develops_from ZFA:0001156 ! posterior lateral line placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001315
name: atrioventricular canal
namespace: zebrafish_anatomy
def: "The part of the heart connecting the atrium to the cardiac ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "AV canal" EXACT []
synonym: "AVC" EXACT []
xref: TAO:0001315
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001723 ! presumptive atrioventricular canal
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001316
name: anterior lateral line placode
namespace: zebrafish_anatomy
def: "Dorsolateral placode that gives rise to the anterior lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "anterior lateral line placodes" EXACT PLURAL []
xref: TAO:0001316
is_a: ZFA:0001310 ! dorsolateral placode
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0001468 ! anterior lateral line system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001317
name: endocardial cushion
namespace: zebrafish_anatomy
def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [GOC:cvs, ORCiD:0000-0002-2244-7917]
comment: ZDB-PUB-080309-14 says these don't exist but looked at 55 hpf rather then 36 hpf.
synonym: "endocardial cushions" EXACT PLURAL []
xref: TAO:0001317
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001320 ! endocardium
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0001318
name: cardiac jelly
namespace: zebrafish_anatomy
def: "The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001318
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000149 ! primitive heart tube
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0001319
name: myocardium
namespace: zebrafish_anatomy
synonym: "cardiac muscle" RELATED []
synonym: "heart muscle " RELATED []
xref: TAO:0001319
is_a: ZFA:0005280 ! cardiac muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001320
name: endocardium
namespace: zebrafish_anatomy
def: "Layer that lines the lumen of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001320
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0001724 ! presumptive endocardium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001321
name: neurocranial trabecula
namespace: zebrafish_anatomy
synonym: "neurocranial trabeculae" EXACT PLURAL []
synonym: "trabecula" EXACT []
synonym: "trabecular cartilage" EXACT []
xref: TAO:0001321
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001322
name: dorsoventral diencephalic tract
namespace: zebrafish_anatomy
def: "A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure dorsal to the ventral flexure." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-719, ZFIN:ZDB-PUB-961014-955]
synonym: "DVDT" EXACT []
xref: TAO:0001322
is_a: ZFA:0000338 ! diencephalic white matter
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001323
name: mid intestine
namespace: zebrafish_anatomy
def: "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity.  The mid intestine also appears to be involved in iron absorption." [ZFIN:ZDB-PUB-050120-6, ZFIN:ZDB-PUB-050831-7]
xref: TAO:0001323
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005737 ! intestinal rod
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001338 ! intestine
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001324
name: enteric musculature
namespace: zebrafish_anatomy
def: "Musculature of the gut." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "gut musculature" EXACT []
synonym: "tunica muscularis" RELATED [http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html]
xref: TAO:0001324
is_a: ZFA:0000548 ! musculature system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000112 ! gut
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001325
name: neural prezygapophysis
namespace: zebrafish_anatomy
def: "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "neural prezygapophyses" EXACT PLURAL []
synonym: "neural prezygopophyses" EXACT []
xref: TAO:0001325
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001066 ! neural arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001326
name: lens epithelium
namespace: zebrafish_anatomy
def: "Epithelium which borders the anterior and equitorial region of the lens.  Lens growth in zebrafish occurs via the differentiation of additional fibre cells from lens epithelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070504-24, ZFIN:ZDB-PUB-100202-20]
xref: TAO:0001326
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000035 ! lens
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001327
name: abdominal musculature
namespace: zebrafish_anatomy
def: "Trunk musculature that is located in ventral wall of abdomen." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001327
is_a: ZFA:0000473 ! trunk musculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001328
name: neuromere
namespace: zebrafish_anatomy
def: "A metameric segment of the central nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "neural segment" EXACT []
synonym: "neuromeres" EXACT PLURAL []
xref: TAO:0001328
is_a: ZFA:0001308 ! organism subdivision
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001329
name: retinal inner plexiform layer
namespace: zebrafish_anatomy
def: "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "inner plexiform layer" EXACT []
xref: TAO:0001329
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001330
name: retinal outer plexiform layer
namespace: zebrafish_anatomy
def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "retinal outer plexiform layers" EXACT PLURAL []
xref: TAO:0001330
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001331
name: outer limiting membrane
namespace: zebrafish_anatomy
def: "Layer that separates the inner segment portions of the photo receptors from their cell nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "external limiting membrane" EXACT []
synonym: "outer limiting membranes" EXACT PLURAL []
xref: TAO:0001331
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001332
name: spinal neuromere
namespace: zebrafish_anatomy
synonym: "spinal cord segment" EXACT []
synonym: "spinal neuromeres" EXACT PLURAL []
xref: TAO:0001332
is_a: ZFA:0001328 ! neuromere
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000075 ! spinal cord
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001333
name: visceral organ
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0001334
name: presumptive enteric nervous system
namespace: zebrafish_anatomy
def: "Presumptive structure fated to become enteric nervous system.  Develops from the vagal neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0001334
is_a: ZFA:0001116 ! presumptive structure
relationship: develops_from ZFA:0000818 ! vagal neural crest
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001335
name: supradorsal
namespace: zebrafish_anatomy
def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "supradorsals" EXACT PLURAL []
xref: TAO:0001335
is_a: ZFA:0001457 ! postcranial axial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001066 ! neural arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001336
name: neural spine
namespace: zebrafish_anatomy
def: "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "neural spines" EXACT PLURAL []
xref: TAO:0001336
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001066 ! neural arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001338
name: intestine
namespace: zebrafish_anatomy
def: "Folded tube that has parts intestinal bulb, mid intestine and posterior intestine.  The intestine is where digestion and nutrient absorption occurs." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-050120-6]
xref: TAO:0001338
is_a: ZFA:0001490 ! cavitated compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000112 ! gut
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001339
name: nucleus of the tract of the anterior commissure
namespace: zebrafish_anatomy
def: "Telencephalic nucleus from which the axons of the anterior commissure originate." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ntAC" EXACT []
xref: TAO:0001339
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001340
name: nucleus of the tract of the postoptic commissure
namespace: zebrafish_anatomy
def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ntPOC" EXACT []
xref: TAO:0001340
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001341
name: intervening zone
namespace: zebrafish_anatomy
def: "A zone of delayed differentiation at the midbrain hindbrain boundary.  The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates." [ZFIN:ZDB-PUB-030307-1]
synonym: "IZ" EXACT []
xref: TAO:0001341
is_a: ZFA:0001478 ! anatomical cluster
relationship: develops_from ZFA:0001342 ! presumptive intervening zone
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000042 ! midbrain hindbrain boundary
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001342
name: presumptive intervening zone
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the intervening zone." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001342
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000025 ! segmentation:10-13 somites
relationship: part_of ZFA:0007023 ! posterior neural keel
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001343
name: telencephalon diencephalon boundary
namespace: zebrafish_anatomy
def: "Boundary between the telencephalon and diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001343
is_a: ZFA:0001689 ! anatomical line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000109 ! forebrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001344
name: zona limitans intrathalamica
namespace: zebrafish_anatomy
def: "The border between the dorsal and ventral thalamus." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "zli" EXACT []
xref: TAO:0001344
is_a: ZFA:0001689 ! anatomical line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001215 ! thalamus
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001345
name: interrenal gland
namespace: zebrafish_anatomy
def: "An bilobed multi-tissue structure lateral to the notochord composed of an epithelium consisting of steroid producing cells interposed with chromaffin cells.  The interrenal gland is embedded within the head kidney.  The interrenal gland is the zebrafish functional equivalent of the mammalian adrenal cortex." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030408-12, ZFIN:ZDB-PUB-061108-13]
xref: TAO:0001345
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001346 ! interrenal primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000669 ! head kidney
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001346
name: interrenal primordium
namespace: zebrafish_anatomy
def: "Multi-tissue structure located in the kidney that develops into the interrenal gland." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001346
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001206 ! intermediate mesoderm
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0000151 ! pronephros
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001347
name: stratum fibrosum et griseum superficiale
namespace: zebrafish_anatomy
def: "Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae.  Has hypothalamic and retinal  inputs." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081218-37, ZFIN:ZDB-PUB-101011-44, ZFIN:ZDB-PUB-180207-5]
synonym: "SFGS" RELATED []
synonym: "strata fibrosum et griseum superficiales" EXACT PLURAL []
xref: TAO:0001347
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005907 ! tectal neuropile
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001348
name: stratum marginale
namespace: zebrafish_anatomy
def: "Dorsalmost layer of the tectal neuropile that  does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180207-5]
synonym: "strata marginale" EXACT PLURAL []
synonym: "stratum fibrosum marginale" EXACT [ZFIN:ZDB-PUB-180207-5]
xref: TAO:0001348
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005907 ! tectal neuropile
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001349
name: stratum opticum
namespace: zebrafish_anatomy
def: "Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons." [ZFIN:ZDB-PUB-101101-16]
synonym: "strata opticum" EXACT PLURAL []
xref: TAO:0001349
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005907 ! tectal neuropile
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001350
name: stratum griseum centrale
namespace: zebrafish_anatomy
xref: TAO:0001350
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005907 ! tectal neuropile
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001351
name: stratum album centrale
namespace: zebrafish_anatomy
def: "Has hypothalamic inputs." [ZFIN:ZDB-PUB-180207-5]
synonym: "strata album centrales" EXACT PLURAL []
xref: TAO:0001351
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005907 ! tectal neuropile
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001355
name: primitive meninx
namespace: zebrafish_anatomy
def: "The vascularized fibrous sheath that surrounds the central nervous system." [http://www.archive.org/stream/contributionstoe04carn#page/n3/mode/2up]
synonym: "meninges" EXACT []
synonym: "meninx primitiva" EXACT []
xref: TAO:0001355
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000045 ! neural crest
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000396 ! nervous system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001356
name: terminal nerve
namespace: zebrafish_anatomy
def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina.  It is thought to develop from cranial neural crest." [PMID:15821344, ZFIN:ZDB-PUB-041202-1]
synonym: "nervus terminalis" EXACT []
xref: TAO:0001356
is_a: ZFA:0000641 ! cranial nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001357
name: alar plate midbrain region
namespace: zebrafish_anatomy
def: "Portion of tissue that is ventrolateral to the roof plate and part of the midbrain." [ISBN:0444517383, ZFIN:ZDB-PUB-961014-576]
xref: TAO:0001357
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0007039 ! midbrain neural tube
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001358
name: roof plate diencephalic region
namespace: zebrafish_anatomy
def: "Roof plate that is part of the diencephalic region." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001358
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0000101 ! diencephalon
relationship: part_of ZFA:0007058 ! roof plate
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001359
name: pineal complex
namespace: zebrafish_anatomy
xref: TAO:0001359
is_a: ZFA:0001512 ! anatomical group
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000509 ! epithalamus
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001360
name: parapineal organ
namespace: zebrafish_anatomy
def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry." [ZFIN:ZDB-PUB-030206-1]
xref: TAO:0001360
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001359 ! pineal complex
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001361
name: basiventral
namespace: zebrafish_anatomy
def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "arcualia" RELATED []
xref: TAO:0001361
is_a: ZFA:0001457 ! postcranial axial cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001362
name: parapophysis
namespace: zebrafish_anatomy
def: "Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "lateral process of basiventral" EXACT []
synonym: "parapophyses" EXACT PLURAL []
synonym: "transverse process" EXACT []
xref: TAO:0001362
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001361 ! basiventral
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001582 ! non-Weberian precaudal vertebra
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001363
name: neural complex
namespace: zebrafish_anatomy
alt_id: ZFA:0001398
def: "The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae (Hoffmann and Britz, 2006)." [ZFIN:ZDB-PUB-031103-13]
synonym: "Weberian supraneural" EXACT []
xref: TAO:0001363
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001188 ! Weberian apparatus
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001364
name: hemal spine
namespace: zebrafish_anatomy
def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "haemal spine" EXACT []
xref: TAO:0001364
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000519 ! hemal arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001365
name: trigeminal motor nucleus
namespace: zebrafish_anatomy
synonym: "motor nucleus V" EXACT []
synonym: "nV" EXACT []
xref: TAO:0001365
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001366
name: tract of the postoptic commissure
namespace: zebrafish_anatomy
def: "Tract that extends from the postoptic commissure through a curved trajectory in the diencephalon into the ventral midbrain. In the anterior diencephalon the TOP is a single tract but caudally the axons of the TPOC diverge and tend to grow in distinct parallel bundles. The more dorsal bundles extend in the dorsolateral tegmentum, the ventral bundles of the TPOC merge into the DLF in the hindbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-167]
synonym: "TPOC" EXACT []
xref: TAO:0001366
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000059 ! postoptic commissure
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001367
name: forebrain midbrain boundary
namespace: zebrafish_anatomy
def: "The boundary between the diencephalon and the mesencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "diencephalic-mesencephalic boundary" EXACT []
xref: TAO:0001367
is_a: ZFA:0001689 ! anatomical line
relationship: develops_from ZFA:0007040 ! forebrain midbrain boundary neural tube
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001368
name: presumptive forebrain midbrain boundary
namespace: zebrafish_anatomy
def: "Embryonic structure that gives rise to the forebrain midbrain boundary." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001368
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000020 ! gastrula:75%-epiboly
relationship: part_of ZFA:0000146 ! presumptive brain
relationship: part_of ZFA:0007014 ! anterior presumptive neural plate
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001369
name: anterior pancreatic bud
namespace: zebrafish_anatomy
def: "Pancreatic bud that develops from a ridge on the ventral side of the intestinal bulb primordium." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030902-16]
synonym: "exocrine anlage" EXACT [ZFIN:ZDB-PUB-050623-3]
synonym: "rostral anlage" EXACT []
synonym: "ventral anterior bud" EXACT [ZFIN:ZDB-PUB-030902-16]
synonym: "ventral pancreatic anlage" EXACT []
xref: TAO:0001369
is_a: ZFA:0001390 ! pancreatic bud
relationship: develops_from ZFA:0005738 ! intestinal bulb primordium
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0001370
name: posterior pancreatic bud
namespace: zebrafish_anatomy
def: "Pancreatic bud that forms dorsal and adjacent to the developing intestine." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030902-16]
comment: Furthermore, zebrafish exocrine progenitors appear to arise from endoderm rostral to the gut tube, which it subsequently joins, rather than as an extension of the epithelium of the main duct. Thus, we argue against a classical model (Field et al., 2003) in which the zebrafish exocrine pancreas buds from either a rod of pre-intestinal endoderm or the gut tube which in zebrafish gives rise to the intestine (Wallace and Pack, 2003).  ZDB-PUB-050623-3.
synonym: "caudal anlage" EXACT []
synonym: "dorsal pancreatic anlage" EXACT []
synonym: "dorsal posterior bud" RELATED [ZFIN:ZDB-PUB-030902-16]
xref: TAO:0001370
is_a: ZFA:0001390 ! pancreatic bud
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001371
name: pancreatic system
namespace: zebrafish_anatomy
def: "System responsible for the production and movement of pancreatic hormones and enzymes." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001371
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001372
name: pancreatic duct
namespace: zebrafish_anatomy
def: "Duct that collects and carries secretions of the exocrine pancreas." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001372
is_a: ZFA:0005162 ! digestive system duct
relationship: develops_from ZFA:0001369 ! anterior pancreatic bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001371 ! pancreatic system
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0001373
name: migratory slow muscle precursor cell
namespace: zebrafish_anatomy
def: "Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961219-12]
subset: cell_slim
synonym: "migratory slow muscle precursor cells" EXACT PLURAL []
xref: TAO:0001373
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0000003 ! adaxial cell
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000155 ! somite
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001374
name: atrial myocardium
namespace: zebrafish_anatomy
def: "Myocardium of the heart atrium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001374
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000471 ! atrium
relationship: part_of ZFA:0001319 ! myocardium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001375
name: ventriculo bulbo valve
namespace: zebrafish_anatomy
def: "A heart valve located between the ventricle and bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "bulboventricular valve" EXACT []
xref: TAO:0001375
is_a: ZFA:0005065 ! heart valve
relationship: develops_from ZFA:0001317 ! endocardial cushion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000009 ! cardiac ventricle
relationship: part_of ZFA:0000173 ! bulbus arteriosus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001376
name: presumptive ectoderm
namespace: zebrafish_anatomy
alt_id: ZFA:0000147
def: "Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping." [ZFIN:ZDB-PUB-961014-608]
synonym: "presumptive epidermis" EXACT []
xref: TAO:0001376
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000019 ! gastrula:shield
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0001377
name: presumptive mesoderm
namespace: zebrafish_anatomy
def: "Presumptive structure fated to become mesoderm. Determined by fate mapping." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001377
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000021 ! gastrula:90%-epiboly
relationship: start ZFS:0000014 ! blastula:sphere

[Term]
id: ZFA:0001378
name: axial hypoblast
namespace: zebrafish_anatomy
def: "Region of the hypoblast that is located along the rostral-caudal axis of the embryo." [GOC:cvs, ORCID:0000-0002-2244-7917]
xref: TAO:0001378
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000071 ! shield
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0000117 ! hypoblast
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0001379
name: pharyngeal ectoderm
namespace: zebrafish_anatomy
xref: TAO:0001379
is_a: ZFA:0000016 ! ectoderm
relationship: end ZFS:0000027 ! segmentation:20-25 somites
relationship: part_of ZFA:0000056 ! pharynx
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001381
name: hypohyal bone
namespace: zebrafish_anatomy
def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypohyals" EXACT PLURAL []
xref: TAO:0001381
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001400 ! ceratohyal cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001382
name: epibranchial uncinate process
namespace: zebrafish_anatomy
def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes.  Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "epibranchial uncinate processes" EXACT PLURAL []
xref: TAO:0001382
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000658 ! epibranchial bone
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001383
name: fin bud
namespace: zebrafish_anatomy
def: "Surface structure that develops into a paired fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "fin buds" EXACT PLURAL []
xref: TAO:0001383
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000042 ! juvenile:days 30-44
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001384
name: pelvic fin bud
namespace: zebrafish_anatomy
def: "Fin bud that develops into the pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pelvic fin buds" EXACT PLURAL []
xref: TAO:0001384
is_a: ZFA:0001383 ! fin bud
relationship: develops_from ZFA:0001454 ! pelvic fin field
relationship: end ZFS:0000042 ! juvenile:days 30-44
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001385
name: apical ectodermal ridge pelvic fin bud
namespace: zebrafish_anatomy
def: "Apical ectodermal ridge that is part of the pelvic fin bud." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "apical ectodermal ridge pelvic fin buds" EXACT PLURAL []
xref: TAO:0001385
is_a: ZFA:0001702 ! apical ectodermal ridge
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001384 ! pelvic fin bud
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001386
name: mesoderm pelvic fin bud
namespace: zebrafish_anatomy
def: "Mesoderm part of pelvic fin bud." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "mesoderm pelvic fin buds" EXACT PLURAL []
xref: TAO:0001386
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001384 ! pelvic fin bud
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001387
name: pelvic fin skeleton
namespace: zebrafish_anatomy
def: "Skeleton that supports the pelvic fin.  The skeleton consists of consists of supporting endochondral radials and dermal fin rays or lepidotrichia." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001387
is_a: ZFA:0000027 ! paired fin skeleton
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001184 ! pelvic fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001388
name: epithelial mesenchymal boundary
namespace: zebrafish_anatomy
synonym: "epithelial mesenchymal boundarys" EXACT PLURAL []
xref: TAO:0001388
is_a: ZFA:0001689 ! anatomical line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001269 ! regenerating fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001389
name: regeneration epithelium
namespace: zebrafish_anatomy
def: "Epithelium of the regenerating fin that is formed as part of the healing process." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "epidermal cap" EXACT []
synonym: "wound epidermis" EXACT []
synonym: "wound epithelium" EXACT []
xref: TAO:0001389
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001269 ! regenerating fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001390
name: pancreatic bud
namespace: zebrafish_anatomy
def: "Embryonic structure that develops from the pancreas primordium and develops into the pancreas.  At Prim-5 the buds are located between the dorsal aorta and the posterior cardinal vein." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-191011-21]
synonym: "pancreatic buds" EXACT PLURAL []
xref: TAO:0001390
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0000254 ! pancreas primordium
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001371 ! pancreatic system
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001391
name: anterior lateral line ganglion
namespace: zebrafish_anatomy
def: "The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "anterior lateral line ganglia" EXACT PLURAL []
xref: TAO:0001391
is_a: ZFA:0000120 ! lateral line ganglion
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001392
name: parapophysis 1
namespace: zebrafish_anatomy
def: "Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "basipophysis 1" EXACT []
synonym: "lateral process 1" EXACT []
xref: TAO:0001392
is_a: ZFA:0001362 ! parapophysis
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001167 ! vertebra 1
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001393
name: parapophysis 2
namespace: zebrafish_anatomy
def: "Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "basipophysis" EXACT []
synonym: "lateral process 2" EXACT []
xref: TAO:0001393
is_a: ZFA:0001362 ! parapophysis
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001168 ! vertebra 2
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001394
name: neural arch 3
namespace: zebrafish_anatomy
def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001394
is_a: ZFA:0001066 ! neural arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001169 ! vertebra 3
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001395
name: neural arch 4
namespace: zebrafish_anatomy
def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001395
is_a: ZFA:0001066 ! neural arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001170 ! vertebra 4
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001396
name: parapophysis/rib
namespace: zebrafish_anatomy
def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001396
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001170 ! vertebra 4
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001397
name: post-Weberian supraneural
namespace: zebrafish_anatomy
def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-031103-13]
synonym: "post-Weberian supraneurals" EXACT PLURAL []
xref: TAO:0001397
is_a: ZFA:0000442 ! supraneural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001399
name: palatoquadrate cartilage
namespace: zebrafish_anatomy
def: "Cartilage that is the dorsal component of the first pharyngeal arch.  It is roughly triangular with slightly concave dorsal edges and convex ventral edges.  The anteroventral corner gives rise the quadrate and articulates with the posterior end of  Meckel's cartilage.  The anterodorsal tip articulates with the lateral edge of the ethmoid plate and the posteroventral edge articulates with the anterodorsal edge of the hyosymplectic." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192]
synonym: "dorsal mandibular cartilage" EXACT []
synonym: "pterygoquadrate" EXACT []
synonym: "quadrate cartilage" EXACT []
xref: TAO:0001399
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0007117 ! Meckel's cartilage-palatoquadrate cartilage joint
relationship: part_of ZFA:0001272 ! palatoquadrate arch
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001400
name: ceratohyal cartilage
namespace: zebrafish_anatomy
def: "Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001400
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005885 ! operculohyoid ligament
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001401
name: dorsal hyoid arch
namespace: zebrafish_anatomy
synonym: "dorsal visceral arch 2" EXACT []
xref: TAO:0001401
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000444 ! suspensorium
relationship: part_of ZFA:0001276 ! pharyngeal arch 2 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001402
name: ventral hyoid arch
namespace: zebrafish_anatomy
synonym: "ventral visceral arch 2" EXACT []
xref: TAO:0001402
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001276 ! pharyngeal arch 2 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001403
name: supraethmoid
namespace: zebrafish_anatomy
def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "supra-ethmoid" RELATED []
xref: TAO:0001403
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001404
name: preethmoid bone
namespace: zebrafish_anatomy
def: "Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pre-ethmoid" EXACT []
synonym: "preethmoid bones" EXACT PLURAL []
xref: TAO:0001404
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001405 ! ethmoid cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001405
name: ethmoid cartilage
namespace: zebrafish_anatomy
def: "Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ethmoid plate" EXACT []
xref: TAO:0001405
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000042 ! juvenile:days 30-44
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001406
name: kinethmoid bone
namespace: zebrafish_anatomy
def: "Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001406
is_a: ZFA:0001590 ! dermal bone
relationship: develops_from ZFA:0000585 ! kinethmoid cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0000863 ! dermatocranium
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001407
name: infraorbital 2
namespace: zebrafish_anatomy
def: "Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001407
is_a: ZFA:0000376 ! infraorbital
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001649 ! infraorbital series
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001408
name: infraorbital 3
namespace: zebrafish_anatomy
def: "Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969)." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001408
is_a: ZFA:0000376 ! infraorbital
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001649 ! infraorbital series
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001409
name: infraorbital 4
namespace: zebrafish_anatomy
def: "Plate like dermal bone. Usually fused with infraorbital 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001409
is_a: ZFA:0000376 ! infraorbital
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001649 ! infraorbital series
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001410
name: orbital region
namespace: zebrafish_anatomy
def: "Anatomical cluster that is a anteriolateral part of the cranium and structurally supports the eye." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001410
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001411
name: sclerotic bone
namespace: zebrafish_anatomy
def: "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid.  The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070629-20]
synonym: "scleral ossicle" EXACT []
synonym: "sclerotic bones" EXACT PLURAL []
xref: TAO:0001411
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001509 ! sclerotic cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001410 ! orbital region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001412
name: epiotic
namespace: zebrafish_anatomy
alt_id: ZFA:0000659
def: "Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "epioccipital" EXACT []
xref: TAO:0001412
is_a: ZFA:0001591 ! endochondral bone
relationship: develops_from ZFA:0001500 ! auditory capsule
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005889 ! epiotic-posttemporal joint
relationship: overlaps ZFA:0005891 ! epiotic-parietal joint
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000041 ! larval:days 21-29

[Term]
id: ZFA:0001414
name: occipital region
namespace: zebrafish_anatomy
def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyle." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "basicranial region" EXACT []
xref: TAO:0001414
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001415
name: pelvic radial 2
namespace: zebrafish_anatomy
def: "Second radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radials 2" EXACT PLURAL []
xref: TAO:0001415
is_a: ZFA:0000508 ! pelvic radial
relationship: develops_from ZFA:0001541 ! pelvic radial 2 cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001416
name: pelvic radial 3
namespace: zebrafish_anatomy
def: "Third radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radials 3" EXACT PLURAL []
xref: TAO:0001416
is_a: ZFA:0000508 ! pelvic radial
relationship: develops_from ZFA:0001540 ! pelvic radial 3 cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001417
name: pelvic radial 1
namespace: zebrafish_anatomy
def: "First radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radials 1" EXACT PLURAL []
xref: TAO:0001417
is_a: ZFA:0000508 ! pelvic radial
relationship: develops_from ZFA:0001542 ! pelvic radial 1 cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001418
name: dorsal fin lepidotrichium
namespace: zebrafish_anatomy
def: "Lepidotrichium which is part of the dorsal fin.  Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports.  They develop around actinotrichia as part of the dermal exoskeleton." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13]
synonym: "dorsal fin lepidotrichia" EXACT PLURAL []
synonym: "dorsal fin ray" EXACT []
xref: TAO:0001418
is_a: ZFA:0001554 ! lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001124 ! dorsal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001419
name: dorsal fin pterygiophore
namespace: zebrafish_anatomy
def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13]
synonym: "dorsal fin support" EXACT []
xref: TAO:0001419
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001124 ! dorsal fin skeleton
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001420
name: anal fin pterygiophore
namespace: zebrafish_anatomy
def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anal fin radial" RELATED []
xref: TAO:0001420
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000167 ! anal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001421
name: anal fin lepidotrichium
namespace: zebrafish_anatomy
def: "Lepidotrichium which is part of the anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anal fin lepidotrichia" EXACT PLURAL []
synonym: "anal fin ray" EXACT []
xref: TAO:0001421
is_a: ZFA:0001554 ! lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000167 ! anal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001422
name: hyosymplectic cartilage
namespace: zebrafish_anatomy
def: "Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hyomandibular cartilage" EXACT []
xref: TAO:0001422
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001401 ! dorsal hyoid arch
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001423
name: parachordal cartilage
namespace: zebrafish_anatomy
def: "Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "parachordal cartilages" EXACT PLURAL []
xref: TAO:0001423
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000189 ! otic region
relationship: part_of ZFA:0001414 ! occipital region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001424
name: chondrocranium
namespace: zebrafish_anatomy
alt_id: ZFA:0000377
def: "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "chondocranium" EXACT []
synonym: "neurocranium" RELATED []
xref: TAO:0001424
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001425
name: basal plate cartilage
namespace: zebrafish_anatomy
synonym: "basal plate cartilages" EXACT PLURAL []
xref: TAO:0001425
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001423 ! parachordal cartilage
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001426
name: posterior naris
namespace: zebrafish_anatomy
def: "Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit." [ZFIN:ZDB-PUB-961014-399]
synonym: "excurrent nostril" EXACT [ZFIN:ZDB-PUB-961014-399]
synonym: "posterior nares" EXACT PLURAL []
xref: TAO:0001426
is_a: ZFA:0000550 ! naris
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001427
name: anterior naris
namespace: zebrafish_anatomy
def: "Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit." [ZFIN:ZDB-PUB-961014-399]
synonym: "anterior nares" EXACT PLURAL []
synonym: "incurrent nostril" EXACT [ZFIN:ZDB-PUB-961014-399]
xref: TAO:0001427
is_a: ZFA:0000550 ! naris
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001428
name: olfactory rosette
namespace: zebrafish_anatomy
def: "The highly folded olfactory epithelium." [GOC:mh, ISBN:9789812388216, ORCiD:0000-0001-9114-8737]
comment: Olfactory epithelium may be part of olfactory rosette. \nThe epithelium exists before becoming folded into the rosette.
synonym: "olfactory rosettes" EXACT PLURAL []
xref: TAO:0001428
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000047 ! peripheral olfactory organ
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001429
name: raphe nucleus
namespace: zebrafish_anatomy
def: "Ventral hindbrain nuclei just caudal to the interpeduncular nucleus." [ZFIN:ZDB-PUB-100202-7]
synonym: "median raphe nucleus" EXACT [ZFIN:ZDB-PUB-100202-7]
xref: TAO:0001429
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000241 ! midline column
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001430
name: pneumatic duct
namespace: zebrafish_anatomy
def: "A duct connecting the esophagus to the posterior chamber of the swim bladder." [ZFIN:ZDB-PUB-060306-11]
xref: TAO:0001430
is_a: ZFA:0005171 ! duct
relationship: continuous_with ZFA:0000204 ! esophagus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001431
name: primitive olfactory epithelium
namespace: zebrafish_anatomy
xref: TAO:0001431
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000048 ! olfactory placode
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001432
name: anterior sclerotic bone
namespace: zebrafish_anatomy
def: "Sclerotic bone that is located anterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anterior sclerotic bones" EXACT PLURAL []
xref: TAO:0001432
is_a: ZFA:0001411 ! sclerotic bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001433
name: posterior sclerotic bone
namespace: zebrafish_anatomy
def: "Sclerotic bone that is located posterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "posterior sclerotic bones" EXACT PLURAL []
xref: TAO:0001433
is_a: ZFA:0001411 ! sclerotic bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001434
name: floor plate neural tube
namespace: zebrafish_anatomy
def: "Floor plate that is part of the neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880]
xref: TAO:0001434
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000887 ! floor plate neural rod
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000022 ! floor plate
relationship: part_of ZFA:0001135 ! neural tube
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001435
name: lateral wall neural tube
namespace: zebrafish_anatomy
def: "Portion of tissue on the side of the lumen of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001435
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001135 ! neural tube
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001436
name: roof plate neural tube region
namespace: zebrafish_anatomy
def: "Roof plate that is part of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001436
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001135 ! neural tube
relationship: part_of ZFA:0007058 ! roof plate
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0001437
name: ductus communicans
namespace: zebrafish_anatomy
def: "The constriction between the anterior and posterior chambers of the swim bladder.  There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening." [ZFIN:ZDB-PUB-060306-11]
xref: TAO:0001437
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000076 ! swim bladder
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001438
name: coelom
namespace: zebrafish_anatomy
def: "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "body cavity" EXACT []
xref: TAO:0001438
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001115 ! trunk
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001439
name: anatomical system
namespace: zebrafish_anatomy
def: "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "anatomical systems" EXACT PLURAL []
xref: CARO:0000011
xref: TAO:0001439
is_a: ZFA:0001512 ! anatomical group
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001094 ! whole organism
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001440
name: rhombic lip
namespace: zebrafish_anatomy
def: "The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001440
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001441
name: lower rhombic lip
namespace: zebrafish_anatomy
def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8.  Gives rise to several brainstem nuclei and choroid plexus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001441
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: part_of ZFA:0000153 ! rhombomere 8
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: part_of ZFA:0000949 ! rhombomere 7
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: part_of ZFA:0001440 ! rhombic lip
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001442
name: upper rhombic lip
namespace: zebrafish_anatomy
def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001442
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: part_of ZFA:0001440 ! rhombic lip
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001443
name: choroid plexus
namespace: zebrafish_anatomy
def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001443
is_a: ZFA:0000099 ! brain vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001444
name: choroid plexus third ventricle
namespace: zebrafish_anatomy
def: "Choroid plexus that is part of the third ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "diencephalic choroid plexus " EXACT []
xref: TAO:0001444
is_a: ZFA:0001443 ! choroid plexus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000161 ! third ventricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001445
name: choroid plexus tectal ventricle
namespace: zebrafish_anatomy
def: "Choroid plexus that is part of the tectal ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "choroid plexus tectal ventricles" EXACT PLURAL []
xref: TAO:0001445
is_a: ZFA:0001443 ! choroid plexus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000159 ! tectal ventricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001446
name: choroid plexus fourth ventricle
namespace: zebrafish_anatomy
def: "Choroid plexus that is part of the fourth ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001446
is_a: ZFA:0001443 ! choroid plexus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000110 ! fourth ventricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001447
name: choroid plexus telencephalic ventricle
namespace: zebrafish_anatomy
def: "Choroid plexus that is part of the telencephalic ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001447
is_a: ZFA:0001443 ! choroid plexus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000696 ! telencephalic ventricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001448
name: ultimobranchial body
namespace: zebrafish_anatomy
def: "Glands that produce calcitonin.  In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus." [ZFIN:ZDB-PUB-060517-11]
synonym: "ultimobranchial bodies" EXACT PLURAL []
xref: TAO:0001448
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001158 ! endocrine system
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0001449
name: mesenchyme pelvic fin
namespace: zebrafish_anatomy
def: "Mesenchyme that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "mesenchyme pelvic fins" EXACT PLURAL []
xref: TAO:0001449
is_a: ZFA:0000393 ! mesenchyme
relationship: develops_from ZFA:0001386 ! mesoderm pelvic fin bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001184 ! pelvic fin
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001450
name: apical ectodermal ridge pelvic fin
namespace: zebrafish_anatomy
def: "Apical ectodermal ridge that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "apical ectodermal ridge pelvic fins" EXACT PLURAL []
xref: TAO:0001450
is_a: ZFA:0001702 ! apical ectodermal ridge
relationship: develops_from ZFA:0001385 ! apical ectodermal ridge pelvic fin bud
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001184 ! pelvic fin
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001451
name: zone of polarizing activity pectoral fin bud
namespace: zebrafish_anatomy
def: "A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and  thereby provides positional information to the developing bud." [ZFIN:ZDB-PUB-060616-55]
synonym: "ZPA" RELATED []
xref: TAO:0001451
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000789 ! mesoderm pectoral fin bud
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001452
name: zone of polarizing activity pelvic fin bud
namespace: zebrafish_anatomy
def: "A small group of mesodermal cells located at the posterior margin of the developing fin bud.  The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud." [ZFIN:ZDB-PUB-060616-55]
synonym: "ZPA" RELATED []
xref: TAO:0001452
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001386 ! mesoderm pelvic fin bud
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001453
name: pectoral fin field
namespace: zebrafish_anatomy
def: "Embryonic region that develops into the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pectoral fin fields" EXACT PLURAL []
xref: TAO:0001453
is_a: ZFA:0001105 ! embryonic structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0005042 ! posterior lateral plate mesoderm
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001454
name: pelvic fin field
namespace: zebrafish_anatomy
def: "Portion of tissue in the pelvic region that develops into the pelvic fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic fin fields" EXACT PLURAL []
xref: TAO:0001454
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: part_of ZFA:0005042 ! posterior lateral plate mesoderm
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001455
name: scapulocoracoid
namespace: zebrafish_anatomy
def: "The cartilage from which both the scapula and coracoid develop." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "coraco-scapular cartilage" EXACT []
synonym: "scapulo-coracoid cartilage" EXACT []
xref: TAO:0001455
is_a: ZFA:0000257 ! pectoral fin cartilage
relationship: end ZFS:0000041 ! larval:days 21-29
relationship: part_of ZFA:0000407 ! pectoral girdle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001456
name: pectoral fin endoskeletal disc
namespace: zebrafish_anatomy
def: "A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998)." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "fin plate cartilage" EXACT []
xref: TAO:0001456
is_a: ZFA:0000257 ! pectoral fin cartilage
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0001457
name: postcranial axial cartilage
namespace: zebrafish_anatomy
def: "Cartilage which is part of the axial skeleton." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "postcranial axial cartilages" EXACT PLURAL []
xref: TAO:0001457
is_a: ZFA:0001501 ! cartilage element
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000317 ! postcranial axial skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001458
name: cranial cartilage
namespace: zebrafish_anatomy
def: "Cartilage which is part of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cranial cartilages" EXACT PLURAL []
xref: TAO:0001458
is_a: ZFA:0001501 ! cartilage element
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001459
name: pelvic fin cartilage
namespace: zebrafish_anatomy
def: "Cartilage which is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic fin cartilages" EXACT PLURAL []
xref: TAO:0001459
is_a: ZFA:0001543 ! paired fin cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001387 ! pelvic fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001460
name: pharyngeal arch cartilage
namespace: zebrafish_anatomy
synonym: "pharyngeal arch cartilages" EXACT PLURAL []
synonym: "splanchnocranium cartilage" EXACT []
xref: TAO:0001460
is_a: ZFA:0001458 ! cranial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001216 ! splanchnocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001461
name: chondrocranium cartilage
namespace: zebrafish_anatomy
def: "Cartilage that is part of the chondrocranium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "neurocranium cartilage" EXACT []
xref: TAO:0001461
is_a: ZFA:0001458 ! cranial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001424 ! chondrocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001462
name: somite border
namespace: zebrafish_anatomy
def: "Anatomical surface separating somites." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "somite border cell" EXACT PLURAL []
synonym: "somite boundary" RELATED []
xref: TAO:0001462
is_a: ZFA:0005594 ! anatomical surface
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000155 ! somite
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0001463
name: melanophore stripe
namespace: zebrafish_anatomy
def: "Surface structure composed of an array of melanophores arranged in a stripe.  Stripes are oriented from rostral to caudal." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "melanophore stripes" EXACT PLURAL []
xref: TAO:0001463
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001464
name: retinal outer nuclear layer
namespace: zebrafish_anatomy
def: "The layer within the retina where the photoreceptor cell bodies reside." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "retinal outer nuclear layers" EXACT PLURAL []
xref: TAO:0001464
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001465
name: photoreceptor inner segment layer
namespace: zebrafish_anatomy
def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "photoreceptor inner segment layers" EXACT PLURAL []
xref: TAO:0001465
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000143 ! retinal photoreceptor layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001466
name: photoreceptor outer segment layer
namespace: zebrafish_anatomy
def: "Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-110811-12]
synonym: "photoreceptor outer segment layers" EXACT PLURAL []
xref: TAO:0001466
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000143 ! retinal photoreceptor layer
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001467
name: pharyngeal mesoderm
namespace: zebrafish_anatomy
xref: TAO:0001467
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000056 ! pharynx
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001468
name: anterior lateral line system
namespace: zebrafish_anatomy
def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0001468
is_a: ZFA:0000034 ! lateral line system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001469
name: lateral line
namespace: zebrafish_anatomy
def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [DOI:10.1159/000115896, GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lateral lines" EXACT PLURAL []
xref: TAO:0001469
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000034 ! lateral line system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001470
name: anterior lateral line
namespace: zebrafish_anatomy
def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "anterior lateral lines" EXACT PLURAL []
xref: TAO:0001470
is_a: ZFA:0001469 ! lateral line
relationship: develops_from ZFA:0005117 ! anterior lateral line primordium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001468 ! anterior lateral line system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0001471
name: posterior lateral line system
namespace: zebrafish_anatomy
def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0001471
is_a: ZFA:0000034 ! lateral line system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001472
name: anterior lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast anterior" EXACT []
xref: TAO:0001472
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001470 ! anterior lateral line
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001473
name: deep blastomere
namespace: zebrafish_anatomy
def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres." [ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "deep blastomeres" EXACT PLURAL []
xref: TAO:0001473
is_a: ZFA:0000093 ! blastomere
relationship: end ZFS:0000015 ! blastula:dome
relationship: start ZFS:0000007 ! cleavage:64-cell

[Term]
id: ZFA:0001474
name: presumptive cardinal organ
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0001475
name: presumptive organ
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0001476
name: presumptive organ system
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0001477
name: portion of tissue
namespace: zebrafish_anatomy
def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000043
xref: TAO:0001477
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000012 ! blastula:high

[Term]
id: ZFA:0001478
name: anatomical cluster
namespace: zebrafish_anatomy
def: "Anatomical group that has its parts adjacent to one another." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000041
xref: TAO:0001478
is_a: ZFA:0001512 ! anatomical group
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000012 ! blastula:high

[Term]
id: ZFA:0001479
name: lateral line nerve
namespace: zebrafish_anatomy
def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lateral line nerves" EXACT PLURAL []
xref: TAO:0001479
is_a: ZFA:0007009 ! nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000034 ! lateral line system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001480
name: dorsal anterior lateral line nerve
namespace: zebrafish_anatomy
def: "Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3]
synonym: "anterodorsal lateral line nerve" EXACT []
synonym: "dorsal anterior lateral line nerves" EXACT PLURAL []
xref: TAO:0001480
is_a: ZFA:0001479 ! lateral line nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000425 ! anterior lateral line nerve
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001481
name: ventral anterior lateral line nerve
namespace: zebrafish_anatomy
def: "Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "anteroventral lateral line nerve" EXACT []
synonym: "ventral anterior lateral line nerves" EXACT PLURAL []
xref: TAO:0001481
is_a: ZFA:0001479 ! lateral line nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000425 ! anterior lateral line nerve
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001482
name: middle lateral line nerve
namespace: zebrafish_anatomy
def: "Nerve fibers originating from the middle lateral line ganglion.  These fibers innervate the middle lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "middle lateral line nerves" EXACT PLURAL []
xref: TAO:0001482
is_a: ZFA:0001479 ! lateral line nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000175 ! posterior lateral line nerve
relationship: part_of ZFA:0005114 ! middle lateral line system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001483
name: middle lateral line ganglion
namespace: zebrafish_anatomy
def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "middle lateral line ganglia" EXACT PLURAL []
xref: TAO:0001483
is_a: ZFA:0000120 ! lateral line ganglion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005114 ! middle lateral line system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001484
name: superficial blastomere
namespace: zebrafish_anatomy
def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres." [ZFIN:ZDB-PUB-961014-576]
subset: cell_slim
synonym: "superficial blastomeres" EXACT PLURAL []
xref: TAO:0001484
is_a: ZFA:0000093 ! blastomere
relationship: end ZFS:0000015 ! blastula:dome
relationship: start ZFS:0000007 ! cleavage:64-cell

[Term]
id: ZFA:0001485
name: basal lamina
namespace: zebrafish_anatomy
def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "basal laminae" EXACT PLURAL []
xref: CARO:0000065
xref: TAO:0001485
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001486
name: epithelium
namespace: zebrafish_anatomy
def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000066
xref: TAO:0001486
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001487
name: portion of organism substance
namespace: zebrafish_anatomy
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000004
xref: TAO:0001487
is_a: ZFA:0100000 ! zebrafish anatomical entity
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001094 ! whole organism
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001488
name: multi-tissue structure
namespace: zebrafish_anatomy
def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "multi-tissue structures" EXACT PLURAL []
xref: CARO:0000055
xref: TAO:0001488
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001489
name: compound organ component
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is part of a compound organ." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "compound organ components" EXACT PLURAL []
xref: CARO:0000019
xref: TAO:0001489
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001490
name: cavitated compound organ
namespace: zebrafish_anatomy
def: "Compound organ that contains one or more macroscopic anatomical spaces." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cavitated compound organs" EXACT PLURAL []
xref: CARO:0000072
xref: TAO:0001490
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001491
name: solid compound organ
namespace: zebrafish_anatomy
def: "Compound organ that does not contain macroscopic anatomical spaces." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "solid compound organs" EXACT PLURAL []
xref: CARO:0000074
xref: TAO:0001491
is_a: ZFA:0000496 ! compound organ
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001492
name: simple organ
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is not part of a compound organ." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "simple organs" EXACT PLURAL []
xref: CARO:0000021
xref: TAO:0001492
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001493
name: atypical epithelium
namespace: zebrafish_anatomy
def: "Epithelium that consists of epithelial cells not arranged in one or more layers." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "atypical epithelia" EXACT PLURAL []
xref: CARO:0000071
xref: TAO:0001493
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001494
name: multilaminar epithelium
namespace: zebrafish_anatomy
def: "Epithelium that consists of more than one layer of epithelial cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000069
xref: TAO:0001494
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001495
name: unilaminar epithelium
namespace: zebrafish_anatomy
def: "Epithelium that consists of a single layer of epithelial cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "unilaminar epithelia" EXACT PLURAL []
xref: CARO:0000073
xref: TAO:0001495
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001496
name: simple columnar epithelium
namespace: zebrafish_anatomy
def: "Unilaminar epithelium that consists of a single layer of columnar cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "simple columnar epithelia" EXACT PLURAL []
xref: CARO:0000068
xref: TAO:0001496
is_a: ZFA:0001495 ! unilaminar epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001497
name: simple cuboidal epithelium
namespace: zebrafish_anatomy
def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "simple cuboidal epithelia" EXACT PLURAL []
xref: CARO:0000067
xref: TAO:0001497
is_a: ZFA:0001495 ! unilaminar epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001498
name: simple squamous epithelium
namespace: zebrafish_anatomy
def: "Unilaminar epithelium that consists of a single layer of squamous cells." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "simple squamous epithelia" EXACT PLURAL []
xref: CARO:0000070
xref: TAO:0001498
is_a: ZFA:0001495 ! unilaminar epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001499
name: esophageal epithelium
namespace: zebrafish_anatomy
def: "Simple columnar epithelium that lines the esophagus." [ZFIN:ZDB-PUB-070426-1]
xref: TAO:0001499
is_a: ZFA:0001496 ! simple columnar epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000204 ! esophagus
relationship: part_of ZFA:0005123 ! gut epithelium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001500
name: auditory capsule
namespace: zebrafish_anatomy
def: "Bilaterally paired cartilage encasing the semicircular canals of the inner ear." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "otic capsule" EXACT []
xref: TAO:0001500
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001501
name: cartilage element
namespace: zebrafish_anatomy
def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
synonym: "cartilages" EXACT PLURAL []
xref: TAO:0001501
xref: VSAO:0000000
is_a: ZFA:0005494 ! skeletal element
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001502
name: epiphyseal bar
namespace: zebrafish_anatomy
def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001502
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001503
name: lamina orbitonasalis
namespace: zebrafish_anatomy
def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "laminas orbitonasalis" EXACT PLURAL []
xref: TAO:0001503
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001504
name: occipital arch cartilage
namespace: zebrafish_anatomy
def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "occipital arch cartilages" EXACT PLURAL []
xref: TAO:0001504
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000038 ! larval:day 6
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001505
name: taenia marginalis anterior
namespace: zebrafish_anatomy
def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "orbital cartilage" RELATED []
synonym: "taeniae marginales anterior" EXACT PLURAL []
xref: TAO:0001505
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000290 ! sphenoid region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001506
name: tectum synoticum
namespace: zebrafish_anatomy
def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001506
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001507
name: trabecula cranii
namespace: zebrafish_anatomy
def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "trabeculae cranii" EXACT PLURAL []
xref: TAO:0001507
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001321 ! neurocranial trabecula
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001508
name: trabecula communis
namespace: zebrafish_anatomy
def: "Cartilage formed via medial fusion between bilaterally paired trabecula cranii." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "trabecular bar" EXACT []
xref: TAO:0001508
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001321 ! neurocranial trabecula
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001509
name: sclerotic cartilage
namespace: zebrafish_anatomy
def: "Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye.  It lies between t lies between the sclera and the optic choroid." [ZFIN:ZDB-PUB-070629-20]
synonym: "scleral cartilage" RELATED []
synonym: "sclerotic cartilages" EXACT PLURAL []
xref: TAO:0001509
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001510
name: basihyal cartilage
namespace: zebrafish_anatomy
def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "basihyal" RELATED []
xref: TAO:0001510
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001511
name: interhyal cartilage
namespace: zebrafish_anatomy
alt_id: ZFA:0000218
def: "The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "interhyal bone" EXACT []
synonym: "stylohyal" EXACT []
xref: TAO:0001511
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001402 ! ventral hyoid arch
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0001512
name: anatomical group
namespace: zebrafish_anatomy
alt_id: ZFA:0001255
def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: CARO:0000054
xref: TAO:0001512
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001513
name: dermomyotome
namespace: zebrafish_anatomy
def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-060124-14]
synonym: "dermomyotomes" EXACT PLURAL []
xref: TAO:0001513
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0000155 ! somite
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001514
name: bone element
namespace: zebrafish_anatomy
def: "Skeletal element that is composed of bone tissue." [VSAO:curator]
synonym: "bones" EXACT PLURAL []
xref: TAO:0001514
xref: VSAO:0000057
is_a: ZFA:0005494 ! skeletal element
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001515
name: taenia marginalis posterior
namespace: zebrafish_anatomy
def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "orbital cartilage" RELATED []
synonym: "taeniae  marginales posterior" EXACT PLURAL []
xref: TAO:0001515
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000290 ! sphenoid region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001516
name: ceratobranchial cartilage
namespace: zebrafish_anatomy
def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "ceratobranchial cartilages" EXACT PLURAL []
xref: TAO:0001516
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001517
name: ceratobranchial 2 cartilage
namespace: zebrafish_anatomy
def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001517
is_a: ZFA:0001516 ! ceratobranchial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0001518
name: ceratobranchial 3 cartilage
namespace: zebrafish_anatomy
def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001518
is_a: ZFA:0001516 ! ceratobranchial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0001519
name: ceratobranchial 4 cartilage
namespace: zebrafish_anatomy
def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001519
is_a: ZFA:0001516 ! ceratobranchial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0001520
name: ceratobranchial 1 cartilage
namespace: zebrafish_anatomy
def: "Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1." [TAO:curator]
xref: TAO:0001520
is_a: ZFA:0001516 ! ceratobranchial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001521
name: ceratobranchial 5 cartilage
namespace: zebrafish_anatomy
def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001521
is_a: ZFA:0001516 ! ceratobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001522
name: hypobranchial cartilage
namespace: zebrafish_anatomy
def: "Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypobranchial cartilages" EXACT PLURAL []
xref: TAO:0001522
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0001523
name: hypobranchial 4 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypobranchial 4 cartilages" EXACT PLURAL []
xref: TAO:0001523
is_a: ZFA:0001522 ! hypobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001524
name: hypobranchial 1 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypobranchial 1 cartilages" EXACT PLURAL []
xref: TAO:0001524
is_a: ZFA:0001522 ! hypobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001525
name: hypobranchial 2 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypobranchial 2 cartilages" EXACT PLURAL []
xref: TAO:0001525
is_a: ZFA:0001522 ! hypobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001526
name: hypobranchial 3 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "hypobranchial 3 cartilages" EXACT PLURAL []
xref: TAO:0001526
is_a: ZFA:0001522 ! hypobranchial cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001527
name: epibranchial cartilage
namespace: zebrafish_anatomy
def: "Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone." [TAO:curator]
synonym: "epibranchial cartilages" EXACT PLURAL []
xref: TAO:0001527
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001528
name: epibranchial 1 cartilage
namespace: zebrafish_anatomy
def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001528
is_a: ZFA:0001527 ! epibranchial cartilage
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001529
name: epibranchial 3 cartilage
namespace: zebrafish_anatomy
def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001529
is_a: ZFA:0001527 ! epibranchial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001530
name: epibranchial 2 cartilage
namespace: zebrafish_anatomy
def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001530
is_a: ZFA:0001527 ! epibranchial cartilage
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001531
name: epibranchial 4 cartilage
namespace: zebrafish_anatomy
def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001531
is_a: ZFA:0001527 ! epibranchial cartilage
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001532
name: axial bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000317

[Term]
id: ZFA:0001533
name: pharyngobranchial cartilage
namespace: zebrafish_anatomy
def: "Paired cartilages that project medially from the medial tips of epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pharyngobranchial cartilages" EXACT PLURAL []
xref: TAO:0001533
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001534
name: pharyngobranchial 3 cartilage
namespace: zebrafish_anatomy
def: "Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pharyngobranchial 3 cartilages" EXACT PLURAL []
xref: TAO:0001534
is_a: ZFA:0001533 ! pharyngobranchial cartilage
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001535
name: median fin cartilage
namespace: zebrafish_anatomy
synonym: "median fin cartilages" EXACT PLURAL []
xref: TAO:0001535
is_a: ZFA:0001457 ! postcranial axial cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001536
name: pharyngobranchial 2 cartilage
namespace: zebrafish_anatomy
def: "Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pharyngobranchial 2 cartilages" EXACT PLURAL []
xref: TAO:0001536
is_a: ZFA:0001533 ! pharyngobranchial cartilage
relationship: end ZFS:0000041 ! larval:days 21-29
relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001537
name: mesocoracoid cartilage
namespace: zebrafish_anatomy
def: "Cartilage that develops initially on the medial side of the coraco-scapular cartilage." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "mesocorocoid cartilages" EXACT PLURAL []
xref: TAO:0001537
is_a: ZFA:0000257 ! pectoral fin cartilage
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001538
name: pelvic radial cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the posterior edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radial cartilages" EXACT PLURAL []
xref: TAO:0001538
is_a: ZFA:0001459 ! pelvic fin cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001539
name: basipterygium cartilage
namespace: zebrafish_anatomy
def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "basipterygium cartilages" EXACT PLURAL []
xref: TAO:0001539
is_a: ZFA:0001459 ! pelvic fin cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001540
name: pelvic radial 3 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radials 3 cartilages" EXACT PLURAL []
xref: TAO:0001540
is_a: ZFA:0001538 ! pelvic radial cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001541
name: pelvic radial 2 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radials 2 cartilages" EXACT PLURAL []
xref: TAO:0001541
is_a: ZFA:0001538 ! pelvic radial cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001542
name: pelvic radial 1 cartilage
namespace: zebrafish_anatomy
def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "pelvic radials 1 cartilages" EXACT PLURAL []
xref: TAO:0001542
is_a: ZFA:0001538 ! pelvic radial cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001543
name: paired fin cartilage
namespace: zebrafish_anatomy
def: "Cartilage which is part of one of the paired fins." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "paired fin cartilages" EXACT PLURAL []
xref: TAO:0001543
is_a: ZFA:0001501 ! cartilage element
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000027 ! paired fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001544
name: chondrocranium bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001424

[Term]
id: ZFA:0001545
name: cranial bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000737

[Term]
id: ZFA:0001546
name: pharyngeal arch bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000095
consider: ZFA:0001276

[Term]
id: ZFA:0001547
name: dermatocranium bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000863

[Term]
id: ZFA:0001548
name: axial fin bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0001123

[Term]
id: ZFA:0001549
name: paired fin bone
namespace: zebrafish_anatomy
comment: Zebrafish don't have a stomach.
is_obsolete: true
consider: ZFA:0000027

[Term]
id: ZFA:0001550
name: caudal fin lepidotrichium
namespace: zebrafish_anatomy
def: "Lepidotrichium which is part of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "caudal fin lepidotrichia" EXACT PLURAL []
synonym: "caudal fin ray" EXACT []
xref: TAO:0001550
is_a: ZFA:0001554 ! lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001551
name: pectoral fin lepidotrichium
namespace: zebrafish_anatomy
def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials.  A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pectoral fin lepidotrichia" EXACT PLURAL []
synonym: "pectoral fin ray" EXACT []
xref: TAO:0001551
is_a: ZFA:0001554 ! lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000943 ! pectoral fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001552
name: pelvic fin lepidotrichium
namespace: zebrafish_anatomy
def: "Lepidotrichium which is part of the pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pelvic fin lepidotrichia" EXACT PLURAL []
synonym: "pelvic fin ray" EXACT []
xref: TAO:0001552
is_a: ZFA:0001554 ! lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001387 ! pelvic fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001553
name: fin bone
namespace: zebrafish_anatomy
is_obsolete: true
consider: ZFA:0000027
consider: ZFA:0001123

[Term]
id: ZFA:0001554
name: lepidotrichium
namespace: zebrafish_anatomy
def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired.  Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:ZDB-PUB-031103-13]
synonym: "fin ray" EXACT []
synonym: "lepidotrichia" EXACT PLURAL []
xref: TAO:0001554
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001555
name: epibranchial ganglion
namespace: zebrafish_anatomy
def: "Cranial ganglion which develops from an epibranchial placode." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "epibranchial ganglia" EXACT PLURAL []
xref: TAO:0001555
is_a: ZFA:0000013 ! cranial ganglion
relationship: develops_from ZFA:0001294 ! epibranchial placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001556
name: sympathetic chain ganglion
namespace: zebrafish_anatomy
def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "paravertebral ganglion" EXACT []
xref: TAO:0001556
is_a: ZFA:0001573 ! trunk ganglion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001576 ! sympathetic nervous system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001557
name: pronephric glomerulus
namespace: zebrafish_anatomy
def: "Paired highly vascularized structures of the pronephros which are fused at the midline.  Responsible for blood filtration and begins to function between 40 and 48hpf." [ZFIN:ZDB-PUB-000606-4]
synonym: "pronephric glomera" EXACT []
synonym: "pronephric glomeruli" EXACT PLURAL []
synonym: "pronephric glomus " EXACT []
xref: TAO:0001557
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000151 ! pronephros
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001558
name: pronephric tubule
namespace: zebrafish_anatomy
def: "Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts." [ZFIN:ZDB-PUB-000606-4]
synonym: "ciliated neck segment" EXACT []
xref: TAO:0001558
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000151 ! pronephros
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001559
name: vertebral column
namespace: zebrafish_anatomy
xref: TAO:0001559
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000317 ! postcranial axial skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001560
name: hypural 1
namespace: zebrafish_anatomy
def: "Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001560
is_a: ZFA:0000364 ! hypural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0001561
name: hypural 2
namespace: zebrafish_anatomy
def: "Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001561
is_a: ZFA:0000364 ! hypural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0001562
name: hypural 3
namespace: zebrafish_anatomy
def: "Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001562
is_a: ZFA:0000364 ! hypural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000038 ! larval:day 6

[Term]
id: ZFA:0001563
name: hypural 4
namespace: zebrafish_anatomy
def: "Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001563
is_a: ZFA:0000364 ! hypural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001564
name: hypural 5
namespace: zebrafish_anatomy
def: "Dorsal-most hypural, that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001564
is_a: ZFA:0000364 ! hypural
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001565
name: oocyte stage II
namespace: zebrafish_anatomy
def: "Oocyte part of stage II ovarian follicle.  The stage II oocytes are characterized by the presence of cortical alveoli, a tripartite zona radiata (vitelline envelope), and a central germinal vesicle." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387]
comment: In stage II (cortical alveolus stage), oocytes are distinguished by the appearance of variably sized cortical alveoli and the vitelline envelope becomes prominent, ZDB-PUB-961014-1020.
subset: cell_slim
synonym: "cortical-alveolar oocyte" EXACT []
synonym: "oocytes stage II" EXACT PLURAL []
synonym: "previtellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387]
synonym: "Stage 2 oocyte" EXACT []
xref: TAO:0001565
is_a: ZFA:0001109 ! oocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001265 ! ovarian follicle stage II
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001566
name: oocyte stage III
namespace: zebrafish_anatomy
def: "Oocyte part of stage III ovarian follicle.  Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles." [GOC:CVS, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387]
comment: In stage III (vitellogenesis), yolk proteins appear in oocytes and yolk bodies with crystalline yolk accrue during this major growth stage. Oocytes develop the capacity to respond in vitro to the steroid 17, 20-dihydroxy-4-pregnen-3-one (DHP) by undergoing oocyte maturation  ZDB-PUB-961014-1020.
subset: cell_slim
synonym: "oocytes stage III" EXACT PLURAL []
synonym: "postvitellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387]
synonym: "Stage 3 oocyte" EXACT []
synonym: "vitellogenic oocytes" EXACT []
xref: TAO:0001566
is_a: ZFA:0001109 ! oocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001266 ! ovarian follicle stage III
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001567
name: oocyte stage I
namespace: zebrafish_anatomy
def: "Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387]
comment: Oocytes reside in nests with other oocytes (Stage IA) and then within a definitive follicle (Stage IB), where they greatly increase in size ZDB-PUB-961014-1020.
subset: cell_slim
synonym: "oocytes stage I" EXACT PLURAL []
synonym: "previtellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387]
synonym: "primary oocyte" EXACT []
synonym: "Stage 1 oocyte" EXACT []
xref: TAO:0001567
is_a: ZFA:0001109 ! oocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001263 ! ovarian follicle stage I
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001568
name: oocyte stage IV
namespace: zebrafish_anatomy
def: "Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and filled with noncrystalline yolky bodies." [GOC:CVS, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387]
comment: In stage IV (oocyte maturation), oocytes increase slightly in size, become translucent, and their yolk becomes non-crystalline as they undergo final meiotic maturation in vivo (and in response to DHP in vitro).  ZDB-PUB-961014-1020.
subset: cell_slim
synonym: "mature oocytes" EXACT []
synonym: "oocytes stage IV" EXACT PLURAL []
synonym: "postvitellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387]
synonym: "Stage 4 oocyte" EXACT []
xref: TAO:0001568
is_a: ZFA:0001109 ! oocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001264 ! ovarian follicle stage IV
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001569
name: oocyte stage V
namespace: zebrafish_anatomy
def: "Oocyte part of stage V ovarian follicle." [GOC:mh, ORCiD:0000-0001-9114-8737]
comment: In stage V (mature egg), eggs (approx. 0.75 mm) are ovulated into the ovarian lumen and are capable of fertilization  ZDB-PUB-961014-1020.
subset: cell_slim
synonym: "mature egg" EXACT []
synonym: "unactivated egg" EXACT []
xref: TAO:0001569
is_a: ZFA:0001109 ! oocyte
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000043 ! juvenile:days 45-89

[Term]
id: ZFA:0001570
name: unfertilized egg
namespace: zebrafish_anatomy
def: "A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization.  In zebrafish specified to be outside the body." [ISBN:0721662544]
comment: Outside the body.
subset: cell_slim
synonym: "activated oocyte" EXACT []
synonym: "egg" EXACT []
xref: CL:0000025
xref: TAO:0001570
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0001569 ! oocyte stage V
relationship: end ZFS:0000001 ! zygote:1-cell
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001571
name: postovulatory follicle
namespace: zebrafish_anatomy
def: "A follicle that has undergone ovulation and no longer contains an oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "postovulatory follicles" EXACT PLURAL []
xref: TAO:0001571
is_a: ZFA:0001110 ! ovarian follicle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0001572
name: superior cervical ganglion
namespace: zebrafish_anatomy
def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "SCG" RELATED []
synonym: "superior sympathetic cervical ganglion" EXACT []
xref: TAO:0001572
is_a: ZFA:0001573 ! trunk ganglion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001576 ! sympathetic nervous system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001573
name: trunk ganglion
namespace: zebrafish_anatomy
def: "Ganglion which is located in the trunk." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "trunk ganglia" EXACT PLURAL []
xref: TAO:0001573
is_a: ZFA:0000190 ! ganglion
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0001574
name: autonomic nervous system
namespace: zebrafish_anatomy
def: "Nervous system that innervates smooth muscle, cardiac muscle and glands.  Regulates involuntary process such as blood circulation and digestion.  Has subdivisions sympathetic nervous system and parasympathetic nervous system." [GOC:cvs, GOC:ymb, ISBN:0314472304, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "ANS" EXACT []
xref: TAO:0001574
is_a: ZFA:0000396 ! nervous system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001575
name: parasympathetic nervous system
namespace: zebrafish_anatomy
def: "Autonomic nervous system where the cell bodies lie in the brain and sacral region of the spinal cord.   The neurons are mainly cholinergic." [GOC:GOC, GOC:ymb, ISBN:0080923437, ORCiD:0000-0002-9900-7880]
xref: TAO:0001575
is_a: ZFA:0001574 ! autonomic nervous system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001576
name: sympathetic nervous system
namespace: zebrafish_anatomy
def: "Autonomic nervous system that originates beginning at the thoracic and lumbar areas of the spinal cord.  Sympathetic neurons are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides." [GOC:cvs, GOC:ymb, ISBN:0080923437, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0001576
is_a: ZFA:0001574 ! autonomic nervous system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001577
name: premaxilla ascending process
namespace: zebrafish_anatomy
def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "premaxilla ascending processes" EXACT PLURAL []
xref: TAO:0001577
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000567 ! premaxilla
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001578
name: anterior dorsomedial process of autopalatine
namespace: zebrafish_anatomy
def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880]
synonym: "anterior dorsomedial process of autopalatines" EXACT PLURAL []
xref: TAO:0001578
is_a: ZFA:0001637 ! bony projection
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000620 ! autopalatine
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001579
name: ural vertebra 2
namespace: zebrafish_anatomy
def: "Ural vertebra that is the second vertebra posterior to preural centrum 1." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001579
is_a: ZFA:0001189 ! vertebra
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001580
name: neurocranium
namespace: zebrafish_anatomy
def: "Anatomical cluster that is the regional skeletal system surrounding the brain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "braincase" EXACT []
xref: TAO:0001580
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000737 ! cranium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001581
name: ural centrum 2
namespace: zebrafish_anatomy
def: "A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone." [TAO:curator]
xref: TAO:0001581
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001579 ! ural vertebra 2
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001582
name: non-Weberian precaudal vertebra
namespace: zebrafish_anatomy
def: "Precaudal vertebra that is not a Weberian vertebra.  Vertebra 5 through 14." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "non-Weberian precaudal vertebrae" EXACT PLURAL []
xref: TAO:0001582
is_a: ZFA:0000263 ! precaudal vertebra
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001583
name: preural centrum 1+ ural centrum 1
namespace: zebrafish_anatomy
def: "Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish." [ZFIN:ZDB-PUB-031103-13]
synonym: "urostyle " RELATED []
xref: TAO:0001583
is_a: ZFA:0001189 ! vertebra
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001584
name: caudal fin procurrent ray
namespace: zebrafish_anatomy
def: "Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "caudal procurrent lepidotrichium" EXACT []
synonym: "caudal procurrent ray " RELATED []
xref: TAO:0001584
is_a: ZFA:0001550 ! caudal fin lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001585
name: caudal fin principal ray
namespace: zebrafish_anatomy
def: "Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented and branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone.  There are 19 principal caudal rays, with 10 in the dorsal lobe and nine in the ventral lobe. The dorsal lobe rays articulate with hypurals 3-5." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13]
synonym: "caudal principal lepidotrichium" EXACT []
synonym: "caudal principal ray" EXACT []
xref: TAO:0001585
is_a: ZFA:0001550 ! caudal fin lepidotrichium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001586
name: pectoral fin radial
namespace: zebrafish_anatomy
def: "Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:curator]
synonym: "pectoral fin radials" EXACT PLURAL []
xref: TAO:0001586
is_a: ZFA:0000271 ! radial
relationship: develops_from ZFA:0001456 ! pectoral fin endoskeletal disc
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000943 ! pectoral fin skeleton
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001587
name: pectoral fin proximal radial
namespace: zebrafish_anatomy
def: "Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid)." [TAO:curator]
xref: TAO:0001587
is_a: ZFA:0001586 ! pectoral fin radial
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001588
name: pectoral fin distal radial
namespace: zebrafish_anatomy
def: "Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired." [TAO:curator]
synonym: "pectoral fin distal radials" EXACT PLURAL []
xref: TAO:0001588
is_a: ZFA:0001586 ! pectoral fin radial
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001589
name: propterygium
namespace: zebrafish_anatomy
def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:Curator]
synonym: "propterygia" EXACT PLURAL []
xref: TAO:0001589
is_a: ZFA:0001588 ! pectoral fin distal radial
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001590
name: dermal bone
namespace: zebrafish_anatomy
def: "Intramembranous bone that forms superficially in the organism.  Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-120529-44]
synonym: "dermal bones" EXACT PLURAL []
xref: TAO:0001590
is_a: ZFA:0001635 ! intramembranous bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001591
name: endochondral bone
namespace: zebrafish_anatomy
def: "Replacement bone that forms within cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "endochondral bones" EXACT PLURAL []
xref: TAO:0001591
is_a: ZFA:0001693 ! chondral bone
is_a: ZFA:0005620 ! endochondral element
relationship: develops_from ZFA:0001501 ! cartilage element
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001592
name: claustrum bone
namespace: zebrafish_anatomy
def: "Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001592
is_a: ZFA:0000461 ! Weberian ossicle
is_a: ZFA:0001591 ! endochondral bone
is_a: ZFA:0001636 ! membrane bone
relationship: develops_from ZFA:0000637 ! claustrum cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001593
name: quadrate ventral process
namespace: zebrafish_anatomy
def: "An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "quadrate ventral processes" EXACT PLURAL []
xref: TAO:0000224
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000621 ! quadrate
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001594
name: preopercle horizontal limb
namespace: zebrafish_anatomy
def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "preopercle anterior arm" EXACT [ZFIN:ZDB-PUB-961014-192]
synonym: "preopercle horizontal arm" EXACT []
synonym: "preopercle lower limb" EXACT []
synonym: "preopercle ventral arm" EXACT [ZFIN:ZDB-PUB-961014-192]
xref: TAO:0000289
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005631 ! preopercle horizontal limb-symplectic joint
relationship: part_of ZFA:0000264 ! preopercle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001595
name: preopercle vertical limb
namespace: zebrafish_anatomy
def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "preopercle dorsal arm" EXACT [ZFIN:ZDB-PUB-961014-192.]
synonym: "preopercle posterior arm" EXACT [ZFIN:ZDB-PUB-961014-192.]
synonym: "preopercle upper limb" EXACT []
synonym: "preopercle vertical arm" EXACT []
xref: TAO:0000336
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: overlaps ZFA:0005632 ! preopercle vertical limb-hyomandibula joint
relationship: part_of ZFA:0000264 ! preopercle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001596
name: joint
namespace: zebrafish_anatomy
def: "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "joints" EXACT PLURAL []
xref: TAO:0000367
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000434 ! skeletal system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001597
name: exoccipital posteroventral region
namespace: zebrafish_anatomy
def: "Endochondral bone which is the posteroventral region of the exoccipital bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "exoccipitals posteroventral regions" EXACT PLURAL []
xref: TAO:0000348
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000661 ! exoccipital
relationship: part_of ZFA:0001627 ! lagenar capsule
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001598
name: basioccipital posterodorsal region
namespace: zebrafish_anatomy
def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0000337
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000472 ! basioccipital
relationship: part_of ZFA:0001627 ! lagenar capsule
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001599
name: os suspensorium medial flange
namespace: zebrafish_anatomy
xref: TAO:0002214
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001171 ! os suspensorium
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001600
name: neural spine 4
namespace: zebrafish_anatomy
def: "Neural spine that is located on the fourth vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001546
is_a: ZFA:0001336 ! neural spine
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001601
name: manubrium
namespace: zebrafish_anatomy
def: "Anterior branch of the intercalarium.  The manubrium develops as a simple antero-lateral membrane bone extension from basidorsal 2." [ZFIN:ZDB-PUB-031103-13]
synonym: "anterior branch of the intercalarium" RELATED []
synonym: "anterior process of the intercalarium" EXACT []
synonym: "horizontal process" EXACT []
synonym: "manubrium incudus" EXACT []
xref: TAO:0001553
is_a: ZFA:0001636 ! membrane bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000525 ! intercalarium
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001602
name: intercalarium ascending process
namespace: zebrafish_anatomy
def: "Bony process that develops as a dorsally  projecting cartilaginous extension from the basidorsal.  The ascending process is longer relative to the manubrium in larvae (5.1-11.0 mm). By 13.0 mm, the ascending process appears highly reduced in size." [ZFIN:ZDB-PUB-031103-13]
xref: TAO:0001548
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000525 ! intercalarium
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001603
name: intercalarium articulating process
namespace: zebrafish_anatomy
def: "Portion of the intercalarium that  ossifies from the cartilage condensation and articulates with a groove in centrum 2." [ZFIN:ZDB-PUB-031103-13]
synonym: "articular process" RELATED []
xref: TAO:0001549
is_a: ZFA:0001591 ! endochondral bone
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000525 ! intercalarium
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001604
name: caudal fin upper lobe
namespace: zebrafish_anatomy
def: "Surface structure that is the dorsal portion of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "caudal fin dorsal lobe" EXACT []
xref: TAO:0001593
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001058 ! caudal fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001605
name: caudal fin lower lobe
namespace: zebrafish_anatomy
def: "Surface structure that is the ventral portion of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "caudal fin ventral lobe" EXACT []
xref: TAO:0001594
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001058 ! caudal fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001606
name: pharyngeal arch 3
namespace: zebrafish_anatomy
synonym: "branchial arch 1" EXACT []
synonym: "gill arch 1" EXACT []
synonym: "visceral arch 3" EXACT []
xref: TAO:0001598
is_a: ZFA:0001613 ! pharyngeal arch 3-7
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001607
name: pharyngeal arch 4
namespace: zebrafish_anatomy
synonym: "branchial arch 2" EXACT []
synonym: "gill arch 2" EXACT []
synonym: "visceral arch 4" EXACT []
xref: TAO:0001599
is_a: ZFA:0001613 ! pharyngeal arch 3-7
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001608
name: pharyngeal arch 5
namespace: zebrafish_anatomy
synonym: "branchial arch 3" EXACT []
synonym: "gill arch 3" EXACT []
synonym: "visceral arch 5" EXACT []
xref: TAO:0001600
is_a: ZFA:0001613 ! pharyngeal arch 3-7
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001609
name: pharyngeal arch 6
namespace: zebrafish_anatomy
synonym: "branchial arch 4" EXACT []
synonym: "gill arch 4" EXACT []
synonym: "visceral arch 6" EXACT []
xref: TAO:0001601
is_a: ZFA:0001613 ! pharyngeal arch 3-7
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001610
name: pharyngeal arch 7
namespace: zebrafish_anatomy
synonym: "branchial arch 5" EXACT []
synonym: "gill arch 5" EXACT []
synonym: "visceral arch 7" EXACT []
xref: TAO:0001602
is_a: ZFA:0001613 ! pharyngeal arch 3-7
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001611
name: pharyngeal arch 2
namespace: zebrafish_anatomy
def: "The second pharyngeal arch, also known as the hyoid arch, forms jaw support structures.  Anteriorly positioned cranial neural crest cells, which align with rhombomeres 4/5, contribute to the hyoid arch structures including the ceratohyal and hyosymplectic cartilages." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020904-6, ZFIN:ZDB-PUB-040726-7, ZFIN:ZDB-PUB-961014-985]
synonym: "hyoid arch" EXACT []
synonym: "visceral arch 2" EXACT []
xref: TAO:0001596
is_a: ZFA:0001306 ! pharyngeal arch
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001612
name: pharyngeal arch 1
namespace: zebrafish_anatomy
def: "The first pharyngeal arch, also known as the mandibular arch, forms the jaw. The first pharyngeal arch gives rise to elements of the jaw, with the most anteriorly positioned cranial neural crest cells contributing to mandibular arch structures, including Meckel's and palatoquadrate cartilages that constitute the lower and upper jaw respectively." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020904-6, ZFIN:ZDB-PUB-121120-12, ZFIN:ZDB-PUB-961014-985]
synonym: "mandibular arch" EXACT []
synonym: "visceral arch 1" EXACT []
xref: TAO:0001595
is_a: ZFA:0001306 ! pharyngeal arch
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001613
name: pharyngeal arch 3-7
namespace: zebrafish_anatomy
alt_id: ZFA:0000515
alt_id: ZFA:0000625
synonym: "branchial arch" EXACT []
synonym: "branchial arches" EXACT PLURAL []
synonym: "branchial bar" EXACT []
synonym: "branchial bars" EXACT PLURAL []
synonym: "gill arch" EXACT []
synonym: "gill arches 1-5" EXACT []
synonym: "visceral arches 3-7" EXACT []
xref: TAO:0000625
xref: TAO:0001597
is_a: ZFA:0001306 ! pharyngeal arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000056 ! pharynx
relationship: part_of ZFA:0000354 ! gill
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001614
name: atrial endocardium
namespace: zebrafish_anatomy
def: "Endocardium that is part of the atrium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002169
is_a: ZFA:0001320 ! endocardium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000471 ! atrium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001615
name: ventricular endocardium
namespace: zebrafish_anatomy
def: "Endocardium that is part of the cardiac ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002247
is_a: ZFA:0001320 ! endocardium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000009 ! cardiac ventricle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001616
name: atrioventricular canal endocardium
namespace: zebrafish_anatomy
def: "Endocardium that is part of the atrioventricular canal." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002170
is_a: ZFA:0001320 ! endocardium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001315 ! atrioventricular canal
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001617
name: otolith
namespace: zebrafish_anatomy
alt_id: ZFA:0000139
def: "Portion of organism substance composed of calcium carbonate located in the otolith organ and positioned over a sensory macula; two form in each vesicle during the late segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/oto/otolith.html'>otolith</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "immature otolith" RELATED []
synonym: "immature otoliths" RELATED PLURAL []
synonym: "statolith" EXACT []
xref: TAO:0001621
is_a: ZFA:0001487 ! portion of organism substance
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000051 ! otic vesicle
relationship: part_of ZFA:0000559 ! otolith organ
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001618
name: pons
namespace: zebrafish_anatomy
is_obsolete: true

[Term]
id: ZFA:0001619
name: optic fiber layer
namespace: zebrafish_anatomy
def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-000126-5]
synonym: "nerve fiber layer" EXACT []
synonym: "optic fiber layers" EXACT PLURAL []
xref: TAO:0002212
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000046 ! retinal neural layer
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001620
name: pronephric proximal convoluted tubule
namespace: zebrafish_anatomy
def: "Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007)." [ZFIN:ZDB-PUB-071029-9]
synonym: "PCT" EXACT []
xref: TAO:0002238
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000150 ! pronephric duct
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001621
name: pronephric proximal straight tubule
namespace: zebrafish_anatomy
def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule." [ZFIN:ZDB-PUB-071029-9]
synonym: "proximal straight tubules" EXACT PLURAL []
xref: TAO:0002239
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000150 ! pronephric duct
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001622
name: pronephric distal early tubule
namespace: zebrafish_anatomy
def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule." [ZFIN:ZDB-PUB-071029-9]
synonym: "pronephric distal early tubules" EXACT PLURAL []
xref: TAO:0002236
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000150 ! pronephric duct
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001623
name: posterior pronephric duct
namespace: zebrafish_anatomy
def: "Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening." [ZFIN:ZDB-PUB-071029-9]
synonym: "posterior pronephric ducts" EXACT PLURAL []
xref: TAO:0002225
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000150 ! pronephric duct
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001624
name: pronephric distal late tubule
namespace: zebrafish_anatomy
def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule." [ZFIN:ZDB-PUB-071029-9]
synonym: "distal late tubules" EXACT PLURAL []
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000150 ! pronephric duct
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001625
name: optic nerve head
namespace: zebrafish_anatomy
def: "Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "optic nerve heads" EXACT PLURAL []
xref: TAO:0002213
is_a: ZFA:0007009 ! nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000435 ! cranial nerve II
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001626
name: cerebral spinal fluid
namespace: zebrafish_anatomy
def: "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "CSF" EXACT []
xref: TAO:0002184
is_a: ZFA:0001487 ! portion of organism substance
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001627
name: lagenar capsule
namespace: zebrafish_anatomy
def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880]
synonym: "lagenar capsules" EXACT PLURAL []
xref: TAO:0001620
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001628
name: replacement bone
namespace: zebrafish_anatomy
def: "Bone that forms as a replacement of another structural tissue." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "replacement bones" EXACT PLURAL []
xref: TAO:0001637
is_a: ZFA:0001514 ! bone element
is_a: ZFA:0005624 ! replacement element
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001629
name: perichordal bone
namespace: zebrafish_anatomy
def: "Replacement bone that forms within the connective tissue surrounding the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "perichordal bones" EXACT PLURAL []
xref: TAO:0001639
is_a: ZFA:0001628 ! replacement bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001630
name: perichondral bone
namespace: zebrafish_anatomy
def: "Replacement bone that forms within the connective tissue surrounding cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "perichondral bones" EXACT PLURAL []
xref: TAO:0001638
is_a: ZFA:0001693 ! chondral bone
relationship: develops_from ZFA:0001634 ! perichondrium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001631
name: notochordal ossification
namespace: zebrafish_anatomy
def: "Perichordal bone that surrounds the anterior tip of the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001640
is_a: ZFA:0001629 ! perichordal bone
relationship: develops_from ZFA:0001633 ! perichordal connective tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001632
name: portion of connective tissue
namespace: zebrafish_anatomy
def: "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001641
xref: VSAO:0000017
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001633
name: perichordal connective tissue
namespace: zebrafish_anatomy
def: "Portion of connective tissue which surrounds the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001642
is_a: ZFA:0001632 ! portion of connective tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001634
name: perichondrium
namespace: zebrafish_anatomy
def: "Portion of connective tissue which surrounds cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cartilage connective tissue" EXACT []
xref: TAO:0001643
is_a: ZFA:0001632 ! portion of connective tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001635
name: intramembranous bone
namespace: zebrafish_anatomy
def: "Bone that forms directly within mesenchyme, and does not replace other tissues." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "intramembranous bones" EXACT PLURAL []
xref: TAO:0001644
is_a: ZFA:0001514 ! bone element
relationship: develops_from ZFA:0000393 ! mesenchyme
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001636
name: membrane bone
namespace: zebrafish_anatomy
def: "Intramembranous bone that forms deep in the organism." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "membrane bones" EXACT PLURAL []
xref: TAO:0001645
is_a: ZFA:0001635 ! intramembranous bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001637
name: bony projection
namespace: zebrafish_anatomy
def: "Portion of connective tissue that is an extension of a bone." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "bony projections" EXACT PLURAL []
synonym: "process" EXACT [TAO:0001834]
xref: TAO:0001646
xref: TAO:0001834
is_a: ZFA:0005619 ! skeletal tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001514 ! bone element
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001638
name: statoacoustic (VIII) nucleus
namespace: zebrafish_anatomy
synonym: "cochlear nucleus" EXACT []
synonym: "octaval nucleus" EXACT []
synonym: "vestibulocochlear nucleus" EXACT []
xref: TAO:0002243
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001639
name: vascular endothelium
namespace: zebrafish_anatomy
def: "Simple squamous epithelium which lines blood and lymphatic vessels and the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "endothelia" EXACT PLURAL []
xref: TAO:0002171
is_a: ZFA:0001498 ! simple squamous epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005249 ! vasculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001640
name: cephalic flexure
namespace: zebrafish_anatomy
def: "Ventral bend in the brain occurring caudal to the adenohypophyseal placode." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "ventral flexure" EXACT []
xref: TAO:0002181
is_a: ZFA:0005593 ! neuraxis flexure
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001641
name: rudimentary neural arch
namespace: zebrafish_anatomy
def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001666
is_a: ZFA:0001066 ! neural arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000158 ! urostyle
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001642
name: tooth row
namespace: zebrafish_anatomy
def: "Anatomical cluster consisting of adjacent teeth constituting a row." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "tooth rows" EXACT PLURAL []
xref: TAO:0001667
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001643
name: anatomical space
namespace: zebrafish_anatomy
def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [GOC:mh, ORCiD:0000-0001-9114-8737]
comment: Part_of parents of these terms should be changed to be located_in rather then part_of when we get the appropriate relation.
synonym: "anatomical spaces" EXACT PLURAL []
xref: CARO:0000005
xref: TAO:0001668
is_a: ZFA:0100000 ! zebrafish anatomical entity
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell

[Term]
id: ZFA:0001644
name: articular cartilage
namespace: zebrafish_anatomy
def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "articular cartilages" EXACT PLURAL []
xref: TAO:0001670
is_a: ZFA:0001460 ! pharyngeal arch cartilage
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001645
name: angular bone
namespace: zebrafish_anatomy
def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:curator]
synonym: "angular bones" EXACT PLURAL []
xref: TAO:0001669
is_a: ZFA:0001590 ! dermal bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001646
name: anal fin radial
namespace: zebrafish_anatomy
def: "Internal skeletal supports of the anal fin." [TAO:curator]
synonym: "anal fin pterygiophores" RELATED []
synonym: "anal fin radials" EXACT PLURAL []
xref: TAO:0001671
is_a: ZFA:0000271 ! radial
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001647
name: dorsal fin radial
namespace: zebrafish_anatomy
def: "Internal skeletal supports of the dorsal fin." [TAO:curator]
synonym: "dorsal fin pterygiophore " RELATED []
synonym: "dorsal fin radials" EXACT PLURAL []
xref: TAO:0001672
is_a: ZFA:0000271 ! radial
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001648
name: cardiac neural crest
namespace: zebrafish_anatomy
def: "Neural crest that migrates into the pharyngeal arches and heart, forming connective tissue that separates the vessels of the heart." [GOC:ymb, ORCiD:0000-0002-9900-7880]
xref: TAO:0002173
is_a: ZFA:0000045 ! neural crest
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001649
name: infraorbital series
namespace: zebrafish_anatomy
def: "Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "circumorbital series" EXACT []
xref: TAO:0001709
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000040 ! larval:days 14-20

[Term]
id: ZFA:0001650
name: branchial mesenchyme
namespace: zebrafish_anatomy
synonym: "gill mesenchyme" EXACT []
xref: TAO:0002172
is_a: ZFA:0000113 ! head mesenchyme
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001651
name: sternohyoid
namespace: zebrafish_anatomy
alt_id: ZFA:0000283
def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape.  The muscle is innervated by the occipitospinals and mainly composed of fast twitch muscle fibers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33, ZFIN:ZDB-PUB-190427-4, ZFIN:ZDB-PUB-970819-13]
synonym: "hypobranchial muscle" EXACT []
synonym: "sternohyoideus" EXACT []
synonym: "sternohyoids" EXACT []
xref: TAO:0000283
xref: TAO:0002200
is_a: ZFA:0000236 ! mandibular muscle
relationship: end ZFS:0000044 ! adult
relationship: has_developmental_contribution_from ZFA:0005923 ! anterior migratory muscle precursor stream
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0001652
name: head muscle
namespace: zebrafish_anatomy
def: "Muscle which is part of the head." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cephalic muscle" EXACT []
synonym: "cranial muscle " RELATED []
xref: TAO:0002198
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000328 ! cephalic musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001653
name: pericardial muscle
namespace: zebrafish_anatomy
def: "Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-001026-2]
xref: TAO:0002221
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000473 ! trunk musculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001654
name: opercular cavity
namespace: zebrafish_anatomy
def: "Anatomical space which is located beneath the operculum and external to the gills." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0002154
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001114 ! head
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001655
name: pericardial cavity
namespace: zebrafish_anatomy
def: "Anatomical space in which the heart is located and is surrounded by the pericardium." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "thoracic cavity" EXACT []
xref: TAO:0002220
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001438 ! coelom
relationship: part_of ZFA:0007115 ! pericardial region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001656
name: pleuroperitoneal cavity
namespace: zebrafish_anatomy
def: "Anatomical space which contains the abdominal viscera and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition." [GOC:cvs, ISBN:0030223695, ORCiD:0000-0002-2244-7917]
synonym: "coelom" RELATED []
synonym: "coelomic cavity" RELATED []
synonym: "visceral cavity" EXACT []
xref: TAO:0002224
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001438 ! coelom
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001657
name: supraoptic tract
namespace: zebrafish_anatomy
def: "CNS tract/commissure which extends between the telencephalon and diencephalon and lies along the dorsal edge of the optic stalk." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-719, ZFIN:ZDB-PUB-961014-955]
synonym: "SOT" EXACT []
xref: TAO:0002244
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000008 ! brain
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001658
name: hindbrain nucleus
namespace: zebrafish_anatomy
def: "Nucleus located within the hindbrain." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0002177
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001659
name: diencephalic nucleus
namespace: zebrafish_anatomy
def: "Brain nucleus part of the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0002191
is_a: ZFA:0001488 ! multi-tissue structure
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000101 ! diencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001660
name: telencephalic nucleus
namespace: zebrafish_anatomy
xref: TAO:0002178
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000079 ! telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001662
name: preglomerular nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0002226
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001663
name: cranial nerve root
namespace: zebrafish_anatomy
def: "The portion of tissue that is the initial segment of one of the cranial nerves leaving the central nervous system." [http://en.wikipedia.org/wiki/Nerve_root]
xref: TAO:0002190
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000641 ! cranial nerve
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001665
name: midbrain nucleus
namespace: zebrafish_anatomy
def: "Nucleus located in the midbrain." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0002209
is_a: ZFA:0005575 ! brain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001666
name: periventricular nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0002222
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000304 ! ventral telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001667
name: peripheral nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
xref: TAO:0002179
is_a: ZFA:0001660 ! telencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000304 ! ventral telencephalon
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001668
name: central nucleus of ventral telencephalon
namespace: zebrafish_anatomy
def: "Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737]
synonym: "area ventralis telencephali, nucleus centralis" EXACT []
xref: TAO:0002180
is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001669
name: intermediate nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2]
xref: TAO:0002202
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000633 ! caudal tuberculum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001670
name: notochord posterior region
namespace: zebrafish_anatomy
def: "Portion of tissue that is the part of the notochord located in the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001821
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000135 ! notochord
relationship: part_of ZFA:0000862 ! caudal fin skeleton
relationship: start ZFS:0000022 ! gastrula:bud

[Term]
id: ZFA:0001671
name: macula communis
namespace: zebrafish_anatomy
def: "Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383]
xref: TAO:0002206
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: part_of ZFA:0000217 ! inner ear
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001672
name: dorsolateral septum
namespace: zebrafish_anatomy
def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383]
synonym: "dorsal bar" RELATED []
xref: TAO:0002193
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000262 ! posterior semicircular canal
relationship: part_of ZFA:0000314 ! anterior semicircular canal
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0001673
name: pronephric podocyte
namespace: zebrafish_anatomy
def: "Podocyte that is part of the pronephros." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0002237
is_a: ZFA:0009285 ! podocyte
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001557 ! pronephric glomerulus
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001674
name: mesonephric podocyte
namespace: zebrafish_anatomy
def: "Podocyte that is part of the kidney (mesonephros)." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0002208
is_a: ZFA:0009285 ! podocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001288 ! renal glomerulus
relationship: start ZFS:0000039 ! larval:days 7-13

[Term]
id: ZFA:0001675
name: ligament
namespace: zebrafish_anatomy
def: "Portion of connective tissue that is a fibrous band connecting bones or cartilages or supporting an organ." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001682
is_a: ZFA:0001632 ! portion of connective tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001676
name: annular ligament
namespace: zebrafish_anatomy
def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070629-16]
xref: TAO:0002141
is_a: ZFA:0001675 ! ligament
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005566 ! anterior segment eye
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0001677
name: floor plate midbrain region
namespace: zebrafish_anatomy
def: "Floor plate that is part of the midbrain." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0002196
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000022 ! floor plate
relationship: start ZFS:0000025 ! segmentation:10-13 somites

[Term]
id: ZFA:0001678
name: immature eye
namespace: zebrafish_anatomy
def: "Multi-tissue structure that consists of the structures that develop into the retina and lens." [GOC:mh, ORCiD:0000-0001-9114-8737]
comment: Dbxref for ZFIN changed to match actual database accession number.  Old Dbxref ZDB-ANAT-090226-1 correct Dbxref ZDB-ANAT-090227-5.
xref: TAO:0002201
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0001679
name: solid lens vesicle
namespace: zebrafish_anatomy
def: "Portion of tissue that gives rise to the lens. The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24-26 hpf is accomplished in part by apoptosis, similar to mammals." [GOC:cvs, ORCiD:CVS, ZFIN:ZDB-PUB-050701-15]
comment: Dbxref for ZFIN changed to match actual database accession number.  Old Dbxref ZDB-ANAT-090226-2 correct Dbxref ZDB-ANAT-090227-6.
synonym: " immature lens" EXACT []
synonym: "lens mass" EXACT [ZFIN:ZDB-PUB-091023-49]
synonym: "lens vesicle" EXACT [ZFIN:ZDB-PUB-050701-15]
synonym: "presumptive lens" RELATED []
xref: TAO:0002205
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000122 ! lens placode
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0001678 ! immature eye
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0001680
name: parvocellular preoptic nucleus
namespace: zebrafish_anatomy
def: "Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209]
xref: TAO:0002219
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-03-23T01:16:53Z

[Term]
id: ZFA:0001681
name: grey matter
namespace: zebrafish_anatomy
def: "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "gray mater" RELATED []
synonym: "gray matter" EXACT []
xref: TAO:0002197
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-03-23T01:47:27Z

[Term]
id: ZFA:0001682
name: white matter
namespace: zebrafish_anatomy
alt_id: ZFA:0000145
def: "Multi-tissue structure comprised largely of myelinated axons." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "CNS tract/commissure" EXACT []
synonym: "CNS white matter" EXACT []
synonym: "white mater" RELATED []
xref: TAO:0000145
xref: TAO:0002142
xref: TAO:0002143
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000027 ! segmentation:20-25 somites
created_by: Melissa  Haendel
creation_date: 2009-03-23T01:50:38Z

[Term]
id: ZFA:0001683
name: corneal epithelium
namespace: zebrafish_anatomy
def: "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3]
xref: TAO:0002187
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000640 ! cornea
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Melissa  Haendel
creation_date: 2009-03-23T02:11:11Z

[Term]
id: ZFA:0001684
name: Bowman's layer
namespace: zebrafish_anatomy
def: "Acellular anatomical structure that is the zone of condensed collagen fibers underneath the basement membrane of the corneal epithelium that overlays the corneal stroma layer." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050701-15, ZFIN:ZDB-PUB-061010-3]
synonym: "anterior elastic lamina" EXACT []
synonym: "anterior limiting membrane" RELATED []
xref: TAO:0002155
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000640 ! cornea
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Melissa  Haendel
creation_date: 2009-03-23T02:11:47Z

[Term]
id: ZFA:0001685
name: corneal stroma
namespace: zebrafish_anatomy
def: "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3]
xref: TAO:0002189
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000640 ! cornea
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Melissa  Haendel
creation_date: 2009-03-23T02:12:16Z

[Term]
id: ZFA:0001686
name: Descemet's membrane
namespace: zebrafish_anatomy
def: "Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium.  Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050701-15, ZFIN:ZDB-PUB-061010-3]
synonym: "posterior limiting membrane" EXACT []
xref: TAO:0002157
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000640 ! cornea
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Melissa  Haendel
creation_date: 2009-03-23T02:12:32Z

[Term]
id: ZFA:0001687
name: corneal endothelium
namespace: zebrafish_anatomy
def: "Epithelium that is the innermost layer of the cornea and is comprised of a monolayer of polygonal cells." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3]
xref: TAO:0002186
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000640 ! cornea
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Melissa  Haendel
creation_date: 2009-03-23T02:13:25Z

[Term]
id: ZFA:0001688
name: corneal primordium
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3]
xref: TAO:0002188
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: part_of ZFA:0000107 ! eye
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Melissa  Haendel
creation_date: 2009-03-23T04:36:20Z

[Term]
id: ZFA:0001689
name: anatomical line
namespace: zebrafish_anatomy
def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH, ORCiD:0000-0001-9114-8737]
xref: CARO:0000008
xref: TAO:0001837
is_a: ZFA:0100000 ! zebrafish anatomical entity
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell
created_by: Melissa  Haendel
creation_date: 2009-04-30T02:46:34Z

[Term]
id: ZFA:0001690
name: groove
namespace: zebrafish_anatomy
def: "Anatomical structure that delineates a furrow or depression in an organ or tissue." [GOC:mh, ORCiD:0000-0001-9114-8737]
xref: TAO:0001838
is_a: ZFA:0000037 ! anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000001 ! zygote:1-cell
created_by: Melissa  Haendel
creation_date: 2009-04-30T02:48:53Z

[Term]
id: ZFA:0001691
name: cerebellar granule cell
namespace: zebrafish_anatomy
def: "Granule cell that is part of the cerebellum." [CL:curator]
subset: cell_slim
xref: CL:0001031
xref: TAO:0002182
is_a: ZFA:0009070 ! granule cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000358 ! granular layer corpus cerebelli
relationship: part_of ZFA:0000766 ! granular layer valvula cerebelli
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-04-30T03:18:48Z

[Term]
id: ZFA:0001692
name: hindbrain commissure
namespace: zebrafish_anatomy
def: "CNS white matter that crosses the midline within the hindbrain." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-090417-11]
xref: TAO:0002199
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000030 ! pharyngula:prim-15
created_by: Melissa  Haendel
creation_date: 2009-06-18T12:33:21Z

[Term]
id: ZFA:0001693
name: chondral bone
namespace: zebrafish_anatomy
def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [GOC:mh, ORCiD:0000-0001-9114-8737]
is_a: ZFA:0001628 ! replacement bone
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-07-29T11:34:33Z

[Term]
id: ZFA:0001694
name: olfactory granule cell
namespace: zebrafish_anatomy
def: "Granule cell that is part of the olfactory bulb." [CL:curator]
subset: cell_slim
xref: CL:0000626
xref: TAO:0002211
is_a: ZFA:0009070 ! granule cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000402 ! olfactory bulb
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-04-30T03:21:40Z

[Term]
id: ZFA:0001695
name: dorsolateral motor nucleus of vagal nerve
namespace: zebrafish_anatomy
def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090417-11]
synonym: "dlX" EXACT []
xref: TAO:0002192
is_a: ZFA:0000387 ! motor nucleus of vagal nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15
created_by: Melissa  Haendel
creation_date: 2009-08-04T10:42:49Z

[Term]
id: ZFA:0001696
name: medial motor nucleus of vagal nerve
namespace: zebrafish_anatomy
def: "Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090417-11]
synonym: "mmX" EXACT []
xref: TAO:0002207
is_a: ZFA:0000387 ! motor nucleus of vagal nerve
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec
created_by: Melissa  Haendel
creation_date: 2009-08-04T10:45:00Z

[Term]
id: ZFA:0001697
name: octaval nerve motor nucleus
namespace: zebrafish_anatomy
def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-061229-17]
synonym: "cranial nerve VIII motor nucleus" EXACT []
synonym: "octaval nerve motor nuclei" EXACT PLURAL []
synonym: "OLe" EXACT []
xref: TAO:0002174
is_a: ZFA:0001658 ! hindbrain nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-04T01:04:59Z

[Term]
id: ZFA:0001698
name: rostral octaval nerve motor nucleus
namespace: zebrafish_anatomy
def: "Octaval nerve motor nucleus that is initially located within rhombomere 6." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061229-17]
synonym: "REN" EXACT [ZFIN:ZDB-PUB-061229-17]
synonym: "ROLE" EXACT []
synonym: "rostral cranial nerve VIII motor nucleus" EXACT []
synonym: "rostral efferent nuclei" RELATED PLURAL [ZFIN:ZDB-PUB-061229-17]
xref: TAO:0002175
is_a: ZFA:0001697 ! octaval nerve motor nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-04T01:21:34Z

[Term]
id: ZFA:0001699
name: caudal octaval nerve motor nucleus
namespace: zebrafish_anatomy
def: "Octaval nerve motor nucleus that is initially located within rhombomere 7." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061229-17]
synonym: "caudal efferent nuclei" RELATED PLURAL [ZFIN:ZDB-PUB-061229-17]
synonym: "CEN" EXACT [ZFIN:ZDB-PUB-061229-17]
synonym: "RELL" EXACT []
synonym: "rostral cranial nerve VIII motor nucleus" EXACT []
xref: TAO:0002176
is_a: ZFA:0001697 ! octaval nerve motor nucleus
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-04T01:24:26Z

[Term]
id: ZFA:0001700
name: tunica externa swim bladder
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen)." [http://www.briancoad.com/Dictionary/T.htm]
xref: TAO:0002245
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000076 ! swim bladder
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-05T12:54:11Z

[Term]
id: ZFA:0001701
name: tunica interna swim bladder
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen." [http://www.briancoad.com/Dictionary/T.htm]
xref: TAO:0002246
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000076 ! swim bladder
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-05T12:55:22Z

[Term]
id: ZFA:0001702
name: apical ectodermal ridge
namespace: zebrafish_anatomy
def: "Proliferative region that is part of the developing fin fold or fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002146
is_a: ZFA:0000098 ! proliferative region
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000030 ! pharyngula:prim-15
created_by: Melissa  Haendel
creation_date: 2009-08-05T02:38:05Z

[Term]
id: ZFA:0001703
name: epidermal placode
namespace: zebrafish_anatomy
def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12]
xref: TAO:0002195
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001180 ! epidermal basal stratum
relationship: start ZFS:0000041 ! larval:days 21-29
created_by: Melissa  Haendel
creation_date: 2009-08-05T03:22:18Z

[Term]
id: ZFA:0001704
name: scale primordium
namespace: zebrafish_anatomy
def: "A portion of tissue that gives rise to the scale.  At the  initial stages the primordium  is composed of an accumulation of fibroblast below the basil epidermis.   As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081008-12]
synonym: "scale placode" RELATED []
synonym: "scale primordia " EXACT PLURAL []
xref: TAO:0002242
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: part_of ZFA:0001119 ! dermis
relationship: start ZFS:0000041 ! larval:days 21-29
created_by: Melissa  Haendel
creation_date: 2009-08-05T03:35:05Z

[Term]
id: ZFA:0001705
name: endolymphatic duct
namespace: zebrafish_anatomy
def: "Duct that is part of the inner ear and connects to the semicircular canals ending in the endolymphatic sac." [http://en.wikipedia.org/wiki/Endolymphatic_duct, ZFIN:ZDB-PUB-090112-20]
xref: TAO:0002194
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000217 ! inner ear
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-11T09:15:55Z

[Term]
id: ZFA:0001706
name: Purkinje cell layer corpus cerebelli
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells." [ZFIN:ZDB-PUB-090422-9]
xref: TAO:0002240
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000188 ! corpus cerebelli
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-11T09:41:06Z

[Term]
id: ZFA:0001707
name: brainstem
namespace: zebrafish_anatomy
def: "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain." [ISBN:3764351209]
xref: TAO:0002156
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000012 ! central nervous system
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-13T01:39:24Z

[Term]
id: ZFA:0001708
name: cerebellar white matter
namespace: zebrafish_anatomy
def: "CNS white matter that is part of the cerebellum." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "cerebellar tracts/commissures" EXACT PLURAL []
xref: TAO:0002183
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000100 ! cerebellum
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-13T01:48:48Z

[Term]
id: ZFA:0001709
name: Purkinje cell layer valvula cerebelli
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells." [ZFIN:ZDB-PUB-090422-9]
xref: TAO:0002241
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-13T03:00:08Z

[Term]
id: ZFA:0001710
name: mossy fiber
namespace: zebrafish_anatomy
def: "Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9]
synonym: "mossy fibers" EXACT PLURAL []
xref: TAO:0002210
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000188 ! corpus cerebelli
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-13T03:02:35Z

[Term]
id: ZFA:0001711
name: climbing fiber
namespace: zebrafish_anatomy
def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9]
synonym: "climbing fibers" EXACT PLURAL []
xref: TAO:0002185
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000188 ! corpus cerebelli
relationship: part_of ZFA:0000603 ! valvula cerebelli
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-13T03:18:48Z

[Term]
id: ZFA:0001712
name: presumptive bulbus arteriosus
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the heart tube and will become the bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002230
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000818 ! vagal neural crest
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000360 ! heart tube
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Melissa  Haendel
creation_date: 2009-08-31T11:25:06Z

[Term]
id: ZFA:0001713
name: parallel fiber
namespace: zebrafish_anatomy
def: "Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9]
synonym: "parallel fibers" EXACT PLURAL []
xref: TAO:0002218
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000394 ! molecular layer corpus cerebelli
relationship: part_of ZFA:0000913 ! molecular layer valvula cerebelli
relationship: start ZFS:0000000 ! unknown
created_by: Melissa  Haendel
creation_date: 2009-08-13T04:32:51Z

[Term]
id: ZFA:0001714
name: presumptive ventral mesoderm
namespace: zebrafish_anatomy
def: "Portion of presumptive mesoderm fated to become ventral mesoderm. Determined by fate mapping." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0002235
is_a: ZFA:0001377 ! presumptive mesoderm
relationship: end ZFS:0000019 ! gastrula:shield
relationship: start ZFS:0000014 ! blastula:sphere
created_by: Melissa  Haendel
creation_date: 2009-08-24T11:02:45Z

[Term]
id: ZFA:0001715
name: otic vesicle protrusion
namespace: zebrafish_anatomy
def: "Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11]
xref: TAO:0002215
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0000051 ! otic vesicle
relationship: start ZFS:0000032 ! pharyngula:high-pec
created_by: Melissa  Haendel
creation_date: 2009-08-25T10:45:23Z

[Term]
id: ZFA:0001716
name: otic vesicle ventral protrusion
namespace: zebrafish_anatomy
def: "Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11]
xref: TAO:0002216
is_a: ZFA:0001715 ! otic vesicle protrusion
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Melissa  Haendel
creation_date: 2009-08-25T10:53:24Z

[Term]
id: ZFA:0001717
name: pillar of the semicircular canal
namespace: zebrafish_anatomy
def: "Portion of tissue around which the semicircular canals flow." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383]
xref: TAO:0002223
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000431 ! semicircular canal
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Melissa  Haendel
creation_date: 2009-08-25T10:57:52Z

[Term]
id: ZFA:0001718
name: presumptive atrium heart tube
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFIN:ZDB-PUB-080218-11]
xref: TAO:0002228
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001721 ! presumptive atrium primitive heart tube
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000360 ! heart tube
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Melissa  Haendel
creation_date: 2009-08-25T12:20:59Z

[Term]
id: ZFA:0001719
name: presumptive cardiac ventricle heart tube
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle." [ZFIN:ZDB-PUB-080218-11]
xref: TAO:0002231
xref: ZFA:0002231
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001720 ! presumptive cardiac ventricle primitive heart tube
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000360 ! heart tube
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Melissa  Haendel
creation_date: 2009-08-25T12:21:18Z

[Term]
id: ZFA:0001720
name: presumptive cardiac ventricle primitive heart tube
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle." [ZFIN:ZDB-PUB-080218-11]
xref: TAO:0002232
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000149 ! primitive heart tube
relationship: start ZFS:0000028 ! segmentation:26+ somites
created_by: Melissa  Haendel
creation_date: 2009-08-25T01:10:23Z

[Term]
id: ZFA:0001721
name: presumptive atrium primitive heart tube
namespace: zebrafish_anatomy
def: "Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium." [ZFIN:ZDB-PUB-080218-11]
xref: TAO:0002229
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000149 ! primitive heart tube
relationship: start ZFS:0000028 ! segmentation:26+ somites
created_by: Melissa  Haendel
creation_date: 2009-08-25T01:10:28Z

[Term]
id: ZFA:0001722
name: presumptive sinus venosus
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the heart tube and will become the sinus venosus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002234
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000360 ! heart tube
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Melissa  Haendel
creation_date: 2009-08-31T11:40:57Z

[Term]
id: ZFA:0001723
name: presumptive atrioventricular canal
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the heart tube and will become the atrioventricular canal." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002227
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000360 ! heart tube
relationship: start ZFS:0000031 ! pharyngula:prim-25
created_by: Melissa  Haendel
creation_date: 2009-08-31T11:57:36Z

[Term]
id: ZFA:0001724
name: presumptive endocardium
namespace: zebrafish_anatomy
def: "Portion of tissue that is part of the heart tube and will become the endocardium." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002233
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000031 ! pharyngula:prim-25
relationship: part_of ZFA:0000360 ! heart tube
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Melissa  Haendel
creation_date: 2009-08-31T01:21:44Z

[Term]
id: ZFA:0001725
name: immature Schwann cell
namespace: zebrafish_anatomy
def: "A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons." [CL:curator, ISBN:0721662544]
comment: Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL.
subset: cell_slim
xref: CL:0002377
xref: TAO:0002203
is_a: ZFA:0009147 ! glial cell (sensu Vertebrata)
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: part_of ZFA:0000142 ! peripheral nervous system
relationship: start ZFS:0000025 ! segmentation:10-13 somites
created_by: Melissa  Haendel
creation_date: 2009-09-08T02:10:35Z

[Term]
id: ZFA:0005000
name: basal communicating artery
namespace: zebrafish_anatomy
def: "Artery that extends horizontally across the brain midline which is fed by the caudal division of the internal carotid artery. Three pairs of central arteries extend from the basal communicating artery (BCA), the anterior, middle and  posterior mesencephalic central arteries. The BCA does not correspond to the anterior communicating artery of the mammalian circle of Willis.  The BCA is unpaired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "BCA" EXACT []
xref: TAO:0005000
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0005001
name: posterior communicating artery
namespace: zebrafish_anatomy
def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "caudal communicating segment" EXACT []
synonym: "PCA" EXACT []
synonym: "PCS" EXACT []
synonym: "posterior communicating segment of the basilar artery" EXACT []
xref: TAO:0005001
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0005002
name: basilar artery
namespace: zebrafish_anatomy
def: "Artery that runs along the ventral keel of the hindbrain.  It lies between the primordial hindbrain channels(PHBC).  It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110426-11]
synonym: "BA" EXACT []
xref: TAO:0005002
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005003
name: pharyngeal vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the pharyngeal region." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "branchial basket" RELATED []
synonym: "branchial vasculature" EXACT []
xref: TAO:0005003
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001267 ! cranial vasculature
relationship: part_of ZFA:0001306 ! pharyngeal arch
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005004
name: aortic arch
namespace: zebrafish_anatomy
def: "Artery that is part of the pharyngeal arches." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "aortic arches" EXACT PLURAL []
synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6]
xref: TAO:0005004
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005003 ! pharyngeal vasculature
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005005
name: aortic arch 1
namespace: zebrafish_anatomy
def: "Aortic arch that is part of pharyngeal arch 1. The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "AA1" EXACT []
synonym: "mandibular aortic arch" EXACT []
xref: TAO:0005005
is_a: ZFA:0005004 ! aortic arch
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001612 ! pharyngeal arch 1
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005006
name: aortic arch 2
namespace: zebrafish_anatomy
def: "Aortic arch that is part of pharyngeal arch 2. Aortic arch 2 is paired and is a vestigial structure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "AA2" EXACT []
synonym: "hyoid aortic arch" EXACT []
xref: TAO:0005006
is_a: ZFA:0005004 ! aortic arch
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0001611 ! pharyngeal arch 2
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005007
name: aortic arch 3
namespace: zebrafish_anatomy
def: "Aortic arch that is part of pharyngeal arch 3. The paired aortic arch 3 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "AA3" EXACT []
xref: TAO:0005007
is_a: ZFA:0005004 ! aortic arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001606 ! pharyngeal arch 3
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005008
name: aortic arch 4
namespace: zebrafish_anatomy
def: "Aortic arch that is part of pharyngeal arch 4. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "AA4" EXACT []
xref: TAO:0005008
is_a: ZFA:0005004 ! aortic arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001607 ! pharyngeal arch 4
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005009
name: aortic arch 5
namespace: zebrafish_anatomy
def: "Aortic arch that is part of pharyngeal arch 5. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "AA5" EXACT []
xref: TAO:0005009
is_a: ZFA:0005004 ! aortic arch
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001608 ! pharyngeal arch 5
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005010
name: mid cerebral vein
namespace: zebrafish_anatomy
def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC)." [GOC:cvs, http://zfin.org/zf_info/zfbook/stages/hatch.html, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "MCeV" EXACT []
synonym: "MeCV" EXACT []
synonym: "mid-cerebral vein" EXACT []
synonym: "middle cerebral vein" EXACT []
xref: TAO:0005010
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005011
name: pseudobranchial artery
namespace: zebrafish_anatomy
def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "pseudobranchial arteries" EXACT PLURAL []
xref: TAO:0005011
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0005005 ! aortic arch 1
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005012
name: afferent filamental artery
namespace: zebrafish_anatomy
def: "Artery that enters the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "AFA" EXACT []
synonym: "afferent filamental arteries" EXACT PLURAL []
xref: TAO:0005012
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000666 ! filamental artery
relationship: part_of ZFA:0000716 ! afferent branchial artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005013
name: concurrent branch afferent branchial artery
namespace: zebrafish_anatomy
def: "The branch of the afferent branchial artery that continues posterodorsally." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "CCB" EXACT []
xref: TAO:0005013
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000716 ! afferent branchial artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005014
name: recurrent branch afferent branchial artery
namespace: zebrafish_anatomy
def: "The anteroventral proceeding branch of the afferent branchial artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "RCB" EXACT []
synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL []
xref: TAO:0005014
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000716 ! afferent branchial artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005015
name: afferent lamellar arteriole
namespace: zebrafish_anatomy
def: "Arterioles which take blood from the afferent filamental arteries to the gill lamella." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "afferent lamellar arterioles" EXACT PLURAL []
synonym: "AFL" EXACT []
xref: TAO:0005015
is_a: ZFA:0005255 ! arteriole
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000211 ! gill lamella
relationship: part_of ZFA:0005012 ! afferent filamental artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005016
name: aortic arch 6
namespace: zebrafish_anatomy
def: "Aortic arch that is part of pharyngeal arch 6. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "AA6" EXACT []
xref: TAO:0005016
is_a: ZFA:0005004 ! aortic arch
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001609 ! pharyngeal arch 6
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005017
name: primordial midbrain channel
namespace: zebrafish_anatomy
def: "The vessel between the anterior cerebral vein and the mid cerebral vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "PMBC" EXACT []
xref: TAO:0005017
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005018
name: efferent filamental artery
namespace: zebrafish_anatomy
def: "Artery that exits the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "EFA" EXACT []
xref: TAO:0005018
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000202 ! efferent branchial artery
relationship: part_of ZFA:0000666 ! filamental artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005019
name: efferent lamellar arteriole
namespace: zebrafish_anatomy
def: "Arterioles which take blood from the gill lamella to the efferent  filamental arteries." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "efferent lamellar arterioles" EXACT PLURAL []
synonym: "ELA" EXACT []
xref: TAO:0005019
is_a: ZFA:0005255 ! arteriole
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000211 ! gill lamella
relationship: part_of ZFA:0005018 ! efferent filamental artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005020
name: central artery
namespace: zebrafish_anatomy
def: "Artery that irrigates the forebrain and midbrain." [ZFIN:ZDB-PUB-010205-5]
synonym: "CtA" EXACT []
xref: TAO:0005020
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000099 ! brain vasculature
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005021
name: cerebellar central artery
namespace: zebrafish_anatomy
def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC." [ZFIN:ZDB-PUB-010205-5]
synonym: "CCtA" EXACT []
xref: TAO:0005021
is_a: ZFA:0005020 ! central artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005022
name: opercular artery
namespace: zebrafish_anatomy
def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "external carotid artery" RELATED []
synonym: "ORA" EXACT []
xref: TAO:0005022
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0005005 ! aortic arch 1
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005023
name: hematopoietic system
namespace: zebrafish_anatomy
def: "System responsible for generating hematopoietic cells." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005023
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0005024
name: trunk vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around trunk." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005024
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001115 ! trunk
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0005025
name: dorsal longitudinal anastomotic vessel
namespace: zebrafish_anatomy
def: "Paired trunk vessels that run medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf.  The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata.  In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
comment: Eventually half of the ISVs will carry blood from the aorta to the DLAVs, and half from the DLAV to the posterior cardinal vein.
synonym: "DLAV" EXACT []
xref: TAO:0005025
is_a: ZFA:0005314 ! blood vessel
relationship: develops_from ZFA:0001285 ! intersegmental vessel
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001073 ! axial vasculature
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: part_of ZFA:0005037 ! post-vent vasculature
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0005026
name: primary head sinus
namespace: zebrafish_anatomy
def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "lateral head vein" EXACT []
synonym: "PHS" EXACT []
xref: TAO:0005026
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005027
name: posterior cerebral vein
namespace: zebrafish_anatomy
def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata." [ZFIN:ZDB-PUB-010205-5]
synonym: "caudal cerebral vein" EXACT []
synonym: "PCeV" EXACT []
xref: TAO:0005027
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000099 ! brain vasculature
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005028
name: ventral wall of dorsal aorta
namespace: zebrafish_anatomy
def: "Region where blood progenitor markers are expressed.   Probable site of definitive hematopoiesis between 36hpf and 4dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "AGM" RELATED []
synonym: "aorta gonad mesonephros region" EXACT []
synonym: "DA roof" RELATED []
synonym: "DA-PCV joint " EXACT []
synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFIN:ZDB-PUB-061227-29]
synonym: "DP joint" EXACT []
xref: TAO:0005028
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000014 ! dorsal aorta
relationship: part_of ZFA:0005023 ! hematopoietic system
relationship: start ZFS:0000028 ! segmentation:26+ somites

[Term]
id: ZFA:0005029
name: rostral blood island
namespace: zebrafish_anatomy
def: "Hematopoietic tissue derived from the cephalic mesoderm.  Predominantly produces myeloid cells." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anterior myeloid compartment" RELATED []
synonym: "RBI" EXACT []
xref: TAO:0005029
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0005041 ! anterior lateral plate mesoderm
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005023 ! hematopoietic system
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0005030
name: dorsal ciliary vein
namespace: zebrafish_anatomy
def: "Vein that branches off the nasal ciliary artery.  Initially, at 2dpf, the dorsal ciliary vein (DCV) drains into the primordial midbrain channel (PMBC) or the PMBC/PHBC junction.  Later, by 3.5dpf,  the DCV drains into the optic choroid vascular plexus.  The dorsal branch of the inner optic circle drains into the DCV." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "DCV" EXACT []
xref: TAO:0005030
is_a: ZFA:0000082 ! vein
relationship: develops_from ZFA:0005082 ! dorsal branch nasal ciliary artery
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005031
name: dorsal longitudinal vein
namespace: zebrafish_anatomy
def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata." [ZFIN:ZDB-PUB-010205-5]
synonym: "DLV" EXACT []
xref: TAO:0005031
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000099 ! brain vasculature
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005032
name: optic vein
namespace: zebrafish_anatomy
def: "Vein that connects to the hyaloid vein that drains the eye.  External to eye." [ZFIN:ZDB-PUB-010205-5]
synonym: "OV" EXACT []
xref: TAO:0005032
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0005033
name: vertebral artery
namespace: zebrafish_anatomy
def: "Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome." [ZFIN:ZDB-PUB-010205-5]
synonym: "vertebral arteries" EXACT PLURAL []
xref: TAO:0005033
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0005034
name: parachordal vessel
namespace: zebrafish_anatomy
def: "Vessels run longitudinally along the horizontal myoseptum.  These vessels are not functional until after lumenization which occurs near 4 dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4]
synonym: "PAV" EXACT []
xref: TAO:0005034
is_a: ZFA:0000082 ! vein
relationship: develops_from ZFA:0000477 ! posterior cardinal vein
relationship: develops_from ZFA:0001057 ! intersegmental vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: part_of ZFA:0005037 ! post-vent vasculature
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0005035
name: subintestinal vein
namespace: zebrafish_anatomy
def: "Vein that drains the vascular plexus of the midgut and hindgut.  At early stages the subintestinal vein (SIV) drains into the PCV and the CCV.  At later stages the SIV drains into the hepatic sinusoid.  The SIV are begin as paired veins.   After 4dpf the remains of the left SIV forms separate segments that empty into the right SIV and eventually merge with the right.  At 3dpf the rostral end of  left SIV begins to form the reticular hepatic sinusoids.  The portion of the left SIV caudal to the hepatic sinusoid forms the hepatic portal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "SIV" EXACT []
synonym: "vitelline vein" EXACT []
xref: TAO:0005035
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005036
name: supraintestinal artery
namespace: zebrafish_anatomy
def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta  just caudal to the pronephric glomus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "SIA" EXACT []
xref: TAO:0005036
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005037
name: post-vent vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the post-vent region. This is frequently referred to as tail vasculature in the zebrafish community." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "tail vasculature" RELATED []
xref: TAO:0005037
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001117 ! post-vent region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005038
name: supraintestinal vein
namespace: zebrafish_anatomy
synonym: "<new synonym>" RELATED []
synonym: "supraintestinal veins" EXACT PLURAL []
xref: TAO:0005038
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005039
name: anterior lateral mesoderm
namespace: zebrafish_anatomy
synonym: "ALM" EXACT []
xref: TAO:0005039
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001065 ! lateral mesoderm
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0005040
name: posterior lateral mesoderm
namespace: zebrafish_anatomy
synonym: "PLM" EXACT []
xref: TAO:0005040
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001065 ! lateral mesoderm
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0005041
name: anterior lateral plate mesoderm
namespace: zebrafish_anatomy
synonym: "ALPM" EXACT []
xref: TAO:0005041
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000029 ! pharyngula:prim-5
relationship: part_of ZFA:0000121 ! lateral plate mesoderm
relationship: start ZFS:0000023 ! segmentation:1-4 somites

[Term]
id: ZFA:0005042
name: posterior lateral plate mesoderm
namespace: zebrafish_anatomy
synonym: "PLPM" EXACT []
xref: TAO:0005042
is_a: ZFA:0000041 ! mesoderm
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000121 ! lateral plate mesoderm
relationship: start ZFS:0000024 ! segmentation:5-9 somites

[Term]
id: ZFA:0005043
name: nevus
namespace: zebrafish_anatomy
def: "An ectopic melanophore accumulation analogous to a nevi (mole) in humans." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "f-nevi" EXACT []
synonym: "naevus" EXACT []
xref: TAO:0005043
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001119 ! dermis
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005044
name: optic artery
namespace: zebrafish_anatomy
def: "The artery that carries blood to the eye.  It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "optic arteries" EXACT PLURAL []
xref: TAO:0005044
is_a: ZFA:0000005 ! artery
is_a: ZFA:0007057 ! ocular blood vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005045
name: hyaloid artery
namespace: zebrafish_anatomy
def: "Artery that is internal to the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "hyaloid arteries" EXACT PLURAL []
xref: TAO:0005045
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005046 ! hyaloid vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005046
name: hyaloid vessel
namespace: zebrafish_anatomy
def: "Vessels that are associated with the posterior region of the lens." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15]
synonym: "hyaloid vasculature" RELATED []
synonym: "hyaloid vessels" EXACT PLURAL []
xref: TAO:0005046
is_a: ZFA:0007057 ! ocular blood vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005047
name: hyaloid vein
namespace: zebrafish_anatomy
def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5]
synonym: "hyaloid veins" EXACT PLURAL []
xref: TAO:0005047
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005046 ! hyaloid vessel
relationship: start ZFS:0000029 ! pharyngula:prim-5

[Term]
id: ZFA:0005048
name: primitive prosencephalic artery
namespace: zebrafish_anatomy
def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head." [ZFIN:ZDB-PUB-010205-5]
synonym: "PPrA" EXACT []
xref: TAO:0005048
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0005049
name: prosencephalic artery
namespace: zebrafish_anatomy
def: "After the primitive prosencephalic artery forms it becomes disconnected from the  cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "PrA" EXACT []
xref: TAO:0005049
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0005048 ! primitive prosencephalic artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005050
name: palatocerebral artery
namespace: zebrafish_anatomy
def: "The PLA branches ventrally from the CrDI.  It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo." [ZFIN:ZDB-PUB-010205-5]
synonym: "PLA" EXACT []
xref: TAO:0005050
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005051
name: communicating vessel palatocerebral artery
namespace: zebrafish_anatomy
def: "Connect the palatocerebral artery with the prosencephalic artery." [ZFIN:ZDB-PUB-010205-5]
synonym: "CMV" EXACT []
synonym: "communicating vessels" EXACT []
xref: TAO:0005051
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005052
name: anterior mesencephalic central artery
namespace: zebrafish_anatomy
def: "Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein." [ZFIN:ZDB-PUB-010205-5]
synonym: "AMCtA" EXACT []
synonym: "rostral mesencephalic central artery" EXACT []
xref: TAO:0005052
is_a: ZFA:0005020 ! central artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005053
name: nasal ciliary artery
namespace: zebrafish_anatomy
def: "Artery that branches off the cranial division of the internal carotid artery.  It bifurcates near the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "NCA" EXACT []
xref: TAO:0005053
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0005054
name: inner optic circle
namespace: zebrafish_anatomy
def: "Vessel that circles the inner rim of the optic capsule.  The inner optic circle drains ventrally into the optic vein and dorsally into the dorsal ciliary vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "IOC" EXACT []
xref: TAO:0005054
is_a: ZFA:0000005 ! artery
is_a: ZFA:0007057 ! ocular blood vessel
relationship: develops_from ZFA:0005082 ! dorsal branch nasal ciliary artery
relationship: develops_from ZFA:0005083 ! ventral branch nasal ciliary artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005055
name: median palatocerebral vein
namespace: zebrafish_anatomy
def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon.  Forms a 'T' with the palatocerebral veins." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "MPLV" EXACT []
xref: TAO:0005055
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005056
name: palatocerebral vein
namespace: zebrafish_anatomy
def: "Vein that drains the median palatocerebral vein into the optic vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "PLV" EXACT []
xref: TAO:0005056
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005057
name: epicardium
namespace: zebrafish_anatomy
def: "External layer of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
comment: No evidence of epicardium layer in cardiac atrium in Hu et al 2001.
xref: TAO:0005057
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0005808 ! proepicardial cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005058
name: ventricular epicardium
namespace: zebrafish_anatomy
def: "The external layer of the ventricle bounding the ventricular myocardium.  It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30]
xref: TAO:0005058
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000009 ! cardiac ventricle
relationship: part_of ZFA:0005057 ! epicardium
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005059
name: trabecular layer
namespace: zebrafish_anatomy
def: "The layer of the myocardium composed of projections of contractile myocytes.   The trabecular layer is bounded internally by the endocardium.  Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences." [ZFIN:ZDB-PUB-010912-30]
comment: Cardiac conduction may occur in the trabecular layer via trabecular fibers, PMID: 12626327.
synonym: "trabecula" RELATED []
xref: TAO:0005059
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001319 ! myocardium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005060
name: trabecular layer of ventricle
namespace: zebrafish_anatomy
xref: TAO:0005060
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005059 ! trabecular layer
relationship: part_of ZFA:0005061 ! ventricular myocardium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005061
name: ventricular myocardium
namespace: zebrafish_anatomy
def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30]
xref: TAO:0005061
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000009 ! cardiac ventricle
relationship: part_of ZFA:0001319 ! myocardium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005062
name: compact layer of ventricle
namespace: zebrafish_anatomy
def: "The outer layer the ventricular myocardium, muscle  fibers are arranged in a compact form and involved the entire ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005062
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005061 ! ventricular myocardium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005063
name: cardiac conduction system
namespace: zebrafish_anatomy
def: "Anatomical system located in the heart that initiates and propagates heart contraction.  The cardiac pacemaker." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "cardiac pacemaker" EXACT []
synonym: "central conduction system" EXACT []
xref: TAO:0005063
is_a: ZFA:0001439 ! anatomical system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005064
name: atrioventricular valve
namespace: zebrafish_anatomy
def: "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30]
xref: TAO:0005064
is_a: ZFA:0005065 ! heart valve
relationship: develops_from ZFA:0001317 ! endocardial cushion
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000009 ! cardiac ventricle
relationship: part_of ZFA:0000471 ! atrium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005065
name: heart valve
namespace: zebrafish_anatomy
def: "Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "heart valves" EXACT PLURAL []
xref: TAO:0005065
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000114 ! heart
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005066
name: bulbus arteriosus outer layer
namespace: zebrafish_anatomy
def: "The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina." [ZFIN:ZDB-PUB-010912-30]
synonym: "bulbus arteriosus externa" EXACT []
xref: TAO:0005066
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000173 ! bulbus arteriosus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005067
name: bulbus arteriosus middle layer
namespace: zebrafish_anatomy
def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils." [ZFIN:ZDB-PUB-010912-30]
synonym: "bulbus arteriosus media" EXACT []
xref: TAO:0005067
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000173 ! bulbus arteriosus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005068
name: bulbus arteriosus inner layer
namespace: zebrafish_anatomy
def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer." [ZFIN:ZDB-PUB-010912-30]
synonym: "bulbus arteriosus intima" EXACT []
xref: TAO:0005068
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000173 ! bulbus arteriosus
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005069
name: sinoatrial node
namespace: zebrafish_anatomy
def: "Portion of tissue containing  3 and 30 cells  in dorsal right quadrant of atrium that initiate heart beat." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101115-23]
xref: TAO:0005069
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0005601 ! sinoatrial ring
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000471 ! atrium
relationship: part_of ZFA:0005063 ! cardiac conduction system
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005070
name: atrioventricular node
namespace: zebrafish_anatomy
def: "The portion of tissue in the atrioventricular canal that slows impulse propagation between the atrium and cardiac ventricle." [ZFIN:ZDB-PUB-060227-6]
synonym: "AV node" EXACT []
synonym: "downstream pacemaker" RELATED []
xref: TAO:0005070
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0005073 ! atrioventricular ring
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001315 ! atrioventricular canal
relationship: part_of ZFA:0005063 ! cardiac conduction system
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005071
name: distal conduction system
namespace: zebrafish_anatomy
comment: Appears to be mammalian due to exact synonym His-Perkinje system, which doesn't have an exact analog in fish (or frogs). PMID:22984480 PLoS One. 2012;7(9):e44231.
synonym: "His-Purkinje system" EXACT []
synonym: "His-Purkinji network" EXACT []
synonym: "HPS" EXACT []
xref: TAO:0005071
is_obsolete: true
consider: ZFA:0005059

[Term]
id: ZFA:0005072
name: endocardial ring
namespace: zebrafish_anatomy
def: "A portion of endocardial tissue that is part of the atrioventricular ring." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005072
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001320 ! endocardium
relationship: part_of ZFA:0005073 ! atrioventricular ring
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0005073
name: atrioventricular ring
namespace: zebrafish_anatomy
def: "A ring of conduction tissue that forms in the atrioventricular canal." [ZFIN:ZDB-PUB-060227-6]
synonym: "AV ring" EXACT []
xref: TAO:0005073
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000035 ! larval:protruding-mouth
relationship: part_of ZFA:0001315 ! atrioventricular canal
relationship: part_of ZFA:0005063 ! cardiac conduction system
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0005074
name: central cardiac conduction system
namespace: zebrafish_anatomy
def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060227-6]
xref: TAO:0005074
is_a: ZFA:0005063 ! cardiac conduction system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005075
name: peripheral cardiac conduction system
namespace: zebrafish_anatomy
def: "Portion of the cardiac conduction system, with rapid impulse propagation.  In the zebrafish fast conduction takes place in the trabecular layer." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120927-27, ZFIN:ZDB-PUB-120928-25]
synonym: "distal conduction system " RELATED []
synonym: "ventricular fast conduction system" EXACT [ZFIN:ZDB-PUB-120927-27]
xref: TAO:0005075
is_a: ZFA:0005063 ! cardiac conduction system
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000009 ! cardiac ventricle
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005076
name: primordial vasculature
namespace: zebrafish_anatomy
def: "Is a portion of tissue that will develop into vasculature." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005076
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000034 ! hatching:pec-fin
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0005077
name: vascular cord
namespace: zebrafish_anatomy
def: "The primordial vasculature that will develop into blood vessels  by the process of tubulogenesis.  The  vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord.  The cord then undergoes  tubulogenesis to form the lumen of the vessels." [ZFIN:ZDB-PUB-040416-1]
xref: TAO:0005077
is_a: ZFA:0005076 ! primordial vasculature
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000026 ! segmentation:14-19 somites

[Term]
id: ZFA:0005078
name: middle mesencephalic central artery
namespace: zebrafish_anatomy
def: "Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain." [ZFIN:ZDB-PUB-010205-5]
synonym: "MMCtA" EXACT []
xref: TAO:0005078
is_a: ZFA:0005020 ! central artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005079
name: posterior mesencephalic central artery
namespace: zebrafish_anatomy
def: "Project dorsally from BCA to irrigate the caudal part of midbrain." [ZFIN:ZDB-PUB-010205-5]
synonym: "caudal mesencephalic central artery" EXACT []
synonym: "PMCtA" EXACT []
xref: TAO:0005079
is_a: ZFA:0005020 ! central artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005080
name: anterior mesenteric artery
namespace: zebrafish_anatomy
def: "An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery." [ZFIN:ZDB-PUB-010205-5]
synonym: "AMA" EXACT []
synonym: "rostral mesenteric artery" EXACT []
xref: TAO:0005080
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005081
name: internal carotid artery
namespace: zebrafish_anatomy
def: "Artery that originates as rostral extensions of the dorsal aorta and travels through the hypophyseal fossa into the cranium.  The internal carotid artery splits near the hypothalamus and optic nerve to form  caudal and cranial divisions." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140605-9]
comment: Homologous to the human ICA ZDB-PUB-140605-9.
synonym: "cranial carotid artery" EXACT []
synonym: "ICA" EXACT []
xref: TAO:0005081
is_a: ZFA:0000005 ! artery
relationship: develops_from ZFA:0001053 ! primitive internal carotid artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000097 ! carotid artery
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005082
name: dorsal branch nasal ciliary artery
namespace: zebrafish_anatomy
def: "Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "dorsal branch nasal ciliary arteries" EXACT PLURAL []
xref: TAO:0005082
is_a: ZFA:0000005 ! artery
is_a: ZFA:0007057 ! ocular blood vessel
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005053 ! nasal ciliary artery
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005083
name: ventral branch nasal ciliary artery
namespace: zebrafish_anatomy
xref: TAO:0005083
is_a: ZFA:0000005 ! artery
is_a: ZFA:0007057 ! ocular blood vessel
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005053 ! nasal ciliary artery
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005084
name: metencephalic artery
namespace: zebrafish_anatomy
def: "These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "metencephalic arteries" EXACT PLURAL []
xref: TAO:0005084
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0005085
name: nasal artery
namespace: zebrafish_anatomy
def: "The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins." [ZFIN:ZDB-PUB-010205-5]
synonym: "NA" EXACT []
xref: TAO:0005085
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0005086
name: pectoral artery
namespace: zebrafish_anatomy
def: "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch <a href='http://zfin.org/zf_info/zfbook/stages/hatch.html'> Kimmel et al. 1993</a>." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "PA" EXACT []
synonym: "subclavian artery" EXACT []
xref: TAO:0005086
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005301 ! pectoral fin blood vessel
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005087
name: pectoral vein
namespace: zebrafish_anatomy
def: "Vein from the pectoral fin that drains into the ACV just cranial to the ACV-CCV junction." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "PV" EXACT []
xref: TAO:0005087
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005301 ! pectoral fin blood vessel
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005088
name: posterior mesenteric artery
namespace: zebrafish_anatomy
def: "Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery." [ZFIN:ZDB-PUB-010205-5]
synonym: "caudal mesenteric artery" EXACT []
synonym: "PMA" EXACT []
xref: TAO:0005088
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005089
name: swim bladder artery
namespace: zebrafish_anatomy
def: "An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta.  The SBA vascular loops are located on the ventral side of the swim bladder." [ZFIN:ZDB-PUB-010205-5]
synonym: "SBA" EXACT []
xref: TAO:0005089
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005090
name: hepatic portal vein
namespace: zebrafish_anatomy
def: "Vein that collects blood from the small intestine, pancreas and spleen and routes it through the liver." [GOC:cvs, http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/anatomy.html, ORCiD:0000-0002-2244-7917]
synonym: "HPV" EXACT []
synonym: "primary hepatic portal vein" RELATED []
xref: TAO:0005090
is_a: ZFA:0000082 ! vein
relationship: develops_from ZFA:0005035 ! subintestinal vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005091
name: hepatic sinusoid
namespace: zebrafish_anatomy
def: "Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers.  Sinusoids are scattered throughout the parenchyma and appear small and round." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090422-17]
synonym: "hepatic sinusoids" EXACT PLURAL []
xref: TAO:0005091
is_a: ZFA:0005314 ! blood vessel
relationship: develops_from ZFA:0005035 ! subintestinal vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: part_of ZFA:0005024 ! trunk vasculature
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005092
name: mesencephalic vein
namespace: zebrafish_anatomy
def: "Paired veins that sprout from the dorsal midline junction and dive ventrally.  The mesencephalic veins are fed by the mesencephalic arteries,  after 2.5 dpf, and drain into the dorsal longitudinal vessel after 5dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "MsV" EXACT []
xref: TAO:0005092
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005093
name: nasal vein
namespace: zebrafish_anatomy
def: "Vein that  is fed by the nasal artery.  It  rises dorsally around the front of the head, draining into the ACeV and eventually into the PMBC on either side." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "NV" EXACT []
xref: TAO:0005093
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005297 ! cranial blood vessel
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0005094
name: optic choroid vascular plexus
namespace: zebrafish_anatomy
alt_id: ZFA:0005228
def: "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5]
synonym: "choroid vasculature" EXACT []
synonym: "CVP" EXACT []
xref: TAO:0005094
is_a: ZFA:0005933 ! mature plexus
is_a: ZFA:0007057 ! ocular blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005229 ! optic choroid
relationship: start ZFS:0000036 ! larval:day 4

[Term]
id: ZFA:0005095
name: fin vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005095
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000108 ! fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005096
name: pectoral fin vasculature
namespace: zebrafish_anatomy
def: "Vasculature of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005096
is_a: ZFA:0005095 ! fin vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001161 ! pectoral fin
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005097
name: caudal fin vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005097
is_a: ZFA:0005095 ! fin vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001058 ! caudal fin
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005098
name: central ray artery
namespace: zebrafish_anatomy
def: "Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031119-3]
synonym: "central ray arteries" EXACT PLURAL []
xref: TAO:0005098
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005299 ! fin blood vessel
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005099
name: ray vein
namespace: zebrafish_anatomy
def: "Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031119-3]
synonym: "ray veins" EXACT PLURAL []
xref: TAO:0005099
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005299 ! fin blood vessel
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005100
name: intervessel commissure
namespace: zebrafish_anatomy
def: "Vessels that travel between artery and veins or vein and vein in a single ray." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "intervessel comisures" EXACT PLURAL []
xref: TAO:0005100
is_a: ZFA:0005299 ! fin blood vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005101
name: interray vessel
namespace: zebrafish_anatomy
def: "Vessels that travel between veins in adjacent rays." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "interray vessels" EXACT PLURAL []
xref: TAO:0005101
is_a: ZFA:0005299 ! fin blood vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005102
name: presumptive median fin fold
namespace: zebrafish_anatomy
def: "Stripe of tissue fated to become the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005102
is_a: ZFA:0001116 ! presumptive structure
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0005103
name: presumptive ventral fin fold
namespace: zebrafish_anatomy
def: "Stripe of tissue on the ventral side of the fish,  fated to become the ventral region of the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005103
is_a: ZFA:0005102 ! presumptive median fin fold
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0005104
name: presumptive dorsal fin fold
namespace: zebrafish_anatomy
def: "Stripe of tissue on the dorsal side of the fish, fated to become the dorsal region of the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005104
is_a: ZFA:0005102 ! presumptive median fin fold
relationship: end ZFS:0000028 ! segmentation:26+ somites
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0005105
name: lymph vasculature
namespace: zebrafish_anatomy
def: "A network of blunt ended vessels lacking direct connection to the blood vascular system.  These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal.  They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels.  The walls are mostly composed of single layer of irregularly shaped endothelial cells.  Lymphatic vessels are usually classified as either superficial or deep." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43, ZFIN:ZDB-PUB-130218-10]
synonym: "lymph vessel" RELATED []
synonym: "lymph vessels" EXACT PLURAL []
xref: TAO:0005105
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000385 ! lymphatic system
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
id: ZFA:0005106
name: longitudinal lateral lymphatic vessel
namespace: zebrafish_anatomy
synonym: "LLL" EXACT []
xref: TAO:0005106
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005107
name: pectoral lymphatic vessel
namespace: zebrafish_anatomy
synonym: "PL" EXACT []
xref: TAO:0005107
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005108
name: facial lymphatic vessel
namespace: zebrafish_anatomy
comment: Probably a deep lymph vessel.  This vessel was shown in ZDB-PUB-060616-13 at 5 weeks post fertilization  using Berlin blue dye lymphangiography.
synonym: "FL" EXACT []
xref: TAO:0005108
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005831 ! facial lymphatic network
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005109
name: jugular lymphatic vessel
namespace: zebrafish_anatomy
def: "Lymph vessel that connects the lateral facial lymph vessel to the thoracic duct near the common cardinal vein." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43]
synonym: "JL" EXACT []
synonym: "JLV" EXACT []
xref: TAO:0005109
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005831 ! facial lymphatic network
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005110
name: thoracic duct
namespace: zebrafish_anatomy
def: "The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein." [ZFIN:ZDB-PUB-100719-62]
xref: TAO:0005110
is_a: ZFA:0005296 ! axial lymph vessel
relationship: develops_from ZFA:0005605 ! lymphangioblast cord
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000035 ! larval:protruding-mouth

[Term]
id: ZFA:0005111
name: medial forebrain bundle
namespace: zebrafish_anatomy
def: "Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus.  In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-071219-12, ZFIN:ZDB-PUB-961014-1280]
synonym: "medial forebrain bundles" EXACT PLURAL []
xref: TAO:0005111
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0005112
name: dorsal lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva. The dorsal line runs along the dorsal side of the body and never extends beyond the dorsal fin. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070907-34]
synonym: "dorsal lateral lines" EXACT PLURAL []
xref: TAO:0005112
is_a: ZFA:0001469 ! lateral line
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001471 ! posterior lateral line system
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005113
name: dorsal lateral line neuromast
namespace: zebrafish_anatomy
def: "Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576]
synonym: "neuromast dorsal" EXACT []
xref: TAO:0005113
is_a: ZFA:0000243 ! neuromast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005112 ! dorsal lateral line
relationship: start ZFS:0000034 ! hatching:pec-fin

[Term]
id: ZFA:0005114
name: middle lateral line system
namespace: zebrafish_anatomy
def: "The middle lateral line system develops from cranial ectodermal placodes, that give rise to both the neuromasts and the middle lateral line sensory nerves that innervate the neuromasts. The middle lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body  that are innervated by several lateral line nerves, which project to the hindbrain. The middle  lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0005114
is_a: ZFA:0000034 ! lateral line system
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005115
name: primary posterior lateral line primordium
namespace: zebrafish_anatomy
def: "Primordium that forms the first neuromasts of the posterior lateral line.  This primordium travels at 1.5-1.7 somites/hour and deposits  neuromast that are polarized along the antero-posterior axis." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-040319-12, ZFIN:ZDB-PUB-040916-1]
synonym: "primary posterior lateral line primordia" EXACT PLURAL []
synonym: "primI" EXACT []
xref: TAO:0005115
is_a: ZFA:0001157 ! posterior lateral line primordium
relationship: develops_from ZFA:0001156 ! posterior lateral line placode
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: start ZFS:0000027 ! segmentation:20-25 somites

[Term]
id: ZFA:0005116
name: secondary posterior lateral line primordium
namespace: zebrafish_anatomy
def: "Second lateral line primordium.  These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-040319-12, ZFIN:ZDB-PUB-040916-1]
synonym: "secondary posterior lateral line primordia" EXACT PLURAL []
xref: TAO:0005116
is_a: ZFA:0001157 ! posterior lateral line primordium
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
id: ZFA:0005117
name: anterior lateral line primordium
namespace: zebrafish_anatomy
def: "A migrating group of cells originating from an anterior lateral line placode.  The primordium deposits neuromasts and interneuromasts between them during its migration." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "anterior lateral line primordia" EXACT PLURAL []
xref: TAO:0005117
is_a: ZFA:0000228 ! lateral line primordium
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001468 ! anterior lateral line system
relationship: start ZFS:0000030 ! pharyngula:prim-15

[Term]
id: ZFA:0005118
name: middle lateral line primordium
namespace: zebrafish_anatomy
def: "A migrating group of cells originating from the middle lateral line placode.  The primordium deposits neuromasts  with interneuromasts between them." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "middle lateral line primordia" EXACT PLURAL []
xref: TAO:0005118
is_a: ZFA:0000228 ! lateral line primordium
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0005114 ! middle lateral line system
relationship: start ZFS:0000031 ! pharyngula:prim-25

[Term]
id: ZFA:0005119
name: barbel primordium
namespace: zebrafish_anatomy
def: "A surface structure that will eventually grow to form a barbel.   The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "barbel primordia" EXACT PLURAL []
xref: TAO:0005119
is_a: ZFA:0000292 ! surface structure
relationship: end ZFS:0000043 ! juvenile:days 45-89
relationship: start ZFS:0000042 ! juvenile:days 30-44

[Term]
id: ZFA:0005120
name: peritoneum
namespace: zebrafish_anatomy
def: "The serous membrane that lines the peritoneal cavity. The peritoneum secretes serous fluid which allows free movement of the peritoneum and the intraperitoneal organs." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0005120
is_a: ZFA:0005425 ! serous membrane
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005121
name: middle lateral line placode
namespace: zebrafish_anatomy
def: "Dorsolateral placode that gives rise to the middle lateral line." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "middle lateral line placodes" EXACT PLURAL []
xref: TAO:0005121
is_a: ZFA:0001310 ! dorsolateral placode
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: part_of ZFA:0005114 ! middle lateral line system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005122
name: dorsal axial hypoblast
namespace: zebrafish_anatomy
def: "Dorsal region of the axial hypoblast." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
xref: TAO:0005122
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000022 ! gastrula:bud
relationship: part_of ZFA:0001378 ! axial hypoblast
relationship: start ZFS:0000020 ! gastrula:75%-epiboly

[Term]
id: ZFA:0005123
name: gut epithelium
namespace: zebrafish_anatomy
def: "Epithelium lining the lumen of the gut." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005123
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000112 ! gut
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005124
name: intestinal epithelium
namespace: zebrafish_anatomy
def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible." [ZFIN:ZDB-PUB-050209-3]
synonym: "intestine epithelium" EXACT []
synonym: "villous epithelium" EXACT [ZFIN:ZDB-PUB-090217-11]
xref: TAO:0005124
is_a: ZFA:0001496 ! simple columnar epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005123 ! gut epithelium
relationship: part_of ZFA:0005660 ! intestinal mucosa
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005125
name: intestinal villus
namespace: zebrafish_anatomy
def: "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine." [ZFIN:ZDB-PUB-050209-3]
synonym: "intestinal villi" EXACT PLURAL []
xref: TAO:0005125
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005124 ! intestinal epithelium
relationship: start ZFS:0000037 ! larval:day 5

[Term]
id: ZFA:0005126
name: intestinal bulb epithelium
namespace: zebrafish_anatomy
def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005126
is_a: ZFA:0005124 ! intestinal epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001076 ! intestinal bulb
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005127
name: mid intestine epithelium
namespace: zebrafish_anatomy
def: "Intestinal epithelium which lines the lumen of the mid intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005127
is_a: ZFA:0005124 ! intestinal epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001323 ! mid intestine
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005128
name: posterior intestine epithelium
namespace: zebrafish_anatomy
def: "Intestinal epithelium which lines the lumen of the posterior intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005128
is_a: ZFA:0005124 ! intestinal epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000706 ! posterior intestine
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005129
name: mesentery
namespace: zebrafish_anatomy
def: "A double layer composed of peritoneum that attaches the visceral organs to the body wall." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005129
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005120 ! peritoneum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005130
name: dorsal mesentery
namespace: zebrafish_anatomy
def: "The mesentery that originates from the dorsal side of the peritoneal cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005130
is_a: ZFA:0005129 ! mesentery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005131
name: parietal peritoneum
namespace: zebrafish_anatomy
def: "The peritoneum that lines the walls of the peritoneal cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005131
is_a: ZFA:0005425 ! serous membrane
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005120 ! peritoneum
relationship: part_of ZFA:0007116 ! pleuroperitoneal region
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005132
name: visceral peritoneum
namespace: zebrafish_anatomy
def: "The part of peritoneum that is a serous membrane covers the external surfaces of most abdominal organs." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "tunica serosa" RELATED [http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html]
xref: TAO:0005132
is_a: ZFA:0005425 ! serous membrane
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005120 ! peritoneum
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005133
name: ventral mesentery
namespace: zebrafish_anatomy
def: "The mesentery that originates from the ventral side of the peritoneal cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005133
is_a: ZFA:0005129 ! mesentery
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005134
name: dental epithelium
namespace: zebrafish_anatomy
def: "Epithelium that is part of a developing tooth or dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "dental epithelia" EXACT PLURAL []
xref: TAO:0005134
is_a: ZFA:0001486 ! epithelium
relationship: develops_from ZFA:0001174 ! pharyngeal epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005135
name: primary dental epithelium
namespace: zebrafish_anatomy
def: "Epithelium that surrounds a primary tooth.  This epithelium is committed to formation of replacement teeth." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pharyngeal tooth epithelium" EXACT []
synonym: "tooth epithelium" EXACT []
xref: TAO:0005135
is_a: ZFA:0005134 ! dental epithelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005136
name: inner dental epithelium
namespace: zebrafish_anatomy
def: "Inner layer of the dental organ, composed of ameloblasts." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "ide" EXACT []
synonym: "inner enamel epithelium" EXACT []
xref: TAO:0005136
is_a: ZFA:0005134 ! dental epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005138 ! dental organ
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005137
name: outer dental epithelium
namespace: zebrafish_anatomy
def: "Outer layer of the dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "ode" EXACT []
xref: TAO:0005137
is_a: ZFA:0005134 ! dental epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005138 ! dental organ
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005138
name: dental organ
namespace: zebrafish_anatomy
def: "A structure that is involved in tooth formation.  A bell shape two layer  epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme.  At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation.  This structure remains at the base of the erupted tooth and is the source of replacement teeth." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-001208-4]
synonym: "enamel organ" EXACT []
xref: TAO:0005138
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001153 ! tooth placode
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005139
name: dental mesenchyme
namespace: zebrafish_anatomy
def: "Mesenchyme enclosed by dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005139
is_a: ZFA:0000113 ! head mesenchyme
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005138 ! dental organ
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005140
name: dental papilla
namespace: zebrafish_anatomy
def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undifferentiated mesenchyme cells and connects to the basal lamina." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pharyngeal tooth mesenchyme" EXACT []
synonym: "tooth mesenchyme" EXACT []
xref: TAO:0005140
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0005139 ! dental mesenchyme
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005141
name: tooth pulp
namespace: zebrafish_anatomy
def: "Material in the center of the dentine of the mature tooth.  In secondary teeth the pulp contains blood vessels and odontoblast." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005141
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005140 ! dental papilla
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005142
name: enameloid
namespace: zebrafish_anatomy
def: "A dentine-like hypermineralized substance that covers the zebrafish tooth tip." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "enamel" RELATED []
xref: TAO:0005142
is_a: ZFA:0005623 ! odontoid tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005143
name: dentine
namespace: zebrafish_anatomy
def: "Mineralized collagen containing substance that forms the tooth structure.  The dentine of first-generation teeth of zebrafish is entirely atubular." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-001208-4]
synonym: "dentin " EXACT []
xref: TAO:0005143
is_a: ZFA:0005623 ! odontoid tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005144
name: ampullary nerve
namespace: zebrafish_anatomy
def: "Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "ampullary nerves" EXACT PLURAL []
xref: TAO:0005144
is_a: ZFA:0007009 ! nerve
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000247 ! cranial nerve VIII
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005145
name: muscle
namespace: zebrafish_anatomy
def: "Portion of tissue composed of contractile fibers." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "muscles" EXACT PLURAL []
xref: TAO:0005145
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000548 ! musculature system
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005146
name: area postrema
namespace: zebrafish_anatomy
def: "An area of medulla oblongata, outside the blood-brain barrier.  The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation." [ZFIN:ZDB-PUB-970602-2]
xref: TAO:0005146
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000545 ! medulla oblongata
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005147
name: regenerating tissue
namespace: zebrafish_anatomy
def: "A portion of tissue that is regrowing after damage or amputation." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "regenerating tissues" EXACT PLURAL []
xref: TAO:0005147
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005148
name: apical epidermal cap
namespace: zebrafish_anatomy
def: "Part of the regeneration epithelium closest to the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "apical epidermal caps" EXACT PLURAL []
xref: TAO:0005148
is_a: ZFA:0005147 ! regenerating tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001389 ! regeneration epithelium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005149
name: distal epidermal cap
namespace: zebrafish_anatomy
def: "Part of regeneration epithelium at the tip of the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "distal epidermal caps" EXACT PLURAL []
xref: TAO:0005149
is_a: ZFA:0005147 ! regenerating tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001389 ! regeneration epithelium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005150
name: basal regeneration epithelium
namespace: zebrafish_anatomy
def: "Layer of the wound epidermis that surrounds the blastema." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "basal wound epidermis" EXACT []
xref: TAO:0005150
is_a: ZFA:0005147 ! regenerating tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001389 ! regeneration epithelium
relationship: start ZFS:0000000 ! unknown

[Term]
id: ZFA:0005151
name: gold iridophore
namespace: zebrafish_anatomy
def: "Iridescent iridophore containing gold reflecting platelets." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0005151
is_a: ZFA:0009199 ! iridophore
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000032 ! pharyngula:high-pec
created_by: Ceri
creation_date: 2009-03-12T12:34:16Z

[Term]
id: ZFA:0005152
name: silver iridophore
namespace: zebrafish_anatomy
def: "Iridescent iridophore containing silver reflecting platelets." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0005152
is_a: ZFA:0009199 ! iridophore
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000032 ! pharyngula:high-pec
created_by: Ceri
creation_date: 2009-03-12T12:48:18Z

[Term]
id: ZFA:0005153
name: synovial joint
namespace: zebrafish_anatomy
def: "Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "diarthrodial joints" RELATED []
synonym: "diarthroses" EXACT []
xref: TAO:0005153
is_a: ZFA:0001596 ! joint
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-03-12T01:31:49Z

[Term]
id: ZFA:0005154
name: synovial fluid
namespace: zebrafish_anatomy
def: "Portion of organism substance that is a clear fluid that occupies the space in synovial joints." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005154
is_a: ZFA:0001487 ! portion of organism substance
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005153 ! synovial joint
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-03-12T01:42:07Z

[Term]
id: ZFA:0005155
name: cartilaginous joint
namespace: zebrafish_anatomy
def: "Is a joint where the ends of two bones are connected by cartilage." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "synchondrosis" EXACT []
xref: TAO:0005155
is_a: ZFA:0001596 ! joint
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-03-12T01:52:52Z

[Term]
id: ZFA:0005156
name: fibrous joint
namespace: zebrafish_anatomy
def: "A joint where fibrous tissue such as ligament connects two calcified tissues." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "syndesmoses" EXACT PLURAL []
synonym: "syndesmosis" EXACT []
xref: TAO:0005156
is_a: ZFA:0001596 ! joint
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-03-12T01:54:12Z

[Term]
id: ZFA:0005157
name: tela chorioidea tectal ventricle
namespace: zebrafish_anatomy
def: "Tela chorioidea that lines the tectal ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "tela choroidea tectal ventricle" EXACT []
xref: TAO:0005157
is_a: ZFA:0000447 ! tela chorioidea
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000159 ! tectal ventricle
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Ceri
creation_date: 2009-04-02T01:30:05Z

[Term]
id: ZFA:0005158
name: tela chorioidea fourth ventricle
namespace: zebrafish_anatomy
def: "Tela chorioidea that lines the fourth ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "tela choroidea fourth ventricle" EXACT []
xref: TAO:0005158
is_a: ZFA:0000447 ! tela chorioidea
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000110 ! fourth ventricle
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Ceri
creation_date: 2009-04-02T01:40:34Z

[Term]
id: ZFA:0005159
name: tela chorioidea third ventricle
namespace: zebrafish_anatomy
def: "Tela chorioidea that lines the third ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "tela choroidea third ventricle" EXACT []
xref: TAO:0005159
is_a: ZFA:0000447 ! tela chorioidea
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000161 ! third ventricle
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Ceri
creation_date: 2009-04-02T02:04:56Z

[Term]
id: ZFA:0005160
name: tela chorioidea telencephalic ventricle
namespace: zebrafish_anatomy
def: "Tela chorioidea that lines the telencephalic ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "tela choroidea telencephalic ventricle" EXACT []
xref: TAO:0005160
is_a: ZFA:0000447 ! tela chorioidea
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000696 ! telencephalic ventricle
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Ceri
creation_date: 2009-04-02T02:20:33Z

[Term]
id: ZFA:0005161
name: hepatic artery
namespace: zebrafish_anatomy
def: "Artery that supplies blood to the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005161
is_a: ZFA:0000005 ! artery
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-04-20T03:43:46Z

[Term]
id: ZFA:0005162
name: digestive system duct
namespace: zebrafish_anatomy
def: "Ducts that transport enzymes between organs in the digestive system." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005162
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: start ZFS:0000025 ! segmentation:10-13 somites
created_by: Ceri
creation_date: 2009-04-20T04:51:36Z

[Term]
id: ZFA:0005163
name: bile canaliculus
namespace: zebrafish_anatomy
def: "Intercellular space surrounded by the basal surface of the hepatocytes that collect bile." [GOC:cvs, ORCiD:0000-0002-2244-7917]
comment: Should be located in rather then part_of when we get the appropriate relation.
xref: TAO:0005163
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-20T05:33:42Z

[Term]
id: ZFA:0005164
name: bile ductule
namespace: zebrafish_anatomy
def: "Digestive system duct that collects bile from the canaliculus and transports bile through the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005164
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-20T05:39:12Z

[Term]
id: ZFA:0005165
name: common bile duct
namespace: zebrafish_anatomy
def: "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005165
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001100 ! hepatic duct
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-20T05:43:23Z

[Term]
id: ZFA:0005166
name: cystic duct
namespace: zebrafish_anatomy
def: "Duct that connects the gall bladder and the common bile duct." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005166
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000036 ! liver and biliary system
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-20T05:56:39Z

[Term]
id: ZFA:0005167
name: hepatopancreatic ampulla
namespace: zebrafish_anatomy
def: "Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine." [ZFIN:ZDB-PUB-070212-11, ZFIN:ZDB-PUB-080414-12]
synonym: "ampulla of Vater" EXACT []
synonym: "papilla duodeni major" RELATED []
synonym: "papilla Vateri" EXACT []
xref: TAO:0005167
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000339 ! digestive system
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-20T05:59:27Z

[Term]
id: ZFA:0005168
name: central vein
namespace: zebrafish_anatomy
def: "Vein that is central to a lobule in the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005168
is_a: ZFA:0000082 ! vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-04-21T02:46:13Z

[Term]
id: ZFA:0005169
name: intrahepatic bile duct
namespace: zebrafish_anatomy
def: "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005169
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-27T04:19:40Z

[Term]
id: ZFA:0005170
name: extrahepatic duct
namespace: zebrafish_anatomy
def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005170
is_a: ZFA:0005162 ! digestive system duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001100 ! hepatic duct
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-27T04:26:36Z

[Term]
id: ZFA:0005171
name: duct
namespace: zebrafish_anatomy
def: "A tube shaped multi-tissue structure lined with epithelial cells that collects secretions and routes them to their destination." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005171
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-04-27T04:45:59Z

[Term]
id: ZFA:0005172
name: left liver lobe
namespace: zebrafish_anatomy
def: "Portion of the liver which develops on the fish's left side." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "1st lobe" EXACT []
synonym: "first lobe" EXACT []
xref: TAO:0005172
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000033 ! hatching:long-pec
created_by: Ceri
creation_date: 2009-04-27T05:51:33Z

[Term]
id: ZFA:0005173
name: right liver lobe
namespace: zebrafish_anatomy
def: "Portion of the liver which develops on the fish's right side adjacent to the gall bladder." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "2nd lobe" EXACT []
synonym: "gall bladder lobe" EXACT []
synonym: "second lobe" EXACT []
xref: TAO:0005173
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-04-27T05:59:16Z

[Term]
id: ZFA:0005174
name: ventral liver lobe
namespace: zebrafish_anatomy
def: "Portion of the liver which develops on the fish's ventral side." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "3rd lobe" EXACT []
synonym: "third lobe" EXACT []
xref: TAO:0005174
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000123 ! liver
relationship: start ZFS:0000040 ! larval:days 14-20
created_by: Ceri
creation_date: 2009-04-27T06:04:51Z

[Term]
id: ZFA:0005175
name: CoPA
namespace: zebrafish_anatomy
def: "An interneuron in the spinal cord.  CoPA are bipolar with \"T\" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-274, ZFIN:ZDB-PUB-961014-649]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "primary commissural interneuron" EXACT []
xref: TAO:0005175
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T01:41:54Z

[Term]
id: ZFA:0005176
name: CoSA
namespace: zebrafish_anatomy
def: "An interneuron of the spinal cord. CoSA,  have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-649]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "secondary commissural interneuron" EXACT []
xref: TAO:0005176
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T02:07:49Z

[Term]
id: ZFA:0005177
name: VeLD
namespace: zebrafish_anatomy
def: "An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon." [ZFIN:ZDB-PUB-961014-649]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "V2b interneuron" RELATED []
synonym: "ventral longitudinal interneuron" EXACT []
xref: TAO:0005177
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T02:14:18Z

[Term]
id: ZFA:0005178
name: DoLA
namespace: zebrafish_anatomy
def: "An interneuron of the spinal cord." [ZFIN:ZDB-PUB-961014-649]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "dorsal longitudinal interneuron" EXACT []
xref: TAO:0005178
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T02:21:58Z

[Term]
id: ZFA:0005179
name: MiP motor neuron
namespace: zebrafish_anatomy
def: "A primary motor neuron that is part of the spinal cord.   The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-814]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle primary motoneuron" EXACT []
xref: TAO:0005179
is_a: ZFA:0009244 ! primary motor neuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T04:02:28Z

[Term]
id: ZFA:0005180
name: RoP motor neuron
namespace: zebrafish_anatomy
def: "A primary motoneuron that is part of the spinal cord.  The axon of the CaP motoneuron on emerging from the ventral root.  At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-814]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "rostral primary motoneuron" EXACT []
xref: TAO:0005180
is_a: ZFA:0009244 ! primary motor neuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T04:05:40Z

[Term]
id: ZFA:0005181
name: VaP motor neuron
namespace: zebrafish_anatomy
def: "A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development." [ZFIN:ZDB-PUB-961014-265, ZFIN:ZDB-PUB-961014-276]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "variable primary motoneuron" EXACT []
xref: TAO:0005181
is_a: ZFA:0009244 ! primary motor neuron
relationship: end ZFS:0000000 ! unknown
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-06-18T04:38:21Z

[Term]
id: ZFA:0005183
name: MiD2i
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere.  The axonal projection is ipsilateral." [ZFIN:ZDB-PUB-961014-770]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle dorsal 2 ipsilateral interneuron " EXACT []
xref: TAO:0005183
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-18T05:05:22Z

[Term]
id: ZFA:0005184
name: MiD2cl
namespace: zebrafish_anatomy
def: "Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere.  The fibers pass through the lateral longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle dorsal 2 contralateral llf interneuron " EXACT []
xref: TAO:0005184
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-18T05:16:33Z

[Term]
id: ZFA:0005185
name: MiD2cm
namespace: zebrafish_anatomy
def: "Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere.  The fibers pass through the medial longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle dorsal 2 contralateral mlf interneuron " EXACT []
xref: TAO:0005185
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-18T05:18:53Z

[Term]
id: ZFA:0005186
name: CoB
namespace: zebrafish_anatomy
def: "A bifurcate interneuron.  It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body." [ZFIN:ZDB-PUB-961014-649]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.\n\nThis may be the same as CoBL.
subset: cell_slim
synonym: "bifurcate commissural interneuron" EXACT []
xref: TAO:0005186
is_a: ZFA:0005231 ! bifurcate interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T11:38:16Z

[Term]
id: ZFA:0005187
name: MiM1
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "middle medial interneuron " EXACT []
xref: TAO:0005187
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T12:31:49Z

[Term]
id: ZFA:0005188
name: MiR1
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "middle rostral 1 interneuron " EXACT []
xref: TAO:0005188
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T12:33:39Z

[Term]
id: ZFA:0005189
name: MiR2
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "middle rostral 2 interneuron " EXACT []
xref: TAO:0005189
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T12:40:02Z

[Term]
id: ZFA:0005190
name: MiV1
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "middle ventral 1 neuron " EXACT []
xref: TAO:0005190
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001032 ! rhombomere 4
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T01:10:53Z

[Term]
id: ZFA:0005191
name: MiV2
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "middle ventral 2 neuron " EXACT []
xref: TAO:0005191
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000823 ! rhombomere 5
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T01:15:56Z

[Term]
id: ZFA:0005192
name: RoI2C
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal  neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral intermediate 2 caudal interneuron " EXACT []
xref: TAO:0005192
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T02:39:18Z

[Term]
id: ZFA:0005193
name: RoI2R
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral intermediate 2 rostral interneuron " EXACT []
xref: TAO:0005193
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T03:08:46Z

[Term]
id: ZFA:0005194
name: RoL1
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially.  The branching of RoL1 collaterals within the medulla, occur at multiple levels." [ZFIN:ZDB-PUB-030319-6, ZFIN:ZDB-PUB-961014-770]
comment: May have 12  neurons in each hemi rhombomere ZDB-PUB-060217-9.\n7 neurons in each hemi rhombomere 080227-17 and 931014-770.
subset: cell_slim
synonym: "rostral lateral 1 interneuron " EXACT []
xref: TAO:0005194
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-23T03:22:51Z

[Term]
id: ZFA:0005195
name: MiD3cl
namespace: zebrafish_anatomy
def: "Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere.  The fibers pass through the lateral longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle dorsal 3 contralateral llf interneuron " EXACT []
xref: TAO:0005195
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-22T05:10:40Z

[Term]
id: ZFA:0005196
name: MiD3cm
namespace: zebrafish_anatomy
def: "Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere.  The fibers pass through the medial longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle dorsal 3 contralateral mlf interneuron " EXACT []
xref: TAO:0005196
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-22T05:13:02Z

[Term]
id: ZFA:0005197
name: MiD3i
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral." [ZFIN:ZDB-PUB-961014-770]
comment: This term is a leaf node in the zebrafish AO and is not in the CL.
subset: cell_slim
synonym: "middle dorsal 3 ipsilateral interneuron " EXACT []
xref: TAO:0005197
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000069 ! rhombomere 6
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-22T05:15:04Z

[Term]
id: ZFA:0005198
name: RoL2
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral lateral 2 interneuron " EXACT []
xref: TAO:0005198
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-26T04:33:20Z

[Term]
id: ZFA:0005199
name: RoL2r
namespace: zebrafish_anatomy
def: "The rostral RoL2 interneuron that is part of rhombomere 2." [ZFIN:ZDB-PUB-090217-9]
subset: cell_slim
synonym: "rostral lateral 2 rostral interneuron " EXACT []
xref: TAO:0005199
is_a: ZFA:0005198 ! RoL2
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-26T04:48:39Z

[Term]
id: ZFA:0005200
name: RoL2c
namespace: zebrafish_anatomy
def: "The caudal RoL2 interneuron that is part of rhombomere 2." [ZFIN:ZDB-PUB-090217-9]
subset: cell_slim
synonym: "rostral lateral 2 caudal interneuron " EXACT []
xref: TAO:0005200
is_a: ZFA:0005198 ! RoL2
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-26T04:49:28Z

[Term]
id: ZFA:0005201
name: RoL3
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral lateral 3 interneuron " EXACT []
xref: TAO:0005201
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-26T05:06:36Z

[Term]
id: ZFA:0005202
name: RoM1c
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral medial 1 caudal interneuron " EXACT []
xref: TAO:0005202
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-26T05:08:26Z

[Term]
id: ZFA:0005203
name: RoM1r
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral medial 1 rostral interneuron " EXACT []
xref: TAO:0005203
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001031 ! rhombomere 1
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-26T05:09:50Z

[Term]
id: ZFA:0005204
name: RoV3
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral ventral 3 interneuron " EXACT []
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-29T02:14:08Z

[Term]
id: ZFA:0005205
name: RoM2l
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral medial 2 lateral interneuron " EXACT []
xref: TAO:0005205
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-29T02:43:42Z

[Term]
id: ZFA:0005206
name: RoM2m
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral medial 2 medial interneuron " EXACT []
xref: TAO:0005206
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000822 ! rhombomere 2
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-29T02:45:01Z

[Term]
id: ZFA:0005207
name: RoM3l
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral medial 3 lateral interneuron " EXACT []
xref: TAO:0005207
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-29T02:46:19Z

[Term]
id: ZFA:0005208
name: RoM3m
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "rostral medial 3 medial interneuron " RELATED []
xref: TAO:0005208
is_a: ZFA:0005209 ! hindbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000948 ! rhombomere 3
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-06-29T02:52:04Z

[Term]
id: ZFA:0005209
name: hindbrain interneuron
namespace: zebrafish_anatomy
def: "Is a CNS interneuron that is part of the hindbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0005209
is_a: ZFA:0009191 ! CNS interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000029 ! hindbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-08T10:21:27Z

[Term]
id: ZFA:0005210
name: midbrain interneuron
namespace: zebrafish_anatomy
def: "CNS interneurons located in the midbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0005210
is_a: ZFA:0009191 ! CNS interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-08T11:14:28Z

[Term]
id: ZFA:0005211
name: MeL
namespace: zebrafish_anatomy
def: "Midbrain interneuron in the lateral midbrain." [ZFIN:ZDB-PUB-961014-758]
subset: cell_slim
synonym: "mesencephalon lateral interneuron" EXACT []
xref: TAO:0005211
is_a: ZFA:0005210 ! midbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-08T12:35:19Z

[Term]
id: ZFA:0005212
name: MeM
namespace: zebrafish_anatomy
def: "Midbrain interneuron located in the medial midbrain.  Neuron bodies are part of a cluster." [ZFIN:ZDB-PUB-961014-758]
subset: cell_slim
synonym: "mesencephalon medial interneuron" EXACT []
xref: TAO:0005212
is_a: ZFA:0005210 ! midbrain interneuron
is_a: ZFA:0005865 ! reticulospinal neuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-08T01:05:12Z

[Term]
id: ZFA:0005213
name: MeLr
namespace: zebrafish_anatomy
def: "Midbrain interneuron at the rostral position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9]
subset: cell_slim
synonym: "mesencephalon lateral rostral interneuron" EXACT []
xref: TAO:0005213
is_a: ZFA:0005210 ! midbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-08T01:26:45Z

[Term]
id: ZFA:0005214
name: MeLc
namespace: zebrafish_anatomy
def: "Midbrain interneuron at the caudal position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9]
subset: cell_slim
synonym: "mesencephalon lateral caudal interneuron" EXACT []
xref: TAO:0005214
is_a: ZFA:0005210 ! midbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-08T01:29:37Z

[Term]
id: ZFA:0005215
name: MeLm
namespace: zebrafish_anatomy
def: "Midbrain interneuron at the medial position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9]
subset: cell_slim
synonym: "mesencephalon lateral medial interneuron" EXACT []
xref: TAO:0005215
is_a: ZFA:0005210 ! midbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-09T02:21:45Z

[Term]
id: ZFA:0005216
name: MeM1
namespace: zebrafish_anatomy
def: "Midbrain interneuron located in the medial midbrain.  The neuron body is positioned away from the MeM cluster." [ZFIN:ZDB-PUB-090217-9]
subset: cell_slim
synonym: "mesencephalon medial 1 interneuron" EXACT []
xref: TAO:0005216
is_a: ZFA:0005210 ! midbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000128 ! midbrain
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-09T02:23:47Z

[Term]
id: ZFA:0005217
name: CaV
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "caudal ventral interneuron" EXACT []
xref: TAO:0005217
is_a: ZFA:0005209 ! hindbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000949 ! rhombomere 7
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-09T02:33:31Z

[Term]
id: ZFA:0005218
name: CaD
namespace: zebrafish_anatomy
def: "Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770]
subset: cell_slim
synonym: "caudal dorsal interneuron" EXACT []
xref: TAO:0005218
is_a: ZFA:0005209 ! hindbrain interneuron
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000949 ! rhombomere 7
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-09T02:42:52Z

[Term]
id: ZFA:0005219
name: choroid plexus vascular circuit
namespace: zebrafish_anatomy
def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11]
synonym: "choroid vascular circuit" RELATED []
synonym: "CVC" EXACT []
xref: TAO:0005219
is_a: ZFA:0000099 ! brain vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001443 ! choroid plexus
relationship: start ZFS:0000038 ! larval:day 6
created_by: Ceri
creation_date: 2009-07-09T02:58:20Z

[Term]
id: ZFA:0005220
name: larval melanophore stripe
namespace: zebrafish_anatomy
def: "A melanophore stripe that forms the immature pigment pattern." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0005220
is_a: ZFA:0001463 ! melanophore stripe
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000030 ! pharyngula:prim-15
created_by: Ceri
creation_date: 2009-07-09T03:59:45Z

[Term]
id: ZFA:0005221
name: dorsal larval melanophore stripe
namespace: zebrafish_anatomy
def: "A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0005221
is_a: ZFA:0005220 ! larval melanophore stripe
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000030 ! pharyngula:prim-15
created_by: Ceri
creation_date: 2009-07-09T04:04:10Z

[Term]
id: ZFA:0005222
name: ventral larval melanophore stripe
namespace: zebrafish_anatomy
def: "A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0005222
is_a: ZFA:0005220 ! larval melanophore stripe
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000031 ! pharyngula:prim-25
created_by: Ceri
creation_date: 2009-07-09T04:05:57Z

[Term]
id: ZFA:0005223
name: lateral larval melanophore stripe
namespace: zebrafish_anatomy
def: "The larval melanophore stripe that is at the level of the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0005223
is_a: ZFA:0005220 ! larval melanophore stripe
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000032 ! pharyngula:high-pec
created_by: Ceri
creation_date: 2009-07-09T04:29:18Z

[Term]
id: ZFA:0005224
name: yolk larval melanophore stripe
namespace: zebrafish_anatomy
def: "The larval melanophore stripe that forms a band over the ventral surface of the yolk sac." [ZFIN:ZDB-PUB-961014-576]
xref: TAO:0005224
is_a: ZFA:0005220 ! larval melanophore stripe
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2009-07-09T04:30:34Z

[Term]
id: ZFA:0005225
name: lower lip
namespace: zebrafish_anatomy
def: "Lip that covers the lower portion of the mouth." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002060
is_a: ZFA:0007006 ! lip
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-09T04:42:58Z

[Term]
id: ZFA:0005226
name: upper lip
namespace: zebrafish_anatomy
def: "Lip that covers the upper portion of the mouth." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001970
is_a: ZFA:0007006 ! lip
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-09T04:43:52Z

[Term]
id: ZFA:0005227
name: protoneuromast
namespace: zebrafish_anatomy
def: "A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070907-34, ZFIN:ZDB-PUB-080630-20]
synonym: "immature neuromast" RELATED []
synonym: "proto neuromast" RELATED []
synonym: "proto-neuromast" RELATED []
xref: TAO:0005227
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0000034 ! lateral line system
relationship: start ZFS:0000028 ! segmentation:26+ somites
created_by: Ceri
creation_date: 2009-07-09T04:49:53Z

[Term]
id: ZFA:0005229
name: optic choroid
namespace: zebrafish_anatomy
def: "A portion of tissue that contains the choroid vasculature. It lies at the back of the eye." [GOC:cvs, ISBN:1402070861, ORCiD:0000-0002-2244-7917]
synonym: "choroid" EXACT [ISBN:1402070861]
xref: TAO:0005229
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005567 ! posterior segment eye
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-14T02:05:16Z

[Term]
id: ZFA:0005230
name: CoBL
namespace: zebrafish_anatomy
def: "A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord  ventral to the Mauthner axons before bifurcating and extending dorsally." [ZFIN:ZDB-PUB-010807-17]
subset: cell_slim
synonym: "commissural bifurcating longitudinal" EXACT []
xref: TAO:0005230
is_a: ZFA:0005231 ! bifurcate interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-17T01:12:14Z

[Term]
id: ZFA:0005231
name: bifurcate interneuron
namespace: zebrafish_anatomy
def: "Is a spinal interneuron that has an axon that splits into roughly equal size branches." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0005231
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-07-17T01:22:50Z

[Term]
id: ZFA:0005232
name: MCoD
namespace: zebrafish_anatomy
def: "A multipolar  interneuron with branching dendrites.  The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally." [ZFIN:ZDB-PUB-010807-17]
subset: cell_slim
synonym: "larval VeLD" RELATED []
synonym: "multipolar commissural descending interneuron" EXACT []
xref: TAO:0005232
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-07-17T03:46:32Z

[Term]
id: ZFA:0005233
name: CiD
namespace: zebrafish_anatomy
def: "A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally  and caudally and sometimes has a minor ascending branch." [ZFIN:ZDB-PUB-010807-17]
subset: cell_slim
synonym: "circumferential descending interneuron" EXACT []
synonym: "commissural descending interneurons" EXACT [ZFIN:ZDB-PUB-081114-2]
synonym: "V2a interneuron" RELATED []
xref: TAO:0005233
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-07-17T03:55:01Z

[Term]
id: ZFA:0005234
name: CoLA
namespace: zebrafish_anatomy
def: "A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has  midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally.  Axon has minor descending branch." [ZFIN:ZDB-PUB-010807-17]
subset: cell_slim
synonym: "commissural longitudinal ascending interneuron" EXACT []
xref: TAO:0005234
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-07-17T04:14:51Z

[Term]
id: ZFA:0005235
name: UCoD
namespace: zebrafish_anatomy
def: "A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching.  The axon extends ventrally, lateral to the Mauthner axons before crssoing the cord and descending ventrally." [ZFIN:ZDB-PUB-010807-17]
subset: cell_slim
synonym: "unipolar commissural descending interneuron" RELATED []
xref: TAO:0005235
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-07-17T04:26:07Z

[Term]
id: ZFA:0005236
name: basophilic erythroblast
namespace: zebrafish_anatomy
def: "A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared." [ZFIN:ZDB-PUB-070221-1]
subset: cell_slim
synonym: "basophilic normoblast" EXACT [ZFIN:ZDB-PUB-070221-1]
synonym: "early erythroblast" EXACT [ZFIN:ZDB-PUB-070221-1]
synonym: "early normoblast" RELATED [ZFIN:ZDB-PUB-070221-1]
synonym: "prorubricyte" EXACT [ZFIN:ZDB-PUB-070221-1]
xref: CL:0000549
xref: TAO:0005236
is_a: ZFA:0005237 ! erythroblast
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000030 ! pharyngula:prim-15
created_by: Ceri
creation_date: 2009-08-10T05:29:27Z

[Term]
id: ZFA:0005237
name: erythroblast
namespace: zebrafish_anatomy
def: "A nucleated precursor of an erythrocyte." [ZFIN:ZDB-PUB-070221-1]
subset: cell_slim
synonym: "normoblast" EXACT []
xref: CL:0000765
xref: TAO:0005237
is_a: ZFA:0009325 ! erythroid lineage cell
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-10T05:13:41Z

[Term]
id: ZFA:0005238
name: juxtaglomerular cell
namespace: zebrafish_anatomy
def: "A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation." [GOC:cvs, GOC:tfm, ORCiD:0000-0002-2244-7917, PMID:11457727]
subset: cell_slim
synonym: "kidney granular cell" EXACT []
synonym: "renin secreting cell" EXACT []
xref: CL:0000648
xref: TAO:0005238
is_a: ZFA:0009118 ! smooth muscle cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000529 ! kidney
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-10T05:41:07Z

[Term]
id: ZFA:0005239
name: micropylar cell
namespace: zebrafish_anatomy
def: "Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte.  The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg." [ZFIN:ZDB-PUB-080630-14]
subset: cell_slim
synonym: "plug cell" EXACT []
xref: CL:0007022
xref: TAO:0005239
is_a: ZFA:0009000 ! cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001110 ! ovarian follicle
relationship: start ZFS:0000043 ! juvenile:days 45-89
created_by: Ceri
creation_date: 2009-08-10T06:26:10Z

[Term]
id: ZFA:0005240
name: Kolmer-Agduhr neuron
namespace: zebrafish_anatomy
def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. KA neurons are the dorsal population of CSF-cNs that originate from pMN. The apical extension of dorsal CSF-cNs is more extended along the border of the central canal  than for ventral CSF-cNs. Dorsal CSF-cNs contact V0-v cells and project onto CoPA sensory interneuron and respond to lateral bending of the spinal cord." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-080825-21, ZFIN:ZDB-PUB-170409-2]
subset: cell_slim
synonym: "dorsal CSF-cN" EXACT [ZFIN:ZDB-PUB-170409-2]
synonym: "dorsal CSF-cNs" EXACT PLURAL [ZFIN:ZDB-PUB-170409-2]
synonym: "KA cell" EXACT []
synonym: "KA interneuron" EXACT [ZFIN:ZDB-PUB-041115-5]
synonym: "KA neuron" EXACT [ZFIN:ZDB-PUB-980624-10]
synonym: "Kolmer-Agduhr cell" EXACT []
xref: CL:0005007
xref: TAO:0005240
is_a: ZFA:0007120 ! cerebrospinal fluid contacting neuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000023 ! segmentation:1-4 somites
created_by: Ceri
creation_date: 2009-08-11T02:50:27Z

[Term]
id: ZFA:0005241
name: polychromatophilic erythroblast
namespace: zebrafish_anatomy
def: "A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely blue color, but takes on an acidophilic tint, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps." [ZFIN:ZDB-PUB-070221-1]
subset: cell_slim
synonym: "intermediate erythroblast" EXACT []
synonym: "intermediate normoblast" RELATED []
synonym: "polychromatic erythroblast" EXACT []
synonym: "polychromatic normoblast" EXACT []
synonym: "polychromatophilic normoblast" RELATED []
synonym: "rubricyte" EXACT []
xref: CL:0000550
xref: TAO:0005241
is_a: ZFA:0005237 ! erythroblast
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-11T03:38:32Z

[Term]
id: ZFA:0005242
name: multi-ciliated epithelial cell
namespace: zebrafish_anatomy
alt_id: ZFA:0009377
def: "A ciliated epithelial cell with many cilia." [CL:Curator]
subset: cell_slim
synonym: "multiciliated epithelial cell" EXACT []
xref: CL:0005012
xref: TAO:0005242
is_a: ZFA:0009035 ! ciliated epithelial cell
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-11T04:29:39Z

[Term]
id: ZFA:0005243
name: single ciliated epithelial cell
namespace: zebrafish_anatomy
alt_id: ZFA:0009378
def: "A ciliated epithelial cell with a single cilium." [CL:curator]
subset: cell_slim
synonym: "single-ciliated epithelial cell" EXACT []
xref: CL:0005013
xref: TAO:0005243
is_a: ZFA:0009035 ! ciliated epithelial cell
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-11T04:30:15Z

[Term]
id: ZFA:0005244
name: auditory epithelial support cell
namespace: zebrafish_anatomy
def: "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells." [CL:curator]
subset: cell_slim
synonym: "auditory support cell" EXACT []
xref: CL:0005014
xref: TAO:0005244
is_a: ZFA:0009000 ! cell
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-11T04:41:03Z

[Term]
id: ZFA:0005245
name: xanthoblast
namespace: zebrafish_anatomy
alt_id: ZFA:0005330
def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore." [CL:curator]
subset: cell_slim
xref: CL:0005002
xref: TAO:0002148
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0009165 ! neural crest cell
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-11T04:53:40Z

[Term]
id: ZFA:0005246
name: regeneration fibroblast
namespace: zebrafish_anatomy
def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
synonym: "blastemal fibroblast" EXACT []
synonym: "blastemal fibroblasts" EXACT PLURAL []
xref: TAO:0005246
is_a: ZFA:0009026 ! fibroblast
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005147 ! regenerating tissue
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-08-12T01:43:26Z

[Term]
id: ZFA:0005247
name: CiA
namespace: zebrafish_anatomy
def: "Interneurons of the spinal cord that arise from the V1 proliferation domain.  The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,.  CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord." [ZFIN:ZDB-PUB-040625-12, ZFIN:ZDB-PUB-060418-1]
subset: cell_slim
synonym: "circumferential ascending interneuron" EXACT []
synonym: "V1 interneuron" RELATED []
xref: TAO:0005247
is_a: ZFA:0000778 ! spinal cord interneuron
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-08-21T04:22:15Z

[Term]
id: ZFA:0005248
name: trans-choroid plexus branch
namespace: zebrafish_anatomy
def: "Vein segment that connects the PCeVs in the choroid plexus." [ZFIN:ZDB-PUB-080908-10]
synonym: "TCB" EXACT [ZFIN:ZDB-PUB-080908-10]
xref: TAO:0005248
is_a: ZFA:0000082 ! vein
relationship: develops_from ZFA:0005027 ! posterior cerebral vein
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005219 ! choroid plexus vascular circuit
relationship: start ZFS:0000038 ! larval:day 6
created_by: Ceri
creation_date: 2009-11-02T04:07:52Z

[Term]
id: ZFA:0005249
name: vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0001079
xref: TAO:0005249
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000010 ! cardiovascular system
relationship: start ZFS:0000026 ! segmentation:14-19 somites
created_by: Ceri
creation_date: 2009-11-10T02:31:54Z

[Term]
id: ZFA:0005250
name: capillary
namespace: zebrafish_anatomy
def: "Microvessel of the blood circulation system lined with vascular endothelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005250
is_a: ZFA:0005251 ! microcirculatory vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001079 ! blood vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T01:15:32Z

[Term]
id: ZFA:0005251
name: microcirculatory vessel
namespace: zebrafish_anatomy
def: "A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "vasculature" RELATED []
xref: TAO:0005251
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005249 ! vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T01:16:24Z

[Term]
id: ZFA:0005252
name: lymphatic capillary
namespace: zebrafish_anatomy
def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005252
is_a: ZFA:0005251 ! microcirculatory vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005105 ! lymph vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T01:27:39Z

[Term]
id: ZFA:0005253
name: renal glomerular capsule epithelium
namespace: zebrafish_anatomy
def: "Simple squamous epithelium that lines the capsule of the renal glomerulus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "parietal epithelial layer" EXACT []
xref: TAO:0005253
is_a: ZFA:0001498 ! simple squamous epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005254 ! renal glomerular capsule
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2009-11-11T01:39:19Z

[Term]
id: ZFA:0005254
name: renal glomerular capsule
namespace: zebrafish_anatomy
def: "Portion of tissue that encapsulates the glomerulus of the renal corpuscle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "Bowman's capsule " EXACT []
xref: TAO:0005254
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005281 ! renal corpuscle
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2009-11-11T01:45:02Z

[Term]
id: ZFA:0005255
name: arteriole
namespace: zebrafish_anatomy
def: "Multi-tissue structure part of the blood vasculature. Feeds into capillaries.   Arterioles carry blood away from the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002138
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001079 ! blood vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T01:46:54Z

[Term]
id: ZFA:0005256
name: intervillus pockets
namespace: zebrafish_anatomy
def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located.  In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and  shed from the villus tips." [ZFIN:ZDB-PUB-050209-3]
synonym: "intestinal crypt" RELATED [ZFIN:ZDB-PUB-090217-11]
xref: TAO:0005256
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005124 ! intestinal epithelium
relationship: start ZFS:0000037 ! larval:day 5
created_by: Ceri
creation_date: 2010-01-07T12:26:13Z

[Term]
id: ZFA:0005257
name: blood vessel endothelium
namespace: zebrafish_anatomy
def: "The vascular endothelium that lines blood vasculature." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005257
is_a: ZFA:0001639 ! vascular endothelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T02:16:38Z

[Term]
id: ZFA:0005258
name: lymph vessel endothelium
namespace: zebrafish_anatomy
def: "The vascular endothelium that lines the lymph vessels." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005258
is_a: ZFA:0001639 ! vascular endothelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005844 ! lymph vessel
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T02:18:09Z

[Term]
id: ZFA:0005259
name: continuous blood vessel endothelium
namespace: zebrafish_anatomy
def: "Blood vessel endothelium that has tight junctions between the endothelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005259
is_a: ZFA:0005257 ! blood vessel endothelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T02:19:54Z

[Term]
id: ZFA:0005260
name: fenestrated blood vessel endothelium
namespace: zebrafish_anatomy
def: "Blood vessel endothelium that has pores that allow passage small molecules and proteins." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005260
is_a: ZFA:0005257 ! blood vessel endothelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T02:21:55Z

[Term]
id: ZFA:0005261
name: sinusoidal blood vessel endothelium
namespace: zebrafish_anatomy
def: "Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass.  The basal lamina and gap junctions  may be discontinuous." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005261
is_a: ZFA:0005260 ! fenestrated blood vessel endothelium
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-11-11T02:51:27Z

[Term]
id: ZFA:0005262
name: caudal fin dorsal procurrent ray
namespace: zebrafish_anatomy
def: "Caudal procurrent ray that is dorsally located on the caudal fin skeleton.  There are 6 dorsal procurrent rays in the caudal fin." [TAO:curator, ZFIN:ZDB-PUB-031103-13]
synonym: "dorsal procurrent caudal-fin ray" EXACT []
xref: TAO:0001829
is_a: ZFA:0001584 ! caudal fin procurrent ray
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-02T02:06:39Z

[Term]
id: ZFA:0005263
name: caudal fin ventral procurrent ray
namespace: zebrafish_anatomy
def: "Caudal procurrent ray that is ventrally located on the caudal fin skeleton.  There are 5 ventral procurrent rays in the caudal fin." [TAO:curator, ZFIN:ZDB-PUB-031103-13]
synonym: "ventral procurrent ray" EXACT []
xref: TAO:0001830
is_a: ZFA:0001584 ! caudal fin procurrent ray
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-02T02:13:14Z

[Term]
id: ZFA:0005264
name: primordial ligament
namespace: zebrafish_anatomy
def: "Ligament that connects the maxilla with the lower jaw." [TAO:curator]
synonym: "articular-maxillary ligament " EXACT [doi:10.1111/j.1096-3642.1964.tb00493.x]
synonym: "ligamentum primordiale " EXACT []
synonym: "maxillo-mandibular ligament" EXACT []
xref: TAO:0001828
is_a: ZFA:0001675 ! ligament
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-02T02:28:51Z

[Term]
id: ZFA:0005265
name: premaxillary-maxillary ligament
namespace: zebrafish_anatomy
def: "Ligament that connects the premaxilla to the maxilla." [TAO:curator]
xref: TAO:0001827
is_a: ZFA:0001675 ! ligament
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-02T02:52:49Z

[Term]
id: ZFA:0005266
name: dorsal longitudinal fasciculus
namespace: zebrafish_anatomy
comment: The DLF in zebrafish is not homologous to the Mammalian DLF.  Mammalian DLF is in brain, the fish DLF is in spinal cord.
synonym: "DLF" RELATED []
is_a: ZFA:0000318 ! brainstem and spinal white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-02T04:19:10Z

[Term]
id: ZFA:0005267
name: erector muscle
namespace: zebrafish_anatomy
def: "Muscle that moves parts of the body in a superior direction to an erect position.  Antagonistic to depressor muscle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005267
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-03T05:15:15Z

[Term]
id: ZFA:0005268
name: adductor muscle
namespace: zebrafish_anatomy
def: "A muscle that brings a body part closer to the sagittal plane of the body." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002136
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-04T12:59:52Z

[Term]
id: ZFA:0005269
name: abductor muscle
namespace: zebrafish_anatomy
def: "A muscle that moves a body part away  from the sagittal plane of the body." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002135
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-04T01:05:41Z

[Term]
id: ZFA:0005270
name: depressor muscle
namespace: zebrafish_anatomy
def: "A muscle that moves body parts into an inferior direction or lowered position.  Antagonistic to erector muscle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005270
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-04T01:15:51Z

[Term]
id: ZFA:0005271
name: flexor muscle
namespace: zebrafish_anatomy
def: "A muscle that decrease the angle of a joint." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005271
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2009-12-04T01:20:04Z

[Term]
id: ZFA:0005272
name: immature gonad
namespace: zebrafish_anatomy
def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be  transiently intersexual where there is a  parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2]
synonym: "juvenile gonad" EXACT []
synonym: "juvenile ovary" EXACT [ZFIN:ZDB-PUB-070305-2]
xref: TAO:0005272
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0001262 ! gonad primordium
relationship: end ZFS:0000041 ! larval:days 21-29
relationship: part_of ZFA:0000632 ! reproductive system
relationship: start ZFS:0000040 ! larval:days 14-20
created_by: Ceri
creation_date: 2009-12-09T11:35:20Z

[Term]
id: ZFA:0005273
name: intestinal mucosal muscle
namespace: zebrafish_anatomy
def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11]
synonym: "intestinal lamina muscularis mucosae" RELATED [http://www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html]
xref: TAO:0005273
is_a: ZFA:0005274 ! smooth muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001338 ! intestine
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T01:36:48Z

[Term]
id: ZFA:0005274
name: smooth muscle
namespace: zebrafish_anatomy
def: "A non-striated muscle that is composed of spindle-shaped cells.  Smooth muscle usually is organized into sheets that line cavitated organs." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005274
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T02:57:18Z

[Term]
id: ZFA:0005275
name: arrector muscle
namespace: zebrafish_anatomy
def: "Fin muscle that is located on the anterior edge of the fin. Arrector muscles change the angle of the leading edge of the fin during swimming." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002147
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T04:50:10Z

[Term]
id: ZFA:0005276
name: inclinator muscle
namespace: zebrafish_anatomy
xref: TAO:0005276
is_a: ZFA:0005277 ! skeletal muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T04:51:38Z

[Term]
id: ZFA:0005277
name: skeletal muscle
namespace: zebrafish_anatomy
def: "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005277
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T05:06:51Z

[Term]
id: ZFA:0005278
name: enteric longitudinal muscle
namespace: zebrafish_anatomy
def: "Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut." [GOC:cvs, ORCiD:0000-0002-2244-7917]
is_a: ZFA:0005274 ! smooth muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001324 ! enteric musculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T05:48:52Z

[Term]
id: ZFA:0005279
name: enteric circular muscle
namespace: zebrafish_anatomy
def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005279
is_a: ZFA:0005274 ! smooth muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001324 ! enteric musculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T05:51:25Z

[Term]
id: ZFA:0005280
name: cardiac muscle
namespace: zebrafish_anatomy
def: "Muscle composed of cardiac muscle cells that is part of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005280
is_a: ZFA:0005145 ! muscle
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-07T06:04:03Z

[Term]
id: ZFA:0005281
name: renal corpuscle
namespace: zebrafish_anatomy
def: "The part of the nephron that filters blood." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "Malpighian corpuscle" EXACT []
xref: TAO:0005281
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005282 ! nephron
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T01:11:46Z

[Term]
id: ZFA:0005282
name: nephron
namespace: zebrafish_anatomy
def: "Functional unit of the kidney that filters waste." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002153
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000529 ! kidney
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T02:47:46Z

[Term]
id: ZFA:0005283
name: renal capsular space
namespace: zebrafish_anatomy
def: "Space between the renal glomerulus and the glomerular capsule.  Renal filtrate collects here then passes into the renal tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "Bowman's space" EXACT []
synonym: "inter-glomerular space" EXACT []
synonym: "urinary space" EXACT []
xref: TAO:0005283
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005281 ! renal corpuscle
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T02:51:01Z

[Term]
id: ZFA:0005284
name: glomerular capillary
namespace: zebrafish_anatomy
def: "Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1]
xref: TAO:0005284
is_a: ZFA:0005250 ! capillary
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001288 ! renal glomerulus
relationship: part_of ZFA:0005305 ! kidney vasculature
relationship: part_of ZFA:0005590 ! capillary loop nephron
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T03:00:45Z

[Term]
id: ZFA:0005285
name: glomerular basement membrane
namespace: zebrafish_anatomy
def: "Membrane between the mesonephric podocytes and the renal glomerular capillaries.  It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes.  The capillary membranes touch the GBM at contact points that are separated by pores.  The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1]
synonym: "glomerular filtration membrane" EXACT []
xref: TAO:0005285
is_a: ZFA:0001485 ! basal lamina
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001288 ! renal glomerulus
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T03:26:30Z

[Term]
id: ZFA:0005286
name: lamina densa
namespace: zebrafish_anatomy
def: "Middle layer of the glomerular basement membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005286
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005285 ! glomerular basement membrane
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T03:52:52Z

[Term]
id: ZFA:0005287
name: lamina rara interna
namespace: zebrafish_anatomy
def: "Layer of the glomerular basement membrane adjacent to the glomerular capillary." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005287
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005285 ! glomerular basement membrane
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T03:56:00Z

[Term]
id: ZFA:0005288
name: lamina rara externa
namespace: zebrafish_anatomy
def: "Layer of the glomerular basement membrane adjacent to the podocytes and capsular space." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005288
is_a: ZFA:0000382 ! acellular anatomical structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005285 ! glomerular basement membrane
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T03:56:32Z

[Term]
id: ZFA:0005289
name: renal duct
namespace: zebrafish_anatomy
def: "Tubes in the kidney that collect and transport urine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-071029-9]
xref: TAO:0005289
is_a: ZFA:0005171 ! duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000529 ! kidney
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-19T04:36:59Z

[Term]
id: ZFA:0005290
name: proximal convoluted tubule
namespace: zebrafish_anatomy
def: "Renal tubule that connects to the renal corpuscle." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005290
is_a: ZFA:0005289 ! renal duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001287 ! renal tubule
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T12:39:12Z

[Term]
id: ZFA:0005291
name: proximal straight tubule
namespace: zebrafish_anatomy
def: "Portion of the renal tubule which is just posterior to the proximal convoluted tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005291
is_a: ZFA:0005289 ! renal duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001287 ! renal tubule
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T12:41:23Z

[Term]
id: ZFA:0005292
name: distal late tubule
namespace: zebrafish_anatomy
def: "Portion of the renal tubule which is just posterior to the distal early tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005292
is_a: ZFA:0005289 ! renal duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001287 ! renal tubule
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T12:43:22Z

[Term]
id: ZFA:0005293
name: distal early tubule
namespace: zebrafish_anatomy
def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "distal early tubules" EXACT PLURAL []
xref: TAO:0005293
is_a: ZFA:0005289 ! renal duct
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001287 ! renal tubule
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T12:44:30Z

[Term]
id: ZFA:0005294
name: collecting duct
namespace: zebrafish_anatomy
def: "Renal duct that collects the output from renal tubules." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005294
is_a: ZFA:0005289 ! renal duct
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T01:17:47Z

[Term]
id: ZFA:0005295
name: axial blood vessel
namespace: zebrafish_anatomy
def: "Blood vessel that runs along the rostral-caudal axis of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005295
is_a: ZFA:0001073 ! axial vasculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:24:10Z

[Term]
id: ZFA:0005296
name: axial lymph vessel
namespace: zebrafish_anatomy
def: "Lymph vessel that runs along the rostral-caudal axis of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917]
is_a: ZFA:0001073 ! axial vasculature
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005105 ! lymph vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:24:34Z

[Term]
id: ZFA:0005297
name: cranial blood vessel
namespace: zebrafish_anatomy
def: "Blood vessel part of cranial vasculature." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005297
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001267 ! cranial vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:25:23Z

[Term]
id: ZFA:0005298
name: cranial lymph vessel
namespace: zebrafish_anatomy
def: "Lymph vessel that is located in the head." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005298
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001267 ! cranial vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:25:47Z

[Term]
id: ZFA:0005299
name: fin blood vessel
namespace: zebrafish_anatomy
def: "Blood vessel part of fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005299
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005095 ! fin vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:52:39Z

[Term]
id: ZFA:0005300
name: fin lymph vessel
namespace: zebrafish_anatomy
def: "Lymph vessel part of fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005300
is_a: ZFA:0005844 ! lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005095 ! fin vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:53:08Z

[Term]
id: ZFA:0005301
name: pectoral fin blood vessel
namespace: zebrafish_anatomy
def: "Blood vessel part of pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005301
is_a: ZFA:0005299 ! fin blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005096 ! pectoral fin vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:54:07Z

[Term]
id: ZFA:0005302
name: pectoral fin lymph vessel
namespace: zebrafish_anatomy
def: "Lymph vessel part of pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005302
is_a: ZFA:0005300 ! fin lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005096 ! pectoral fin vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:54:43Z

[Term]
id: ZFA:0005303
name: caudal fin lymph vessel
namespace: zebrafish_anatomy
def: "Lymph vessel that is located in the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005303
is_a: ZFA:0005300 ! fin lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005097 ! caudal fin vasculature
relationship: part_of ZFA:0005105 ! lymph vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:55:44Z

[Term]
id: ZFA:0005304
name: caudal fin blood vessel
namespace: zebrafish_anatomy
def: "Blood vessel located within the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005304
is_a: ZFA:0005299 ! fin blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005097 ! caudal fin vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-20T02:55:49Z

[Term]
id: ZFA:0005305
name: kidney vasculature
namespace: zebrafish_anatomy
def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the kidney." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005305
is_a: ZFA:0005249 ! vasculature
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000529 ! kidney
relationship: start ZFS:0000037 ! larval:day 5
created_by: Ceri
creation_date: 2010-01-20T03:02:06Z

[Term]
id: ZFA:0005306
name: kidney blood vessel
namespace: zebrafish_anatomy
def: "Blood vessel part of kidney." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005306
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005305 ! kidney vasculature
relationship: start ZFS:0000037 ! larval:day 5
created_by: Ceri
creation_date: 2010-01-20T03:02:27Z

[Term]
id: ZFA:0005307
name: afferent glomerular arteriole
namespace: zebrafish_anatomy
def: "Arteriole that carries blood into the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002139
is_a: ZFA:0005255 ! arteriole
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005281 ! renal corpuscle
relationship: part_of ZFA:0005305 ! kidney vasculature
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T03:02:56Z

[Term]
id: ZFA:0005308
name: efferent glomerular arteriole
namespace: zebrafish_anatomy
def: "Arteriole that carries blood out of the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0002140
is_a: ZFA:0005255 ! arteriole
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005281 ! renal corpuscle
relationship: part_of ZFA:0005305 ! kidney vasculature
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-01-20T03:05:49Z

[Term]
id: ZFA:0005309
name: pronephric glomerular capillary
namespace: zebrafish_anatomy
def: "Capillary that is part of the pronephric glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1]
xref: TAO:0005309
is_a: ZFA:0005250 ! capillary
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001557 ! pronephric glomerulus
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T11:29:44Z

[Term]
id: ZFA:0005310
name: pronephric glomerular capsule
namespace: zebrafish_anatomy
def: "Portion of tissue that encapsulates the glomerulus of the pronephros." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "Bowman's capsule " EXACT []
xref: TAO:0005310
is_a: ZFA:0001477 ! portion of tissue
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000151 ! pronephros
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T11:39:01Z

[Term]
id: ZFA:0005311
name: pronephric glomerular capsule epithelium
namespace: zebrafish_anatomy
def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "pronephric parietal epithelial layer" EXACT []
xref: TAO:0005311
is_a: ZFA:0001498 ! simple squamous epithelium
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0005310 ! pronephric glomerular capsule
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T11:40:01Z

[Term]
id: ZFA:0005312
name: pronephric capsular space
namespace: zebrafish_anatomy
def: "Space between the pronephric glomerulus and the pronephric glomerular capsule.  Renal filtrate collects here then passes into the pronephric tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "Bowman's space" EXACT []
synonym: "inter-glomerular space" EXACT []
synonym: "urinary space" EXACT []
xref: TAO:0005312
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0000151 ! pronephros
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T11:41:05Z

[Term]
id: ZFA:0005313
name: pronephric glomerular basement membrane
namespace: zebrafish_anatomy
def: "Membrane between the pronephric podocytes and the pronephric glomerular capillaries.  It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes.  The capillary membranes touch the GBM at contact points that are separated by pores.  The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1]
synonym: "pronephric glomerular filtration membrane" EXACT []
xref: TAO:0005313
is_a: ZFA:0001485 ! basal lamina
relationship: end ZFS:0000039 ! larval:days 7-13
relationship: part_of ZFA:0001557 ! pronephric glomerulus
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T11:59:03Z

[Term]
id: ZFA:0005314
name: blood vessel
namespace: zebrafish_anatomy
def: "Any of the tubular multi-tissue structures through which blood circulates in the body." [vHOG:curator]
xref: TAO:0002137
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001079 ! blood vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T02:17:51Z

[Term]
id: ZFA:0005315
name: venule
namespace: zebrafish_anatomy
def: "Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries.  Venules carry blood toward the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917]
xref: TAO:0005315
is_a: ZFA:0005314 ! blood vessel
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001079 ! blood vasculature
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-01-29T03:29:15Z

[Term]
id: ZFA:0005316
name: fin fold pectoral fin bud
namespace: zebrafish_anatomy
def: "Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold." [ZFIN:ZDB-PUB-001101-7, ZFIN:ZDB-PUB-990210-18]
synonym: "fin membrane pectoral fin bud" RELATED []
xref: TAO:0005316
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0000085 ! apical ectodermal ridge pectoral fin bud
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: part_of ZFA:0000141 ! pectoral fin bud
relationship: start ZFS:0000033 ! hatching:long-pec
created_by: Ceri
creation_date: 2010-02-10T02:37:39Z

[Term]
id: ZFA:0005317
name: pectoral fin fold
namespace: zebrafish_anatomy
def: "The functional webs of the paired fins.  They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-990210-18]
synonym: "pectoral fin membrane" EXACT []
xref: TAO:0005317
is_a: ZFA:0001488 ! multi-tissue structure
relationship: develops_from ZFA:0005316 ! fin fold pectoral fin bud
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001161 ! pectoral fin
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Ceri
creation_date: 2010-02-10T03:27:29Z

[Term]
id: ZFA:0005318
name: lymph node
namespace: zebrafish_anatomy
comment: Does not exist in teleosts.  Menke, A.L., Spitsbergen, J.M., Wolterbeek, A.P., and Woutersen, R.A. (2011) Normal Anatomy and Histology of the Adult Zebrafish. Toxicol. Pathol. 39(5): 759-775.
xref: TAO:0005318
is_obsolete: true
created_by: Ceri
creation_date: 2010-02-10T03:44:48Z

[Term]
id: ZFA:0005319
name: intersegmental lymph vessel
namespace: zebrafish_anatomy
def: "Lymph vessel that is located between the somites." [GOC:cvs, ORCiD:0000-0002-2244-7917]
synonym: "islv" EXACT []
xref: TAO:0005319
is_a: ZFA:0005105 ! lymph vasculature
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2010-02-10T05:28:00Z

[Term]
id: ZFA:0005320
name: dorsal longitudinal lymphatic vessel
namespace: zebrafish_anatomy
synonym: "dllv" EXACT []
xref: TAO:0005320
is_a: ZFA:0005296 ! axial lymph vessel
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000035 ! larval:protruding-mouth
created_by: Ceri
creation_date: 2010-02-10T05:29:42Z

[Term]
id: ZFA:0005321
name: vascular smooth muscle
namespace: zebrafish_anatomy
def: "Smooth muscle that is part of the blood vessel wall." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060216-3]
xref: TAO:0005321
is_a: ZFA:0005274 ! smooth muscle
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0005314 ! blood vessel
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-10T05:39:30Z

[Term]
id: ZFA:0005322
name: renal principal cell
namespace: zebrafish_anatomy
alt_id: ZFA:0009373
def: "A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: CL:0005009
xref: TAO:0005322
is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell
is_a: ZFA:0009374 ! kidney epithelial cell
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0001287 ! renal tubule
relationship: start ZFS:0000039 ! larval:days 7-13
created_by: Ceri
creation_date: 2010-02-10T06:32:34Z

[Term]
id: ZFA:0005323
name: ionocyte
namespace: zebrafish_anatomy
def: "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment." [ZFIN:ZDB-PUB-070625-18, ZFIN:ZDB-PUB-090310-19]
subset: cell_slim
xref: CL:0005006
xref: TAO:0005323
is_a: ZFA:0009034 ! epithelial cell
relationship: develops_from ZFA:0007123 ! ionocyte progenitor cell
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T01:18:18Z

[Term]
id: ZFA:0005324
name: gill ionocyte
namespace: zebrafish_anatomy
def: "Ionocyte located in the gills." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
xref: TAO:0005324
is_a: ZFA:0005323 ! ionocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000354 ! gill
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T01:22:16Z

[Term]
id: ZFA:0005325
name: integument ionocyte
namespace: zebrafish_anatomy
def: "Ionocyte located in the integument during embryonic and larval stages." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
synonym: "extrabranchial ionocyte" RELATED []
synonym: "skin ionocyte" EXACT []
xref: TAO:0005325
is_a: ZFA:0005323 ! ionocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T02:13:14Z

[Term]
id: ZFA:0005326
name: NaK ionocyte
namespace: zebrafish_anatomy
def: "Integument ionocyte rich in Na,K-ATPase." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
synonym: "NaK-MRC" RELATED []
synonym: "NaR cell" RELATED []
xref: TAO:0005326
is_a: ZFA:0005325 ! integument ionocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T02:29:17Z

[Term]
id: ZFA:0005327
name: vH ionocyte
namespace: zebrafish_anatomy
def: "Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase." [GOC:cvs, ORCiD:0000-0002-2244-7917]
subset: cell_slim
synonym: "HR cell" RELATED []
synonym: "VH-MRC" RELATED []
xref: TAO:0005327
is_a: ZFA:0005325 ! integument ionocyte
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000368 ! integument
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T02:32:20Z

[Term]
id: ZFA:0005328
name: iridoblast
namespace: zebrafish_anatomy
def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore." [CL:curator]
subset: cell_slim
xref: CL:0005001
xref: TAO:0005328
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0009165 ! neural crest cell
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T03:51:51Z

[Term]
id: ZFA:0005329
name: leucoblast
namespace: zebrafish_anatomy
def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore." [CL:curator]
subset: cell_slim
xref: CL:0005003
xref: TAO:0005329
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0009165 ! neural crest cell
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T03:51:51Z

[Term]
id: ZFA:0005331
name: pigment erythroblast
namespace: zebrafish_anatomy
def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore." [CL:curator]
subset: cell_slim
xref: CL:0005004
xref: TAO:0005331
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0009165 ! neural crest cell
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T03:51:51Z

[Term]
id: ZFA:0005332
name: cyanoblast
namespace: zebrafish_anatomy
def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore." [CL:curator]
subset: cell_slim
xref: CL:0005005
xref: TAO:0005332
is_a: ZFA:0009000 ! cell
relationship: develops_from ZFA:0009165 ! neural crest cell
relationship: end ZFS:0000032 ! pharyngula:high-pec
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-02-22T03:51:51Z

[Term]
id: ZFA:0005333
name: tongue
namespace: zebrafish_anatomy
def: "A multi-tissue mediosagittal cylinder-shaped structure, clearly isolated from the jaw and adhered by differentiated plicae to the lateral walls.  It is composed of a muscle surrounded by a squamous epithelium." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24]
xref: TAO:0005333
is_a: ZFA:0001488 ! multi-tissue structure
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000547 ! mouth
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T03:04:28Z

[Term]
id: ZFA:0005334
name: lip epithelium
namespace: zebrafish_anatomy
def: "The thick, high squamous-stratified epithelium that covers the lips.  It contains abundant melanocytes, many mucous cells and has well differentiated taste buds." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060921-12]
xref: TAO:0005334
is_a: ZFA:0001486 ! epithelium
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0007006 ! lip
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T03:12:14Z

[Term]
id: ZFA:0005335
name: swim bladder bud
namespace: zebrafish_anatomy
def: "Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder." [ZFIN:ZDB-PUB-090511-18, ZFIN:ZDB-PUB-100202-11]
xref: TAO:0005335
is_a: ZFA:0001105 ! embryonic structure
relationship: develops_from ZFA:0005336 ! presumptive swim bladder
relationship: end ZFS:0000033 ! hatching:long-pec
relationship: start ZFS:0000031 ! pharyngula:prim-25
created_by: Ceri
creation_date: 2010-03-18T03:59:33Z

[Term]
id: ZFA:0005336
name: presumptive swim bladder
namespace: zebrafish_anatomy
def: "Portion of the gut endoderm that will eventually develop into the swim bladder." [ZFIN:ZDB-PUB-090511-18]
synonym: "swim bladder anlage" RELATED [ZFIN:ZDB-PUB-100202-11]
xref: TAO:0005336
is_a: ZFA:0001116 ! presumptive structure
relationship: develops_from ZFA:0005737 ! intestinal rod
relationship: end ZFS:0000030 ! pharyngula:prim-15
relationship: part_of ZFA:0000112 ! gut
relationship: start ZFS:0000029 ! pharyngula:prim-5
created_by: Ceri
creation_date: 2010-03-18T04:20:42Z

[Term]
id: ZFA:0005337
name: anterior swim bladder bud
namespace: zebrafish_anatomy
def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:ZDB-PUB-090511-18]
xref: TAO:0002145
is_a: ZFA:0001477 ! portion of tissue
relationship: develops_from ZFA:0000076 ! swim bladder
relationship: end ZFS:0000040 ! larval:days 14-20
relationship: start ZFS:0000034 ! hatching:pec-fin
created_by: Ceri
creation_date: 2010-03-18T04:28:20Z

[Term]
id: ZFA:0005338
name: posterior recess
namespace: zebrafish_anatomy
def: "Posterior protrusion of the third ventricle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880]
synonym: "posterior recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27]
synonym: "recessus posterior " EXACT [ZFIN:ZDB-PUB-961014-1280]
xref: TAO:0005338
is_a: ZFA:0001643 ! anatomical space
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000161 ! third ventricle
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T05:40:53Z

[Term]
id: ZFA:0005339
name: nucleus of the lateral recess
namespace: zebrafish_anatomy
def: "Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle." [ZFIN:ZDB-PUB-091221-27]
xref: TAO:0005339
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000324 ! caudal periventricular hypothalamus
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T05:52:56Z

[Term]
id: ZFA:0005340
name: nucleus of the posterior recess
namespace: zebrafish_anatomy
def: "A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle." [ZFIN:ZDB-PUB-091221-27]
xref: TAO:0005340
is_a: ZFA:0001659 ! diencephalic nucleus
relationship: end ZFS:0000044 ! adult
relationship: part_of ZFA:0000324 ! caudal periventricular hypothalamus
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T05:59:24Z

[Term]
id: ZFA:0005341
name: medial longitudinal catecholaminergic tract
namespace: zebrafish_anatomy
def: "CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord.  Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-091221-28]
synonym: "medial longitudinal CA tract" EXACT [ZFIN:ZDB-PUB-091221-28]
synonym: "mlct" EXACT []
xref: TAO:0005341
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T06:07:36Z

[Term]
id: ZFA:0005342
name: anterior catecholaminergic tract
namespace: zebrafish_anatomy
def: "CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon.  At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-091221-28]
xref: TAO:0002144
is_a: ZFA:0001682 ! white matter
relationship: end ZFS:0000044 ! adult
relationship: start ZFS:0000000 ! unknown
created_by: Ceri
creation_date: 2010-03-18T06:11:28Z

[Term]
id: ZFA:0005343
name: endohypothalamic tract
namespace: zebrafish_anatomy
def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum an