cell_type,population_name,threshold_expression,color,plotting_markers
T_Cells,CD8_T_Cells,Intensity_MeanIntensity_CD8a > 0.1,red,Intensity_MeanIntensity_CD3@Intensity_MeanIntensity_CD45RA@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4@Intensity_MeanIntensity_CD8a@Intensity_MeanIntensity_Ki67
T_Cells,Ki67_CD8_T_Cells,Intensity_MeanIntensity_CD8a & Intensity_MeanIntensity_Ki67 > 0.15,yellow,Intensity_MeanIntensity_CD3@Intensity_MeanIntensity_CD45RA@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4@Intensity_MeanIntensity_CD8a@Intensity_MeanIntensity_Ki67
T_Cells,CD4_T_Cells,Intensity_MeanIntensity_CD4 > 0.1,blue,Intensity_MeanIntensity_CD3@Intensity_MeanIntensity_CD45RA@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4@Intensity_MeanIntensity_CD8a@Intensity_MeanIntensity_Ki67
T_Cells,Ki67_CD4_T_Cells,Intensity_MeanIntensity_CD4 > 0.1 & Intensity_MeanIntensity_Ki67 > 0.15,green,Intensity_MeanIntensity_CD3@Intensity_MeanIntensity_CD45RA@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4@Intensity_MeanIntensity_CD8a@Intensity_MeanIntensity_Ki67
T_Cells,T_Regs,Intensity_MeanIntensity_CD4 > 0.1 & Intensity_MeanIntensity_FoxP3 > 0.1,violet,Intensity_MeanIntensity_CD3@Intensity_MeanIntensity_CD45RA@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4@Intensity_MeanIntensity_CD8a@Intensity_MeanIntensity_Ki67@Intensity_MeanIntensity_FoxP3
Macrophages,CD16_Macrophages,Intensity_MeanIntensity_CD16 > 0.1,orange,Intensity_MeanIntensity_CD68@Intensity_MeanIntensity_CD11c@Intensity_MeanIntensity_CD16@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4
Dendritic_Cells,CD16_Dendritic_Cells,Intensity_MeanIntensity_CD16 > 0.1,cyan,Intensity_MeanIntensity_CD68@Intensity_MeanIntensity_CD11c@Intensity_MeanIntensity_CD16@Intensity_MeanIntensity_CD45RO@Intensity_MeanIntensity_CD4
Epithelial_Cells,Proliferating_Epithelium,Intensity_MeanIntensity_Ki67 > 0.1,magenta,Intensity_MeanIntensity_PanKeratin@Intensity_MeanIntensity_eCadherin@Intensity_MeanIntensity_Vimentin@Intensity_MeanIntensity_SMA@Intensity_MeanIntensity_Ki67