hub HDAC1&2MicrogliaKnockout
shortLabel HDAC1&2 Microglia Knockout
longLabel HDAC1&2 Microglia Knockout Histone Acetylation
useOneFile on
email annie.ciernia@ubc.ca

genome mm10

#https://raw.githubusercontent.com/ciernialab/Alder-ChIPseq-Tutorial/master/TrackHubmm10.txt
#wT MG:
#SRR6326796	H3K27ac
#SRR6326798	H3K27ac

track WT_H3K27ac
container multiWig
shortLabel WT_H3K27ac
longLabel WT_H3K27ac
type bigWig
aggregate transparentOverlay
showSubtrackColorOnUi on

	track WT_H3K27ac_repl1
	bigDataUrl https://raw.githubusercontent.com/ciernialab/Alder-ChIPseq-Tutorial/master/BigWigs/SRR6326796.bw
	shortLabel WT H3K27ac repl1
	longLabel WT H3K27ac repl1
	parent WT_H3K27ac
	color 198,34,71
	viewLimits 0:1000
	type bigWig

	track WT_H3K27ac_repl2
	bigDataUrl https://raw.githubusercontent.com/ciernialab/Alder-ChIPseq-Tutorial/master/BigWigs/SRR6326798.bw
	shortLabel WT H3K27ac repl2
	longLabel WT H3K27ac repl2
	parent WT_H3K27ac
	color 140,34,240
	viewLimits 0:1000
	type bigWig


#make normalized bedgraphs:
#H3K27ac
#HDAC1/2KO MG:
#TagDirectory/tag_SRR6326785
#TagDirectory/tag_SRR6326800
#TagDirectory/tag_SRR6326801

track HDAC1&2KO_H3K27ac
container multiWig
shortLabel HDAC1&2KO_H3K27ac
longLabel HDAC1&2KO_H3K27ac
type bigWig
aggregate transparentOverlay
showSubtrackColorOnUi on

	track HDAC1&2KO_H3K27ac_repl1
	bigDataUrl https://raw.githubusercontent.com/ciernialab/Alder-ChIPseq-Tutorial/master/BigWigs/SRR6326785.bw
	shortLabel HDAC1&2KO H3K27ac repl1
	longLabel HDAC1&2KO H3K27ac repl1
	parent HDAC1&2KO_H3K27ac
	color 198,34,71
	viewLimits 0:1000
	type bigWig

	track HDAC1&2KO_H3K27ac_repl2
	bigDataUrl https://raw.githubusercontent.com/ciernialab/Alder-ChIPseq-Tutorial/master/BigWigs/SRR6326800.bw
	shortLabel HDAC1&2KO H3K27ac repl2
	longLabel HDAC1&2KO H3K27ac repl2
	parent HDAC1&2KO_H3K27ac
	color 140,34,240
	viewLimits 0:1000
	type bigWig
	
	track HDAC1&2KO_H3K27ac_repl3
	bigDataUrl https://raw.githubusercontent.com/ciernialab/Alder-ChIPseq-Tutorial/master/BigWigs/SRR6326801.bw
	shortLabel HDAC1&2KO H3K27ac repl3
	longLabel HDAC1&2KO H3K27ac repl3
	parent HDAC1&2KO_H3K27ac
	color 34,58,240
	viewLimits 0:1000
	type bigWig