{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "This notebook shows how to use `biolqm` to upload a model and compute its fixpoints."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from colomoto_jupyter import tabulate\n",
    "import biolqm"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "You can upload a model in any format supported by `bioLQM` (see https://github.com/colomoto/bioLQM#how-to-use-it), including GINsim (`.zginml` or `.ginml` files) and SBML-qual (`.sbml` files)."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "lqm = biolqm.load(\"/tmp/colomoto5xd4zsjj_colomotoa6ug09_yphageLambda4.zginml\")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The following cell code computes the fixpoints, and use `tabulate` to display the resulting table."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "fps = biolqm.fixpoints(lqm)\n",
    "tabulate(fps)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
 ],
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    "name": "ipython",
    "version": 3
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   "file_extension": ".py",
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   "nbconvert_exporter": "python",
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