{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Create an executable model with CaSQ"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import casq.celldesigner2qual as casq\n",
    "from colomoto_jupyter import tabulate"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Convert a cell designer map\n",
    "casq.map_to_model(\"Apoptosis_VS_SSA_AN.xml\", \"Apoptosis_VS_SSA_AN.sbml\")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Load and view the model in GINsim"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "import biolqm\n",
    "import ginsim"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<img class=\"unconfined\" width=\"596px\" src=\"data:image/svg+xml;base64,<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 20001102//EN" "http://www.w3.org/TR/2000/CR-SVG-20001102/DTD/svg-20001102.dtd">
<svg width="596.0" height="426.0" xmlns="http://www.w3.org/2000/svg" version="1.1">
  <style type="text/css">
text {
  font-family: 'SansSerif';
  font-size: 12px;
}
.node .shape {
fill: #ffffff;
stroke: #000000;
}
.node text {
fill: #000000;
}
.edge {
stroke: #000000;
fill: none;
stroke-width: 1;
}
.edge_POSITIVE {
stroke: #00c800;
}
.edge_NEGATIVE {
stroke: #c80000;
}
.edge_DUAL {
stroke: #0000c8;
}
</style>
  <defs>
    <marker id="Marker_NEGATIVE_c80000" viewBox="-7 -7 12 15" orient="auto" markerHeight="9" markerWidth="9">
      <path stroke="#c80000" fill="#c80000" d="M -1 -4 L -1 4 L 1 4 L 1 -4 z"/>
    </marker>
  </defs>
  <path class="edge edge_NEGATIVE" marker-end="url(#Marker_NEGATIVE_c80000)" d="M 367.0 192.0 L 222.0 261.0"/>
  <path class="edge edge_NEGATIVE" marker-end="url(#Marker_NEGATIVE_c80000)" d="M 367.0 189.0 L 181.0 244.0"/>
  <defs>
    <marker id="Marker_POSITIVE_00c800" viewBox="-7 -7 12 15" orient="auto" markerHeight="9" markerWidth="9">
      <path stroke="#00c800" fill="#00c800" d="M -4 -5 L -2 0 L -4 5 L 2 0 z"/>
    </marker>
  </defs>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 223.0 48.0 L 282.0 100.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 435.0 108.0 L 201.0 141.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 124.0 47.0 L 184.0 37.0"/>
  <path class="edge edge_NEGATIVE" marker-end="url(#Marker_NEGATIVE_c80000)" d="M 362.0 161.0 L 373.0 167.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 168.0 159.0 L 161.0 168.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 200.0 153.0 L 245.0 173.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 167.0 157.0 L 167.0 286.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 460.0 293.0 L 222.0 274.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 478.0 46.0 L 463.0 89.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 296.0 190.0 L 522.0 267.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 172.0 260.0 L 172.0 260.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 198.0 285.0 L 198.0 395.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 432.0 341.0 L 222.0 279.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 558.0 206.0 L 558.0 262.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 518.0 187.0 L 545.0 187.0"/>
  <path class="edge edge_NEGATIVE" marker-end="url(#Marker_NEGATIVE_c80000)" d="M 502.0 197.0 L 540.0 259.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 395.0 321.0 L 430.0 338.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 320.0 110.0 L 436.0 110.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 273.0 121.0 L 201.0 139.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 465.0 180.0 L 472.0 180.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 165.0 314.0 L 196.0 392.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 396.0 100.0 L 436.0 100.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 153.0 239.0 L 153.0 198.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 157.0 264.0 L 157.0 286.0"/>
  <path class="edge edge_POSITIVE" marker-end="url(#Marker_POSITIVE_00c800)" d="M 381.0 47.0 L 456.0 34.0"/>
  <g id="FASFASL_complex" class="node">
    <ellipse id="FASFASL_complex_shape" class="shape" cx="210.5" cy="33.5" rx="22.5" ry="12.5"/>
    <text  id="FASFASL_complex_text" x="210" y="36" text-anchor="middle">FASFASL_complex</text>
  </g>
  <g id="BIMBADPUMA_complex" class="node">
    <ellipse id="BIMBADPUMA_complex_shape" class="shape" cx="568.5" cy="193.5" rx="22.5" ry="12.5"/>
    <text  id="BIMBADPUMA_complex_text" x="568" y="196" text-anchor="middle">BIMBADPUMA_complex</text>
  </g>
  <g id="Apoptosome_complex" class="node">
    <ellipse id="Apoptosome_complex_shape" class="shape" cx="196.5" cy="272.5" rx="22.5" ry="12.5"/>
    <text  id="Apoptosome_complex_text" x="196" y="275" text-anchor="middle">Apoptosome_complex</text>
  </g>
  <g id="TNFATNFR1_complex" class="node">
    <ellipse id="TNFATNFR1_complex_shape" class="shape" cx="482.5" cy="31.5" rx="22.5" ry="12.5"/>
    <text  id="TNFATNFR1_complex_text" x="482" y="34" text-anchor="middle">TNFATNFR1_complex</text>
  </g>
  <g id="BCL2BCLXLMCL1_complex" class="node">
    <ellipse id="BCL2BCLXLMCL1_complex_shape" class="shape" cx="495.5" cy="182.5" rx="22.5" ry="12.5"/>
    <text  id="BCL2BCLXLMCL1_complex_text" x="495" y="185" text-anchor="middle">BCL2BCLXLMCL1_complex</text>
  </g>
  <g id="TRADDFADD_complex" class="node">
    <ellipse id="TRADDFADD_complex_shape" class="shape" cx="459.5" cy="105.5" rx="22.5" ry="12.5"/>
    <text  id="TRADDFADD_complex_text" x="459" y="108" text-anchor="middle">TRADDFADD_complex</text>
  </g>
  <g id="TNFR1" class="node">
    <ellipse id="TNFR1_shape" class="shape" cx="356.5" cy="50.5" rx="22.5" ry="12.5"/>
    <text  id="TNFR1_text" x="356" y="53" text-anchor="middle">TNFR1</text>
  </g>
  <g id="FAS" class="node">
    <ellipse id="FAS_shape" class="shape" cx="99.5" cy="51.5" rx="22.5" ry="12.5"/>
    <text  id="FAS_text" x="99" y="54" text-anchor="middle">FAS</text>
  </g>
  <g id="FADD" class="node">
    <ellipse id="FADD_shape" class="shape" cx="297.5" cy="116.5" rx="22.5" ry="12.5"/>
    <text  id="FADD_text" x="297" y="119" text-anchor="middle">FADD</text>
  </g>
  <g id="CASP8" class="node">
    <ellipse id="CASP8_shape" class="shape" cx="175.5" cy="144.5" rx="22.5" ry="12.5"/>
    <text  id="CASP8_text" x="175" y="147" text-anchor="middle">CASP8</text>
  </g>
  <g id="CASP3" class="node">
    <ellipse id="CASP3_shape" class="shape" cx="152.5" cy="184.5" rx="22.5" ry="12.5"/>
    <text  id="CASP3_text" x="152" y="187" text-anchor="middle">CASP3</text>
  </g>
  <g id="CASP9" class="node">
    <ellipse id="CASP9_shape" class="shape" cx="155.5" cy="251.5" rx="22.5" ry="12.5"/>
    <text  id="CASP9_text" x="155" y="254" text-anchor="middle">CASP9</text>
  </g>
  <g id="BID" class="node">
    <ellipse id="BID_shape" class="shape" cx="271.5" cy="183.5" rx="22.5" ry="12.5"/>
    <text  id="BID_text" x="271" y="186" text-anchor="middle">BID</text>
  </g>
  <g id="Cytochrome_C" class="node">
    <ellipse id="Cytochrome_C_shape" class="shape" cx="484.5" cy="295.5" rx="22.5" ry="12.5"/>
    <text  id="Cytochrome_C_text" x="484" y="298" text-anchor="middle">Cytochrome_C</text>
  </g>
  <g id="AKT" class="node">
    <ellipse id="AKT_shape" class="shape" cx="391.5" cy="182.5" rx="22.5" ry="12.5"/>
    <text  id="AKT_text" x="391" y="185" text-anchor="middle">AKT</text>
  </g>
  <g id="BAX" class="node">
    <ellipse id="BAX_shape" class="shape" cx="548.5" cy="275.5" rx="22.5" ry="12.5"/>
    <text  id="BAX_text" x="548" y="278" text-anchor="middle">BAX</text>
  </g>
  <g id="CASP7" class="node">
    <ellipse id="CASP7_shape" class="shape" cx="160.5" cy="299.5" rx="22.5" ry="12.5"/>
    <text  id="CASP7_text" x="160" y="302" text-anchor="middle">CASP7</text>
  </g>
  <g id="Apoptosis_phenotype" class="node">
    <ellipse id="Apoptosis_phenotype_shape" class="shape" cx="201.5" cy="408.5" rx="22.5" ry="12.5"/>
    <text  id="Apoptosis_phenotype_text" x="201" y="411" text-anchor="middle">Apoptosis_phenotype</text>
  </g>
  <g id="SARS_M" class="node">
    <ellipse id="SARS_M_shape" class="shape" cx="347.5" cy="146.5" rx="22.5" ry="12.5"/>
    <text  id="SARS_M_text" x="347" y="149" text-anchor="middle">SARS_M</text>
  </g>
  <g id="SARS_E7a" class="node">
    <ellipse id="SARS_E7a_shape" class="shape" cx="442.5" cy="179.5" rx="22.5" ry="12.5"/>
    <text  id="SARS_E7a_text" x="442" y="182" text-anchor="middle">SARS_E7a</text>
  </g>
  <g id="TRADD" class="node">
    <ellipse id="TRADD_shape" class="shape" cx="373.5" cy="96.5" rx="22.5" ry="12.5"/>
    <text  id="TRADD_text" x="373" y="99" text-anchor="middle">TRADD</text>
  </g>
  <g id="Procasp9" class="node">
    <ellipse id="Procasp9_shape" class="shape" cx="313.5" cy="328.5" rx="22.5" ry="12.5"/>
    <text  id="Procasp9_text" x="313" y="331" text-anchor="middle">Procasp9</text>
  </g>
  <g id="SARS_3a" class="node">
    <ellipse id="SARS_3a_shape" class="shape" cx="370.5" cy="312.5" rx="22.5" ry="12.5"/>
    <text  id="SARS_3a_text" x="370" y="315" text-anchor="middle">SARS_3a</text>
  </g>
  <g id="MAPK14" class="node">
    <ellipse id="MAPK14_shape" class="shape" cx="456.5" cy="348.5" rx="22.5" ry="12.5"/>
    <text  id="MAPK14_text" x="456" y="351" text-anchor="middle">MAPK14</text>
  </g>
</svg>
\">"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "m = biolqm.load(\"Apoptosis_VS_SSA_AN.sbml\")\n",
    "m = biolqm.sanitize(m)\n",
    "\n",
    "lrg = biolqm.to_ginsim(m)\n",
    "ginsim.show(lrg)"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.6"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 4
}